BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034578
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1KYW|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYW|F Chain F, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase In Complex With 5-
Hydroxyconiferaldehyde
pdb|1KYZ|A Chain A, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|C Chain C, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
pdb|1KYZ|E Chain E, Crystal Structure Analysis Of Caffeic Acid5-Hydroxyferulic
Acid 35-O-Methyltransferase Ferulic Acid Complex
Length = 365
Score = 105 bits (261), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 53/88 (60%), Positives = 63/88 (71%), Gaps = 2/88 (2%)
Query: 1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
M+ + ITMK + Y GF ++S+VDVGGGTG V+ IV YP IKGINFDL HVI
Sbjct: 180 MSDHSTITMKKILETYT--GFEGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHVIE 237
Query: 61 TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
AP++ GV HVGGDMF +IP ADAVFMK
Sbjct: 238 DAPSYPGVEHVGGDMFVSIPKADAVFMK 265
>pdb|3REO|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3REO|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3REO|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3REO|D Chain D, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|A Chain A, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|B Chain B, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|C Chain C, Monolignol O-Methyltransferase (Momt)
pdb|3TKY|D Chain D, Monolignol O-Methyltransferase (Momt)
Length = 368
Score = 97.1 bits (240), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/88 (52%), Positives = 58/88 (65%), Gaps = 2/88 (2%)
Query: 1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
M+ + ITMK + Y +GF + ++VDVGGGTG V + IV YP I INFDL HVI
Sbjct: 183 MSSNSTITMKKILEMY--NGFEGLTTIVDVGGGTGAVASMIVAKYPSINAINFDLPHVIQ 240
Query: 61 TAPTHEGVSHVGGDMFDAIPNADAVFMK 88
AP GV H+GGDMFD +P DA+F+K
Sbjct: 241 DAPAFSGVEHLGGDMFDGVPKGDAIFIK 268
>pdb|1FP1|D Chain D, Crystal Structure Analysis Of Chalcone O-Methyltransferase
Length = 372
Score = 86.3 bits (212), Expect = 4e-18, Method: Composition-based stats.
Identities = 43/86 (50%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 3 CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATA 62
C T+ MK + Y GF I ++VDVGGG+G L I+ YP IKGINFDL VI A
Sbjct: 193 CATE--MKRMLEIYT--GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENA 248
Query: 63 PTHEGVSHVGGDMFDAIPNADAVFMK 88
P G+ HVGGDMF ++P DA+ +K
Sbjct: 249 PPLSGIEHVGGDMFASVPQGDAMILK 274
>pdb|3P9C|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Bound To
Sah
pdb|3P9I|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9I|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Sinapaldehyde
pdb|3P9K|A Chain A, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|B Chain B, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|C Chain C, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
pdb|3P9K|D Chain D, Crystal Structure Of Perennial Ryegrass Lpomt1 Complexed
With S- Adenosyl-L-Homocysteine And Coniferaldehyde
Length = 364
Score = 86.3 bits (212), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 48/69 (69%)
Query: 20 GFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAI 79
GF + ++VDVGGG G +A I YP IKG+NFDL HVI+ AP GV+HVGGDMF +
Sbjct: 198 GFEGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDLPHVISEAPQFPGVTHVGGDMFKEV 257
Query: 80 PNADAVFMK 88
P+ D + MK
Sbjct: 258 PSGDTILMK 266
>pdb|1FPQ|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Chalcone O- Methyltransferase
Length = 372
Score = 82.4 bits (202), Expect = 6e-17, Method: Composition-based stats.
Identities = 37/69 (53%), Positives = 45/69 (65%)
Query: 20 GFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAI 79
GF I ++VDVGGG+G L I+ YP IKGINFDL VI AP G+ HVGGD F ++
Sbjct: 206 GFEGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQVIENAPPLSGIEHVGGDXFASV 265
Query: 80 PNADAVFMK 88
P DA +K
Sbjct: 266 PQGDAXILK 274
>pdb|1FP2|A Chain A, Crystal Structure Analysis Of Isoflavone
O-Methyltransferase
Length = 352
Score = 71.2 bits (173), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 45/68 (66%)
Query: 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP 80
F+ + S+VDVGGGTGT I +++P +K I FD V+ +++VGGDMF +IP
Sbjct: 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDMFTSIP 245
Query: 81 NADAVFMK 88
NADAV +K
Sbjct: 246 NADAVLLK 253
>pdb|1FPX|A Chain A, Crystal Structure Analysis Of Selenomethionine Substituted
Isoflavone O-Methyltransferase
Length = 352
Score = 68.6 bits (166), Expect = 9e-13, Method: Composition-based stats.
Identities = 31/68 (45%), Positives = 44/68 (64%)
Query: 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP 80
F+ + S+VDVGGGTGT I +++P +K I FD V+ +++VGGD F +IP
Sbjct: 186 FDGLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQVVENLSGSNNLTYVGGDXFTSIP 245
Query: 81 NADAVFMK 88
NADAV +K
Sbjct: 246 NADAVLLK 253
>pdb|2QYO|A Chain A, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
pdb|2QYO|B Chain B, Crystal Structure Of Isoflavone O-Methyltransferase
Homolog In Complex With Biochanin A And Sah
Length = 357
Score = 59.7 bits (143), Expect = 4e-10, Method: Composition-based stats.
Identities = 27/68 (39%), Positives = 41/68 (60%)
Query: 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP 80
F + S+VDVGGG GT I +++P + + FD V+ +++VGGDMF ++P
Sbjct: 191 FEGLESIVDVGGGNGTTGKIICETFPKLTCVVFDRPKVVENLCGSNNLTYVGGDMFISVP 250
Query: 81 NADAVFMK 88
ADAV +K
Sbjct: 251 KADAVLLK 258
>pdb|1ZG3|A Chain A, Crystal Structure Of The Isoflavanone
4'-O-Methyltransferase Complexed With Sah And
2,7,4'-Trihydroxyisoflavanone
Length = 358
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 44/68 (64%)
Query: 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP 80
F + S+VDVGGGTG V I + +PH+K FD V+ +E ++ VGGDMF +IP
Sbjct: 191 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIP 250
Query: 81 NADAVFMK 88
+ADAV +K
Sbjct: 251 SADAVLLK 258
>pdb|1ZGA|A Chain A, Crystal Structure Of Isoflavanone 4'-o-methyltransferase
Complexed With (+)-6a-hydroxymaackiain
pdb|1ZHF|A Chain A, Crystal Structure Of Selenomethionine Substituted
Isoflavanone 4'-O- Methyltransferase
Length = 357
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 44/68 (64%)
Query: 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP 80
F + S+VDVGGGTG V I + +PH+K FD V+ +E ++ VGGDMF +IP
Sbjct: 190 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIP 249
Query: 81 NADAVFMK 88
+ADAV +K
Sbjct: 250 SADAVLLK 257
>pdb|1ZGJ|A Chain A, Crystal Structure Of Isoflavanone 4'-O-Methyltransferase
Complexed With (+)-Pisatin
Length = 354
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 32/68 (47%), Positives = 44/68 (64%)
Query: 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP 80
F + S+VDVGGGTG V I + +PH+K FD V+ +E ++ VGGDMF +IP
Sbjct: 187 FEGLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQPQVVGNLTGNENLNFVGGDMFKSIP 246
Query: 81 NADAVFMK 88
+ADAV +K
Sbjct: 247 SADAVLLK 254
>pdb|2IP2|A Chain A, Structure Of The Pyocyanin Biosynthetic Protein Phzm
pdb|2IP2|B Chain B, Structure Of The Pyocyanin Biosynthetic Protein Phzm
Length = 334
Score = 45.4 bits (106), Expect = 9e-06, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 38/70 (54%), Gaps = 7/70 (10%)
Query: 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTH-------EGVSHVGGDMFD 77
RS VDVGGG+G + I+++ P +G+ D + + A + E VS VGGDM
Sbjct: 169 RSFVDVGGGSGELTKAILQAEPSARGVMLDREGSLGVARDNLSSLLAGERVSLVGGDMLQ 228
Query: 78 AIPNADAVFM 87
+P+ +++
Sbjct: 229 EVPSNGDIYL 238
>pdb|1QZZ|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Methionine (Sam)
pdb|1R00|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adensyl-L-Homocystein (Sah)
Length = 374
Score = 40.8 bits (94), Expect = 2e-04, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 45/95 (47%), Gaps = 11/95 (11%)
Query: 1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL----- 55
M+C + +A Y ++ +R ++DVGGG G +LA I PH++G +L
Sbjct: 163 MSCDEDLAYEAPADAYD---WSAVRHVLDVGGGNGGMLAAIALRAPHLRGTLVELAGPAE 219
Query: 56 --QHVIATAPTHEGVSHVGGDMFDAIP-NADAVFM 87
+ A A + V+ GD F +P AD V +
Sbjct: 220 RARRRFADAGLADRVTVAEGDFFKPLPVTADVVLL 254
>pdb|4A6D|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam
pdb|4A6E|A Chain A, Crystal Structure Of Human N-Acetylserotonin
Methyltransferase (Asmt) In Complex With Sam And
N-Acetylserotonin
Length = 353
Score = 40.4 bits (93), Expect = 2e-04, Method: Composition-based stats.
Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
Query: 27 MVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTH------EGVSHVGGDMF-DAI 79
M D+GGG G + E + YP K FD+ V+ TA H E + GD F D +
Sbjct: 183 MCDLGGGAGALAKECMSLYPGCKITVFDIPEVVWTAKQHFSFQEEEQIDFQEGDFFKDPL 242
Query: 80 PNAD 83
P AD
Sbjct: 243 PEAD 246
>pdb|3LST|A Chain A, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
pdb|3LST|B Chain B, Crystal Structure Of Calo1, Methyltransferase In
Calicheamicin Biosynthesis, Sah Bound Form
Length = 348
Score = 37.0 bits (84), Expect = 0.003, Method: Composition-based stats.
Identities = 22/68 (32%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA----TAPTHEGV-SHVGGDMFDAIP 80
++ DVGGG G L +++ +P ++G+ D V+A AP G V GD +P
Sbjct: 187 TVADVGGGRGGFLLTVLREHPGLQGVLLDRAEVVARHRLDAPDVAGRWKVVEGDFLREVP 246
Query: 81 NADAVFMK 88
+AD +K
Sbjct: 247 HADVHVLK 254
>pdb|1X19|A Chain A, Crystal Structure Of Bchu Involved In Bacteriochlorophyll
C Biosynthesis
pdb|1X1A|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Methionine
pdb|1X1B|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine
pdb|1X1C|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn2+
pdb|1X1D|A Chain A, Crystal Structure Of Bchu Complexed With
S-Adenosyl-L-Homocysteine And Zn-Bacteriopheophorbide D
Length = 359
Score = 36.2 bits (82), Expect = 0.005, Method: Composition-based stats.
Identities = 24/89 (26%), Positives = 44/89 (49%), Gaps = 11/89 (12%)
Query: 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATA--- 62
K ++ + K+DG ++ M+DVGGG G + A ++K +P + +L I
Sbjct: 176 KFAIQLLLEEAKLDG---VKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNEN 232
Query: 63 PTHEGVSH----VGGDMF-DAIPNADAVF 86
+GV+ + D++ ++ P ADAV
Sbjct: 233 AAEKGVADRMRGIAVDIYKESYPEADAVL 261
>pdb|3GWZ|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GWZ|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr
pdb|3GXO|A Chain A, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|D Chain D, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|C Chain C, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
pdb|3GXO|B Chain B, Structure Of The Mitomycin 7-O-Methyltransferase Mmcr With
Bound Mitomycin A
Length = 369
Score = 35.8 bits (81), Expect = 0.006, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 39/74 (52%), Gaps = 7/74 (9%)
Query: 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAP---THEGVSH----VGG 73
F+ + VD+GGG G++ A ++ ++P ++G + V A T G++ + G
Sbjct: 200 FSGAATAVDIGGGRGSLXAAVLDAFPGLRGTLLERPPVAEEARELLTGRGLADRCEILPG 259
Query: 74 DMFDAIPNADAVFM 87
D F+ IP+ V++
Sbjct: 260 DFFETIPDGADVYL 273
>pdb|3MCZ|A Chain A, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis.
pdb|3MCZ|B Chain B, The Structure Of An O-Methyltransferase Family Protein
From Burkholderia Thailandensis
Length = 352
Score = 34.7 bits (78), Expect = 0.014, Method: Composition-based stats.
Identities = 13/35 (37%), Positives = 24/35 (68%)
Query: 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55
F R+++D+ GG GT LA++++ +P + G +DL
Sbjct: 177 FARARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL 211
>pdb|1TW2|A Chain A, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW2|B Chain B, Crystal Structure Of Carminomycin-4-O-Methyltransferase
(Dnrk) In Complex With S-Adenosyl-L-Homocystein (Sah)
And 4-Methoxy-E-Rhodomycin T (M-Et)
pdb|1TW3|A Chain A, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
pdb|1TW3|B Chain B, Crystal Structure Of Carminomycin-4-o-methyltransferase
(dnrk) In Complex With S-adenosyl-l-homocystein (sah)
And 4-methoxy-e-rhodomycin T (m-et)
Length = 360
Score = 32.7 bits (73), Expect = 0.058, Method: Composition-based stats.
Identities = 29/95 (30%), Positives = 48/95 (50%), Gaps = 11/95 (11%)
Query: 1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIA 60
+AC + A + Y + N+R ++DVGGG G A I + PH+ ++ +
Sbjct: 164 LACDQDVAFDAPAAAYD---WTNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMAGTVD 220
Query: 61 TAPTH---EGVSH----VGGDMFDAIP-NADAVFM 87
TA ++ EG+S V GD F+ +P ADA+ +
Sbjct: 221 TARSYLKDEGLSDRVDVVEGDFFEPLPRKADAIIL 255
>pdb|3HM2|A Chain A, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|B Chain B, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|C Chain C, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|D Chain D, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|E Chain E, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|F Chain F, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|G Chain G, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
pdb|3HM2|H Chain H, Crystal Structure Of Putative Precorrin-6y C5,15-
Methyltransferase Targeted Domain From Corynebacterium
Diphtheriae
Length = 178
Score = 30.4 bits (67), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 11/73 (15%)
Query: 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL----QHVIATAPTHEGVS------HVGGDM 75
++ D+GGG+G++ E ++S P + F++ + I + + GVS
Sbjct: 28 TLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRA 87
Query: 76 FDAIP-NADAVFM 87
FD +P N D +F+
Sbjct: 88 FDDVPDNPDVIFI 100
>pdb|1H4H|A Chain A, Oligosaccharide-Binding To Family 11 Xylanases: Both
Covalent Intermediate And Mutant-Product Complexes
Display 2,5b Conformations At The Active-Centre
pdb|1H4H|B Chain B, Oligosaccharide-Binding To Family 11 Xylanases: Both
Covalent Intermediate And Mutant-Product Complexes
Display 2,5b Conformations At The Active-Centre
pdb|1H4H|C Chain C, Oligosaccharide-Binding To Family 11 Xylanases: Both
Covalent Intermediate And Mutant-Product Complexes
Display 2,5b Conformations At The Active-Centre
pdb|1H4H|D Chain D, Oligosaccharide-Binding To Family 11 Xylanases: Both
Covalent Intermediate And Mutant-Product Complexes
Display 2,5b Conformations At The Active-Centre
Length = 209
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 7/56 (12%)
Query: 3 CTTKITMKAFVSHYKVDGFNNIR-------SMVDVGGGTGTVLAEIVKSYPHIKGI 51
C T+ V++Y VD + N R + V GGT + + + P IKGI
Sbjct: 83 CVYGWTVDPLVAYYIVDSWGNWRPPGATPKGTITVDGGTYDIYETLRVNQPSIKGI 138
>pdb|1QH6|A Chain A, Catalysis And Specificity In Enzymatic Glycoside
Hydrolases: A 2,5b Conformation For The Glycosyl-Enzyme
Intermidiate Revealed By The Structure Of The Bacillus
Agaradhaerens Family 11 Xylanase
pdb|1QH6|B Chain B, Catalysis And Specificity In Enzymatic Glycoside
Hydrolases: A 2,5b Conformation For The Glycosyl-Enzyme
Intermidiate Revealed By The Structure Of The Bacillus
Agaradhaerens Family 11 Xylanase
pdb|1QH7|A Chain A, Catalysis And Specificity In Enzymatic Glycoside
Hydrolases: A 2,5b Conformation For The Glycosyl-enzyme
Intermidiate Revealed By The Structure Of The Bacillus
Agaradhaerens Family 11 Xylanase
pdb|1QH7|B Chain B, Catalysis And Specificity In Enzymatic Glycoside
Hydrolases: A 2,5b Conformation For The Glycosyl-enzyme
Intermidiate Revealed By The Structure Of The Bacillus
Agaradhaerens Family 11 Xylanase
pdb|1H4G|A Chain A, Oligosaccharide-Binding To Family 11 Xylanases: Both
Covalent Intermediate And Mutant-Product Complexes
Display 2,5b Conformations At The Active-Centre
pdb|1H4G|B Chain B, Oligosaccharide-Binding To Family 11 Xylanases: Both
Covalent Intermediate And Mutant-Product Complexes
Display 2,5b Conformations At The Active-Centre
Length = 207
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 3 CTTKITMKAFVSHYKVDGFNNIR-------SMVDVGGGTGTVLAEIVKSYPHIKGI 51
C T+ V +Y VD + N R + V GGT + + + P IKGI
Sbjct: 83 CVYGWTVDPLVEYYIVDSWGNWRPPGATPKGTITVDGGTYDIYETLRVNQPSIKGI 138
>pdb|2F6B|A Chain A, Structural And Active Site Modification Studies Implicate
Glu, Trp And Arg In The Activity Of Xylanase From
Alkalophilic Bacillus Sp. (Ncl 87-6-10).
pdb|2F6B|B Chain B, Structural And Active Site Modification Studies Implicate
Glu, Trp And Arg In The Activity Of Xylanase From
Alkalophilic Bacillus Sp. (Ncl 87-6-10)
Length = 206
Score = 26.9 bits (58), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 24/56 (42%), Gaps = 7/56 (12%)
Query: 3 CTTKITMKAFVSHYKVDGFNNIR-------SMVDVGGGTGTVLAEIVKSYPHIKGI 51
C T+ V +Y VD + N R + V GGT + + + P IKGI
Sbjct: 83 CVYGWTVDPLVEYYIVDSWGNWRPPGATPKGTITVDGGTYDIYETLRVNQPSIKGI 138
>pdb|3RW9|A Chain A, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
pdb|3RW9|B Chain B, Crystal Structure Of Human Spermidine Synthase In Complex
With Decarboxylated S-Adenosylhomocysteine
Length = 304
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGI 51
N R ++ +GGG G VL E+VK +P ++ +
Sbjct: 95 NPRKVLIIGGGDGGVLREVVK-HPSVESV 122
>pdb|2O05|A Chain A, Human Spermidine Synthase
pdb|2O05|B Chain B, Human Spermidine Synthase
pdb|2O06|A Chain A, Human Spermidine Synthase
pdb|2O06|B Chain B, Human Spermidine Synthase
pdb|2O07|A Chain A, Human Spermidine Synthase
pdb|2O07|B Chain B, Human Spermidine Synthase
pdb|2O0L|A Chain A, Human Spermidine Synthase
pdb|2O0L|B Chain B, Human Spermidine Synthase
Length = 304
Score = 26.9 bits (58), Expect = 2.7, Method: Composition-based stats.
Identities = 12/29 (41%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
Query: 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGI 51
N R ++ +GGG G VL E+VK +P ++ +
Sbjct: 95 NPRKVLIIGGGDGGVLREVVK-HPSVESV 122
>pdb|1XDS|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDS|B Chain B, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With S-Adenosyl-L-Methionine (Sam) And
11-Deoxy- Beta-Rhodomycin (Dbra)
pdb|1XDU|A Chain A, Crystal Structure Of Aclacinomycin-10-Hydroxylase (Rdmb)
In Complex With Sinefungin (Sfg)
Length = 374
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 8/72 (11%)
Query: 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-------QHVIATAPTHEGVSHVGGDMF 76
+R ++DVGGG G LA I PH++G +L + A A + V+ GD F
Sbjct: 183 VRHVLDVGGGNGGXLAAIALRAPHLRGTLVELAGPAERARRRFADAGLADRVTVAEGDFF 242
Query: 77 DAIP-NADAVFM 87
+P AD V +
Sbjct: 243 KPLPVTADVVLL 254
>pdb|3TSH|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|A Chain A, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
pdb|3TSJ|B Chain B, Crystal Structure Of Phl P 4, A Grass Pollen Allergen With
Glucose Dehydrogenase Activity
Length = 500
Score = 26.2 bits (56), Expect = 5.6, Method: Composition-based stats.
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 27 MVDVGGGTGTVLAEIVKSYPHIKGINFDLQHV 58
+ D G T + E +PH KG+ F++Q+V
Sbjct: 370 IFDPYGATISATPESATPFPHRKGVLFNIQYV 401
>pdb|4EGB|A Chain A, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|B Chain B, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|C Chain C, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|D Chain D, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|E Chain E, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|F Chain F, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|G Chain G, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
pdb|4EGB|H Chain H, 3.0 Angstrom Resolution Crystal Structure Of Dtdp-Glucose
4,6- Dehydratase (Rfbb) From Bacillus Anthracis Str.
Ames In Complex With Nad
Length = 346
Score = 25.4 bits (54), Expect = 7.8, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 35 GTV-LAEIVKSYPHIKGINFDLQHVIAT 61
GTV L E+VK YPHIK + V +
Sbjct: 128 GTVTLLELVKKYPHIKLVQVSTDEVYGS 155
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.404
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,754,012
Number of Sequences: 62578
Number of extensions: 102876
Number of successful extensions: 296
Number of sequences better than 100.0: 41
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 41
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)