Query 034578
Match_columns 90
No_of_seqs 186 out of 1004
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 04:18:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034578.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034578hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00891 Methyltransf_2: O-met 99.9 2.6E-22 5.6E-27 132.2 7.3 87 1-90 80-167 (241)
2 TIGR02716 C20_methyl_CrtF C-20 99.7 5.4E-17 1.2E-21 110.2 8.6 81 7-90 136-224 (306)
3 PF12847 Methyltransf_18: Meth 99.6 2.5E-15 5.4E-20 88.0 6.9 66 24-89 2-78 (112)
4 KOG3178 Hydroxyindole-O-methyl 99.6 4.2E-15 9.2E-20 102.1 6.6 88 1-90 157-245 (342)
5 COG2890 HemK Methylase of poly 99.5 2E-14 4.3E-19 97.2 7.3 82 3-88 94-183 (280)
6 PRK14103 trans-aconitate 2-met 99.5 4.4E-14 9.6E-19 93.8 7.8 79 7-89 16-97 (255)
7 PRK01683 trans-aconitate 2-met 99.5 3.5E-13 7.5E-18 89.4 8.8 81 6-89 17-101 (258)
8 PF13847 Methyltransf_31: Meth 99.5 2.6E-13 5.5E-18 83.9 7.5 67 23-89 3-81 (152)
9 COG2226 UbiE Methylase involve 99.5 3.2E-13 7E-18 89.4 8.2 67 23-89 51-127 (238)
10 COG4106 Tam Trans-aconitate me 99.5 7E-14 1.5E-18 91.3 4.5 77 9-88 19-99 (257)
11 TIGR03587 Pse_Me-ase pseudamin 99.5 5.2E-13 1.1E-17 86.6 8.4 68 22-89 42-113 (204)
12 PRK08287 cobalt-precorrin-6Y C 99.4 9.6E-13 2.1E-17 83.8 9.1 74 12-88 23-104 (187)
13 PF05175 MTS: Methyltransferas 99.4 2.4E-13 5.1E-18 85.8 5.8 66 23-88 31-105 (170)
14 TIGR00536 hemK_fam HemK family 99.4 1.6E-12 3.5E-17 87.8 8.4 82 5-88 98-189 (284)
15 TIGR03533 L3_gln_methyl protei 99.4 2.3E-12 4.9E-17 87.3 8.7 66 23-88 121-196 (284)
16 PRK15001 SAM-dependent 23S rib 99.4 2E-12 4.3E-17 90.6 8.2 77 9-88 217-305 (378)
17 PRK14966 unknown domain/N5-glu 99.4 3E-12 6.5E-17 90.5 8.4 80 4-88 237-326 (423)
18 TIGR02752 MenG_heptapren 2-hep 99.4 4.2E-12 9.1E-17 82.9 8.5 77 10-89 35-122 (231)
19 PF01209 Ubie_methyltran: ubiE 99.4 1.5E-12 3.2E-17 86.1 6.1 69 21-89 45-124 (233)
20 PRK11805 N5-glutamine S-adenos 99.4 3.5E-12 7.6E-17 87.2 8.0 64 25-88 135-208 (307)
21 PRK00107 gidB 16S rRNA methylt 99.4 4.7E-12 1E-16 81.3 8.0 67 22-88 44-119 (187)
22 PRK15451 tRNA cmo(5)U34 methyl 99.4 2E-12 4.4E-17 85.7 6.2 66 23-88 56-132 (247)
23 COG2813 RsmC 16S RNA G1207 met 99.4 5.3E-12 1.1E-16 85.7 8.1 76 10-88 148-231 (300)
24 PLN02233 ubiquinone biosynthes 99.3 7.5E-12 1.6E-16 83.8 8.7 69 21-89 71-153 (261)
25 PLN02244 tocopherol O-methyltr 99.3 7.7E-12 1.7E-16 86.5 8.9 66 22-88 117-193 (340)
26 TIGR00740 methyltransferase, p 99.3 4.4E-12 9.5E-17 83.5 7.3 67 23-89 53-130 (239)
27 COG2242 CobL Precorrin-6B meth 99.3 7E-12 1.5E-16 80.2 7.8 73 13-88 27-109 (187)
28 TIGR02469 CbiT precorrin-6Y C5 99.3 1.4E-11 3E-16 72.8 8.5 80 6-88 5-95 (124)
29 TIGR02072 BioC biotin biosynth 99.3 4.7E-12 1E-16 82.2 6.9 86 4-89 15-106 (240)
30 TIGR03704 PrmC_rel_meth putati 99.3 8.5E-12 1.8E-16 83.2 8.0 83 4-88 69-160 (251)
31 TIGR00138 gidB 16S rRNA methyl 99.3 6.7E-12 1.5E-16 80.1 7.0 66 23-88 42-116 (181)
32 PRK09328 N5-glutamine S-adenos 99.3 1.4E-11 3.1E-16 82.1 8.5 81 5-88 93-182 (275)
33 PRK10258 biotin biosynthesis p 99.3 1.2E-11 2.6E-16 81.8 7.8 80 4-88 26-110 (251)
34 PTZ00098 phosphoethanolamine N 99.3 1.4E-11 3.1E-16 82.5 8.1 76 9-88 41-124 (263)
35 PRK01544 bifunctional N5-gluta 99.3 9.2E-12 2E-16 90.0 7.7 65 24-88 139-213 (506)
36 TIGR03534 RF_mod_PrmC protein- 99.3 1.9E-11 4.1E-16 80.4 8.5 80 5-88 73-161 (251)
37 PRK11207 tellurite resistance 99.3 1.5E-11 3.3E-16 79.2 7.7 76 9-89 19-103 (197)
38 PLN02336 phosphoethanolamine N 99.3 2.1E-11 4.5E-16 87.1 8.9 77 9-89 255-340 (475)
39 PRK09489 rsmC 16S ribosomal RN 99.3 2.2E-11 4.7E-16 84.5 8.2 76 10-88 186-268 (342)
40 PRK08317 hypothetical protein; 99.3 3.5E-11 7.7E-16 77.9 8.7 81 6-89 5-95 (241)
41 PRK13944 protein-L-isoaspartat 99.3 4.5E-11 9.7E-16 77.4 9.0 78 9-89 61-150 (205)
42 TIGR00080 pimt protein-L-isoas 99.3 4.2E-11 9.2E-16 77.9 8.7 78 8-88 65-153 (215)
43 PF08242 Methyltransf_12: Meth 99.3 1.1E-12 2.4E-17 75.5 1.2 63 28-90 1-75 (99)
44 PRK05785 hypothetical protein; 99.3 2.8E-11 6.1E-16 79.5 7.9 64 23-89 51-118 (226)
45 COG4123 Predicted O-methyltran 99.3 8.6E-12 1.9E-16 83.0 5.1 68 21-88 42-122 (248)
46 COG2230 Cfa Cyclopropane fatty 99.3 2.6E-11 5.6E-16 82.0 7.3 80 4-87 56-143 (283)
47 PRK11088 rrmA 23S rRNA methylt 99.3 3.8E-11 8.3E-16 80.6 8.2 66 23-88 85-158 (272)
48 PRK13942 protein-L-isoaspartat 99.3 6.8E-11 1.5E-15 77.0 9.0 79 7-88 63-152 (212)
49 PF08241 Methyltransf_11: Meth 99.3 2.9E-11 6.3E-16 68.2 6.3 61 28-89 1-68 (95)
50 smart00650 rADc Ribosomal RNA 99.2 4.8E-11 1E-15 75.0 7.7 75 9-88 2-84 (169)
51 PF13649 Methyltransf_25: Meth 99.2 1E-11 2.2E-16 72.0 4.2 62 27-88 1-74 (101)
52 PRK14896 ksgA 16S ribosomal RN 99.2 8E-11 1.7E-15 78.7 8.4 78 6-88 15-98 (258)
53 smart00828 PKS_MT Methyltransf 99.2 3.3E-11 7.1E-16 78.4 6.2 64 25-88 1-74 (224)
54 PRK00274 ksgA 16S ribosomal RN 99.2 5.6E-11 1.2E-15 80.0 7.5 76 6-86 28-110 (272)
55 PLN02490 MPBQ/MSBQ methyltrans 99.2 7.3E-11 1.6E-15 81.8 8.1 80 8-89 100-186 (340)
56 PRK06202 hypothetical protein; 99.2 1.1E-10 2.4E-15 76.5 8.4 68 22-89 59-137 (232)
57 TIGR00477 tehB tellurite resis 99.2 7E-11 1.5E-15 76.0 7.2 76 9-89 19-102 (195)
58 PRK00216 ubiE ubiquinone/menaq 99.2 1.6E-10 3.4E-15 75.2 8.9 77 10-89 41-129 (239)
59 PRK04457 spermidine synthase; 99.2 6.8E-11 1.5E-15 79.3 7.1 67 22-88 65-143 (262)
60 smart00138 MeTrc Methyltransfe 99.2 1.1E-10 2.3E-15 78.4 8.1 68 23-90 99-212 (264)
61 PRK11036 putative S-adenosyl-L 99.2 5.5E-11 1.2E-15 79.1 6.2 65 23-89 44-120 (255)
62 PRK07402 precorrin-6B methylas 99.2 1.4E-10 3E-15 74.4 7.8 76 9-87 29-115 (196)
63 PRK06922 hypothetical protein; 99.2 8.7E-11 1.9E-15 86.7 7.6 69 21-89 416-495 (677)
64 TIGR00537 hemK_rel_arch HemK-r 99.2 1.1E-10 2.5E-15 73.8 7.0 64 23-88 19-89 (179)
65 PLN02672 methionine S-methyltr 99.2 1.2E-10 2.6E-15 89.8 7.9 83 4-88 101-210 (1082)
66 PF07021 MetW: Methionine bios 99.2 6.5E-11 1.4E-15 76.1 5.3 66 22-89 12-83 (193)
67 TIGR02021 BchM-ChlM magnesium 99.2 2.3E-10 5E-15 74.4 7.7 65 23-89 55-127 (219)
68 TIGR00091 tRNA (guanine-N(7)-) 99.1 8.6E-11 1.9E-15 75.5 5.4 66 23-88 16-94 (194)
69 PRK00121 trmB tRNA (guanine-N( 99.1 9.1E-11 2E-15 75.9 5.5 66 23-88 40-118 (202)
70 PHA03411 putative methyltransf 99.1 1.5E-10 3.4E-15 78.1 6.6 66 23-88 64-133 (279)
71 PF13659 Methyltransf_26: Meth 99.1 9.8E-11 2.1E-15 68.9 5.0 63 25-88 2-77 (117)
72 PF02353 CMAS: Mycolic acid cy 99.1 1.5E-10 3.3E-15 78.1 6.3 79 5-87 47-133 (273)
73 PRK15068 tRNA mo(5)U34 methylt 99.1 3.2E-10 7E-15 78.0 7.7 75 11-89 113-197 (322)
74 PF05401 NodS: Nodulation prot 99.1 1.7E-10 3.6E-15 74.5 5.9 72 14-90 37-115 (201)
75 PHA03412 putative methyltransf 99.1 2.5E-10 5.4E-15 75.7 6.7 66 23-88 49-121 (241)
76 TIGR00755 ksgA dimethyladenosi 99.1 3.4E-10 7.5E-15 75.3 7.4 79 6-89 15-101 (253)
77 TIGR01934 MenG_MenH_UbiE ubiqu 99.1 6.6E-10 1.4E-14 71.6 8.5 77 10-89 29-114 (223)
78 KOG2904 Predicted methyltransf 99.1 2.9E-10 6.3E-15 76.7 6.7 84 5-88 130-229 (328)
79 PRK12335 tellurite resistance 99.1 3.9E-10 8.4E-15 76.3 7.4 65 23-89 120-192 (287)
80 KOG1540 Ubiquinone biosynthesi 99.1 7.5E-10 1.6E-14 74.0 7.8 66 23-88 100-184 (296)
81 PLN03075 nicotianamine synthas 99.1 6.3E-10 1.4E-14 75.9 7.7 66 23-88 123-202 (296)
82 PRK14121 tRNA (guanine-N(7)-)- 99.1 6.2E-10 1.3E-14 78.3 7.7 75 11-88 113-199 (390)
83 PTZ00338 dimethyladenosine tra 99.1 6.7E-10 1.4E-14 75.7 7.7 76 7-87 23-107 (294)
84 PRK04266 fibrillarin; Provisio 99.1 1.7E-09 3.7E-14 71.3 9.3 67 21-87 70-147 (226)
85 PRK07580 Mg-protoporphyrin IX 99.1 7.4E-10 1.6E-14 72.1 7.5 66 22-89 62-135 (230)
86 PRK14967 putative methyltransf 99.1 8.1E-10 1.7E-14 72.2 7.6 67 21-88 34-108 (223)
87 PRK00377 cbiT cobalt-precorrin 99.1 1.2E-09 2.6E-14 70.3 8.3 72 13-87 33-117 (198)
88 PRK00312 pcm protein-L-isoaspa 99.1 1.4E-09 3.1E-14 70.4 8.7 77 7-88 65-151 (212)
89 PRK11873 arsM arsenite S-adeno 99.1 6.9E-10 1.5E-14 74.2 7.3 69 21-89 75-154 (272)
90 PLN02585 magnesium protoporphy 99.1 5.8E-10 1.2E-14 76.7 6.8 65 23-89 144-220 (315)
91 TIGR00452 methyltransferase, p 99.1 8.4E-10 1.8E-14 75.8 7.5 76 10-89 111-196 (314)
92 PLN02396 hexaprenyldihydroxybe 99.1 3.2E-10 7E-15 78.1 5.3 65 23-89 131-206 (322)
93 TIGR02081 metW methionine bios 99.1 8.2E-10 1.8E-14 70.7 6.9 65 23-89 13-83 (194)
94 PRK13168 rumA 23S rRNA m(5)U19 99.0 7.9E-10 1.7E-14 78.8 7.0 78 6-88 283-374 (443)
95 COG2263 Predicted RNA methylas 99.0 1.7E-09 3.8E-14 69.4 7.3 65 23-88 45-115 (198)
96 PLN02336 phosphoethanolamine N 99.0 1.4E-09 3.1E-14 77.7 7.7 79 6-89 23-111 (475)
97 PF03848 TehB: Tellurite resis 99.0 2.4E-09 5.3E-14 69.1 8.0 75 9-88 19-101 (192)
98 PRK13943 protein-L-isoaspartat 99.0 2.8E-09 6E-14 73.5 8.5 76 10-88 70-156 (322)
99 PRK11705 cyclopropane fatty ac 99.0 2.6E-09 5.7E-14 75.1 8.5 76 9-88 156-235 (383)
100 PRK10909 rsmD 16S rRNA m(2)G96 99.0 9.2E-10 2E-14 71.3 5.4 79 7-88 39-128 (199)
101 PRK14968 putative methyltransf 99.0 2.3E-09 5E-14 67.6 7.0 65 22-88 22-97 (188)
102 TIGR00406 prmA ribosomal prote 99.0 4.2E-09 9.2E-14 71.4 8.2 65 23-88 159-232 (288)
103 PF01135 PCMT: Protein-L-isoas 99.0 2.1E-09 4.6E-14 70.1 6.4 78 8-88 60-148 (209)
104 KOG1270 Methyltransferases [Co 99.0 6.7E-10 1.5E-14 74.4 4.1 63 25-89 91-166 (282)
105 PRK04148 hypothetical protein; 99.0 5E-09 1.1E-13 64.1 7.5 76 7-88 3-84 (134)
106 PRK01581 speE spermidine synth 99.0 3.2E-09 6.9E-14 74.2 7.3 66 23-88 150-233 (374)
107 PRK03522 rumB 23S rRNA methylu 98.9 2E-09 4.3E-14 73.8 5.9 64 23-88 173-247 (315)
108 PF13489 Methyltransf_23: Meth 98.9 5.9E-09 1.3E-13 63.9 7.3 63 22-90 21-87 (161)
109 TIGR03840 TMPT_Se_Te thiopurin 98.9 1E-08 2.2E-13 67.1 8.6 63 23-87 34-119 (213)
110 TIGR03438 probable methyltrans 98.9 4.8E-09 1.1E-13 71.5 7.4 64 9-77 54-126 (301)
111 PRK00811 spermidine synthase; 98.9 3.9E-09 8.6E-14 71.5 6.7 66 23-88 76-157 (283)
112 PLN02366 spermidine synthase 98.9 5.9E-09 1.3E-13 71.5 7.3 66 22-87 90-171 (308)
113 PF06325 PrmA: Ribosomal prote 98.9 5.8E-09 1.3E-13 71.2 6.7 62 23-88 161-232 (295)
114 PRK00517 prmA ribosomal protei 98.9 8.1E-09 1.8E-13 68.7 7.1 41 23-64 119-160 (250)
115 PRK11188 rrmJ 23S rRNA methylt 98.9 1.9E-08 4.2E-13 65.5 8.6 63 21-87 49-123 (209)
116 COG2518 Pcm Protein-L-isoaspar 98.9 2.1E-08 4.6E-13 65.3 8.3 76 8-88 60-145 (209)
117 TIGR01177 conserved hypothetic 98.9 1E-08 2.3E-13 70.6 7.2 78 6-88 168-255 (329)
118 KOG1271 Methyltransferases [Ge 98.9 5.1E-09 1.1E-13 67.3 5.1 64 23-86 67-141 (227)
119 PTZ00146 fibrillarin; Provisio 98.9 3.2E-08 7E-13 67.4 9.2 83 6-88 115-209 (293)
120 PRK03612 spermidine synthase; 98.9 1.2E-08 2.6E-13 74.2 7.5 65 23-88 297-380 (521)
121 PRK14902 16S rRNA methyltransf 98.8 1.3E-08 2.9E-13 72.5 7.4 67 21-87 248-326 (444)
122 PRK00050 16S rRNA m(4)C1402 me 98.8 1.2E-08 2.6E-13 69.7 6.4 77 8-87 7-96 (296)
123 TIGR00438 rrmJ cell division p 98.8 3.7E-08 8.1E-13 62.8 8.1 69 12-87 23-104 (188)
124 COG2264 PrmA Ribosomal protein 98.8 1.3E-08 2.7E-13 69.6 6.2 66 22-88 161-236 (300)
125 PRK11727 23S rRNA mA1618 methy 98.8 1.4E-08 3.1E-13 70.0 6.5 66 23-88 114-196 (321)
126 PRK10901 16S rRNA methyltransf 98.8 3.5E-08 7.5E-13 70.2 8.5 75 10-87 234-319 (427)
127 TIGR00479 rumA 23S rRNA (uraci 98.8 7.4E-09 1.6E-13 73.5 4.9 77 7-88 279-369 (431)
128 PF08123 DOT1: Histone methyla 98.8 1.3E-08 2.9E-13 66.2 5.3 81 6-89 28-130 (205)
129 PRK13255 thiopurine S-methyltr 98.8 4.2E-08 9.1E-13 64.4 7.6 63 22-86 36-121 (218)
130 KOG1541 Predicted protein carb 98.8 1E-08 2.3E-13 67.5 4.2 80 3-87 31-118 (270)
131 COG2227 UbiG 2-polyprenyl-3-me 98.8 6.3E-09 1.4E-13 68.9 3.2 65 23-89 59-132 (243)
132 TIGR02085 meth_trns_rumB 23S r 98.8 1.4E-08 3.1E-13 71.1 5.0 64 23-88 233-307 (374)
133 cd02440 AdoMet_MTases S-adenos 98.8 4.1E-08 8.9E-13 54.9 6.0 63 26-89 1-74 (107)
134 KOG0820 Ribosomal RNA adenine 98.8 5.3E-08 1.2E-12 65.8 7.4 75 8-87 46-129 (315)
135 PLN02781 Probable caffeoyl-CoA 98.7 2.8E-08 6E-13 65.8 5.1 68 21-88 66-151 (234)
136 PRK05134 bifunctional 3-demeth 98.7 5.7E-08 1.2E-12 63.5 6.2 65 23-89 48-122 (233)
137 TIGR00417 speE spermidine synt 98.7 6.4E-08 1.4E-12 65.1 5.8 66 23-88 72-152 (270)
138 TIGR02143 trmA_only tRNA (urac 98.7 3.2E-08 6.9E-13 69.0 4.3 51 25-77 199-256 (353)
139 PRK14904 16S rRNA methyltransf 98.7 1.5E-07 3.2E-12 67.3 7.7 67 21-87 248-324 (445)
140 KOG3191 Predicted N6-DNA-methy 98.6 7.5E-08 1.6E-12 61.8 5.3 84 3-88 23-117 (209)
141 PLN02823 spermine synthase 98.6 1.6E-07 3.4E-12 65.2 7.0 65 23-87 103-182 (336)
142 PRK05031 tRNA (uracil-5-)-meth 98.6 5.3E-08 1.1E-12 68.1 4.5 51 25-77 208-265 (362)
143 PRK14903 16S rRNA methyltransf 98.6 2.1E-07 4.5E-12 66.4 7.0 67 21-87 235-313 (431)
144 TIGR00095 RNA methyltransferas 98.6 1E-07 2.2E-12 61.3 4.9 64 23-87 49-127 (189)
145 PF02390 Methyltransf_4: Putat 98.6 1.4E-07 3.1E-12 60.9 5.6 64 25-88 19-95 (195)
146 TIGR00563 rsmB ribosomal RNA s 98.6 2.9E-07 6.3E-12 65.5 7.5 76 9-87 227-315 (426)
147 COG2519 GCD14 tRNA(1-methylade 98.6 3.5E-07 7.5E-12 61.1 7.4 75 10-87 84-169 (256)
148 TIGR00478 tly hemolysin TlyA f 98.6 3.9E-07 8.5E-12 60.3 7.2 77 10-89 64-151 (228)
149 PRK14901 16S rRNA methyltransf 98.6 3.2E-07 6.9E-12 65.4 7.2 67 21-87 250-331 (434)
150 PRK11783 rlmL 23S rRNA m(2)G24 98.6 1.5E-07 3.2E-12 70.7 5.6 65 23-88 538-615 (702)
151 TIGR01983 UbiG ubiquinone bios 98.5 2.1E-07 4.6E-12 60.3 5.4 65 23-89 45-120 (224)
152 PF01170 UPF0020: Putative RNA 98.5 2.8E-07 6.1E-12 58.8 5.7 84 2-88 10-113 (179)
153 PF00398 RrnaAD: Ribosomal RNA 98.5 2.7E-07 6E-12 61.8 5.9 68 5-77 15-87 (262)
154 PRK15128 23S rRNA m(5)C1962 me 98.5 1.7E-07 3.6E-12 66.3 4.8 65 23-88 220-300 (396)
155 COG0421 SpeE Spermidine syntha 98.5 6E-07 1.3E-11 61.0 7.1 66 23-88 76-156 (282)
156 TIGR00446 nop2p NOL1/NOP2/sun 98.5 5.4E-07 1.2E-11 60.5 6.7 67 21-87 69-146 (264)
157 PRK13256 thiopurine S-methyltr 98.5 7.3E-07 1.6E-11 58.9 7.2 63 23-87 43-130 (226)
158 KOG1499 Protein arginine N-met 98.5 2.8E-07 6E-12 63.9 5.4 67 22-89 59-135 (346)
159 KOG1500 Protein arginine N-met 98.5 5.4E-07 1.2E-11 62.9 6.6 74 10-87 167-249 (517)
160 PLN02476 O-methyltransferase 98.5 4.3E-07 9.3E-12 61.6 5.4 67 21-87 116-200 (278)
161 COG0030 KsgA Dimethyladenosine 98.5 2.4E-06 5.2E-11 57.5 8.9 70 7-81 17-92 (259)
162 PF05724 TPMT: Thiopurine S-me 98.5 4.7E-07 1E-11 59.5 5.5 64 21-86 35-121 (218)
163 PF08704 GCD14: tRNA methyltra 98.5 1.4E-06 3E-11 58.3 7.7 76 9-87 29-119 (247)
164 PF01596 Methyltransf_3: O-met 98.4 1.3E-07 2.9E-12 61.5 2.6 67 22-88 44-128 (205)
165 KOG2899 Predicted methyltransf 98.4 6.6E-07 1.4E-11 59.8 5.8 44 21-64 56-100 (288)
166 PRK00536 speE spermidine synth 98.4 1.5E-06 3.2E-11 58.6 7.5 62 23-87 72-145 (262)
167 PF05185 PRMT5: PRMT5 arginine 98.4 8.1E-07 1.8E-11 63.8 6.3 64 24-87 187-264 (448)
168 PF01564 Spermine_synth: Sperm 98.4 1.1E-06 2.4E-11 58.6 5.4 65 23-87 76-156 (246)
169 PF10294 Methyltransf_16: Puta 98.3 2.5E-06 5.3E-11 54.1 6.2 69 21-89 43-127 (173)
170 PF09445 Methyltransf_15: RNA 98.3 3.3E-07 7.2E-12 57.8 2.1 62 25-88 1-76 (163)
171 PRK04338 N(2),N(2)-dimethylgua 98.3 9.4E-07 2E-11 62.3 4.6 65 24-88 58-132 (382)
172 TIGR01444 fkbM_fam methyltrans 98.3 3.2E-06 7E-11 51.2 6.2 52 26-77 1-59 (143)
173 PRK11783 rlmL 23S rRNA m(2)G24 98.3 4.4E-06 9.6E-11 62.8 8.1 84 3-88 172-310 (702)
174 PF01739 CheR: CheR methyltran 98.3 1.8E-06 3.9E-11 56.0 4.7 68 23-90 31-145 (196)
175 PF08003 Methyltransf_9: Prote 98.2 4E-06 8.6E-11 57.6 6.2 64 23-88 115-189 (315)
176 KOG3420 Predicted RNA methylas 98.2 2.9E-06 6.3E-11 53.0 4.9 63 24-88 49-121 (185)
177 COG4976 Predicted methyltransf 98.2 6.5E-07 1.4E-11 59.5 2.1 42 22-65 124-166 (287)
178 PF13679 Methyltransf_32: Meth 98.2 2.8E-06 6E-11 52.1 4.6 55 22-77 24-93 (141)
179 COG4122 Predicted O-methyltran 98.2 7.4E-06 1.6E-10 53.9 6.4 67 21-87 57-138 (219)
180 COG0220 Predicted S-adenosylme 98.2 3.9E-06 8.4E-11 55.5 5.1 53 25-77 50-109 (227)
181 PF02475 Met_10: Met-10+ like- 98.1 4.2E-06 9.2E-11 54.4 4.5 68 22-89 100-177 (200)
182 PRK11760 putative 23S rRNA C24 98.1 1.7E-05 3.7E-10 55.4 7.4 64 22-87 210-276 (357)
183 KOG1661 Protein-L-isoaspartate 98.1 8E-06 1.7E-10 53.6 5.3 78 10-88 70-169 (237)
184 PF09243 Rsm22: Mitochondrial 98.1 1E-05 2.3E-10 54.7 6.0 68 23-90 33-111 (274)
185 COG1352 CheR Methylase of chem 98.1 2.5E-05 5.5E-10 52.9 7.8 68 23-90 96-211 (268)
186 PLN02589 caffeoyl-CoA O-methyl 98.1 1.1E-05 2.5E-10 53.9 5.5 66 22-87 78-162 (247)
187 COG3963 Phospholipid N-methylt 98.1 2.1E-05 4.6E-10 50.1 6.3 82 4-88 32-124 (194)
188 PF04816 DUF633: Family of unk 98.1 9.4E-06 2E-10 52.9 4.8 62 27-88 1-73 (205)
189 COG4262 Predicted spermidine s 98.0 1.5E-05 3.2E-10 56.3 5.7 65 22-87 288-371 (508)
190 COG4076 Predicted RNA methylas 98.0 1.3E-05 2.7E-10 52.1 4.8 61 25-87 34-102 (252)
191 TIGR00006 S-adenosyl-methyltra 98.0 5.3E-05 1.1E-09 52.2 7.7 77 8-87 8-98 (305)
192 PRK01544 bifunctional N5-gluta 98.0 1.9E-05 4.1E-10 57.5 5.6 66 23-88 347-424 (506)
193 KOG3010 Methyltransferase [Gen 98.0 9.2E-06 2E-10 54.2 3.5 42 24-67 34-76 (261)
194 PF02384 N6_Mtase: N-6 DNA Met 97.9 4.8E-05 1E-09 51.8 6.2 77 9-88 35-132 (311)
195 PF12147 Methyltransf_20: Puta 97.9 0.00011 2.4E-09 50.4 7.8 67 22-88 134-216 (311)
196 PF07091 FmrO: Ribosomal RNA m 97.8 4.9E-05 1.1E-09 50.9 5.0 66 22-87 104-177 (251)
197 COG0116 Predicted N6-adenine-s 97.8 9.5E-05 2.1E-09 52.2 6.3 82 4-88 175-306 (381)
198 KOG2187 tRNA uracil-5-methyltr 97.7 3.9E-05 8.5E-10 55.8 4.0 52 21-74 381-439 (534)
199 COG2265 TrmA SAM-dependent met 97.7 6.5E-05 1.4E-09 53.9 5.1 76 7-87 280-368 (432)
200 PF02527 GidB: rRNA small subu 97.7 0.00016 3.5E-09 46.5 6.1 64 26-89 51-123 (184)
201 PF03602 Cons_hypoth95: Conser 97.7 2.6E-05 5.6E-10 50.0 2.3 64 23-87 42-120 (183)
202 PF06080 DUF938: Protein of un 97.7 9.8E-05 2.1E-09 48.2 4.9 36 23-58 24-61 (204)
203 PF05958 tRNA_U5-meth_tr: tRNA 97.7 4.5E-05 9.8E-10 53.3 3.5 64 6-75 183-253 (352)
204 TIGR02987 met_A_Alw26 type II 97.7 0.0001 2.2E-09 53.8 5.5 66 23-88 31-119 (524)
205 KOG2915 tRNA(1-methyladenosine 97.7 0.00042 9.2E-09 47.2 7.8 75 10-87 95-183 (314)
206 KOG2361 Predicted methyltransf 97.7 9.1E-05 2E-09 49.6 4.4 64 25-88 73-151 (264)
207 PRK10611 chemotaxis methyltran 97.6 0.00013 2.7E-09 49.9 5.0 67 24-90 116-232 (287)
208 PF01795 Methyltransf_5: MraW 97.6 0.00022 4.7E-09 49.3 6.1 67 8-77 8-80 (310)
209 PF07757 AdoMet_MTase: Predict 97.6 8.7E-05 1.9E-09 43.9 3.5 31 23-55 58-88 (112)
210 PF01728 FtsJ: FtsJ-like methy 97.6 0.00015 3.3E-09 45.7 4.7 49 6-56 6-57 (181)
211 COG0357 GidB Predicted S-adeno 97.6 0.00022 4.8E-09 46.9 5.5 66 24-89 68-143 (215)
212 COG3897 Predicted methyltransf 97.6 0.00023 5E-09 46.4 5.1 68 21-89 77-150 (218)
213 KOG4300 Predicted methyltransf 97.5 7.9E-05 1.7E-09 49.0 2.8 65 23-88 76-152 (252)
214 TIGR00308 TRM1 tRNA(guanine-26 97.5 0.00025 5.4E-09 50.1 5.5 63 25-87 46-120 (374)
215 KOG4058 Uncharacterized conser 97.5 0.00011 2.4E-09 46.1 3.2 72 7-82 59-139 (199)
216 COG0293 FtsJ 23S rRNA methylas 97.4 0.00062 1.3E-08 44.5 6.1 67 5-77 29-96 (205)
217 COG2384 Predicted SAM-dependen 97.4 0.00057 1.2E-08 45.1 5.8 65 24-88 17-92 (226)
218 KOG2730 Methylase [General fun 97.3 0.00013 2.8E-09 48.4 2.1 53 23-77 94-154 (263)
219 KOG3115 Methyltransferase-like 97.3 0.00015 3.3E-09 47.6 2.3 36 25-60 62-98 (249)
220 PF05219 DREV: DREV methyltran 97.3 0.0011 2.4E-08 44.8 6.4 65 23-90 94-160 (265)
221 PRK10742 putative methyltransf 97.2 0.0012 2.6E-08 44.3 5.6 73 10-87 76-170 (250)
222 COG0275 Predicted S-adenosylme 97.2 0.0017 3.8E-08 44.7 6.2 67 8-77 11-84 (314)
223 TIGR03439 methyl_EasF probable 97.1 0.0023 4.9E-08 44.5 6.6 66 7-77 65-143 (319)
224 COG0742 N6-adenine-specific me 97.1 0.002 4.3E-08 41.6 5.9 64 23-87 43-120 (187)
225 PF04672 Methyltransf_19: S-ad 97.1 0.00092 2E-08 45.3 4.4 55 23-77 68-132 (267)
226 COG2521 Predicted archaeal met 97.1 0.00076 1.6E-08 45.3 3.7 64 22-86 133-210 (287)
227 COG1092 Predicted SAM-dependen 97.1 0.00053 1.2E-08 48.8 3.1 62 24-87 218-296 (393)
228 PF05971 Methyltransf_10: Prot 97.1 0.0015 3.3E-08 45.0 5.0 65 24-88 103-184 (299)
229 PF05148 Methyltransf_8: Hypot 97.0 0.0055 1.2E-07 40.4 6.9 66 10-88 61-129 (219)
230 PRK11933 yebU rRNA (cytosine-C 96.9 0.0059 1.3E-07 44.5 7.1 67 21-87 111-189 (470)
231 PF05891 Methyltransf_PK: AdoM 96.9 0.0015 3.4E-08 43.0 3.6 67 23-90 55-131 (218)
232 PF03141 Methyltransf_29: Puta 96.6 0.0017 3.6E-08 47.4 2.8 65 22-89 116-189 (506)
233 COG2520 Predicted methyltransf 96.6 0.0032 7E-08 44.1 4.1 66 23-89 188-264 (341)
234 PF03059 NAS: Nicotianamine sy 96.6 0.0058 1.3E-07 41.7 4.8 65 24-88 121-199 (276)
235 COG1565 Uncharacterized conser 96.6 0.0043 9.4E-08 43.7 4.3 56 6-61 60-124 (370)
236 PF03291 Pox_MCEL: mRNA cappin 96.4 0.0039 8.4E-08 43.5 3.2 64 23-87 62-151 (331)
237 KOG4589 Cell division protein 96.4 0.0077 1.7E-07 39.3 4.3 36 21-56 67-103 (232)
238 PF10672 Methyltrans_SAM: S-ad 96.3 0.0069 1.5E-07 41.5 4.1 64 23-87 123-201 (286)
239 PF11968 DUF3321: Putative met 96.1 0.022 4.8E-07 37.6 5.4 76 4-90 31-113 (219)
240 KOG1501 Arginine N-methyltrans 95.8 0.015 3.3E-07 42.4 3.8 40 24-64 67-107 (636)
241 KOG1663 O-methyltransferase [S 95.7 0.044 9.6E-07 36.6 5.7 65 23-87 73-155 (237)
242 PF13578 Methyltransf_24: Meth 95.6 0.0036 7.7E-08 36.1 0.2 60 28-87 1-75 (106)
243 KOG0822 Protein kinase inhibit 95.5 0.05 1.1E-06 40.5 5.8 83 4-86 348-444 (649)
244 PLN02232 ubiquinone biosynthes 95.5 0.01 2.2E-07 37.0 2.1 39 51-89 1-52 (160)
245 PF04989 CmcI: Cephalosporin h 95.5 0.028 6.1E-07 36.9 4.1 55 23-77 32-96 (206)
246 KOG2940 Predicted methyltransf 95.5 0.027 5.8E-07 38.1 4.0 64 23-87 72-143 (325)
247 KOG1709 Guanidinoacetate methy 95.4 0.077 1.7E-06 35.5 6.0 76 7-87 89-175 (271)
248 PF05206 TRM13: Methyltransfer 95.4 0.071 1.5E-06 36.1 6.0 35 21-55 16-55 (259)
249 COG1041 Predicted DNA modifica 95.4 0.12 2.7E-06 36.4 7.3 65 21-87 195-270 (347)
250 COG0500 SmtA SAM-dependent met 95.4 0.051 1.1E-06 31.0 4.6 58 27-85 52-123 (257)
251 COG1189 Predicted rRNA methyla 95.3 0.1 2.2E-06 35.0 6.2 60 10-72 68-129 (245)
252 KOG2651 rRNA adenine N-6-methy 95.2 0.037 8.1E-07 39.7 4.2 41 21-62 151-192 (476)
253 PF01269 Fibrillarin: Fibrilla 95.2 0.23 5E-06 33.1 7.6 83 5-87 55-149 (229)
254 KOG1331 Predicted methyltransf 95.0 0.025 5.3E-07 38.8 2.8 60 23-86 45-108 (293)
255 COG5459 Predicted rRNA methyla 94.9 0.015 3.3E-07 41.3 1.6 65 23-87 113-188 (484)
256 KOG3045 Predicted RNA methylas 94.9 0.12 2.5E-06 35.5 5.7 54 22-88 179-235 (325)
257 PF02636 Methyltransf_28: Puta 94.8 0.059 1.3E-06 35.9 4.2 37 24-60 19-64 (252)
258 KOG3924 Putative protein methy 94.8 0.034 7.3E-07 39.8 3.1 70 21-90 190-281 (419)
259 PF11599 AviRa: RRNA methyltra 94.6 0.05 1.1E-06 36.2 3.4 43 22-64 50-95 (246)
260 PF01861 DUF43: Protein of unk 94.4 0.33 7.3E-06 32.6 6.9 64 23-87 44-118 (243)
261 KOG2793 Putative N2,N2-dimethy 94.1 0.24 5.2E-06 33.4 5.9 66 23-89 86-170 (248)
262 cd00315 Cyt_C5_DNA_methylase C 94.0 0.13 2.8E-06 34.8 4.6 61 26-88 2-69 (275)
263 PF04445 SAM_MT: Putative SAM- 93.4 0.13 2.9E-06 34.3 3.7 73 10-87 63-157 (234)
264 KOG1562 Spermidine synthase [A 93.4 0.035 7.6E-07 38.5 0.9 65 22-87 120-201 (337)
265 PF01555 N6_N4_Mtase: DNA meth 93.4 0.16 3.5E-06 32.3 4.0 51 7-63 179-230 (231)
266 COG0144 Sun tRNA and rRNA cyto 93.3 0.64 1.4E-05 32.8 7.2 67 21-87 154-235 (355)
267 COG1064 AdhP Zn-dependent alco 92.7 0.17 3.7E-06 35.6 3.6 65 22-87 165-235 (339)
268 PF04072 LCM: Leucine carboxyl 92.5 0.68 1.5E-05 29.4 5.9 55 23-77 78-141 (183)
269 COG1889 NOP1 Fibrillarin-like 92.3 1.3 2.8E-05 29.4 6.9 72 6-77 59-135 (231)
270 KOG1975 mRNA cap methyltransfe 91.8 0.15 3.2E-06 36.0 2.3 55 22-77 116-183 (389)
271 PF03686 UPF0146: Uncharacteri 91.7 0.64 1.4E-05 28.3 4.8 57 24-87 14-76 (127)
272 KOG2918 Carboxymethyl transfer 91.7 0.42 9.2E-06 33.4 4.4 39 22-60 86-126 (335)
273 PF02153 PDH: Prephenate dehyd 91.3 0.13 2.9E-06 34.4 1.7 51 37-88 1-52 (258)
274 PF02254 TrkA_N: TrkA-N domain 91.0 0.35 7.6E-06 27.9 3.1 55 32-87 4-68 (116)
275 PF11312 DUF3115: Protein of u 90.3 0.62 1.3E-05 32.5 4.2 33 25-57 88-141 (315)
276 PF03514 GRAS: GRAS domain fam 89.9 0.43 9.3E-06 33.9 3.3 43 10-55 100-149 (374)
277 PF14314 Methyltrans_Mon: Viru 89.9 0.98 2.1E-05 34.6 5.3 48 1-52 304-351 (675)
278 KOG1098 Putative SAM-dependent 89.6 0.66 1.4E-05 35.4 4.1 35 21-55 42-77 (780)
279 cd08283 FDH_like_1 Glutathione 89.4 1.6 3.4E-05 30.6 5.8 45 21-65 182-228 (386)
280 TIGR01470 cysG_Nterm siroheme 89.2 2.1 4.6E-05 27.8 6.0 62 24-88 9-76 (205)
281 COG1255 Uncharacterized protei 89.2 2.9 6.3E-05 25.3 5.9 58 23-87 13-76 (129)
282 PF06690 DUF1188: Protein of u 89.0 4.2 9.2E-05 27.5 7.2 73 5-86 26-101 (252)
283 PRK11524 putative methyltransf 89.0 1.2 2.6E-05 30.3 4.8 52 7-64 196-248 (284)
284 PF01189 Nol1_Nop2_Fmu: NOL1/N 88.6 3.5 7.6E-05 28.1 6.9 67 21-87 83-162 (283)
285 PF05050 Methyltransf_21: Meth 88.6 1.1 2.4E-05 27.0 4.2 32 29-60 1-37 (167)
286 PF12692 Methyltransf_17: S-ad 88.5 2.5 5.3E-05 26.7 5.6 45 7-55 16-60 (160)
287 KOG2782 Putative SAM dependent 88.1 0.48 1E-05 31.9 2.3 53 9-64 32-85 (303)
288 KOG2920 Predicted methyltransf 87.8 0.79 1.7E-05 31.6 3.3 36 23-59 116-152 (282)
289 COG0286 HsdM Type I restrictio 87.4 1.2 2.5E-05 32.8 4.2 54 8-64 174-232 (489)
290 PLN02668 indole-3-acetate carb 87.4 0.54 1.2E-05 33.7 2.4 35 23-57 63-112 (386)
291 PRK07502 cyclohexadienyl dehyd 87.3 2 4.2E-05 29.4 5.1 65 24-88 6-73 (307)
292 PF12242 Eno-Rase_NADH_b: NAD( 87.0 3.7 8E-05 22.9 5.3 35 21-55 36-72 (78)
293 KOG2666 UDP-glucose/GDP-mannos 86.7 1 2.2E-05 32.0 3.4 63 26-88 3-85 (481)
294 COG0287 TyrA Prephenate dehydr 86.6 2.8 6E-05 28.7 5.5 64 25-88 4-71 (279)
295 KOG3201 Uncharacterized conser 86.5 0.078 1.7E-06 34.0 -1.9 65 24-88 30-110 (201)
296 PRK13699 putative methylase; P 86.5 2.1 4.6E-05 28.3 4.7 51 8-64 152-203 (227)
297 PRK06719 precorrin-2 dehydroge 86.4 4 8.8E-05 25.4 5.8 62 23-87 12-76 (157)
298 KOG3987 Uncharacterized conser 86.2 0.41 8.9E-06 32.0 1.2 39 23-63 112-151 (288)
299 KOG0024 Sorbitol dehydrogenase 86.1 1.8 3.9E-05 30.6 4.4 44 21-64 167-212 (354)
300 PF13460 NAD_binding_10: NADH( 85.1 3.7 8.1E-05 25.3 5.2 53 32-87 5-66 (183)
301 KOG1269 SAM-dependent methyltr 85.0 0.82 1.8E-05 32.5 2.3 63 24-87 111-184 (364)
302 TIGR00027 mthyl_TIGR00027 meth 84.4 1.9 4.1E-05 29.1 3.8 53 23-77 81-143 (260)
303 PF03492 Methyltransf_7: SAM d 84.3 1.9 4.2E-05 30.1 3.9 68 21-88 14-114 (334)
304 PRK07417 arogenate dehydrogena 84.2 2.5 5.5E-05 28.5 4.4 59 27-88 3-64 (279)
305 PHA01634 hypothetical protein 83.8 1.9 4.1E-05 26.7 3.3 41 23-64 28-69 (156)
306 PRK05562 precorrin-2 dehydroge 83.4 4.4 9.6E-05 26.9 5.1 65 23-88 24-92 (223)
307 PRK09496 trkA potassium transp 82.9 4.5 9.8E-05 28.8 5.5 61 26-88 2-72 (453)
308 PRK06718 precorrin-2 dehydroge 82.9 8.1 0.00018 25.0 6.2 63 23-88 9-77 (202)
309 COG0031 CysK Cysteine synthase 82.6 4.7 0.0001 28.1 5.2 44 7-55 157-204 (300)
310 PRK04176 ribulose-1,5-biphosph 82.4 3.9 8.4E-05 27.4 4.7 48 5-55 9-56 (257)
311 KOG2078 tRNA modification enzy 82.2 0.49 1.1E-05 34.5 0.3 53 21-75 247-308 (495)
312 COG1063 Tdh Threonine dehydrog 82.2 2.5 5.5E-05 29.5 3.9 40 25-64 170-211 (350)
313 cd02190 epsilon_tubulin The tu 82.0 3.6 7.7E-05 29.3 4.6 42 10-53 90-136 (379)
314 PRK09273 hypothetical protein; 81.0 2.5 5.4E-05 28.0 3.3 41 24-64 63-103 (211)
315 PF06962 rRNA_methylase: Putat 80.9 1.8 3.8E-05 26.8 2.4 40 49-88 1-53 (140)
316 PRK09496 trkA potassium transp 80.5 3.6 7.8E-05 29.3 4.3 62 24-87 231-303 (453)
317 COG2933 Predicted SAM-dependen 80.4 5.9 0.00013 27.6 5.0 72 7-80 191-266 (358)
318 PRK03659 glutathione-regulated 79.7 5.5 0.00012 30.0 5.1 60 25-87 401-470 (601)
319 TIGR03329 Phn_aa_oxid putative 79.7 3.7 7.9E-05 29.6 4.1 31 25-55 25-57 (460)
320 PRK10669 putative cation:proto 79.4 4.9 0.00011 29.9 4.7 60 25-87 418-487 (558)
321 CHL00194 ycf39 Ycf39; Provisio 79.1 6.2 0.00013 26.8 4.9 57 30-87 5-70 (317)
322 PRK11908 NAD-dependent epimera 78.6 7.2 0.00015 26.8 5.1 50 26-76 3-56 (347)
323 KOG1252 Cystathionine beta-syn 78.4 5.3 0.00012 28.4 4.4 32 24-55 212-247 (362)
324 PLN02427 UDP-apiose/xylose syn 77.9 8.9 0.00019 26.8 5.5 53 24-77 14-76 (386)
325 PRK15076 alpha-galactosidase; 77.9 5.2 0.00011 29.0 4.4 63 26-88 3-82 (431)
326 TIGR00689 rpiB_lacA_lacB sugar 77.5 3.9 8.4E-05 25.4 3.2 49 27-75 58-108 (144)
327 TIGR01120 rpiB ribose 5-phosph 77.4 3.9 8.5E-05 25.4 3.2 40 26-65 58-97 (143)
328 cd06059 Tubulin The tubulin su 77.4 7 0.00015 27.7 4.9 45 9-55 79-128 (382)
329 cd02188 gamma_tubulin Gamma-tu 77.3 5.7 0.00012 28.9 4.4 36 21-56 130-171 (431)
330 PLN00220 tubulin beta chain; P 77.2 5.5 0.00012 29.0 4.4 44 9-54 120-168 (447)
331 COG3129 Predicted SAM-dependen 77.2 2 4.3E-05 29.3 1.9 58 6-64 62-120 (292)
332 TIGR00675 dcm DNA-methyltransf 77.0 3.7 8.1E-05 28.4 3.4 59 27-88 1-66 (315)
333 PF03435 Saccharop_dh: Sacchar 76.9 8.3 0.00018 27.1 5.1 61 27-87 1-73 (386)
334 COG1748 LYS9 Saccharopine dehy 76.9 16 0.00034 26.4 6.5 62 25-86 2-73 (389)
335 COG4017 Uncharacterized protei 76.7 13 0.00028 24.8 5.5 58 23-86 44-104 (254)
336 PRK09424 pntA NAD(P) transhydr 76.5 6.2 0.00013 29.4 4.5 42 23-65 164-207 (509)
337 PRK03562 glutathione-regulated 76.5 8.6 0.00019 29.2 5.4 63 24-88 400-471 (621)
338 PRK05571 ribose-5-phosphate is 76.1 4.5 9.8E-05 25.2 3.2 47 28-74 62-110 (148)
339 PF00145 DNA_methylase: C-5 cy 76.0 1.8 3.9E-05 29.1 1.6 61 26-88 2-68 (335)
340 KOG1099 SAM-dependent methyltr 76.0 1.7 3.6E-05 29.6 1.3 53 21-77 39-100 (294)
341 PF00091 Tubulin: Tubulin/FtsZ 75.9 6.7 0.00015 25.5 4.2 37 21-57 124-166 (216)
342 PTZ00357 methyltransferase; Pr 75.5 6 0.00013 31.2 4.3 53 25-77 702-774 (1072)
343 PF02086 MethyltransfD12: D12 75.2 7.7 0.00017 25.4 4.4 50 6-60 6-56 (260)
344 KOG3851 Sulfide:quinone oxidor 75.2 5.7 0.00012 28.5 3.8 33 23-55 38-72 (446)
345 PRK08507 prephenate dehydrogen 75.1 7.1 0.00015 26.2 4.2 61 26-88 2-65 (275)
346 TIGR03739 PRTRC_D PRTRC system 75.0 12 0.00026 25.8 5.4 47 9-57 261-307 (320)
347 PF01073 3Beta_HSD: 3-beta hyd 75.0 6.9 0.00015 26.5 4.2 55 32-86 4-71 (280)
348 PF07992 Pyr_redox_2: Pyridine 74.4 5.9 0.00013 24.6 3.6 30 26-55 1-30 (201)
349 PRK07454 short chain dehydroge 74.4 17 0.00037 23.3 5.8 54 23-77 5-66 (241)
350 cd00286 Tubulin_FtsZ Tubulin/F 74.3 10 0.00022 26.3 4.9 34 21-54 89-127 (328)
351 PRK15181 Vi polysaccharide bio 74.2 8.5 0.00018 26.6 4.5 62 24-86 15-95 (348)
352 PF02502 LacAB_rpiB: Ribose/Ga 74.1 3.3 7.1E-05 25.6 2.2 47 27-73 59-107 (140)
353 TIGR00292 thiazole biosynthesi 73.9 9 0.00019 25.7 4.5 49 4-55 4-52 (254)
354 COG0373 HemA Glutamyl-tRNA red 73.8 9.2 0.0002 27.9 4.7 65 23-88 177-245 (414)
355 PTZ00387 epsilon tubulin; Prov 73.8 7.4 0.00016 28.6 4.3 41 10-52 122-167 (465)
356 cd02187 beta_tubulin The tubul 73.7 7 0.00015 28.3 4.1 36 21-56 129-170 (425)
357 cd02189 delta_tubulin The tubu 73.5 7.7 0.00017 28.3 4.3 43 12-56 119-167 (446)
358 PLN02166 dTDP-glucose 4,6-dehy 73.4 19 0.0004 26.1 6.2 62 24-86 120-189 (436)
359 KOG2352 Predicted spermine/spe 73.2 2.1 4.5E-05 31.7 1.3 42 23-64 295-337 (482)
360 PRK06475 salicylate hydroxylas 73.1 6.7 0.00014 27.6 3.9 31 25-55 3-33 (400)
361 PLN02206 UDP-glucuronate decar 72.8 16 0.00036 26.4 5.9 61 25-86 120-188 (442)
362 PRK11728 hydroxyglutarate oxid 72.7 7.7 0.00017 27.2 4.1 30 26-55 4-35 (393)
363 cd05213 NAD_bind_Glutamyl_tRNA 72.7 13 0.00029 25.5 5.2 65 23-88 177-245 (311)
364 PRK06847 hypothetical protein; 72.4 8.7 0.00019 26.5 4.3 32 24-55 4-35 (375)
365 PRK00141 murD UDP-N-acetylmura 72.3 20 0.00044 26.1 6.2 65 23-88 14-81 (473)
366 PF06016 Reovirus_L2: Reovirus 71.6 8.4 0.00018 31.8 4.4 63 22-87 821-889 (1289)
367 KOG1209 1-Acyl dihydroxyaceton 71.6 12 0.00026 25.4 4.5 41 22-62 5-49 (289)
368 PLN03013 cysteine synthase 71.6 17 0.00038 26.5 5.7 46 5-55 266-315 (429)
369 cd02186 alpha_tubulin The tubu 71.2 8.4 0.00018 28.0 4.1 41 12-54 124-169 (434)
370 PRK12615 galactose-6-phosphate 70.8 7.4 0.00016 24.9 3.3 39 27-65 60-98 (171)
371 PRK08163 salicylate hydroxylas 70.8 9.7 0.00021 26.5 4.3 32 24-55 4-35 (396)
372 PRK06912 acoL dihydrolipoamide 70.7 8.5 0.00018 27.8 4.0 30 26-55 2-31 (458)
373 PF07101 DUF1363: Protein of u 70.5 1.7 3.8E-05 25.4 0.4 24 27-50 6-30 (124)
374 KOG1227 Putative methyltransfe 70.3 1.3 2.8E-05 31.1 -0.2 66 23-88 194-269 (351)
375 PRK07326 short chain dehydroge 70.3 14 0.00031 23.5 4.7 53 24-77 6-65 (237)
376 PRK06545 prephenate dehydrogen 70.3 13 0.00028 26.1 4.8 30 26-55 2-33 (359)
377 COG1232 HemY Protoporphyrinoge 70.2 9 0.00019 28.1 4.0 30 26-55 2-33 (444)
378 PLN02661 Putative thiazole syn 70.2 11 0.00023 27.0 4.3 31 25-55 93-124 (357)
379 PF03807 F420_oxidored: NADP o 70.0 1 2.2E-05 25.1 -0.7 56 33-88 6-68 (96)
380 PRK08267 short chain dehydroge 70.0 12 0.00027 24.3 4.4 51 26-77 3-59 (260)
381 PLN00222 tubulin gamma chain; 69.9 9.4 0.0002 28.0 4.1 41 13-55 126-171 (454)
382 PF01494 FAD_binding_3: FAD bi 69.8 8.8 0.00019 25.7 3.8 30 26-55 3-32 (356)
383 PRK06753 hypothetical protein; 69.7 8.6 0.00019 26.5 3.8 30 26-55 2-31 (373)
384 COG0248 GppA Exopolyphosphatas 69.6 5.2 0.00011 29.7 2.8 30 6-38 115-144 (492)
385 COG0698 RpiB Ribose 5-phosphat 69.5 8.2 0.00018 24.3 3.2 39 26-65 60-99 (151)
386 PLN00221 tubulin alpha chain; 69.4 8.6 0.00019 28.1 3.8 42 9-52 122-168 (450)
387 TIGR01119 lacB galactose-6-pho 69.3 7.9 0.00017 24.8 3.2 39 27-65 60-98 (171)
388 PRK06101 short chain dehydroge 69.3 14 0.0003 23.9 4.5 51 26-77 3-57 (240)
389 PTZ00335 tubulin alpha chain; 68.8 9.1 0.0002 28.0 3.8 43 10-54 123-170 (448)
390 PRK07236 hypothetical protein; 68.8 11 0.00025 26.2 4.3 32 24-55 6-37 (386)
391 PTZ00215 ribose 5-phosphate is 68.7 8.3 0.00018 24.2 3.2 39 27-65 64-102 (151)
392 PRK08125 bifunctional UDP-gluc 68.5 14 0.00031 28.1 4.9 62 24-86 315-387 (660)
393 cd01065 NAD_bind_Shikimate_DH 68.4 15 0.00032 22.0 4.3 35 23-59 18-56 (155)
394 PRK08622 galactose-6-phosphate 68.2 8.2 0.00018 24.7 3.1 39 27-65 60-98 (171)
395 cd08237 ribitol-5-phosphate_DH 68.1 17 0.00038 24.9 5.0 43 22-64 162-207 (341)
396 PLN02927 antheraxanthin epoxid 68.0 11 0.00023 29.2 4.2 33 23-55 80-112 (668)
397 PRK10637 cysG siroheme synthas 67.9 16 0.00035 26.6 5.0 64 23-87 11-78 (457)
398 COG1088 RfbB dTDP-D-glucose 4, 67.7 24 0.00053 24.9 5.5 46 32-77 7-62 (340)
399 PRK06153 hypothetical protein; 67.5 12 0.00025 27.2 4.1 31 24-54 176-207 (393)
400 COG4301 Uncharacterized conser 67.4 19 0.00042 24.9 4.9 38 23-60 78-120 (321)
401 PF06406 StbA: StbA protein; 67.0 9.4 0.0002 26.4 3.5 49 7-57 258-308 (318)
402 TIGR01035 hemA glutamyl-tRNA r 66.9 21 0.00045 25.7 5.3 33 23-55 179-212 (417)
403 PLN02819 lysine-ketoglutarate 66.5 30 0.00066 28.3 6.5 64 24-87 569-654 (1042)
404 PF13450 NAD_binding_8: NAD(P) 66.4 10 0.00022 20.0 2.9 26 30-55 2-27 (68)
405 PF13241 NAD_binding_7: Putati 66.1 22 0.00048 20.2 6.1 61 23-88 6-67 (103)
406 PRK09126 hypothetical protein; 65.7 12 0.00025 26.1 3.8 30 26-55 5-34 (392)
407 PRK07045 putative monooxygenas 65.6 13 0.00029 25.9 4.1 32 24-55 5-36 (388)
408 PLN03209 translocon at the inn 65.6 53 0.0012 25.1 7.3 64 23-87 79-165 (576)
409 TIGR02032 GG-red-SF geranylger 65.5 13 0.00029 24.3 3.9 29 27-55 3-31 (295)
410 PRK05868 hypothetical protein; 65.4 11 0.00023 26.4 3.6 31 25-55 2-32 (372)
411 COG0569 TrkA K+ transport syst 65.3 24 0.00052 23.2 5.0 60 26-87 2-72 (225)
412 PRK13512 coenzyme A disulfide 64.9 15 0.00032 26.4 4.3 31 25-55 2-34 (438)
413 PRK06194 hypothetical protein; 64.8 28 0.0006 23.0 5.4 53 24-77 6-66 (287)
414 KOG2811 Uncharacterized conser 64.2 27 0.00058 25.4 5.3 31 25-55 184-217 (420)
415 TIGR02053 MerA mercuric reduct 64.1 13 0.00029 26.7 3.9 29 27-55 3-31 (463)
416 COG1568 Predicted methyltransf 63.9 20 0.00044 25.2 4.5 61 25-86 154-226 (354)
417 PTZ00383 malate:quinone oxidor 63.8 14 0.0003 27.4 4.0 32 25-56 46-79 (497)
418 COG1171 IlvA Threonine dehydra 63.6 29 0.00062 24.8 5.4 48 5-55 161-210 (347)
419 PRK08013 oxidoreductase; Provi 63.5 13 0.00028 26.2 3.7 31 25-55 4-34 (400)
420 PRK06370 mercuric reductase; V 63.5 14 0.00031 26.6 4.0 31 25-55 6-36 (463)
421 PF02541 Ppx-GppA: Ppx/GppA ph 63.4 9.6 0.00021 25.7 3.0 13 22-34 111-123 (285)
422 PF01234 NNMT_PNMT_TEMT: NNMT/ 63.3 5.7 0.00012 27.0 1.8 33 23-57 56-90 (256)
423 KOG2352 Predicted spermine/spe 63.0 35 0.00076 25.5 5.8 61 26-88 51-121 (482)
424 TIGR01181 dTDP_gluc_dehyt dTDP 63.0 23 0.00049 23.5 4.7 46 32-77 6-61 (317)
425 PRK07538 hypothetical protein; 62.9 14 0.00031 26.0 3.9 30 26-55 2-31 (413)
426 PRK07364 2-octaprenyl-6-methox 62.9 17 0.00037 25.5 4.2 32 24-55 18-49 (415)
427 COG0451 WcaG Nucleoside-diphos 62.8 11 0.00024 25.0 3.2 48 27-77 3-53 (314)
428 PF04820 Trp_halogenase: Trypt 62.5 16 0.00034 26.6 4.1 31 26-56 1-34 (454)
429 PRK07588 hypothetical protein; 62.3 14 0.00031 25.7 3.8 30 26-55 2-31 (391)
430 PRK06180 short chain dehydroge 62.2 25 0.00054 23.2 4.8 52 25-77 5-61 (277)
431 PTZ00318 NADH dehydrogenase-li 62.2 18 0.00039 25.8 4.3 33 23-55 9-41 (424)
432 PLN02356 phosphateglycerate ki 62.2 36 0.00078 24.9 5.8 43 8-55 239-285 (423)
433 PRK07608 ubiquinone biosynthes 62.0 20 0.00044 24.8 4.4 32 24-55 5-36 (388)
434 PLN02662 cinnamyl-alcohol dehy 61.9 17 0.00037 24.4 4.0 52 25-77 5-66 (322)
435 TIGR01988 Ubi-OHases Ubiquinon 61.7 17 0.00037 25.0 4.0 29 27-55 2-30 (385)
436 PRK06482 short chain dehydroge 61.7 24 0.00052 23.2 4.6 51 26-77 4-59 (276)
437 PRK06617 2-octaprenyl-6-methox 61.7 16 0.00034 25.5 3.8 30 26-55 3-32 (374)
438 PRK04663 murD UDP-N-acetylmura 61.5 35 0.00075 24.6 5.6 62 25-88 8-75 (438)
439 PRK05786 fabG 3-ketoacyl-(acyl 61.5 39 0.00085 21.4 6.2 53 24-77 5-64 (238)
440 PRK08020 ubiF 2-octaprenyl-3-m 61.1 20 0.00043 25.0 4.3 32 24-55 5-36 (391)
441 PRK10538 malonic semialdehyde 60.9 23 0.00051 22.9 4.4 46 32-77 7-57 (248)
442 TIGR01984 UbiH 2-polyprenyl-6- 60.8 18 0.0004 25.0 4.1 29 27-55 2-31 (382)
443 cd05188 MDR Medium chain reduc 60.6 41 0.0009 21.4 5.7 40 22-62 133-174 (271)
444 COG3510 CmcI Cephalosporin hyd 60.4 19 0.0004 24.0 3.7 56 22-77 68-129 (237)
445 PRK06116 glutathione reductase 60.4 17 0.00037 26.0 4.0 30 26-55 6-35 (450)
446 PF07942 N2227: N2227-like pro 60.3 47 0.001 22.8 5.8 34 23-58 56-90 (270)
447 TIGR02360 pbenz_hydroxyl 4-hyd 60.3 18 0.00039 25.5 4.0 31 25-55 3-33 (390)
448 PRK00045 hemA glutamyl-tRNA re 60.1 40 0.00088 24.3 5.8 65 23-88 181-249 (423)
449 TIGR03219 salicylate_mono sali 60.0 16 0.00034 25.8 3.7 30 26-55 2-32 (414)
450 PRK08177 short chain dehydroge 59.9 16 0.00036 23.2 3.5 51 26-77 3-56 (225)
451 PLN00141 Tic62-NAD(P)-related 59.9 46 0.00099 21.7 6.9 64 23-87 16-91 (251)
452 PRK06949 short chain dehydroge 59.7 44 0.00096 21.5 5.7 53 24-77 9-69 (258)
453 PRK07023 short chain dehydroge 59.7 27 0.00057 22.4 4.5 51 26-77 3-56 (243)
454 PRK07251 pyridine nucleotide-d 59.7 19 0.0004 25.8 4.0 30 26-55 5-34 (438)
455 PRK08850 2-octaprenyl-6-methox 59.6 16 0.00036 25.6 3.7 31 25-55 5-35 (405)
456 PRK05714 2-octaprenyl-3-methyl 59.6 18 0.00038 25.4 3.8 30 26-55 4-33 (405)
457 PRK08639 threonine dehydratase 59.4 36 0.00077 24.6 5.4 48 6-55 164-214 (420)
458 PF03141 Methyltransf_29: Puta 59.4 7.9 0.00017 28.9 2.1 64 21-89 363-435 (506)
459 PRK06115 dihydrolipoamide dehy 59.4 18 0.0004 26.2 4.0 30 26-55 5-34 (466)
460 PRK08849 2-octaprenyl-3-methyl 59.4 17 0.00036 25.5 3.7 31 25-55 4-34 (384)
461 PRK12429 3-hydroxybutyrate deh 59.3 26 0.00056 22.5 4.4 52 25-77 5-64 (258)
462 PRK14045 1-aminocyclopropane-1 59.3 32 0.00069 23.9 5.0 29 27-55 187-219 (329)
463 PRK12384 sorbitol-6-phosphate 59.3 32 0.0007 22.2 4.9 52 25-77 3-64 (259)
464 KOG1250 Threonine/serine dehyd 59.2 36 0.00078 25.1 5.2 48 5-55 201-250 (457)
465 PTZ00117 malate dehydrogenase; 59.1 33 0.00072 23.8 5.1 64 24-88 5-80 (319)
466 PRK08293 3-hydroxybutyryl-CoA 59.0 25 0.00054 23.7 4.4 38 25-62 4-42 (287)
467 PF01358 PARP_regulatory: Poly 58.9 18 0.0004 25.2 3.7 53 23-77 58-115 (294)
468 TIGR01118 lacA galactose-6-pho 58.9 11 0.00024 23.4 2.4 33 32-64 63-95 (141)
469 PRK08264 short chain dehydroge 58.9 36 0.00078 21.7 5.0 51 24-77 6-60 (238)
470 COG5023 Tubulin [Cytoskeleton] 58.9 19 0.00041 26.2 3.8 35 21-55 130-169 (443)
471 PTZ00153 lipoamide dehydrogena 58.8 17 0.00037 28.0 3.8 30 26-55 118-147 (659)
472 COG3007 Uncharacterized paraqu 58.5 20 0.00044 25.4 3.8 36 22-57 39-78 (398)
473 PRK05976 dihydrolipoamide dehy 58.5 19 0.00042 26.0 4.0 31 25-55 5-35 (472)
474 PRK07818 dihydrolipoamide dehy 58.5 19 0.00042 26.0 3.9 30 26-55 6-35 (466)
475 PF12831 FAD_oxidored: FAD dep 58.4 14 0.0003 26.6 3.2 29 27-55 2-30 (428)
476 TIGR01421 gluta_reduc_1 glutat 58.3 16 0.00035 26.3 3.6 30 26-55 4-33 (450)
477 TIGR03192 benz_CoA_bzdQ benzoy 58.2 22 0.00047 24.7 4.0 22 23-44 125-171 (293)
478 PRK12613 galactose-6-phosphate 58.0 12 0.00025 23.3 2.4 33 32-64 62-94 (141)
479 PTZ00010 tubulin beta chain; P 57.8 19 0.00041 26.3 3.8 38 13-52 124-166 (445)
480 TIGR01320 mal_quin_oxido malat 57.8 21 0.00045 26.3 4.0 29 27-55 3-33 (483)
481 PRK07102 short chain dehydroge 57.7 24 0.00053 22.6 4.0 52 25-77 2-62 (243)
482 PLN02565 cysteine synthase 57.6 40 0.00086 23.4 5.2 45 6-55 159-207 (322)
483 KOG1276 Protoporphyrinogen oxi 57.5 26 0.00057 26.0 4.4 33 23-55 10-44 (491)
484 PRK05884 short chain dehydroge 57.4 19 0.00041 23.1 3.5 50 27-77 3-55 (223)
485 PRK12483 threonine dehydratase 57.2 44 0.00094 25.1 5.6 47 6-55 173-221 (521)
486 PRK03369 murD UDP-N-acetylmura 57.0 47 0.001 24.4 5.8 64 23-88 11-77 (488)
487 PRK06079 enoyl-(acyl carrier p 56.8 49 0.0011 21.5 5.4 54 24-77 7-66 (252)
488 TIGR03201 dearomat_had 6-hydro 56.8 52 0.0011 22.6 5.7 43 21-64 164-208 (349)
489 PRK01747 mnmC bifunctional tRN 56.8 14 0.0003 28.1 3.1 32 24-55 58-101 (662)
490 PRK11031 guanosine pentaphosph 56.5 12 0.00025 27.7 2.6 26 10-38 122-147 (496)
491 cd06449 ACCD Aminocyclopropane 56.5 41 0.00088 23.0 5.1 47 7-55 159-209 (307)
492 PF14737 DUF4470: Domain of un 56.2 36 0.00078 19.3 5.7 41 21-61 21-68 (100)
493 KOG1800 Ferredoxin/adrenodoxin 56.1 34 0.00074 25.2 4.7 36 22-57 18-56 (468)
494 TIGR01424 gluta_reduc_2 glutat 56.1 21 0.00046 25.6 3.8 30 26-55 4-33 (446)
495 PRK06124 gluconate 5-dehydroge 56.0 52 0.0011 21.2 5.6 53 24-77 11-71 (256)
496 PRK10458 DNA cytosine methylas 56.0 34 0.00074 25.3 4.9 35 25-61 89-125 (467)
497 PRK08243 4-hydroxybenzoate 3-m 56.0 23 0.0005 24.8 3.9 31 25-55 3-33 (392)
498 PRK03910 D-cysteine desulfhydr 55.6 34 0.00075 23.7 4.7 49 7-55 168-218 (331)
499 PRK09564 coenzyme A disulfide 55.6 27 0.00058 24.9 4.3 30 26-55 2-33 (444)
500 PTZ00082 L-lactate dehydrogena 55.5 60 0.0013 22.6 5.9 63 24-87 6-80 (321)
No 1
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.87 E-value=2.6e-22 Score=132.16 Aligned_cols=87 Identities=31% Similarity=0.659 Sum_probs=75.3
Q ss_pred CCcchhhhH-HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCCC
Q 034578 1 MACTTKITM-KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAI 79 (90)
Q Consensus 1 m~~~~~~~~-~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~~ 79 (90)
|+..++..+ +.+++.++ +++..+|||||||+|.++.++++++|+++++++|+|++++.+++.+|+++++||||+++
T Consensus 80 m~~~~~~~~~~~~~~~~d---~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v~~~~~~~~rv~~~~gd~f~~~ 156 (241)
T PF00891_consen 80 MAEYSRLNAFDILLEAFD---FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDLPEVIEQAKEADRVEFVPGDFFDPL 156 (241)
T ss_dssp HHHHHHHHHHHHHHHHST---TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE-HHHHCCHHHTTTEEEEES-TTTCC
T ss_pred HHhhhhcchhhhhhcccc---ccCccEEEeccCcchHHHHHHHHHCCCCcceeeccHhhhhccccccccccccccHHhhh
Confidence 344555566 77788888 77889999999999999999999999999999999999999888999999999999989
Q ss_pred CcccEEEeecC
Q 034578 80 PNADAVFMKVA 90 (90)
Q Consensus 80 p~~D~i~l~~v 90 (90)
|.+|+|+++||
T Consensus 157 P~~D~~~l~~v 167 (241)
T PF00891_consen 157 PVADVYLLRHV 167 (241)
T ss_dssp SSESEEEEESS
T ss_pred ccccceeeehh
Confidence 88999999987
No 2
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.71 E-value=5.4e-17 Score=110.24 Aligned_cols=81 Identities=23% Similarity=0.526 Sum_probs=69.2
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-C
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-A 78 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~ 78 (90)
...+.+++..+ +++..+|||||||+|.++..+++++|+++++++|+|.+++.+++ .+|++++.+|+++ +
T Consensus 136 ~~~~~l~~~~~---~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~ 212 (306)
T TIGR02716 136 FAIQLLLEEAK---LDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNLPGAIDLVNENAAEKGVADRMRGIAVDIYKES 212 (306)
T ss_pred hHHHHHHHHcC---CCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEecHHHHHHHHHHHHhCCccceEEEEecCccCCC
Confidence 34556667666 67788999999999999999999999999999999999887754 3689999999997 6
Q ss_pred CCcccEEEeecC
Q 034578 79 IPNADAVFMKVA 90 (90)
Q Consensus 79 ~p~~D~i~l~~v 90 (90)
+|.+|+|+++++
T Consensus 213 ~~~~D~v~~~~~ 224 (306)
T TIGR02716 213 YPEADAVLFCRI 224 (306)
T ss_pred CCCCCEEEeEhh
Confidence 777999998874
No 3
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.61 E-value=2.5e-15 Score=88.03 Aligned_cols=66 Identities=23% Similarity=0.428 Sum_probs=57.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecC-CC-CC-CcccEEEeec
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDM-FD-AI-PNADAVFMKV 89 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~-~~-~~-p~~D~i~l~~ 89 (90)
..+|||+|||+|.++..+++++|..+++++|+ |.+++.+++ .+|++++.+|+ .. .. ++||+|++..
T Consensus 2 ~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 2 GGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSG 78 (112)
T ss_dssp TCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECS
T ss_pred CCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECC
Confidence 57899999999999999999999999999999 999988765 48999999999 33 33 3599999864
No 4
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.58 E-value=4.2e-15 Score=102.06 Aligned_cols=88 Identities=49% Similarity=0.881 Sum_probs=79.6
Q ss_pred CCcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCC-CCeeEEEecCCCCC
Q 034578 1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTH-EGVSHVGGDMFDAI 79 (90)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~-~rv~~~~~d~~~~~ 79 (90)
|...+....+.+++.+. +|+.....||+|+|.|.++..++..||+++++.+|+|.+++.+... +.|+.+.||+|+..
T Consensus 157 m~~l~~~~~~~il~~~~--Gf~~v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~~gV~~v~gdmfq~~ 234 (342)
T KOG3178|consen 157 MSFLSTLVMKKILEVYT--GFKGVNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLAPGVEHVAGDMFQDT 234 (342)
T ss_pred HHHHHHHHHHhhhhhhc--ccccCceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhcCCcceecccccccC
Confidence 34566777788888888 4888999999999999999999999999999999999999998876 78999999999999
Q ss_pred CcccEEEeecC
Q 034578 80 PNADAVFMKVA 90 (90)
Q Consensus 80 p~~D~i~l~~v 90 (90)
|.+|+|++.||
T Consensus 235 P~~daI~mkWi 245 (342)
T KOG3178|consen 235 PKGDAIWMKWI 245 (342)
T ss_pred CCcCeEEEEee
Confidence 99999999997
No 5
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.55 E-value=2e-14 Score=97.19 Aligned_cols=82 Identities=21% Similarity=0.328 Sum_probs=66.9
Q ss_pred cchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecC
Q 034578 3 CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDM 75 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~ 75 (90)
..++.+++.++....+ ... +|+|+|||||++++.+++++|+++++++|+ |.+++.|+++ .|+.++.+|+
T Consensus 94 ~dTe~Lve~~l~~~~~---~~~-~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l~~~~~~~~dl 169 (280)
T COG2890 94 PDTELLVEAALALLLQ---LDK-RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAERNGLVRVLVVQSDL 169 (280)
T ss_pred CchHHHHHHHHHhhhh---cCC-cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCCccEEEEeeec
Confidence 3566677777644442 222 899999999999999999999999999999 9999998762 5677888899
Q ss_pred CCCCCc-ccEEEee
Q 034578 76 FDAIPN-ADAVFMK 88 (90)
Q Consensus 76 ~~~~p~-~D~i~l~ 88 (90)
|+++++ ||+|+.+
T Consensus 170 f~~~~~~fDlIVsN 183 (280)
T COG2890 170 FEPLRGKFDLIVSN 183 (280)
T ss_pred ccccCCceeEEEeC
Confidence 998765 9999876
No 6
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.53 E-value=4.4e-14 Score=93.83 Aligned_cols=79 Identities=23% Similarity=0.354 Sum_probs=66.2
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCC--ccc
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIP--NAD 83 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p--~~D 83 (90)
.....+++.++ ..+..+|||||||+|.++..+++++|+.+++++|+ |.+++.+++. +++++.+|+.+..+ .+|
T Consensus 16 ~~~~~ll~~l~---~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~-~~~~~~~d~~~~~~~~~fD 91 (255)
T PRK14103 16 RPFYDLLARVG---AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER-GVDARTGDVRDWKPKPDTD 91 (255)
T ss_pred CHHHHHHHhCC---CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc-CCcEEEcChhhCCCCCCce
Confidence 34567788777 55678999999999999999999999999999999 9999998764 58899999865322 399
Q ss_pred EEEeec
Q 034578 84 AVFMKV 89 (90)
Q Consensus 84 ~i~l~~ 89 (90)
+|+++.
T Consensus 92 ~v~~~~ 97 (255)
T PRK14103 92 VVVSNA 97 (255)
T ss_pred EEEEeh
Confidence 999875
No 7
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.48 E-value=3.5e-13 Score=89.42 Aligned_cols=81 Identities=21% Similarity=0.354 Sum_probs=67.7
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCCCCC--c
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFDAIP--N 81 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~~~p--~ 81 (90)
...+..+++.++ ..+..+|||+|||+|.++..+++++|..+++++|+ |.+++.++++ ++++++.+|+.+..+ .
T Consensus 17 ~~~~~~ll~~~~---~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~d~~~~~~~~~ 93 (258)
T PRK01683 17 TRPARDLLARVP---LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRLPDCQFVEADIASWQPPQA 93 (258)
T ss_pred hcHHHHHHhhCC---CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhCCCCeEEECchhccCCCCC
Confidence 345677777777 56678999999999999999999999999999999 9999998774 679999999876333 3
Q ss_pred ccEEEeec
Q 034578 82 ADAVFMKV 89 (90)
Q Consensus 82 ~D~i~l~~ 89 (90)
+|+|+.+.
T Consensus 94 fD~v~~~~ 101 (258)
T PRK01683 94 LDLIFANA 101 (258)
T ss_pred ccEEEEcc
Confidence 99998764
No 8
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.47 E-value=2.6e-13 Score=83.86 Aligned_cols=67 Identities=24% Similarity=0.445 Sum_probs=57.1
Q ss_pred CCCeEEEecCCchHHHHHHH-HHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-C--CC-cccEEEeec
Q 034578 23 NIRSMVDVGGGTGTVLAEIV-KSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-A--IP-NADAVFMKV 89 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~-~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~--~p-~~D~i~l~~ 89 (90)
+..+|||+|||+|.++..++ +.+|..+++++|+ |.+++.|++ .++++|..+|+.+ + ++ .+|+|+...
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLDNIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTSTTEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccccccccceEEeehhccccccCCCeeEEEEcC
Confidence 46799999999999999999 5589999999999 999999876 2689999999998 4 33 499999864
No 9
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.47 E-value=3.2e-13 Score=89.44 Aligned_cols=67 Identities=25% Similarity=0.352 Sum_probs=60.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-CCCc--ccEEEeec
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-AIPN--ADAVFMKV 89 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~~p~--~D~i~l~~ 89 (90)
+..+|||||||||.++..+++..+..+++++|+ +.|++.+++. ..++|+.+|..+ |+|+ +|+|+++.
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~i~fv~~dAe~LPf~D~sFD~vt~~f 127 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQNVEFVVGDAENLPFPDNSFDAVTISF 127 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccceEEEEechhhCCCCCCccCEEEeee
Confidence 568999999999999999999999999999999 9999999862 239999999988 8886 99999874
No 10
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.46 E-value=7e-14 Score=91.26 Aligned_cols=77 Identities=18% Similarity=0.329 Sum_probs=66.9
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCCCCC--cccE
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFDAIP--NADA 84 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~~~p--~~D~ 84 (90)
+..++...+ .....+|+|+|||+|.-...|+++||.++++++|. |.|++.|++. ++++|..+|..+.-| +.|+
T Consensus 19 a~dLla~Vp---~~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rlp~~~f~~aDl~~w~p~~~~dl 95 (257)
T COG4106 19 ARDLLARVP---LERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRLPDATFEEADLRTWKPEQPTDL 95 (257)
T ss_pred HHHHHhhCC---ccccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhCCCCceecccHhhcCCCCccch
Confidence 456777788 77889999999999999999999999999999999 9999999764 889999999988555 3788
Q ss_pred EEee
Q 034578 85 VFMK 88 (90)
Q Consensus 85 i~l~ 88 (90)
++.+
T Consensus 96 lfaN 99 (257)
T COG4106 96 LFAN 99 (257)
T ss_pred hhhh
Confidence 7654
No 11
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.46 E-value=5.2e-13 Score=86.63 Aligned_cols=68 Identities=21% Similarity=0.381 Sum_probs=59.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-CCCeeEEEecCCCCCCc--ccEEEeec
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-HEGVSHVGGDMFDAIPN--ADAVFMKV 89 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~~~p~--~D~i~l~~ 89 (90)
.+..+|||+|||+|.++..+++..|..+++++|+ |.+++.|++ .+++++..+|+.++.+. +|+|+++.
T Consensus 42 ~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~~~~~~~~d~~~~~~~~sfD~V~~~~ 113 (204)
T TIGR03587 42 PKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLPNINIIQGSLFDPFKDNFFDLVLTKG 113 (204)
T ss_pred CCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCCCCcEEEeeccCCCCCCCEEEEEECC
Confidence 3567899999999999999999889999999999 999999987 46788999999886543 99999765
No 12
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.45 E-value=9.6e-13 Score=83.84 Aligned_cols=74 Identities=22% Similarity=0.435 Sum_probs=61.1
Q ss_pred HHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCCCCc-cc
Q 034578 12 FVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDAIPN-AD 83 (90)
Q Consensus 12 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~~p~-~D 83 (90)
+++.++ ..+..+|||+|||+|.++..+++++|+.+++++|+ |.+++.+++ ..+++++.+|....++. +|
T Consensus 23 ~~~~l~---~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~i~~~~~d~~~~~~~~~D 99 (187)
T PRK08287 23 ALSKLE---LHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGNIDIIPGEAPIELPGKAD 99 (187)
T ss_pred HHHhcC---CCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCCeEEEecCchhhcCcCCC
Confidence 345555 55678999999999999999999999999999999 999888865 15789999998655554 99
Q ss_pred EEEee
Q 034578 84 AVFMK 88 (90)
Q Consensus 84 ~i~l~ 88 (90)
+|++.
T Consensus 100 ~v~~~ 104 (187)
T PRK08287 100 AIFIG 104 (187)
T ss_pred EEEEC
Confidence 99875
No 13
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.44 E-value=2.4e-13 Score=85.79 Aligned_cols=66 Identities=26% Similarity=0.440 Sum_probs=57.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCCC-c-ccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAIP-N-ADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~p-~-~D~i~l~ 88 (90)
...++||+|||+|.++..+++++|+.+++++|+ |.+++.++++ ++++++..|+++.++ . +|+|+++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~v~~~~~d~~~~~~~~~fD~Iv~N 105 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLENVEVVQSDLFEALPDGKFDLIVSN 105 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTTEEEEESSTTTTCCTTCEEEEEE-
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccccccccccccccccccceeEEEEc
Confidence 467899999999999999999999999999999 9999988761 339999999999765 3 9999985
No 14
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.41 E-value=1.6e-12 Score=87.79 Aligned_cols=82 Identities=18% Similarity=0.385 Sum_probs=65.1
Q ss_pred hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCC
Q 034578 5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMF 76 (90)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~ 76 (90)
++.+.+.+++.+.. ..+..+|||+|||+|.++..+++.+|+.+++++|+ +.+++.|+++ .+++++.+|++
T Consensus 98 te~lv~~~l~~~~~--~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~ 175 (284)
T TIGR00536 98 TEELVEKALASLIS--QNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLF 175 (284)
T ss_pred cHHHHHHHHHHhhh--cCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchh
Confidence 45566666655431 22226899999999999999999999999999999 9999888762 46999999999
Q ss_pred CCCC--cccEEEee
Q 034578 77 DAIP--NADAVFMK 88 (90)
Q Consensus 77 ~~~p--~~D~i~l~ 88 (90)
++++ .+|+|+.+
T Consensus 176 ~~~~~~~fDlIvsN 189 (284)
T TIGR00536 176 EPLAGQKIDIIVSN 189 (284)
T ss_pred ccCcCCCccEEEEC
Confidence 8765 39999875
No 15
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.40 E-value=2.3e-12 Score=87.25 Aligned_cols=66 Identities=20% Similarity=0.435 Sum_probs=58.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCCc--ccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIPN--ADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p~--~D~i~l~ 88 (90)
+..+|||+|||+|.++..+++++|+.+++++|+ +.+++.|+++ ++++++.+|++++++. +|+|+++
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~N 196 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSN 196 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEEC
Confidence 457899999999999999999999999999999 9999988752 5799999999886653 8999974
No 16
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.39 E-value=2e-12 Score=90.58 Aligned_cols=77 Identities=18% Similarity=0.301 Sum_probs=62.9
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---------CCeeEEEecCCCC
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---------EGVSHVGGDMFDA 78 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---------~rv~~~~~d~~~~ 78 (90)
.+-+++.++ .....+|||+|||+|.++..+++++|+.+++++|. +.+++.++++ .+++++.+|.++.
T Consensus 217 trllL~~lp---~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~ 293 (378)
T PRK15001 217 ARFFMQHLP---ENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSG 293 (378)
T ss_pred HHHHHHhCC---cccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEcccccc
Confidence 344666676 23346999999999999999999999999999999 8999888751 3789999999886
Q ss_pred CC--cccEEEee
Q 034578 79 IP--NADAVFMK 88 (90)
Q Consensus 79 ~p--~~D~i~l~ 88 (90)
++ .||+|+++
T Consensus 294 ~~~~~fDlIlsN 305 (378)
T PRK15001 294 VEPFRFNAVLCN 305 (378)
T ss_pred CCCCCEEEEEEC
Confidence 53 39999985
No 17
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.37 E-value=3e-12 Score=90.49 Aligned_cols=80 Identities=21% Similarity=0.319 Sum_probs=64.7
Q ss_pred chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCC
Q 034578 4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFD 77 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~ 77 (90)
.++.+++.+++.++ +..++||+|||+|.++..+++++|..+++++|+ |.+++.++++ .+++++.+|+++
T Consensus 237 eTE~LVe~aL~~l~-----~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g~rV~fi~gDl~e 311 (423)
T PRK14966 237 ETEHLVEAVLARLP-----ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLGARVEFAHGSWFD 311 (423)
T ss_pred cHHHHHHHhhhccC-----CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCcEEEEEcchhc
Confidence 34556666665554 346899999999999999999999999999999 9999988762 479999999987
Q ss_pred C-CC---cccEEEee
Q 034578 78 A-IP---NADAVFMK 88 (90)
Q Consensus 78 ~-~p---~~D~i~l~ 88 (90)
. .+ .+|+|+++
T Consensus 312 ~~l~~~~~FDLIVSN 326 (423)
T PRK14966 312 TDMPSEGKWDIIVSN 326 (423)
T ss_pred cccccCCCccEEEEC
Confidence 3 32 28999875
No 18
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.37 E-value=4.2e-12 Score=82.91 Aligned_cols=77 Identities=18% Similarity=0.251 Sum_probs=62.1
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCC
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIP 80 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p 80 (90)
+.+++.++ ..+..+|||+|||+|.++..+++.+ |..+++++|+ |.+++.+++ .++++++.+|..+ +++
T Consensus 35 ~~~l~~l~---~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 111 (231)
T TIGR02752 35 KDTMKRMN---VQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLHNVELVHGNAMELPFD 111 (231)
T ss_pred HHHHHhcC---CCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCCceEEEEechhcCCCC
Confidence 45566665 5566899999999999999999986 6789999999 999887764 2579999999977 454
Q ss_pred c--ccEEEeec
Q 034578 81 N--ADAVFMKV 89 (90)
Q Consensus 81 ~--~D~i~l~~ 89 (90)
. +|+|++..
T Consensus 112 ~~~fD~V~~~~ 122 (231)
T TIGR02752 112 DNSFDYVTIGF 122 (231)
T ss_pred CCCccEEEEec
Confidence 3 89998753
No 19
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.37 E-value=1.5e-12 Score=86.12 Aligned_cols=69 Identities=28% Similarity=0.411 Sum_probs=50.7
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCCc--ccEEEeec
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIPN--ADAVFMKV 89 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p~--~D~i~l~~ 89 (90)
..+..+|||+|||||.++..++++. |+.+++++|+ +.|++.|++ ..+++++.+|..+ ++|+ +|+|+++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~i~~v~~da~~lp~~d~sfD~v~~~f 124 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQNIEFVQGDAEDLPFPDNSFDAVTCSF 124 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--SEEEEE-BTTB--S-TT-EEEEEEES
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCCeeEEEcCHHHhcCCCCceeEEEHHh
Confidence 3456799999999999999999885 6789999999 999999875 2589999999988 7765 99999874
No 20
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.37 E-value=3.5e-12 Score=87.23 Aligned_cols=64 Identities=20% Similarity=0.423 Sum_probs=56.9
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCC--cccEEEee
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIP--NADAVFMK 88 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p--~~D~i~l~ 88 (90)
.+|||+|||+|.++..+++.+|+.+++++|+ |.+++.|+++ ++++++.+|+++.+| .+|+|+++
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsN 208 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSN 208 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEEC
Confidence 6899999999999999999999999999999 9999988752 479999999988665 39999975
No 21
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.36 E-value=4.7e-12 Score=81.28 Aligned_cols=67 Identities=22% Similarity=0.203 Sum_probs=56.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCC-cccEEEee
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIP-NADAVFMK 88 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p-~~D~i~l~ 88 (90)
++..+|||+|||+|.++..+++++|..+++++|. +.+++.+++ .++++++.+|..+ +.. .+|+|+++
T Consensus 44 ~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~i~~~~~d~~~~~~~~~fDlV~~~ 119 (187)
T PRK00107 44 PGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKNVTVVHGRAEEFGQEEKFDVVTSR 119 (187)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCCEEEEeccHhhCCCCCCccEEEEc
Confidence 3468999999999999999999999999999999 999988765 2459999999977 333 39999975
No 22
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.36 E-value=2e-12 Score=85.74 Aligned_cols=66 Identities=24% Similarity=0.288 Sum_probs=56.4
Q ss_pred CCCeEEEecCCchHHHHHHHHH--CCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCcccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKS--YPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPNADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~i~l~ 88 (90)
+..+|||||||+|.++..+++. +|+.+++++|+ |.|++.|++ ..+++++.+|+.+ +.+.+|+++++
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~~~~D~vv~~ 132 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAIENASMVVLN 132 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCCCCCCEEehh
Confidence 4578999999999999999884 68999999999 999999875 2479999999987 55668998865
No 23
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.35 E-value=5.3e-12 Score=85.75 Aligned_cols=76 Identities=14% Similarity=0.256 Sum_probs=63.4
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCCCc-
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAIPN- 81 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~p~- 81 (90)
+-+++.++ .....+|+|+|||.|.+++.+++.+|+.+++.+|. ..+++.++++ ++.++...|.+++.++
T Consensus 148 ~lLl~~l~---~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~~~v~~s~~~~~v~~k 224 (300)
T COG2813 148 RLLLETLP---PDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVENTEVWASNLYEPVEGK 224 (300)
T ss_pred HHHHHhCC---ccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCccEEEEeccccccccc
Confidence 45667777 34445999999999999999999999999999999 8899999873 3336788999998766
Q ss_pred ccEEEee
Q 034578 82 ADAVFMK 88 (90)
Q Consensus 82 ~D~i~l~ 88 (90)
||+|+++
T Consensus 225 fd~IisN 231 (300)
T COG2813 225 FDLIISN 231 (300)
T ss_pred ccEEEeC
Confidence 9999986
No 24
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.35 E-value=7.5e-12 Score=83.76 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=57.7
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC---------CCCeeEEEecCCC-CCCc--ccEEE
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT---------HEGVSHVGGDMFD-AIPN--ADAVF 86 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~d~~~-~~p~--~D~i~ 86 (90)
..+..+|||+|||+|.++..+++++ |..+++++|+ +.|++.|++ .++++++.+|..+ ++++ +|+|+
T Consensus 71 ~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~ 150 (261)
T PLN02233 71 AKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAIT 150 (261)
T ss_pred CCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEE
Confidence 4456799999999999999999885 6789999999 999998854 2479999999977 6664 99998
Q ss_pred eec
Q 034578 87 MKV 89 (90)
Q Consensus 87 l~~ 89 (90)
++.
T Consensus 151 ~~~ 153 (261)
T PLN02233 151 MGY 153 (261)
T ss_pred Eec
Confidence 864
No 25
>PLN02244 tocopherol O-methyltransferase
Probab=99.35 E-value=7.7e-12 Score=86.45 Aligned_cols=66 Identities=23% Similarity=0.283 Sum_probs=55.9
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCc--ccEEEee
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPN--ADAVFMK 88 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~--~D~i~l~ 88 (90)
.+..+|||||||+|.++..+++++ +.+++++|+ |.+++.+++ .++++++.+|+.+ +++. ||+|+..
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~-g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~ 193 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKY-GANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSM 193 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEEC
Confidence 456799999999999999999988 789999999 999887764 2579999999987 5553 9999874
No 26
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.34 E-value=4.4e-12 Score=83.51 Aligned_cols=67 Identities=21% Similarity=0.280 Sum_probs=56.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCcccEEEeec
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPNADAVFMKV 89 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~~D~i~l~~ 89 (90)
+..+|||+|||+|.++..+++++ |+.+++++|+ |.|++.|++ ..+++++.+|+.+ +++.+|+++++.
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~d~v~~~~ 130 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIKNASMVILNF 130 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCCCCCEEeeec
Confidence 45789999999999999999974 7899999999 999988865 2478999999987 566689887653
No 27
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.34 E-value=7e-12 Score=80.15 Aligned_cols=73 Identities=23% Similarity=0.383 Sum_probs=62.4
Q ss_pred HhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCC---CCcc
Q 034578 13 VSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDA---IPNA 82 (90)
Q Consensus 13 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~---~p~~ 82 (90)
+..+. +.+..+++|||||||+++++++..+|..+++++|. +++++..++ -++++++.||..+. +|.+
T Consensus 27 ls~L~---~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n~~vv~g~Ap~~L~~~~~~ 103 (187)
T COG2242 27 LSKLR---PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDNLEVVEGDAPEALPDLPSP 103 (187)
T ss_pred HHhhC---CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCcEEEEeccchHhhcCCCCC
Confidence 45555 67788999999999999999999999999999998 888887765 38999999998873 3458
Q ss_pred cEEEee
Q 034578 83 DAVFMK 88 (90)
Q Consensus 83 D~i~l~ 88 (90)
|.|++.
T Consensus 104 daiFIG 109 (187)
T COG2242 104 DAIFIG 109 (187)
T ss_pred CEEEEC
Confidence 999874
No 28
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.34 E-value=1.4e-11 Score=72.85 Aligned_cols=80 Identities=16% Similarity=0.249 Sum_probs=62.7
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD- 77 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~- 77 (90)
+.+...+++.+. .....+++|+|||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|...
T Consensus 5 ~~~~~~~~~~~~---~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 81 (124)
T TIGR02469 5 REVRALTLSKLR---LRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSNIVIVEGDAPEA 81 (124)
T ss_pred HHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCceEEEecccccc
Confidence 344555666666 44567999999999999999999999999999999 888887764 2578999898764
Q ss_pred --CCC-cccEEEee
Q 034578 78 --AIP-NADAVFMK 88 (90)
Q Consensus 78 --~~p-~~D~i~l~ 88 (90)
..+ .+|.|++.
T Consensus 82 ~~~~~~~~D~v~~~ 95 (124)
T TIGR02469 82 LEDSLPEPDRVFIG 95 (124)
T ss_pred ChhhcCCCCEEEEC
Confidence 222 49999875
No 29
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.34 E-value=4.7e-12 Score=82.23 Aligned_cols=86 Identities=24% Similarity=0.391 Sum_probs=65.9
Q ss_pred chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--CCeeEEEecCCC-CC
Q 034578 4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--EGVSHVGGDMFD-AI 79 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~rv~~~~~d~~~-~~ 79 (90)
.++..+..+++.+.........+|||+|||+|.++..+++..|..+++++|+ |.+++.+++. ++++++.+|+.+ ++
T Consensus 15 ~q~~~~~~l~~~~~~~~~~~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 94 (240)
T TIGR02072 15 IQREMAKRLLALLKEKGIFIPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLSENVQFICGDAEKLPL 94 (240)
T ss_pred HHHHHHHHHHHHhhhhccCCCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcCCCCeEEecchhhCCC
Confidence 3445566666666520013346899999999999999999999999999999 8888777653 578999999987 44
Q ss_pred C-c-ccEEEeec
Q 034578 80 P-N-ADAVFMKV 89 (90)
Q Consensus 80 p-~-~D~i~l~~ 89 (90)
+ + +|+|+.++
T Consensus 95 ~~~~fD~vi~~~ 106 (240)
T TIGR02072 95 EDSSFDLIVSNL 106 (240)
T ss_pred CCCceeEEEEhh
Confidence 4 3 89999864
No 30
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.33 E-value=8.5e-12 Score=83.18 Aligned_cols=83 Identities=20% Similarity=0.278 Sum_probs=63.9
Q ss_pred chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---CCeeEEEecCCCCC
Q 034578 4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---EGVSHVGGDMFDAI 79 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~d~~~~~ 79 (90)
.++.+++.++..++. .....++||+|||+|.++..+++.+|..+++++|+ |.+++.++++ ...+++.+|+++.+
T Consensus 69 ~Te~Lv~~~l~~~~~--~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~~~~~~~D~~~~l 146 (251)
T TIGR03704 69 RTEFLVDEAAALARP--RSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAGGTVHEGDLYDAL 146 (251)
T ss_pred cHHHHHHHHHHhhcc--cCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCEEEEeechhhc
Confidence 345566666654431 22345899999999999999999999999999999 9999988763 23689999998743
Q ss_pred C-----cccEEEee
Q 034578 80 P-----NADAVFMK 88 (90)
Q Consensus 80 p-----~~D~i~l~ 88 (90)
+ .+|+|+++
T Consensus 147 ~~~~~~~fDlVv~N 160 (251)
T TIGR03704 147 PTALRGRVDILAAN 160 (251)
T ss_pred chhcCCCEeEEEEC
Confidence 2 38999875
No 31
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.32 E-value=6.7e-12 Score=80.10 Aligned_cols=66 Identities=18% Similarity=0.242 Sum_probs=54.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCC-cccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIP-NADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p-~~D~i~l~ 88 (90)
+..++||+|||+|.++..+++.+|..+++++|. +.+++.+++ .++++++.+|+.+ ... .+|+|++.
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~i~~i~~d~~~~~~~~~fD~I~s~ 116 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNNVEIVNGRAEDFQHEEQFDVITSR 116 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCCeEEEecchhhccccCCccEEEeh
Confidence 367999999999999999999999999999999 888776653 2579999999977 222 49998865
No 32
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.31 E-value=1.4e-11 Score=82.14 Aligned_cols=81 Identities=20% Similarity=0.354 Sum_probs=65.4
Q ss_pred hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC
Q 034578 5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD 77 (90)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~ 77 (90)
++.+.+.++.... ..+..+|||+|||+|.++..+++..|..+++++|+ +.+++.+++ ..+++++.+|+++
T Consensus 93 te~l~~~~~~~~~---~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~~~~~~i~~~~~d~~~ 169 (275)
T PRK09328 93 TEELVEWALEALL---LKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKHGLGARVEFLQGDWFE 169 (275)
T ss_pred cHHHHHHHHHhcc---ccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhCCCCcEEEEEccccC
Confidence 4455666664444 34567899999999999999999999999999999 998888765 2579999999988
Q ss_pred CCC--cccEEEee
Q 034578 78 AIP--NADAVFMK 88 (90)
Q Consensus 78 ~~p--~~D~i~l~ 88 (90)
+++ .+|+|+.+
T Consensus 170 ~~~~~~fD~Iv~n 182 (275)
T PRK09328 170 PLPGGRFDLIVSN 182 (275)
T ss_pred cCCCCceeEEEEC
Confidence 654 39999874
No 33
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.31 E-value=1.2e-11 Score=81.82 Aligned_cols=80 Identities=15% Similarity=0.209 Sum_probs=63.9
Q ss_pred chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCC-CCC
Q 034578 4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFD-AIP 80 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~-~~p 80 (90)
.++..++.+++.++ ..+..+|||+|||+|.++..+.+. ..+++++|+ |.+++.+++. ....++.+|+.+ +++
T Consensus 26 ~q~~~a~~l~~~l~---~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~~D~s~~~l~~a~~~~~~~~~~~~d~~~~~~~ 100 (251)
T PRK10258 26 LQRQSADALLAMLP---QRKFTHVLDAGCGPGWMSRYWRER--GSQVTALDLSPPMLAQARQKDAADHYLAGDIESLPLA 100 (251)
T ss_pred HHHHHHHHHHHhcC---ccCCCeEEEeeCCCCHHHHHHHHc--CCeEEEEECCHHHHHHHHhhCCCCCEEEcCcccCcCC
Confidence 46667778888777 345689999999999999988774 578999999 9999988764 346788999976 554
Q ss_pred c--ccEEEee
Q 034578 81 N--ADAVFMK 88 (90)
Q Consensus 81 ~--~D~i~l~ 88 (90)
+ +|+|+.+
T Consensus 101 ~~~fD~V~s~ 110 (251)
T PRK10258 101 TATFDLAWSN 110 (251)
T ss_pred CCcEEEEEEC
Confidence 3 8999865
No 34
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.31 E-value=1.4e-11 Score=82.52 Aligned_cols=76 Identities=17% Similarity=0.357 Sum_probs=62.8
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CCCc-
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AIPN- 81 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~p~- 81 (90)
...+++.++ +.+..+|||||||+|..+..+++.+ ..+++++|+ |.+++.+++ .+++++..+|+.+ ++|.
T Consensus 41 ~~~~l~~l~---l~~~~~VLDiGcG~G~~a~~la~~~-~~~v~giD~s~~~~~~a~~~~~~~~~i~~~~~D~~~~~~~~~ 116 (263)
T PTZ00098 41 TTKILSDIE---LNENSKVLDIGSGLGGGCKYINEKY-GAHVHGVDICEKMVNIAKLRNSDKNKIEFEANDILKKDFPEN 116 (263)
T ss_pred HHHHHHhCC---CCCCCEEEEEcCCCChhhHHHHhhc-CCEEEEEECCHHHHHHHHHHcCcCCceEEEECCcccCCCCCC
Confidence 566777776 6677899999999999999998875 679999999 999887765 3579999999987 5653
Q ss_pred -ccEEEee
Q 034578 82 -ADAVFMK 88 (90)
Q Consensus 82 -~D~i~l~ 88 (90)
||+|+..
T Consensus 117 ~FD~V~s~ 124 (263)
T PTZ00098 117 TFDMIYSR 124 (263)
T ss_pred CeEEEEEh
Confidence 9999874
No 35
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.31 E-value=9.2e-12 Score=90.00 Aligned_cols=65 Identities=17% Similarity=0.390 Sum_probs=56.9
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCC--cccEEEee
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIP--NADAVFMK 88 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p--~~D~i~l~ 88 (90)
..+|||+|||+|.+++.+++++|+.+++++|+ |.+++.|+++ ++++++.+|+++.++ .+|+|+++
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~~~~~~~fDlIvsN 213 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFENIEKQKFDFIVSN 213 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhhhCcCCCccEEEEC
Confidence 36899999999999999999999999999999 9999988762 579999999988654 39999874
No 36
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.30 E-value=1.9e-11 Score=80.39 Aligned_cols=80 Identities=21% Similarity=0.405 Sum_probs=63.6
Q ss_pred hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC
Q 034578 5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD 77 (90)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~ 77 (90)
+..+.+.+++.++ ....+|||+|||+|.++..+++.+|..+++++|+ +.+++.+++ .++++++.+|+++
T Consensus 73 ~~~l~~~~l~~~~----~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~ 148 (251)
T TIGR03534 73 TEELVEAALERLK----KGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLDNVTFLQSDWFE 148 (251)
T ss_pred hHHHHHHHHHhcc----cCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhc
Confidence 3445555555554 2346899999999999999999999999999999 999988865 2479999999988
Q ss_pred CCC--cccEEEee
Q 034578 78 AIP--NADAVFMK 88 (90)
Q Consensus 78 ~~p--~~D~i~l~ 88 (90)
+++ .+|+|+++
T Consensus 149 ~~~~~~fD~Vi~n 161 (251)
T TIGR03534 149 PLPGGKFDLIVSN 161 (251)
T ss_pred cCcCCceeEEEEC
Confidence 654 39999863
No 37
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.30 E-value=1.5e-11 Score=79.19 Aligned_cols=76 Identities=14% Similarity=0.153 Sum_probs=59.8
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCC
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIP 80 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p 80 (90)
.+.+++.++ ..+..+|||+|||+|.++..++++ ..+++++|+ |.+++.+++ ..++++...|+.+ +++
T Consensus 19 ~~~l~~~l~---~~~~~~vLDiGcG~G~~a~~La~~--g~~V~gvD~S~~~i~~a~~~~~~~~~~~v~~~~~d~~~~~~~ 93 (197)
T PRK11207 19 HSEVLEAVK---VVKPGKTLDLGCGNGRNSLYLAAN--GFDVTAWDKNPMSIANLERIKAAENLDNLHTAVVDLNNLTFD 93 (197)
T ss_pred hHHHHHhcc---cCCCCcEEEECCCCCHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHHcCCCcceEEecChhhCCcC
Confidence 455666666 445689999999999999999986 568999999 999987764 1458888899876 455
Q ss_pred c-ccEEEeec
Q 034578 81 N-ADAVFMKV 89 (90)
Q Consensus 81 ~-~D~i~l~~ 89 (90)
. +|+|+++.
T Consensus 94 ~~fD~I~~~~ 103 (197)
T PRK11207 94 GEYDFILSTV 103 (197)
T ss_pred CCcCEEEEec
Confidence 4 99998764
No 38
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.29 E-value=2.1e-11 Score=87.14 Aligned_cols=77 Identities=21% Similarity=0.324 Sum_probs=62.4
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN 81 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~ 81 (90)
.+.+++.+. +.+..+|||||||+|.++..+++.+ +.+++++|+ +.+++.|++ ..+++|..+|+++ ++|.
T Consensus 255 te~l~~~~~---~~~~~~vLDiGcG~G~~~~~la~~~-~~~v~gvDiS~~~l~~A~~~~~~~~~~v~~~~~d~~~~~~~~ 330 (475)
T PLN02336 255 TKEFVDKLD---LKPGQKVLDVGCGIGGGDFYMAENF-DVHVVGIDLSVNMISFALERAIGRKCSVEFEVADCTKKTYPD 330 (475)
T ss_pred HHHHHHhcC---CCCCCEEEEEeccCCHHHHHHHHhc-CCEEEEEECCHHHHHHHHHHhhcCCCceEEEEcCcccCCCCC
Confidence 455666665 5566799999999999999999876 779999999 999988764 3579999999987 5553
Q ss_pred --ccEEEeec
Q 034578 82 --ADAVFMKV 89 (90)
Q Consensus 82 --~D~i~l~~ 89 (90)
+|+|+...
T Consensus 331 ~~fD~I~s~~ 340 (475)
T PLN02336 331 NSFDVIYSRD 340 (475)
T ss_pred CCEEEEEECC
Confidence 99999753
No 39
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.28 E-value=2.2e-11 Score=84.46 Aligned_cols=76 Identities=17% Similarity=0.271 Sum_probs=60.3
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCCCCc-c
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDAIPN-A 82 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~~p~-~ 82 (90)
+.+++.++ .....+|||+|||+|.++..+++++|+.+++++|+ +.+++.++++ -..+++.+|.++..++ +
T Consensus 186 ~lLl~~l~---~~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~~~~~~~D~~~~~~~~f 262 (342)
T PRK09489 186 QLLLSTLT---PHTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLEGEVFASNVFSDIKGRF 262 (342)
T ss_pred HHHHHhcc---ccCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCEEEEcccccccCCCc
Confidence 34455555 22346899999999999999999999999999999 8999888751 2457788898876554 9
Q ss_pred cEEEee
Q 034578 83 DAVFMK 88 (90)
Q Consensus 83 D~i~l~ 88 (90)
|+|+++
T Consensus 263 DlIvsN 268 (342)
T PRK09489 263 DMIISN 268 (342)
T ss_pred cEEEEC
Confidence 999975
No 40
>PRK08317 hypothetical protein; Provisional
Probab=99.28 E-value=3.5e-11 Score=77.94 Aligned_cols=81 Identities=22% Similarity=0.249 Sum_probs=64.7
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD- 77 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~- 77 (90)
....+.+++.++ +.+..+|||+|||+|.++..+++.+ |..+++++|+ |.+++.+++ ..++++..+|+.+
T Consensus 5 ~~~~~~~~~~~~---~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~~~~~~~~~~d~~~~ 81 (241)
T PRK08317 5 RRYRARTFELLA---VQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGLGPNVEFVRGDADGL 81 (241)
T ss_pred HHHHHHHHHHcC---CCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCCCCceEEEecccccC
Confidence 344455666666 6667899999999999999999998 7889999999 888877754 3679999999876
Q ss_pred CCC--cccEEEeec
Q 034578 78 AIP--NADAVFMKV 89 (90)
Q Consensus 78 ~~p--~~D~i~l~~ 89 (90)
+++ .+|+|++.+
T Consensus 82 ~~~~~~~D~v~~~~ 95 (241)
T PRK08317 82 PFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCCCceEEEEec
Confidence 444 389999865
No 41
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.28 E-value=4.5e-11 Score=77.43 Aligned_cols=78 Identities=15% Similarity=0.149 Sum_probs=60.8
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCC
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAI 79 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~ 79 (90)
...+++.+. ..+..+|||+|||+|.++..+++..+ ..+++++|+ |.+++.++++ .+++++.+|+.+.+
T Consensus 61 ~~~~~~~l~---~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~ 137 (205)
T PRK13944 61 VAMMCELIE---PRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGL 137 (205)
T ss_pred HHHHHHhcC---CCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCC
Confidence 444555555 45568999999999999999998864 678999999 9998877651 46899999998744
Q ss_pred C---cccEEEeec
Q 034578 80 P---NADAVFMKV 89 (90)
Q Consensus 80 p---~~D~i~l~~ 89 (90)
+ .||+|++..
T Consensus 138 ~~~~~fD~Ii~~~ 150 (205)
T PRK13944 138 EKHAPFDAIIVTA 150 (205)
T ss_pred ccCCCccEEEEcc
Confidence 3 399998753
No 42
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.27 E-value=4.2e-11 Score=77.90 Aligned_cols=78 Identities=12% Similarity=0.170 Sum_probs=62.9
Q ss_pred hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCC
Q 034578 8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAI 79 (90)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~ 79 (90)
....+++.++ ..+..+|||+|||+|.++..+++..+ ..+++++|+ |.+++.|+++ ++++++.+|..+.+
T Consensus 65 ~~~~~~~~l~---~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~v~~~~~d~~~~~ 141 (215)
T TIGR00080 65 MVAMMTELLE---LKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDNVIVIVGDGTQGW 141 (215)
T ss_pred HHHHHHHHhC---CCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCeEEEECCcccCC
Confidence 3456666666 56778999999999999999999865 578999999 9999888752 57999999998743
Q ss_pred C---cccEEEee
Q 034578 80 P---NADAVFMK 88 (90)
Q Consensus 80 p---~~D~i~l~ 88 (90)
+ .||+|++.
T Consensus 142 ~~~~~fD~Ii~~ 153 (215)
T TIGR00080 142 EPLAPYDRIYVT 153 (215)
T ss_pred cccCCCCEEEEc
Confidence 2 39999875
No 43
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.27 E-value=1.1e-12 Score=75.54 Aligned_cols=63 Identities=24% Similarity=0.405 Sum_probs=42.1
Q ss_pred EEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------C---CeeEEEecCCCCC-C-cccEEEeecC
Q 034578 28 VDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------E---GVSHVGGDMFDAI-P-NADAVFMKVA 90 (90)
Q Consensus 28 lDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~---rv~~~~~d~~~~~-p-~~D~i~l~~v 90 (90)
||||||+|.++..+++++|..+++++|+ |.+++.++++ . ++++...+.++.. + .||+|++.++
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~v 75 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNV 75 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-T
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhh
Confidence 7999999999999999999999999999 9999888772 2 3444444444433 3 4999998865
No 44
>PRK05785 hypothetical protein; Provisional
Probab=99.27 E-value=2.8e-11 Score=79.55 Aligned_cols=64 Identities=16% Similarity=0.288 Sum_probs=53.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCc--ccEEEeec
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPN--ADAVFMKV 89 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~i~l~~ 89 (90)
...+|||||||||.++..+++.+ +.+++++|+ ++|++.+++.. .++.+|+.+ ++++ +|+|+++.
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~-~~~v~gvD~S~~Ml~~a~~~~--~~~~~d~~~lp~~d~sfD~v~~~~ 118 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVF-KYYVVALDYAENMLKMNLVAD--DKVVGSFEALPFRDKSFDVVMSSF 118 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhc-CCEEEEECCCHHHHHHHHhcc--ceEEechhhCCCCCCCEEEEEecC
Confidence 35799999999999999999987 579999999 99999988643 467888877 6654 99999764
No 45
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.26 E-value=8.6e-12 Score=82.99 Aligned_cols=68 Identities=13% Similarity=0.261 Sum_probs=58.9
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---CC--cccEEEe
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---IP--NADAVFM 87 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~p--~~D~i~l 87 (90)
.....+|||+|||+|.++..++++.+.++++++|+ +.+.+.|++ .+|++++.+|+.+. .+ .||+|++
T Consensus 42 ~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~ 121 (248)
T COG4123 42 VPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIIC 121 (248)
T ss_pred cccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEe
Confidence 44578999999999999999999999999999999 999998876 38999999999772 22 2899998
Q ss_pred e
Q 034578 88 K 88 (90)
Q Consensus 88 ~ 88 (90)
+
T Consensus 122 N 122 (248)
T COG4123 122 N 122 (248)
T ss_pred C
Confidence 6
No 46
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.26 E-value=2.6e-11 Score=82.01 Aligned_cols=80 Identities=15% Similarity=0.204 Sum_probs=65.6
Q ss_pred chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecC
Q 034578 4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDM 75 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~ 75 (90)
-|....+.+++.+. +++..+|||||||.|.+++.+++++ +++++++++ ++..+.+++ ..++++...|+
T Consensus 56 AQ~~k~~~~~~kl~---L~~G~~lLDiGCGWG~l~~~aA~~y-~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~ 131 (283)
T COG2230 56 AQRAKLDLILEKLG---LKPGMTLLDIGCGWGGLAIYAAEEY-GVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDY 131 (283)
T ss_pred HHHHHHHHHHHhcC---CCCCCEEEEeCCChhHHHHHHHHHc-CCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccc
Confidence 45556677888888 8889999999999999999999999 999999999 887777665 25899999998
Q ss_pred CCCCCcccEEEe
Q 034578 76 FDAIPNADAVFM 87 (90)
Q Consensus 76 ~~~~p~~D~i~l 87 (90)
.+..+.+|-|+.
T Consensus 132 rd~~e~fDrIvS 143 (283)
T COG2230 132 RDFEEPFDRIVS 143 (283)
T ss_pred cccccccceeee
Confidence 763334887763
No 47
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.26 E-value=3.8e-11 Score=80.57 Aligned_cols=66 Identities=17% Similarity=0.305 Sum_probs=55.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC---CeEEEeeh-HHHHHhCCC-CCCeeEEEecCCC-CCCc--ccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPH---IKGINFDL-QHVIATAPT-HEGVSHVGGDMFD-AIPN--ADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~---~~~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~-~~p~--~D~i~l~ 88 (90)
+..+|||+|||+|.++..+++..|. .+++++|+ +.+++.|++ .+++++..+|..+ +++. +|+|+..
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~~~~~~~~~d~~~lp~~~~sfD~I~~~ 158 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRYPQVTFCVASSHRLPFADQSLDAIIRI 158 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhCCCCeEEEeecccCCCcCCceeEEEEe
Confidence 4578999999999999999998875 37899999 999998876 4779999999887 6553 9999853
No 48
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.26 E-value=6.8e-11 Score=77.01 Aligned_cols=79 Identities=13% Similarity=0.166 Sum_probs=63.1
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCC
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDA 78 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~ 78 (90)
.....+++.++ +.+..+|||+|||+|.++..+++.. +..+++++|+ |.+++.+++ .++++++.+|..+.
T Consensus 63 ~~~~~~~~~l~---~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~v~~~~gd~~~~ 139 (212)
T PRK13942 63 HMVAIMCELLD---LKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDNVEVIVGDGTLG 139 (212)
T ss_pred HHHHHHHHHcC---CCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCeEEEECCcccC
Confidence 34455666666 6677899999999999999999885 4579999999 999988875 25799999998874
Q ss_pred CC---cccEEEee
Q 034578 79 IP---NADAVFMK 88 (90)
Q Consensus 79 ~p---~~D~i~l~ 88 (90)
++ .||+|++.
T Consensus 140 ~~~~~~fD~I~~~ 152 (212)
T PRK13942 140 YEENAPYDRIYVT 152 (212)
T ss_pred CCcCCCcCEEEEC
Confidence 32 39999875
No 49
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.25 E-value=2.9e-11 Score=68.16 Aligned_cols=61 Identities=33% Similarity=0.515 Sum_probs=51.6
Q ss_pred EEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC---CCCeeEEEecCCC-CCCc--ccEEEeec
Q 034578 28 VDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT---HEGVSHVGGDMFD-AIPN--ADAVFMKV 89 (90)
Q Consensus 28 lDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---~~rv~~~~~d~~~-~~p~--~D~i~l~~ 89 (90)
||+|||+|..+..++++ +..+++++|. +.+++.+++ ..++++..+|+.+ ++|+ +|+|++.+
T Consensus 1 LdiG~G~G~~~~~l~~~-~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~sfD~v~~~~ 68 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKR-GGASVTGIDISEEMLEQARKRLKNEGVSFRQGDAEDLPFPDNSFDVVFSNS 68 (95)
T ss_dssp EEET-TTSHHHHHHHHT-TTCEEEEEES-HHHHHHHHHHTTTSTEEEEESBTTSSSS-TT-EEEEEEES
T ss_pred CEecCcCCHHHHHHHhc-cCCEEEEEeCCHHHHHHHHhcccccCchheeehHHhCcccccccccccccc
Confidence 79999999999999998 8999999999 888988876 3567799999988 6664 99999865
No 50
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.25 E-value=4.8e-11 Score=75.03 Aligned_cols=75 Identities=12% Similarity=0.314 Sum_probs=60.4
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CCCc-
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AIPN- 81 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~p~- 81 (90)
++.+++.++ +.+..++||+|||+|.++..++++ ..+++++|+ +.+++.+++ .++++++.+|+.+ +++.
T Consensus 2 ~~~i~~~~~---~~~~~~vLEiG~G~G~lt~~l~~~--~~~v~~vE~~~~~~~~~~~~~~~~~~v~ii~~D~~~~~~~~~ 76 (169)
T smart00650 2 IDKIVRAAN---LRPGDTVLEIGPGKGALTEELLER--AARVTAIEIDPRLAPRLREKFAAADNLTVIHGDALKFDLPKL 76 (169)
T ss_pred HHHHHHhcC---CCCcCEEEEECCCccHHHHHHHhc--CCeEEEEECCHHHHHHHHHHhccCCCEEEEECchhcCCcccc
Confidence 456777776 556679999999999999999998 578999999 888887765 3589999999988 4553
Q ss_pred -ccEEEee
Q 034578 82 -ADAVFMK 88 (90)
Q Consensus 82 -~D~i~l~ 88 (90)
+|.|+.+
T Consensus 77 ~~d~vi~n 84 (169)
T smart00650 77 QPYKVVGN 84 (169)
T ss_pred CCCEEEEC
Confidence 7887653
No 51
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.24 E-value=1e-11 Score=71.98 Aligned_cols=62 Identities=26% Similarity=0.420 Sum_probs=49.6
Q ss_pred EEEecCCchHHHHHHHHHC---CCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CC--CcccEEEee
Q 034578 27 MVDVGGGTGTVLAEIVKSY---PHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AI--PNADAVFMK 88 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~--p~~D~i~l~ 88 (90)
|||+|||+|..+..+++.+ |..+++++|+ +.+++.+++ ..+++++.+|+.+ +. ..+|+|+++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~~~~~~~~D~~~l~~~~~~~D~v~~~ 74 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGPKVRFVQADARDLPFSDGKFDLVVCS 74 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTTTSEEEESCTTCHHHHSSSEEEEEE-
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCCceEEEECCHhHCcccCCCeeEEEEc
Confidence 7999999999999999997 5689999999 999998875 2489999999987 32 249999984
No 52
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=99.22 E-value=8e-11 Score=78.66 Aligned_cols=78 Identities=17% Similarity=0.262 Sum_probs=63.5
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CC
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AI 79 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~ 79 (90)
..+++.+++..+ ..+..+|||+|||+|.++..++++. .+++++|+ +.+++.+++ .++++++.+|+.+ ++
T Consensus 15 ~~~~~~iv~~~~---~~~~~~VLEIG~G~G~lt~~L~~~~--~~v~~vEid~~~~~~l~~~~~~~~~v~ii~~D~~~~~~ 89 (258)
T PRK14896 15 DRVVDRIVEYAE---DTDGDPVLEIGPGKGALTDELAKRA--KKVYAIELDPRLAEFLRDDEIAAGNVEIIEGDALKVDL 89 (258)
T ss_pred HHHHHHHHHhcC---CCCcCeEEEEeCccCHHHHHHHHhC--CEEEEEECCHHHHHHHHHHhccCCCEEEEEeccccCCc
Confidence 455677777776 5567899999999999999999983 57999999 888887765 3689999999988 66
Q ss_pred CcccEEEee
Q 034578 80 PNADAVFMK 88 (90)
Q Consensus 80 p~~D~i~l~ 88 (90)
+.+|.|+.+
T Consensus 90 ~~~d~Vv~N 98 (258)
T PRK14896 90 PEFNKVVSN 98 (258)
T ss_pred hhceEEEEc
Confidence 668877654
No 53
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.22 E-value=3.3e-11 Score=78.37 Aligned_cols=64 Identities=19% Similarity=0.327 Sum_probs=54.6
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCc-ccEEEee
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPN-ADAVFMK 88 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~-~D~i~l~ 88 (90)
.+|||+|||+|.++..+++.+|+.+++++|+ |.+++.+++ .++++++.+|+.+ +.+. +|+|+..
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~ 74 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGF 74 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehH
Confidence 3799999999999999999999999999999 888887764 3678999999976 4554 9999864
No 54
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=99.22 E-value=5.6e-11 Score=79.98 Aligned_cols=76 Identities=11% Similarity=0.226 Sum_probs=60.4
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---CCeeEEEecCCC-CCC
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---EGVSHVGGDMFD-AIP 80 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~d~~~-~~p 80 (90)
..+++.+++.++ ..+..+|||+|||+|.++..++++.+ +++++|+ +.+++.++++ ++++++.+|+.+ +++
T Consensus 28 ~~i~~~i~~~l~---~~~~~~VLEiG~G~G~lt~~L~~~~~--~v~avE~d~~~~~~~~~~~~~~~v~~i~~D~~~~~~~ 102 (272)
T PRK00274 28 ENILDKIVDAAG---PQPGDNVLEIGPGLGALTEPLLERAA--KVTAVEIDRDLAPILAETFAEDNLTIIEGDALKVDLS 102 (272)
T ss_pred HHHHHHHHHhcC---CCCcCeEEEeCCCccHHHHHHHHhCC--cEEEEECCHHHHHHHHHhhccCceEEEEChhhcCCHH
Confidence 345677777776 55678999999999999999999976 7899999 9999988653 689999999987 444
Q ss_pred cc--cEEE
Q 034578 81 NA--DAVF 86 (90)
Q Consensus 81 ~~--D~i~ 86 (90)
.. |.++
T Consensus 103 ~~~~~~vv 110 (272)
T PRK00274 103 ELQPLKVV 110 (272)
T ss_pred HcCcceEE
Confidence 43 4444
No 55
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.22 E-value=7.3e-11 Score=81.79 Aligned_cols=80 Identities=26% Similarity=0.279 Sum_probs=62.8
Q ss_pred hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---CCeeEEEecCCC-CCCc-
Q 034578 8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---EGVSHVGGDMFD-AIPN- 81 (90)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~d~~~-~~p~- 81 (90)
..+.+++.... ..+..+|||||||+|.++..+++..+..+++++|. +.+++.++++ .+++++.+|+.+ +++.
T Consensus 100 ~r~~~l~~~~l--~~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~~i~~i~gD~e~lp~~~~ 177 (340)
T PLN02490 100 MRDDALEPADL--SDRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLKECKIIEGDAEDLPFPTD 177 (340)
T ss_pred HHHHHHhhccc--CCCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhccCCeEEeccHHhCCCCCC
Confidence 34445555541 23457999999999999999999998899999999 9999888763 578999999977 5543
Q ss_pred -ccEEEeec
Q 034578 82 -ADAVFMKV 89 (90)
Q Consensus 82 -~D~i~l~~ 89 (90)
+|+|++..
T Consensus 178 sFDvVIs~~ 186 (340)
T PLN02490 178 YADRYVSAG 186 (340)
T ss_pred ceeEEEEcC
Confidence 99998754
No 56
>PRK06202 hypothetical protein; Provisional
Probab=99.21 E-value=1.1e-10 Score=76.54 Aligned_cols=68 Identities=16% Similarity=0.194 Sum_probs=51.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHH----CCCCeEEEeeh-HHHHHhCCCC---CCeeEEEecCCC-CC-C-cccEEEeec
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKS----YPHIKGINFDL-QHVIATAPTH---EGVSHVGGDMFD-AI-P-NADAVFMKV 89 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~d~~~-~~-p-~~D~i~l~~ 89 (90)
.+..+|||+|||+|.++..+++. .|+.+++++|+ |.+++.+++. .++++...+... +. + .+|+|+++.
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~l~~~~~~fD~V~~~~ 137 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPGVTFRQAVSDELVAEGERFDVVTSNH 137 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCCCeEEEEecccccccCCCccEEEECC
Confidence 35679999999999999888764 46679999999 9999988763 456666655433 22 3 399999875
No 57
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.21 E-value=7e-11 Score=76.01 Aligned_cols=76 Identities=18% Similarity=0.111 Sum_probs=57.6
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN 81 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~ 81 (90)
.+.+++.++ ..+..+|||+|||+|.++..++++ ..+++++|+ |.+++.+++ +-++++...|+.. ++++
T Consensus 19 ~~~l~~~~~---~~~~~~vLDiGcG~G~~a~~la~~--g~~V~~iD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~ 93 (195)
T TIGR00477 19 HSAVREAVK---TVAPCKTLDLGCGQGRNSLYLSLA--GYDVRAWDHNPASIASVLDMKARENLPLRTDAYDINAAALNE 93 (195)
T ss_pred hHHHHHHhc---cCCCCcEEEeCCCCCHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHHHhCCCceeEeccchhccccC
Confidence 456666666 445689999999999999999986 578999999 999987654 2246777778755 4444
Q ss_pred -ccEEEeec
Q 034578 82 -ADAVFMKV 89 (90)
Q Consensus 82 -~D~i~l~~ 89 (90)
+|+|+++.
T Consensus 94 ~fD~I~~~~ 102 (195)
T TIGR00477 94 DYDFIFSTV 102 (195)
T ss_pred CCCEEEEec
Confidence 99998753
No 58
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.21 E-value=1.6e-10 Score=75.19 Aligned_cols=77 Identities=19% Similarity=0.288 Sum_probs=60.4
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CC
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AI 79 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~ 79 (90)
..+++.+. ..+..+|||+|||+|.++..+++.+| ..+++++|+ +.+++.+++ ..+++++.+|+.+ +.
T Consensus 41 ~~~~~~~~---~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~ 117 (239)
T PRK00216 41 RKTIKWLG---VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPF 117 (239)
T ss_pred HHHHHHhC---CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCC
Confidence 34445444 33457999999999999999999998 789999999 888887765 2568999999987 33
Q ss_pred C--cccEEEeec
Q 034578 80 P--NADAVFMKV 89 (90)
Q Consensus 80 p--~~D~i~l~~ 89 (90)
+ .+|+|++++
T Consensus 118 ~~~~~D~I~~~~ 129 (239)
T PRK00216 118 PDNSFDAVTIAF 129 (239)
T ss_pred CCCCccEEEEec
Confidence 3 389998764
No 59
>PRK04457 spermidine synthase; Provisional
Probab=99.20 E-value=6.8e-11 Score=79.33 Aligned_cols=67 Identities=18% Similarity=0.305 Sum_probs=57.4
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC---CCCc-ccEEEee
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD---AIPN-ADAVFMK 88 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~---~~p~-~D~i~l~ 88 (90)
+++.+|||||||+|.++..+++.+|..+++++|+ |.+++.|++ .+|++++.+|..+ ..+. ||+|++.
T Consensus 65 ~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D 143 (262)
T PRK04457 65 PRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVD 143 (262)
T ss_pred CCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEe
Confidence 3568999999999999999999999999999999 999998865 2689999999865 2343 9999864
No 60
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.20 E-value=1.1e-10 Score=78.41 Aligned_cols=68 Identities=18% Similarity=0.302 Sum_probs=54.6
Q ss_pred CCCeEEEecCCchH----HHHHHHHHCC-----CCeEEEeeh-HHHHHhCCCC---------------------------
Q 034578 23 NIRSMVDVGGGTGT----VLAEIVKSYP-----HIKGINFDL-QHVIATAPTH--------------------------- 65 (90)
Q Consensus 23 ~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-p~~~~~a~~~--------------------------- 65 (90)
+..+|+|+|||||. ++..+++..| +.++++.|+ +.|++.|++.
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~ 178 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYR 178 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEE
Confidence 45799999999996 5666777655 578999999 9999988762
Q ss_pred ------CCeeEEEecCCCC-CC--cccEEEeecC
Q 034578 66 ------EGVSHVGGDMFDA-IP--NADAVFMKVA 90 (90)
Q Consensus 66 ------~rv~~~~~d~~~~-~p--~~D~i~l~~v 90 (90)
.+++|..+|+.+. .| .+|+|+++++
T Consensus 179 v~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnv 212 (264)
T smart00138 179 VKPELKERVRFAKHNLLAESPPLGDFDLIFCRNV 212 (264)
T ss_pred EChHHhCcCEEeeccCCCCCCccCCCCEEEechh
Confidence 3689999999983 33 2999999764
No 61
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.19 E-value=5.5e-11 Score=79.06 Aligned_cols=65 Identities=18% Similarity=0.287 Sum_probs=53.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC--CC-Cc-ccEEEeec
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD--AI-PN-ADAVFMKV 89 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~--~~-p~-~D~i~l~~ 89 (90)
+..+|||+|||+|.++..+++. ..+++++|+ |.+++.|++ .++++++.+|+.+ +. +. +|+|++..
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~--g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~fD~V~~~~ 120 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAEL--GHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPVDLILFHA 120 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCCCEEEehh
Confidence 4579999999999999999987 468999999 999998875 2578999999865 23 33 99999865
No 62
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.19 E-value=1.4e-10 Score=74.41 Aligned_cols=76 Identities=20% Similarity=0.307 Sum_probs=59.1
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC---C
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD---A 78 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~---~ 78 (90)
...+++.++ ..+..+|||+|||+|.++..+++..|..+++++|+ |.+++.++++ ++++++.+|..+ .
T Consensus 29 ~~~l~~~l~---~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~v~~~~~d~~~~~~~ 105 (196)
T PRK07402 29 RLLLISQLR---LEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKNVEVIEGSAPECLAQ 105 (196)
T ss_pred HHHHHHhcC---CCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCeEEEECchHHHHhh
Confidence 334566665 55678999999999999999999899999999999 9999887652 579999998865 2
Q ss_pred CC-cccEEEe
Q 034578 79 IP-NADAVFM 87 (90)
Q Consensus 79 ~p-~~D~i~l 87 (90)
+. .+|.+++
T Consensus 106 ~~~~~d~v~~ 115 (196)
T PRK07402 106 LAPAPDRVCI 115 (196)
T ss_pred CCCCCCEEEE
Confidence 32 3566654
No 63
>PRK06922 hypothetical protein; Provisional
Probab=99.19 E-value=8.7e-11 Score=86.75 Aligned_cols=69 Identities=22% Similarity=0.361 Sum_probs=57.2
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-C--CC-c-ccEEEeec
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-A--IP-N-ADAVFMKV 89 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~--~p-~-~D~i~l~~ 89 (90)
+.+..+|||+|||+|.++..+++.+|+.+++++|+ +.|++.+++ ..+++++.+|..+ + ++ . +|+|+++.
T Consensus 416 ~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~~ie~I~gDa~dLp~~fedeSFDvVVsn~ 495 (677)
T PRK06922 416 YIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGRSWNVIKGDAINLSSSFEKESVDTIVYSS 495 (677)
T ss_pred hcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCCeEEEEcchHhCccccCCCCEEEEEEch
Confidence 34568999999999999999999999999999999 899988765 2467888899876 3 43 3 89999764
No 64
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.18 E-value=1.1e-10 Score=73.84 Aligned_cols=64 Identities=17% Similarity=0.321 Sum_probs=53.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCCCC-cccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDAIP-NADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~~p-~~D~i~l~ 88 (90)
+..+|||+|||+|.++..+++..+ +++++|+ |.+++.++++ .+++++.+|+++..+ .+|+|+++
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~--~v~~vD~s~~~~~~a~~~~~~~~~~~~~~~~d~~~~~~~~fD~Vi~n 89 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGK--CILTTDINPFAVKELRENAKLNNVGLDVVMTDLFKGVRGKFDVILFN 89 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCC--EEEEEECCHHHHHHHHHHHHHcCCceEEEEcccccccCCcccEEEEC
Confidence 357899999999999999999876 8999999 9999887752 468889999987444 49999875
No 65
>PLN02672 methionine S-methyltransferase
Probab=99.17 E-value=1.2e-10 Score=89.81 Aligned_cols=83 Identities=12% Similarity=0.145 Sum_probs=63.5
Q ss_pred chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----------------
Q 034578 4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----------------- 65 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------------- 65 (90)
.++.+++. ++..+.. .-+..+|+|+|||+|.+++.+++++|..+++++|+ |.+++.|+++
T Consensus 101 eTE~lve~-L~~~~~~-~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~~~~~~ 178 (1082)
T PLN02672 101 WSFTFYEG-LNRHPDS-IFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLPVYDGE 178 (1082)
T ss_pred hHHHHHHH-HHhcccc-cCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCcccccccccccc
Confidence 45566666 4433310 11246899999999999999999999999999999 9999887431
Q ss_pred -----CCeeEEEecCCCCCC----cccEEEee
Q 034578 66 -----EGVSHVGGDMFDAIP----NADAVFMK 88 (90)
Q Consensus 66 -----~rv~~~~~d~~~~~p----~~D~i~l~ 88 (90)
+|++|+.+|+++.++ .+|+|+.+
T Consensus 179 ~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSN 210 (1082)
T PLN02672 179 GKTLLDRVEFYESDLLGYCRDNNIELDRIVGC 210 (1082)
T ss_pred cccccccEEEEECchhhhccccCCceEEEEEC
Confidence 379999999998553 38998864
No 66
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.16 E-value=6.5e-11 Score=76.12 Aligned_cols=66 Identities=24% Similarity=0.466 Sum_probs=53.4
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC---CCc--ccEEEeec
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA---IPN--ADAVFMKV 89 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~---~p~--~D~i~l~~ 89 (90)
++..+|||+|||.|.++..|.+. .++++.++|+ ++-+..+.++ -++++++|+.+. +|+ ||.|+|++
T Consensus 12 ~pgsrVLDLGCGdG~LL~~L~~~-k~v~g~GvEid~~~v~~cv~r-Gv~Viq~Dld~gL~~f~d~sFD~VIlsq 83 (193)
T PF07021_consen 12 EPGSRVLDLGCGDGELLAYLKDE-KQVDGYGVEIDPDNVAACVAR-GVSVIQGDLDEGLADFPDQSFDYVILSQ 83 (193)
T ss_pred CCCCEEEecCCCchHHHHHHHHh-cCCeEEEEecCHHHHHHHHHc-CCCEEECCHHHhHhhCCCCCccEEehHh
Confidence 46789999999999999888885 6999999999 7766655443 377899999873 554 89999985
No 67
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.15 E-value=2.3e-10 Score=74.41 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=53.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCCcccEEEeec
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIPNADAVFMKV 89 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~i~l~~ 89 (90)
+..++||+|||+|.++..+++. ..+++++|+ |.+++.++++ .++++..+|+.+....+|+|++..
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~--~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~ii~~~ 127 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKR--GAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLCGEFDIVVCMD 127 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCCCCcCEEEEhh
Confidence 4689999999999999999886 458999999 9999888651 479999999876334599998753
No 68
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.15 E-value=8.6e-11 Score=75.48 Aligned_cols=66 Identities=18% Similarity=0.411 Sum_probs=55.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-C---CCc--ccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-A---IPN--ADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~---~p~--~D~i~l~ 88 (90)
...++||||||+|.++..+++++|+.+++++|+ +.+++.+++ ..+++++.+|+.+ . ++. +|.++++
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~ni~~i~~d~~~~~~~~~~~~~~d~v~~~ 94 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKNLHVLCGDANELLDKFFPDGSLSKVFLN 94 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCCEEEEccCHHHHHHhhCCCCceeEEEEE
Confidence 456899999999999999999999999999999 888887754 2589999999865 1 332 7888875
No 69
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.15 E-value=9.1e-11 Score=75.88 Aligned_cols=66 Identities=21% Similarity=0.384 Sum_probs=55.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecC-CC-C--CC-c-ccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDM-FD-A--IP-N-ADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~-~~-~--~p-~-~D~i~l~ 88 (90)
...+|||+|||+|.++..+++.+|+.+++++|+ |.+++.+++ ..+++++.+|+ .. + ++ . +|+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 357899999999999999999999999999999 999988764 26799999998 32 2 43 2 8999874
No 70
>PHA03411 putative methyltransferase; Provisional
Probab=99.14 E-value=1.5e-10 Score=78.10 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=56.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCCCC-Cc-ccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFDAI-PN-ADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~~~-p~-~D~i~l~ 88 (90)
...+|||+|||+|.++..++++.+..+++++|+ |.+++.++++ ++++++.+|+++.. +. +|+|+.+
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~~~v~~v~~D~~e~~~~~kFDlIIsN 133 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLLPEAEWITSDVFEFESNEKFDVVISN 133 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhCcCCEEEECchhhhcccCCCcEEEEc
Confidence 357899999999999999999888889999999 9999988774 67999999998843 33 9999874
No 71
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.14 E-value=9.8e-11 Score=68.95 Aligned_cols=63 Identities=22% Similarity=0.373 Sum_probs=53.6
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-C--CC--cccEEEee
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-A--IP--NADAVFMK 88 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~--~p--~~D~i~l~ 88 (90)
.+|||+|||+|.++..+++.. ..+++++|+ |.+++.+++ .+|++++.+|+++ . ++ .+|+|+++
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~-~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~n 77 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRG-AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTN 77 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHC-TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE-
T ss_pred CEEEEcCcchHHHHHHHHHHC-CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEEC
Confidence 479999999999999999998 899999999 999888765 3689999999987 2 43 39999975
No 72
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.13 E-value=1.5e-10 Score=78.10 Aligned_cols=79 Identities=14% Similarity=0.126 Sum_probs=55.6
Q ss_pred hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCC
Q 034578 5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMF 76 (90)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~ 76 (90)
+....+.+++.++ +.+..+|||||||.|.++..+++++ +++++++.+ ++-.+.+++ .+++++...|+.
T Consensus 47 Q~~k~~~~~~~~~---l~~G~~vLDiGcGwG~~~~~~a~~~-g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~ 122 (273)
T PF02353_consen 47 QERKLDLLCEKLG---LKPGDRVLDIGCGWGGLAIYAAERY-GCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYR 122 (273)
T ss_dssp HHHHHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH---EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GG
T ss_pred HHHHHHHHHHHhC---CCCCCEEEEeCCCccHHHHHHHHHc-CcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecc
Confidence 4455677788887 7788999999999999999999998 799999998 776665543 368999999987
Q ss_pred CCCCcccEEEe
Q 034578 77 DAIPNADAVFM 87 (90)
Q Consensus 77 ~~~p~~D~i~l 87 (90)
+--+.||.|+.
T Consensus 123 ~~~~~fD~IvS 133 (273)
T PF02353_consen 123 DLPGKFDRIVS 133 (273)
T ss_dssp G---S-SEEEE
T ss_pred ccCCCCCEEEE
Confidence 62235998874
No 73
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.12 E-value=3.2e-10 Score=78.02 Aligned_cols=75 Identities=16% Similarity=0.150 Sum_probs=55.6
Q ss_pred HHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC-------CCCCeeEEEecCCC-CCCc
Q 034578 11 AFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP-------THEGVSHVGGDMFD-AIPN 81 (90)
Q Consensus 11 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~-------~~~rv~~~~~d~~~-~~p~ 81 (90)
.++..++ .....+|||||||+|.++..+++..+. +++++|. +.++.+++ ...+++++.+|+.+ +.+.
T Consensus 113 ~l~~~l~---~l~g~~VLDIGCG~G~~~~~la~~g~~-~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~ 188 (322)
T PRK15068 113 RVLPHLS---PLKGRTVLDVGCGNGYHMWRMLGAGAK-LVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALK 188 (322)
T ss_pred HHHHhhC---CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcC
Confidence 3444554 234579999999999999999998765 5999998 76665432 13579999999876 4444
Q ss_pred -ccEEEeec
Q 034578 82 -ADAVFMKV 89 (90)
Q Consensus 82 -~D~i~l~~ 89 (90)
||+|++..
T Consensus 189 ~FD~V~s~~ 197 (322)
T PRK15068 189 AFDTVFSMG 197 (322)
T ss_pred CcCEEEECC
Confidence 99998753
No 74
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.12 E-value=1.7e-10 Score=74.53 Aligned_cols=72 Identities=15% Similarity=0.232 Sum_probs=55.4
Q ss_pred hhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCCCCCc--ccEEE
Q 034578 14 SHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFDAIPN--ADAVF 86 (90)
Q Consensus 14 ~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~~~p~--~D~i~ 86 (90)
..++ -....+++|+|||.|.++..|+.++ -+++++|+ |.+++.|++ .+++++...|+.+..|. ||+|+
T Consensus 37 aaLp---~~ry~~alEvGCs~G~lT~~LA~rC--d~LlavDis~~Al~~Ar~Rl~~~~~V~~~~~dvp~~~P~~~FDLIV 111 (201)
T PF05401_consen 37 AALP---RRRYRRALEVGCSIGVLTERLAPRC--DRLLAVDISPRALARARERLAGLPHVEWIQADVPEFWPEGRFDLIV 111 (201)
T ss_dssp HHHT---TSSEEEEEEE--TTSHHHHHHGGGE--EEEEEEES-HHHHHHHHHHTTT-SSEEEEES-TTT---SS-EEEEE
T ss_pred HhcC---ccccceeEecCCCccHHHHHHHHhh--CceEEEeCCHHHHHHHHHhcCCCCCeEEEECcCCCCCCCCCeeEEE
Confidence 3566 4567899999999999999999996 46899999 999999875 48899999999886554 99999
Q ss_pred eecC
Q 034578 87 MKVA 90 (90)
Q Consensus 87 l~~v 90 (90)
++-|
T Consensus 112 ~SEV 115 (201)
T PF05401_consen 112 LSEV 115 (201)
T ss_dssp EES-
T ss_pred EehH
Confidence 9854
No 75
>PHA03412 putative methyltransferase; Provisional
Probab=99.12 E-value=2.5e-10 Score=75.67 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=56.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHC---CCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCC-CCC-cccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSY---PHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFD-AIP-NADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~-~~p-~~D~i~l~ 88 (90)
...+|||+|||+|.++..++++. +..+++++|+ +.+++.|+++ .++.++.+|+.. .+. .+|+|+.+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~~~~~~~~D~~~~~~~~~FDlIIsN 121 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVPEATWINADALTTEFDTLFDMAISN 121 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhccCCEEEEcchhcccccCCccEEEEC
Confidence 35799999999999999999875 4678999999 9999999875 679999999986 344 39999875
No 76
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=99.12 E-value=3.4e-10 Score=75.31 Aligned_cols=79 Identities=11% Similarity=0.224 Sum_probs=61.3
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CC
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AI 79 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~ 79 (90)
..+.+.+++..+ ..+..+|||+|||+|.++..++++.+. ++++|. +.+++.+++ .++++++.+|+.+ ++
T Consensus 15 ~~i~~~i~~~~~---~~~~~~VLEiG~G~G~lt~~L~~~~~~--v~~iE~d~~~~~~l~~~~~~~~~v~v~~~D~~~~~~ 89 (253)
T TIGR00755 15 ESVIQKIVEAAN---VLEGDVVLEIGPGLGALTEPLLKRAKK--VTAIEIDPRLAEILRKLLSLYERLEVIEGDALKVDL 89 (253)
T ss_pred HHHHHHHHHhcC---CCCcCEEEEeCCCCCHHHHHHHHhCCc--EEEEECCHHHHHHHHHHhCcCCcEEEEECchhcCCh
Confidence 345677777776 566789999999999999999999864 888998 888887764 3689999999988 45
Q ss_pred Cccc--EEEeec
Q 034578 80 PNAD--AVFMKV 89 (90)
Q Consensus 80 p~~D--~i~l~~ 89 (90)
+.+| .+++++
T Consensus 90 ~~~d~~~~vvsN 101 (253)
T TIGR00755 90 PDFPKQLKVVSN 101 (253)
T ss_pred hHcCCcceEEEc
Confidence 5455 344444
No 77
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.11 E-value=6.6e-10 Score=71.59 Aligned_cols=77 Identities=22% Similarity=0.255 Sum_probs=60.8
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CCC--
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AIP-- 80 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~p-- 80 (90)
..+++.+. ..+..+|||+|||+|.++..+++..|. .+++++|+ |.+++.+++ ..+++++.+|+.+ +.+
T Consensus 29 ~~~~~~~~---~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 105 (223)
T TIGR01934 29 RRAVKLIG---VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSELPLNIEFIQADAEALPFEDN 105 (223)
T ss_pred HHHHHHhc---cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhccCCCceEEecchhcCCCCCC
Confidence 34455554 345689999999999999999999987 79999999 888877765 2578999999987 443
Q ss_pred cccEEEeec
Q 034578 81 NADAVFMKV 89 (90)
Q Consensus 81 ~~D~i~l~~ 89 (90)
.+|+|+++.
T Consensus 106 ~~D~i~~~~ 114 (223)
T TIGR01934 106 SFDAVTIAF 114 (223)
T ss_pred cEEEEEEee
Confidence 399998753
No 78
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.11 E-value=2.9e-10 Score=76.67 Aligned_cols=84 Identities=15% Similarity=0.255 Sum_probs=63.6
Q ss_pred hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEE----E
Q 034578 5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHV----G 72 (90)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~----~ 72 (90)
++..++.+++............+||+|||+|+++..++...|+.+++++|. +.+++.|.+ .+++..+ .
T Consensus 130 TEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me 209 (328)
T KOG2904|consen 130 TEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIME 209 (328)
T ss_pred HHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccc
Confidence 456677777766532234556899999999999999999999999999999 888888876 3777777 4
Q ss_pred ecCCCCC--C-c-ccEEEee
Q 034578 73 GDMFDAI--P-N-ADAVFMK 88 (90)
Q Consensus 73 ~d~~~~~--p-~-~D~i~l~ 88 (90)
.|.+.+. + + .|+++.+
T Consensus 210 ~d~~~~~~l~~~~~dllvsN 229 (328)
T KOG2904|consen 210 SDASDEHPLLEGKIDLLVSN 229 (328)
T ss_pred cccccccccccCceeEEecC
Confidence 5555533 2 2 7887654
No 79
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.11 E-value=3.9e-10 Score=76.31 Aligned_cols=65 Identities=15% Similarity=0.149 Sum_probs=52.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc-ccEEEeec
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN-ADAVFMKV 89 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~-~D~i~l~~ 89 (90)
+..++||+|||+|..+..+++. ..+++++|. +.+++.+++ .-++++...|+.+ .+++ +|+|+...
T Consensus 120 ~~~~vLDlGcG~G~~~~~la~~--g~~V~avD~s~~ai~~~~~~~~~~~l~v~~~~~D~~~~~~~~~fD~I~~~~ 192 (287)
T PRK12335 120 KPGKALDLGCGQGRNSLYLALL--GFDVTAVDINQQSLENLQEIAEKENLNIRTGLYDINSASIQEEYDFILSTV 192 (287)
T ss_pred CCCCEEEeCCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHHcCCceEEEEechhcccccCCccEEEEcc
Confidence 4569999999999999999985 579999999 999887754 2368888888876 3454 99998764
No 80
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.09 E-value=7.5e-10 Score=74.04 Aligned_cols=66 Identities=27% Similarity=0.380 Sum_probs=57.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC------CeEEEeeh-HHHHHhCCC---------CCCeeEEEecCCC-CCCc--cc
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPH------IKGINFDL-QHVIATAPT---------HEGVSHVGGDMFD-AIPN--AD 83 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~------~~~~~~D~-p~~~~~a~~---------~~rv~~~~~d~~~-~~p~--~D 83 (90)
...++||++||||-++-.+++..+. .+++++|+ |+|++.+++ ..++.|+.+|..+ |+|. +|
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~D 179 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSFD 179 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcce
Confidence 4478999999999999999999887 89999999 999988764 2569999999988 7775 89
Q ss_pred EEEee
Q 034578 84 AVFMK 88 (90)
Q Consensus 84 ~i~l~ 88 (90)
.|+++
T Consensus 180 ~yTia 184 (296)
T KOG1540|consen 180 AYTIA 184 (296)
T ss_pred eEEEe
Confidence 99985
No 81
>PLN03075 nicotianamine synthase; Provisional
Probab=99.09 E-value=6.3e-10 Score=75.85 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=52.8
Q ss_pred CCCeEEEecCCchHHHHH--HHHHCCCCeEEEeeh-HHHHHhCCC--------CCCeeEEEecCCCCC---CcccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAE--IVKSYPHIKGINFDL-QHVIATAPT--------HEGVSHVGGDMFDAI---PNADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~--l~~~~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~d~~~~~---p~~D~i~l~ 88 (90)
++++|+|||||.|-++.. +++.+|+.+++++|+ |.+++.|++ .+|++|..+|..+.. .+||+|++.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~ 202 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA 202 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe
Confidence 678999999998854333 345689999999999 999988865 268999999998732 349999975
No 82
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.08 E-value=6.2e-10 Score=78.30 Aligned_cols=75 Identities=17% Similarity=0.280 Sum_probs=59.0
Q ss_pred HHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC---CCC
Q 034578 11 AFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD---AIP 80 (90)
Q Consensus 11 ~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~---~~p 80 (90)
.+++.+. ......+||||||+|.++..+++++|+..++++|+ +.+++.+.+ -+++.++.+|... .++
T Consensus 113 ~~~~~~~---~~~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~NV~~i~~DA~~ll~~~~ 189 (390)
T PRK14121 113 NFLDFIS---KNQEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKNLLIINYDARLLLELLP 189 (390)
T ss_pred HHHHHhc---CCCCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHhhhhCC
Confidence 4455554 23456899999999999999999999999999999 888777643 2689999999743 355
Q ss_pred c--ccEEEee
Q 034578 81 N--ADAVFMK 88 (90)
Q Consensus 81 ~--~D~i~l~ 88 (90)
. +|.|+++
T Consensus 190 ~~s~D~I~ln 199 (390)
T PRK14121 190 SNSVEKIFVH 199 (390)
T ss_pred CCceeEEEEe
Confidence 3 7998875
No 83
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=99.08 E-value=6.7e-10 Score=75.72 Aligned_cols=76 Identities=16% Similarity=0.353 Sum_probs=61.3
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD- 77 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~- 77 (90)
..++.+++... ..+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++ .++++++.+|+.+
T Consensus 23 ~i~~~Iv~~~~---~~~~~~VLEIG~G~G~LT~~Ll~~~--~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~ 97 (294)
T PTZ00338 23 LVLDKIVEKAA---IKPTDTVLEIGPGTGNLTEKLLQLA--KKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKT 97 (294)
T ss_pred HHHHHHHHhcC---CCCcCEEEEecCchHHHHHHHHHhC--CcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhh
Confidence 45667777666 5667899999999999999999874 46899998 888887764 3689999999988
Q ss_pred CCCcccEEEe
Q 034578 78 AIPNADAVFM 87 (90)
Q Consensus 78 ~~p~~D~i~l 87 (90)
+++.+|.++.
T Consensus 98 ~~~~~d~Vva 107 (294)
T PTZ00338 98 EFPYFDVCVA 107 (294)
T ss_pred cccccCEEEe
Confidence 5666887765
No 84
>PRK04266 fibrillarin; Provisional
Probab=99.08 E-value=1.7e-09 Score=71.27 Aligned_cols=67 Identities=9% Similarity=0.179 Sum_probs=54.1
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHH----hCCCCCCeeEEEecCCCC-----CCc-ccEEEe
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIA----TAPTHEGVSHVGGDMFDA-----IPN-ADAVFM 87 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~----~a~~~~rv~~~~~d~~~~-----~p~-~D~i~l 87 (90)
..+..+|||+|||+|.++..+++..+..+++++|+ |.|++ .+++..++.++.+|..++ +++ +|+++.
T Consensus 70 i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~~nv~~i~~D~~~~~~~~~l~~~~D~i~~ 147 (226)
T PRK04266 70 IKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEERKNIIPILADARKPERYAHVVEKVDVIYQ 147 (226)
T ss_pred CCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhcCCcEEEECCCCCcchhhhccccCCEEEE
Confidence 55678999999999999999999988778999999 87766 444457799999998652 233 899874
No 85
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.07 E-value=7.4e-10 Score=72.05 Aligned_cols=66 Identities=17% Similarity=0.221 Sum_probs=52.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCCcccEEEeec
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIPNADAVFMKV 89 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p~~D~i~l~~ 89 (90)
.+..+|||||||+|.++..+++.. .+++++|+ +.+++.+++. +++++..+|+......+|+|++..
T Consensus 62 ~~~~~vLDvGcG~G~~~~~l~~~~--~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~fD~v~~~~ 135 (230)
T PRK07580 62 LTGLRILDAGCGVGSLSIPLARRG--AKVVASDISPQMVEEARERAPEAGLAGNITFEVGDLESLLGRFDTVVCLD 135 (230)
T ss_pred CCCCEEEEEeCCCCHHHHHHHHcC--CEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCchhccCCcCEEEEcc
Confidence 345799999999999999999875 45999999 9999888651 479999999533323499998754
No 86
>PRK14967 putative methyltransferase; Provisional
Probab=99.07 E-value=8.1e-10 Score=72.25 Aligned_cols=67 Identities=18% Similarity=0.215 Sum_probs=53.6
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCCCC--cccEEEee
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDAIP--NADAVFMK 88 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~~p--~~D~i~l~ 88 (90)
..+..+|||+|||+|.++..+++. +..+++++|+ |.+++.++++ .+++++.+|+.+.++ .+|+|+++
T Consensus 34 ~~~~~~vLDlGcG~G~~~~~la~~-~~~~v~~vD~s~~~l~~a~~n~~~~~~~~~~~~~d~~~~~~~~~fD~Vi~n 108 (223)
T PRK14967 34 LGPGRRVLDLCTGSGALAVAAAAA-GAGSVTAVDISRRAVRSARLNALLAGVDVDVRRGDWARAVEFRPFDVVVSN 108 (223)
T ss_pred cCCCCeEEEecCCHHHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHhCCeeEEEECchhhhccCCCeeEEEEC
Confidence 345579999999999999999886 3458999999 9998877652 358899999987544 39999975
No 87
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.07 E-value=1.2e-09 Score=70.28 Aligned_cols=72 Identities=21% Similarity=0.300 Sum_probs=57.7
Q ss_pred HhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C-
Q 034578 13 VSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I- 79 (90)
Q Consensus 13 ~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~- 79 (90)
+..++ ..+..+++|+|||+|.++..+++.. +..+++++|+ |.+++.+++ .++++++.+|+.+. .
T Consensus 33 l~~l~---~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~ 109 (198)
T PRK00377 33 LSKLR---LRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTIN 109 (198)
T ss_pred HHHcC---CCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcC
Confidence 45555 5667899999999999999998874 6789999999 999987764 25789999998762 3
Q ss_pred CcccEEEe
Q 034578 80 PNADAVFM 87 (90)
Q Consensus 80 p~~D~i~l 87 (90)
+.+|.|++
T Consensus 110 ~~~D~V~~ 117 (198)
T PRK00377 110 EKFDRIFI 117 (198)
T ss_pred CCCCEEEE
Confidence 34899987
No 88
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.07 E-value=1.4e-09 Score=70.44 Aligned_cols=77 Identities=14% Similarity=0.213 Sum_probs=59.3
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCC
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAI 79 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~ 79 (90)
.....+++.++ ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.++++ .+++++.+|..+.+
T Consensus 65 ~~~~~l~~~l~---~~~~~~VLeiG~GsG~~t~~la~~~--~~v~~vd~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~ 139 (212)
T PRK00312 65 YMVARMTELLE---LKPGDRVLEIGTGSGYQAAVLAHLV--RRVFSVERIKTLQWEAKRRLKQLGLHNVSVRHGDGWKGW 139 (212)
T ss_pred HHHHHHHHhcC---CCCCCEEEEECCCccHHHHHHHHHh--CEEEEEeCCHHHHHHHHHHHHHCCCCceEEEECCcccCC
Confidence 34455566565 5667899999999999998888775 37999998 9988877652 46999999987744
Q ss_pred C---cccEEEee
Q 034578 80 P---NADAVFMK 88 (90)
Q Consensus 80 p---~~D~i~l~ 88 (90)
+ .||+|++.
T Consensus 140 ~~~~~fD~I~~~ 151 (212)
T PRK00312 140 PAYAPFDRILVT 151 (212)
T ss_pred CcCCCcCEEEEc
Confidence 3 39999875
No 89
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.07 E-value=6.9e-10 Score=74.24 Aligned_cols=69 Identities=19% Similarity=0.283 Sum_probs=56.0
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC-CCCc--ccEEEeec
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD-AIPN--ADAVFMKV 89 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~-~~p~--~D~i~l~~ 89 (90)
+.+..+|||+|||+|..+..+++.. +..+++++|+ |.+++.+++ .++++++.+|+.+ +++. +|+|+...
T Consensus 75 ~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 75 LKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 3456899999999999888777764 6678999999 999998876 2589999999876 5543 89998654
No 90
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.06 E-value=5.8e-10 Score=76.67 Aligned_cols=65 Identities=17% Similarity=0.085 Sum_probs=51.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----------CCeeEEEecCCCCCCcccEEEeec
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----------EGVSHVGGDMFDAIPNADAVFMKV 89 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----------~rv~~~~~d~~~~~p~~D~i~l~~ 89 (90)
+..+|||+|||+|.++..+++. +.+++++|+ +.|++.++++ .+++|..+|+.+.-..||+|++..
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~--g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l~~~fD~Vv~~~ 220 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALE--GAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESLSGKYDTVTCLD 220 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHC--CCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhcCCCcCEEEEcC
Confidence 3579999999999999999986 578999999 9999887652 257888888754223499998653
No 91
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.06 E-value=8.4e-10 Score=75.84 Aligned_cols=76 Identities=14% Similarity=0.093 Sum_probs=55.6
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC-------CCCCeeEEEecCCC-CC-
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP-------THEGVSHVGGDMFD-AI- 79 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~-------~~~rv~~~~~d~~~-~~- 79 (90)
..++..+. ..+..+|||||||+|.++..++...+. +++++|. +.++.+++ ...++.+...++.+ +.
T Consensus 111 ~~~l~~l~---~~~g~~VLDvGCG~G~~~~~~~~~g~~-~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~ 186 (314)
T TIGR00452 111 DRVLPHLS---PLKGRTILDVGCGSGYHMWRMLGHGAK-SLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHEL 186 (314)
T ss_pred HHHHHhcC---CCCCCEEEEeccCCcHHHHHHHHcCCC-EEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCC
Confidence 34555554 334679999999999999999988764 7999998 77765432 13678888888765 32
Q ss_pred CcccEEEeec
Q 034578 80 PNADAVFMKV 89 (90)
Q Consensus 80 p~~D~i~l~~ 89 (90)
..||+|++..
T Consensus 187 ~~FD~V~s~g 196 (314)
T TIGR00452 187 YAFDTVFSMG 196 (314)
T ss_pred CCcCEEEEcc
Confidence 2499998764
No 92
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.05 E-value=3.2e-10 Score=78.11 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=52.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC-CCC--cccEEEeec
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD-AIP--NADAVFMKV 89 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~-~~p--~~D~i~l~~ 89 (90)
...+|||||||+|.++..+++ ++.+++++|. +.+++.|++. .+++++.+|+.+ +.+ .||+|++..
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~--~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~ 206 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLAR--MGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLE 206 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHH--cCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhh
Confidence 346899999999999998886 4689999999 9999988641 479999999865 333 399999754
No 93
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.05 E-value=8.2e-10 Score=70.74 Aligned_cols=65 Identities=25% Similarity=0.468 Sum_probs=51.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC---CCC-c-ccEEEeec
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD---AIP-N-ADAVFMKV 89 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~---~~p-~-~D~i~l~~ 89 (90)
+..+|||+|||+|.++..+++. ...+++++|+ +.+++.+++ .+++++.+|+.+ +++ . +|+|++++
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~-~~~~~~giD~s~~~i~~a~~-~~~~~~~~d~~~~l~~~~~~sfD~Vi~~~ 83 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDE-KQVRGYGIEIDQDGVLACVA-RGVNVIQGDLDEGLEAFPDKSFDYVILSQ 83 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhc-cCCcEEEEeCCHHHHHHHHH-cCCeEEEEEhhhcccccCCCCcCEEEEhh
Confidence 4568999999999999988875 4567899999 899888765 357888899865 233 2 89999875
No 94
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.04 E-value=7.9e-10 Score=78.77 Aligned_cols=78 Identities=9% Similarity=0.137 Sum_probs=61.0
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA 78 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~ 78 (90)
+.+.+.+++.+. ..+..+|||+|||+|.++..+++.. .+++++|. +.+++.|+++ ++++++.+|+.+.
T Consensus 283 e~l~~~vl~~l~---~~~~~~VLDlgcGtG~~sl~la~~~--~~V~gvD~s~~al~~A~~n~~~~~~~~v~~~~~d~~~~ 357 (443)
T PRK13168 283 QKMVARALEWLD---PQPGDRVLDLFCGLGNFTLPLARQA--AEVVGVEGVEAMVERARENARRNGLDNVTFYHANLEED 357 (443)
T ss_pred HHHHHHHHHHhc---CCCCCEEEEEeccCCHHHHHHHHhC--CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEeChHHh
Confidence 445566666555 4456799999999999999999885 68999999 9999988762 5799999998652
Q ss_pred -----CC-c-ccEEEee
Q 034578 79 -----IP-N-ADAVFMK 88 (90)
Q Consensus 79 -----~p-~-~D~i~l~ 88 (90)
++ . +|+|++.
T Consensus 358 l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 358 FTDQPWALGGFDKVLLD 374 (443)
T ss_pred hhhhhhhcCCCCEEEEC
Confidence 22 2 8999874
No 95
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.02 E-value=1.7e-09 Score=69.40 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=54.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCCCCcccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDAIPNADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~~p~~D~i~l~ 88 (90)
...+|+|+|||||.+++..+...| .+++++|+ |++++.++++ +++.|+..|..+.-..+|.++|+
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa-~~V~~vdiD~~a~ei~r~N~~~l~g~v~f~~~dv~~~~~~~dtvimN 115 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGA-SRVLAVDIDPEALEIARANAEELLGDVEFVVADVSDFRGKFDTVIMN 115 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCC-cEEEEEecCHHHHHHHHHHHHhhCCceEEEEcchhhcCCccceEEEC
Confidence 356899999999999999988765 57999999 9999998874 68999999997744457888875
No 96
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.02 E-value=1.4e-09 Score=77.74 Aligned_cols=79 Identities=22% Similarity=0.300 Sum_probs=60.9
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC---
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD--- 77 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~--- 77 (90)
+.....+++.++ ..+..++||+|||+|.++..+++.+ .+++++|+ +.+++.+++ .++++++.+|+.+
T Consensus 23 ~~~~~~il~~l~---~~~~~~vLDlGcG~G~~~~~la~~~--~~v~giD~s~~~l~~a~~~~~~~~~i~~~~~d~~~~~~ 97 (475)
T PLN02336 23 KEERPEILSLLP---PYEGKSVLELGAGIGRFTGELAKKA--GQVIALDFIESVIKKNESINGHYKNVKFMCADVTSPDL 97 (475)
T ss_pred chhhhHHHhhcC---ccCCCEEEEeCCCcCHHHHHHHhhC--CEEEEEeCCHHHHHHHHHHhccCCceEEEEeccccccc
Confidence 334566677666 4456799999999999999999985 47899999 999987653 3579999999964
Q ss_pred CCCc--ccEEEeec
Q 034578 78 AIPN--ADAVFMKV 89 (90)
Q Consensus 78 ~~p~--~D~i~l~~ 89 (90)
++|. +|+|+++.
T Consensus 98 ~~~~~~fD~I~~~~ 111 (475)
T PLN02336 98 NISDGSVDLIFSNW 111 (475)
T ss_pred CCCCCCEEEEehhh
Confidence 3443 89999764
No 97
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.02 E-value=2.4e-09 Score=69.05 Aligned_cols=75 Identities=12% Similarity=0.147 Sum_probs=54.7
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC-CCCc
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD-AIPN 81 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~-~~p~ 81 (90)
.+.+++..+ ..++.++||+|||.|..+..|+++ +..++++|. +.+++.+++ +-.++....|+.+ .+++
T Consensus 19 hs~v~~a~~---~~~~g~~LDlgcG~GRNalyLA~~--G~~VtAvD~s~~al~~l~~~a~~~~l~i~~~~~Dl~~~~~~~ 93 (192)
T PF03848_consen 19 HSEVLEAVP---LLKPGKALDLGCGEGRNALYLASQ--GFDVTAVDISPVALEKLQRLAEEEGLDIRTRVADLNDFDFPE 93 (192)
T ss_dssp -HHHHHHCT---TS-SSEEEEES-TTSHHHHHHHHT--T-EEEEEESSHHHHHHHHHHHHHTT-TEEEEE-BGCCBS-TT
T ss_pred cHHHHHHHh---hcCCCcEEEcCCCCcHHHHHHHHC--CCeEEEEECCHHHHHHHHHHHhhcCceeEEEEecchhccccC
Confidence 455667777 446789999999999999999998 688999999 877776543 3458899999987 5555
Q ss_pred -ccEEEee
Q 034578 82 -ADAVFMK 88 (90)
Q Consensus 82 -~D~i~l~ 88 (90)
+|+|+..
T Consensus 94 ~yD~I~st 101 (192)
T PF03848_consen 94 EYDFIVST 101 (192)
T ss_dssp TEEEEEEE
T ss_pred CcCEEEEE
Confidence 9998753
No 98
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.01 E-value=2.8e-09 Score=73.52 Aligned_cols=76 Identities=21% Similarity=0.346 Sum_probs=59.1
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCCCC-
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPT------HEGVSHVGGDMFDAIP- 80 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~~p- 80 (90)
..+++.++ ..+..+|||+|||+|.++..+++..+. .+++++|+ |.+++.|++ .++++++.+|..+.++
T Consensus 70 a~ll~~L~---i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~nV~~i~gD~~~~~~~ 146 (322)
T PRK13943 70 ALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIENVIFVCGDGYYGVPE 146 (322)
T ss_pred HHHHHhcC---CCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCcEEEEeCChhhcccc
Confidence 34455554 556689999999999999999998864 57999999 998887765 2579999999876332
Q ss_pred --cccEEEee
Q 034578 81 --NADAVFMK 88 (90)
Q Consensus 81 --~~D~i~l~ 88 (90)
.+|+|++.
T Consensus 147 ~~~fD~Ii~~ 156 (322)
T PRK13943 147 FAPYDVIFVT 156 (322)
T ss_pred cCCccEEEEC
Confidence 38999874
No 99
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.01 E-value=2.6e-09 Score=75.06 Aligned_cols=76 Identities=13% Similarity=0.114 Sum_probs=58.3
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---CCeeEEEecCCCCCCcccE
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---EGVSHVGGDMFDAIPNADA 84 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~~~~~d~~~~~p~~D~ 84 (90)
...+++.+. ..+..+|||||||+|.++..+++++ +.+++++|+ |.+++.++++ .++++...|+.+.-..+|.
T Consensus 156 ~~~l~~~l~---l~~g~rVLDIGcG~G~~a~~la~~~-g~~V~giDlS~~~l~~A~~~~~~l~v~~~~~D~~~l~~~fD~ 231 (383)
T PRK11705 156 LDLICRKLQ---LKPGMRVLDIGCGWGGLARYAAEHY-GVSVVGVTISAEQQKLAQERCAGLPVEIRLQDYRDLNGQFDR 231 (383)
T ss_pred HHHHHHHhC---CCCCCEEEEeCCCccHHHHHHHHHC-CCEEEEEeCCHHHHHHHHHHhccCeEEEEECchhhcCCCCCE
Confidence 445566665 5667899999999999999999876 579999999 9999888752 3478888887542224899
Q ss_pred EEee
Q 034578 85 VFMK 88 (90)
Q Consensus 85 i~l~ 88 (90)
|+..
T Consensus 232 Ivs~ 235 (383)
T PRK11705 232 IVSV 235 (383)
T ss_pred EEEe
Confidence 8753
No 100
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.00 E-value=9.2e-10 Score=71.34 Aligned_cols=79 Identities=11% Similarity=0.139 Sum_probs=57.7
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCC
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAI 79 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~ 79 (90)
.+.+.+++.+.. .....++||+|||+|.++.+++.+.. .+++++|. |.+++.++++ .+++++.+|+++.+
T Consensus 39 ~v~e~l~~~l~~--~~~~~~vLDl~~GsG~l~l~~lsr~a-~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l 115 (199)
T PRK10909 39 RVRETLFNWLAP--VIVDARCLDCFAGSGALGLEALSRYA-AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFL 115 (199)
T ss_pred HHHHHHHHHHhh--hcCCCEEEEcCCCccHHHHHHHHcCC-CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHH
Confidence 344445554431 23457999999999999998766653 68999999 9988877652 57999999987733
Q ss_pred ---C-cccEEEee
Q 034578 80 ---P-NADAVFMK 88 (90)
Q Consensus 80 ---p-~~D~i~l~ 88 (90)
. .+|+|++.
T Consensus 116 ~~~~~~fDlV~~D 128 (199)
T PRK10909 116 AQPGTPHNVVFVD 128 (199)
T ss_pred hhcCCCceEEEEC
Confidence 2 38999874
No 101
>PRK14968 putative methyltransferase; Provisional
Probab=98.99 E-value=2.3e-09 Score=67.58 Aligned_cols=65 Identities=20% Similarity=0.372 Sum_probs=53.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CC-eeEEEecCCCCCCc--ccEEEee
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EG-VSHVGGDMFDAIPN--ADAVFMK 88 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~r-v~~~~~d~~~~~p~--~D~i~l~ 88 (90)
.+..++||+|||+|.++..++++ ..+++++|+ |.+++.++++ .+ +.++.+|+.+++++ +|+|+++
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~--~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n 97 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKN--GKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFN 97 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhh--cceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEEC
Confidence 35578999999999999999998 588999999 9998877541 22 88999999886543 8999865
No 102
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.97 E-value=4.2e-09 Score=71.41 Aligned_cols=65 Identities=18% Similarity=0.260 Sum_probs=49.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCCC-cccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAIP-NADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~p-~~D~i~l~ 88 (90)
+..+|||+|||+|.++..+++. +..+++++|+ |.+++.++++ .++.+..++.....+ .||+|+.+
T Consensus 159 ~g~~VLDvGcGsG~lai~aa~~-g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~~~~~fDlVvan 232 (288)
T TIGR00406 159 KDKNVIDVGCGSGILSIAALKL-GAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQPIEGKADVIVAN 232 (288)
T ss_pred CCCEEEEeCCChhHHHHHHHHc-CCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccccCCCceEEEEe
Confidence 4589999999999999988875 4568999999 9999888762 456666666433333 39999875
No 103
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.97 E-value=2.1e-09 Score=70.14 Aligned_cols=78 Identities=15% Similarity=0.247 Sum_probs=60.5
Q ss_pred hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCCC
Q 034578 8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDAI 79 (90)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~~ 79 (90)
+...+++.++ +.+..+|||||||+|+++.-+++.. +..+++.+|. |..++.|++ ..+++++.+|....+
T Consensus 60 ~~a~~l~~L~---l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~nv~~~~gdg~~g~ 136 (209)
T PF01135_consen 60 MVARMLEALD---LKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDNVEVVVGDGSEGW 136 (209)
T ss_dssp HHHHHHHHTT---C-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHSEEEEES-GGGTT
T ss_pred HHHHHHHHHh---cCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCceeEEEcchhhcc
Confidence 4556677777 7788999999999999999999885 5567999998 999988876 258999999988755
Q ss_pred Cc---ccEEEee
Q 034578 80 PN---ADAVFMK 88 (90)
Q Consensus 80 p~---~D~i~l~ 88 (90)
+. ||.|++.
T Consensus 137 ~~~apfD~I~v~ 148 (209)
T PF01135_consen 137 PEEAPFDRIIVT 148 (209)
T ss_dssp GGG-SEEEEEES
T ss_pred ccCCCcCEEEEe
Confidence 43 8999874
No 104
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.97 E-value=6.7e-10 Score=74.36 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=51.8
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------C----CeeEEEecCCCCCCcccEEEeec
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------E----GVSHVGGDMFDAIPNADAVFMKV 89 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~----rv~~~~~d~~~~~p~~D~i~l~~ 89 (90)
.+|||+|||.|.++..|++. +++++++|. +.+++.|++. . |+++...|.....+.||+|+++-
T Consensus 91 ~~ilDvGCGgGLLSepLArl--ga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~~~fDaVvcse 166 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARL--GAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLTGKFDAVVCSE 166 (282)
T ss_pred ceEEEeccCccccchhhHhh--CCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcccccceeeeHH
Confidence 67999999999999999998 488999999 9999998761 2 57777777755455699998763
No 105
>PRK04148 hypothetical protein; Provisional
Probab=98.96 E-value=5e-09 Score=64.10 Aligned_cols=76 Identities=18% Similarity=0.286 Sum_probs=58.6
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchH-HHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCC----
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGT-VLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIP---- 80 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p---- 80 (90)
.+++.+.+.++ ..+..+++|||||+|. ++..|.+. +..++++|+ |.+++.+++. .++++.+|+|++-+
T Consensus 3 ~i~~~l~~~~~---~~~~~kileIG~GfG~~vA~~L~~~--G~~ViaIDi~~~aV~~a~~~-~~~~v~dDlf~p~~~~y~ 76 (134)
T PRK04148 3 TIAEFIAENYE---KGKNKKIVELGIGFYFKVAKKLKES--GFDVIVIDINEKAVEKAKKL-GLNAFVDDLFNPNLEIYK 76 (134)
T ss_pred HHHHHHHHhcc---cccCCEEEEEEecCCHHHHHHHHHC--CCEEEEEECCHHHHHHHHHh-CCeEEECcCCCCCHHHHh
Confidence 35666777776 2345789999999996 88888865 578999999 9999888765 36899999999533
Q ss_pred cccEEEee
Q 034578 81 NADAVFMK 88 (90)
Q Consensus 81 ~~D~i~l~ 88 (90)
.+|+|+--
T Consensus 77 ~a~liysi 84 (134)
T PRK04148 77 NAKLIYSI 84 (134)
T ss_pred cCCEEEEe
Confidence 38988753
No 106
>PRK01581 speE spermidine synthase; Validated
Probab=98.96 E-value=3.2e-09 Score=74.23 Aligned_cols=66 Identities=21% Similarity=0.233 Sum_probs=55.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------------CCCeeEEEecCCCC---CC-cccE
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------------HEGVSHVGGDMFDA---IP-NADA 84 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------------~~rv~~~~~d~~~~---~p-~~D~ 84 (90)
.+.+||++|||+|..+.++++..+..+++.+|+ |.+++.|++ .+|++++.+|..+. .+ .||+
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~YDV 229 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLYDV 229 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCccE
Confidence 568999999999999999998666778999999 999998873 37999999998863 23 3999
Q ss_pred EEee
Q 034578 85 VFMK 88 (90)
Q Consensus 85 i~l~ 88 (90)
|++-
T Consensus 230 IIvD 233 (374)
T PRK01581 230 IIID 233 (374)
T ss_pred EEEc
Confidence 9874
No 107
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=98.95 E-value=2e-09 Score=73.78 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=52.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC---CC-cccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA---IP-NADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~---~p-~~D~i~l~ 88 (90)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.|+++ ++++|+.+|+.+. .. .+|+|++.
T Consensus 173 ~~~~VLDl~cG~G~~sl~la~~--~~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~~~~~D~Vv~d 247 (315)
T PRK03522 173 PPRSMWDLFCGVGGFGLHCATP--GMQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQGEVPDLVLVN 247 (315)
T ss_pred CCCEEEEccCCCCHHHHHHHhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhcCCCCeEEEEC
Confidence 3579999999999999999984 478999999 9999988752 5799999999762 22 38999874
No 108
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=98.94 E-value=5.9e-09 Score=63.94 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=44.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCC--cccEEEeecC
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIP--NADAVFMKVA 90 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p--~~D~i~l~~v 90 (90)
....+|||+|||+|.++..+++... +++++|+ +.+++. .+......+..+ ..+ .+|+|++..+
T Consensus 21 ~~~~~vLDiGcG~G~~~~~l~~~~~--~~~g~D~~~~~~~~----~~~~~~~~~~~~~~~~~~~fD~i~~~~~ 87 (161)
T PF13489_consen 21 KPGKRVLDIGCGTGSFLRALAKRGF--EVTGVDISPQMIEK----RNVVFDNFDAQDPPFPDGSFDLIICNDV 87 (161)
T ss_dssp TTTSEEEEESSTTSHHHHHHHHTTS--EEEEEESSHHHHHH----TTSEEEEEECHTHHCHSSSEEEEEEESS
T ss_pred CCCCEEEEEcCCCCHHHHHHHHhCC--EEEEEECCHHHHhh----hhhhhhhhhhhhhhccccchhhHhhHHH
Confidence 4678999999999999999976633 9999999 899887 222222222222 222 3999998764
No 109
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.94 E-value=1e-08 Score=67.08 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=50.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------------------CCCeeEEEecCCC-C---C
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------------------HEGVSHVGGDMFD-A---I 79 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------------~~rv~~~~~d~~~-~---~ 79 (90)
+..++||+|||.|..+..|+++ +.+++++|+ |.+++.+.. ..+++++.+|+++ + .
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~--G~~V~gvD~S~~Ai~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~ 111 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQ--GHRVLGVELSEIAVEQFFAENGLTPTVTQQGEFTRYRAGNIEIFCGDFFALTAADL 111 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhC--CCeEEEEeCCHHHHHHHHHHcCCCcceeccccceeeecCceEEEEccCCCCCcccC
Confidence 4579999999999999999986 778999999 998887411 2469999999998 3 2
Q ss_pred CcccEEEe
Q 034578 80 PNADAVFM 87 (90)
Q Consensus 80 p~~D~i~l 87 (90)
+.+|.|+-
T Consensus 112 ~~fD~i~D 119 (213)
T TIGR03840 112 GPVDAVYD 119 (213)
T ss_pred CCcCEEEe
Confidence 33787763
No 110
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.93 E-value=4.8e-09 Score=71.51 Aligned_cols=64 Identities=9% Similarity=0.171 Sum_probs=50.8
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD 77 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~ 77 (90)
++.+++.++ +..+|||+|||+|..+..++++.+ ..+++++|+ ++|++.++++ .++.++.+|+.+
T Consensus 54 ~~~ia~~~~-----~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~ 126 (301)
T TIGR03438 54 ADEIAAATG-----AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQ 126 (301)
T ss_pred HHHHHHhhC-----CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccc
Confidence 444444444 457899999999999999999987 689999999 9998877541 346778999987
No 111
>PRK00811 spermidine synthase; Provisional
Probab=98.93 E-value=3.9e-09 Score=71.49 Aligned_cols=66 Identities=23% Similarity=0.340 Sum_probs=54.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----------CCCeeEEEecCCCCC---C-cccEEE
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----------HEGVSHVGGDMFDAI---P-NADAVF 86 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----------~~rv~~~~~d~~~~~---p-~~D~i~ 86 (90)
++++||++|||+|.++.++++..+..+++++|+ |.+++.+++ .+|++++.+|..+.+ + .||+|+
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvIi 155 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVII 155 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEEE
Confidence 568999999999999999998656678999999 999988864 368999999987632 2 399998
Q ss_pred ee
Q 034578 87 MK 88 (90)
Q Consensus 87 l~ 88 (90)
+-
T Consensus 156 ~D 157 (283)
T PRK00811 156 VD 157 (283)
T ss_pred EC
Confidence 73
No 112
>PLN02366 spermidine synthase
Probab=98.92 E-value=5.9e-09 Score=71.55 Aligned_cols=66 Identities=27% Similarity=0.350 Sum_probs=53.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCC---CCC--cccEE
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFD---AIP--NADAV 85 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~---~~p--~~D~i 85 (90)
.++++||+||||.|.++.++++..+..+++.+|+ |.+++.+++ .+|++++.+|..+ ..+ .||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 4578999999999999999987644468999999 888888765 3689999999754 333 39999
Q ss_pred Ee
Q 034578 86 FM 87 (90)
Q Consensus 86 ~l 87 (90)
++
T Consensus 170 i~ 171 (308)
T PLN02366 170 IV 171 (308)
T ss_pred EE
Confidence 87
No 113
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=98.90 E-value=5.8e-09 Score=71.18 Aligned_cols=62 Identities=18% Similarity=0.225 Sum_probs=45.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCCC--CcccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDAI--PNADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~~--p~~D~i~l~ 88 (90)
+..+|||+|||||.+++..++... .+++++|+ |.+++.|+++ +++.+. . .... ..||+|+.+
T Consensus 161 ~g~~vLDvG~GSGILaiaA~klGA-~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~-~~~~~~~~~dlvvAN 232 (295)
T PF06325_consen 161 PGKRVLDVGCGSGILAIAAAKLGA-KKVVAIDIDPLAVEAARENAELNGVEDRIEVS--L-SEDLVEGKFDLVVAN 232 (295)
T ss_dssp TTSEEEEES-TTSHHHHHHHHTTB-SEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--C-TSCTCCS-EEEEEEE
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--E-ecccccccCCEEEEC
Confidence 457999999999999999999743 47999999 9999988862 455442 1 2222 339999865
No 114
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.89 E-value=8.1e-09 Score=68.68 Aligned_cols=41 Identities=22% Similarity=0.323 Sum_probs=34.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT 64 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 64 (90)
+..+|||+|||+|.++..+++..+ .+++++|+ |.+++.|++
T Consensus 119 ~~~~VLDiGcGsG~l~i~~~~~g~-~~v~giDis~~~l~~A~~ 160 (250)
T PRK00517 119 PGKTVLDVGCGSGILAIAAAKLGA-KKVLAVDIDPQAVEAARE 160 (250)
T ss_pred CCCEEEEeCCcHHHHHHHHHHcCC-CeEEEEECCHHHHHHHHH
Confidence 568999999999999998877544 36999999 999998876
No 115
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.89 E-value=1.9e-08 Score=65.45 Aligned_cols=63 Identities=22% Similarity=0.285 Sum_probs=49.2
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeehHHHHHhCCCCCCeeEEEecCCCC---------CC--cccEEEe
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDLQHVIATAPTHEGVSHVGGDMFDA---------IP--NADAVFM 87 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~---------~p--~~D~i~l 87 (90)
+.+..+|||+|||+|.++..++++. +..+++++|+.++ ...++++++.+|+.+. ++ .+|+|+.
T Consensus 49 ~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~----~~~~~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S 123 (209)
T PRK11188 49 FKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM----DPIVGVDFLQGDFRDELVLKALLERVGDSKVQVVMS 123 (209)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc----cCCCCcEEEecCCCChHHHHHHHHHhCCCCCCEEec
Confidence 4566799999999999999999986 5679999998333 2235699999999872 33 2899885
No 116
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.87 E-value=2.1e-08 Score=65.35 Aligned_cols=76 Identities=14% Similarity=0.251 Sum_probs=62.3
Q ss_pred hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCCCC
Q 034578 8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDAIP 80 (90)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~~p 80 (90)
.+..+++.+. +++..+||+||||+|+.+.-+++-.- +++.+|+ +...+.|++ ..++.++.+|-...+|
T Consensus 60 ~vA~m~~~L~---~~~g~~VLEIGtGsGY~aAvla~l~~--~V~siEr~~~L~~~A~~~L~~lg~~nV~v~~gDG~~G~~ 134 (209)
T COG2518 60 MVARMLQLLE---LKPGDRVLEIGTGSGYQAAVLARLVG--RVVSIERIEELAEQARRNLETLGYENVTVRHGDGSKGWP 134 (209)
T ss_pred HHHHHHHHhC---CCCCCeEEEECCCchHHHHHHHHHhC--eEEEEEEcHHHHHHHHHHHHHcCCCceEEEECCcccCCC
Confidence 3455666666 77889999999999999999998865 8899998 888888876 3679999999998665
Q ss_pred c---ccEEEee
Q 034578 81 N---ADAVFMK 88 (90)
Q Consensus 81 ~---~D~i~l~ 88 (90)
+ ||.|+..
T Consensus 135 ~~aPyD~I~Vt 145 (209)
T COG2518 135 EEAPYDRIIVT 145 (209)
T ss_pred CCCCcCEEEEe
Confidence 3 8999864
No 117
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.87 E-value=1e-08 Score=70.56 Aligned_cols=78 Identities=23% Similarity=0.201 Sum_probs=59.0
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD- 77 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~- 77 (90)
..++..++.... +.+..+|||.|||+|.++++.+.. ..+++++|+ +.+++.++++ +++.+..+|+.+
T Consensus 168 ~~la~~~~~l~~---~~~g~~vLDp~cGtG~~lieaa~~--~~~v~g~Di~~~~~~~a~~nl~~~g~~~i~~~~~D~~~l 242 (329)
T TIGR01177 168 PKLARAMVNLAR---VTEGDRVLDPFCGTGGFLIEAGLM--GAKVIGCDIDWKMVAGARINLEHYGIEDFFVKRGDATKL 242 (329)
T ss_pred HHHHHHHHHHhC---CCCcCEEEECCCCCCHHHHHHHHh--CCeEEEEcCCHHHHHHHHHHHHHhCCCCCeEEecchhcC
Confidence 345555655555 456679999999999999887664 678999999 9998877652 347899999987
Q ss_pred CCC-c-ccEEEee
Q 034578 78 AIP-N-ADAVFMK 88 (90)
Q Consensus 78 ~~p-~-~D~i~l~ 88 (90)
+++ . +|+|++.
T Consensus 243 ~~~~~~~D~Iv~d 255 (329)
T TIGR01177 243 PLSSESVDAIATD 255 (329)
T ss_pred CcccCCCCEEEEC
Confidence 543 2 8999874
No 118
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=98.86 E-value=5.1e-09 Score=67.26 Aligned_cols=64 Identities=20% Similarity=0.302 Sum_probs=51.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC--CCc-ccEEE
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA--IPN-ADAVF 86 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~--~p~-~D~i~ 86 (90)
...+|||+|||+|.++..|++.--.-+.+++|. +.+++.|+. .+.|+|.+.|++++ .+. +|+|+
T Consensus 67 ~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvl 141 (227)
T KOG1271|consen 67 QADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVL 141 (227)
T ss_pred cccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEe
Confidence 345999999999999999999865556899999 898888753 24499999999984 344 88876
No 119
>PTZ00146 fibrillarin; Provisional
Probab=98.86 E-value=3.2e-08 Score=67.42 Aligned_cols=83 Identities=12% Similarity=0.158 Sum_probs=62.5
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HH----HHHhCCCCCCeeEEEecCCCC-
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QH----VIATAPTHEGVSHVGGDMFDA- 78 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~----~~~~a~~~~rv~~~~~d~~~~- 78 (90)
..++..|+..++...+.+..+|||+|||+|.++..+++.. |.-+++++|+ |. +++.+++..++.++.+|...+
T Consensus 115 SKlaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r~NI~~I~~Da~~p~ 194 (293)
T PTZ00146 115 SKLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKRPNIVPIIEDARYPQ 194 (293)
T ss_pred cHHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhcCCCEEEECCccChh
Confidence 4566677666653114566799999999999999999986 4678999998 65 566666668899999998653
Q ss_pred -----CCcccEEEee
Q 034578 79 -----IPNADAVFMK 88 (90)
Q Consensus 79 -----~p~~D~i~l~ 88 (90)
.+.+|+|++.
T Consensus 195 ~y~~~~~~vDvV~~D 209 (293)
T PTZ00146 195 KYRMLVPMVDVIFAD 209 (293)
T ss_pred hhhcccCCCCEEEEe
Confidence 2238999874
No 120
>PRK03612 spermidine synthase; Provisional
Probab=98.85 E-value=1.2e-08 Score=74.17 Aligned_cols=65 Identities=29% Similarity=0.473 Sum_probs=54.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCC-------------CCCeeEEEecCCCC---CCc-cc
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPT-------------HEGVSHVGGDMFDA---IPN-AD 83 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~-------------~~rv~~~~~d~~~~---~p~-~D 83 (90)
++++|||+|||+|..+.++++ +|. .+++.+|+ |++++.+++ .+|++++.+|..+. .++ ||
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~-~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fD 375 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLK-YPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFD 375 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHh-CCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCC
Confidence 568999999999999999997 455 79999999 999998876 26899999998762 333 99
Q ss_pred EEEee
Q 034578 84 AVFMK 88 (90)
Q Consensus 84 ~i~l~ 88 (90)
+|++.
T Consensus 376 vIi~D 380 (521)
T PRK03612 376 VIIVD 380 (521)
T ss_pred EEEEe
Confidence 99874
No 121
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.85 E-value=1.3e-08 Score=72.52 Aligned_cols=67 Identities=12% Similarity=0.159 Sum_probs=55.1
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC---CCc-ccEEEe
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA---IPN-ADAVFM 87 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~---~p~-~D~i~l 87 (90)
..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .+++++.+|+.+. ++. +|+|++
T Consensus 248 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~~fD~Vl~ 326 (444)
T PRK14902 248 PKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTNIETKALDARKVHEKFAEKFDKILV 326 (444)
T ss_pred CCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCCcccccchhcccCCEEEE
Confidence 4456799999999999999999986 6789999999 9988877652 4589999999762 333 899986
No 122
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.83 E-value=1.2e-08 Score=69.72 Aligned_cols=77 Identities=18% Similarity=0.205 Sum_probs=62.9
Q ss_pred hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC----CCeeEEEecCCC--C-
Q 034578 8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH----EGVSHVGGDMFD--A- 78 (90)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~----~rv~~~~~d~~~--~- 78 (90)
+.+.+++.+. ..+...++|.+||.|..+..+++..| +.+++++|. |.+++.+++. +|++++.+||.+ .
T Consensus 7 ll~Evl~~L~---~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~~~ri~~i~~~f~~l~~~ 83 (296)
T PRK00050 7 LLDEVVDALA---IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKPFGRFTLVHGNFSNLKEV 83 (296)
T ss_pred cHHHHHHhhC---CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhccCCcEEEEeCCHHHHHHH
Confidence 4566777776 45567999999999999999999986 789999999 9999988752 589999999986 1
Q ss_pred CC----cccEEEe
Q 034578 79 IP----NADAVFM 87 (90)
Q Consensus 79 ~p----~~D~i~l 87 (90)
++ .+|.|++
T Consensus 84 l~~~~~~vDgIl~ 96 (296)
T PRK00050 84 LAEGLGKVDGILL 96 (296)
T ss_pred HHcCCCccCEEEE
Confidence 22 4788876
No 123
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=98.82 E-value=3.7e-08 Score=62.79 Aligned_cols=69 Identities=22% Similarity=0.314 Sum_probs=52.5
Q ss_pred HHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC---------CC
Q 034578 12 FVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA---------IP 80 (90)
Q Consensus 12 ~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~---------~p 80 (90)
+.+.+.. ..+..+|||+|||+|.++..+++++ +..+++++|+ |.+ ...+++++.+|+.+. .+
T Consensus 23 ~~~~~~~--i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----~~~~i~~~~~d~~~~~~~~~l~~~~~ 95 (188)
T TIGR00438 23 LNQKFKL--IKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----PIENVDFIRGDFTDEEVLNKIRERVG 95 (188)
T ss_pred HHHHhcc--cCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----cCCCceEEEeeCCChhHHHHHHHHhC
Confidence 4444542 5667899999999999999999887 6678999999 643 235688899998752 23
Q ss_pred --cccEEEe
Q 034578 81 --NADAVFM 87 (90)
Q Consensus 81 --~~D~i~l 87 (90)
.+|+|+.
T Consensus 96 ~~~~D~V~~ 104 (188)
T TIGR00438 96 DDKVDVVMS 104 (188)
T ss_pred CCCccEEEc
Confidence 2899986
No 124
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.82 E-value=1.3e-08 Score=69.58 Aligned_cols=66 Identities=20% Similarity=0.298 Sum_probs=47.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---CCee----EEEecCCCCCC--cccEEEee
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---EGVS----HVGGDMFDAIP--NADAVFMK 88 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~rv~----~~~~d~~~~~p--~~D~i~l~ 88 (90)
.+..+++|+|||||.++++.++.. ..+++++|+ |.+++.|+++ ..+. ....+..+... .||+|+.+
T Consensus 161 ~~g~~vlDvGcGSGILaIAa~kLG-A~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~DvIVAN 236 (300)
T COG2264 161 KKGKTVLDVGCGSGILAIAAAKLG-AKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFDVIVAN 236 (300)
T ss_pred cCCCEEEEecCChhHHHHHHHHcC-CceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCcccEEEeh
Confidence 367899999999999999999964 456999999 9999998873 2233 22222222222 38998864
No 125
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.82 E-value=1.4e-08 Score=69.99 Aligned_cols=66 Identities=17% Similarity=0.194 Sum_probs=52.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----C----CCeeEEE----ecCCCCC--C--cccEE
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----H----EGVSHVG----GDMFDAI--P--NADAV 85 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~----~rv~~~~----~d~~~~~--p--~~D~i 85 (90)
...++||||||+|.+...++.+.++.+++++|+ |.+++.|++ + +++++.. .++++.+ + .+|+|
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDli 193 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDAT 193 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEE
Confidence 357899999999999999999999999999999 999998875 2 4677754 3444432 2 38999
Q ss_pred Eee
Q 034578 86 FMK 88 (90)
Q Consensus 86 ~l~ 88 (90)
+++
T Consensus 194 vcN 196 (321)
T PRK11727 194 LCN 196 (321)
T ss_pred EeC
Confidence 875
No 126
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.81 E-value=3.5e-08 Score=70.18 Aligned_cols=75 Identities=15% Similarity=0.199 Sum_probs=58.7
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCC---C-
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDA---I- 79 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~---~- 79 (90)
..++..++ ..+..+|||+|||+|..+..+++..++.+++++|+ +.+++.++++ -+++++.+|..+. .
T Consensus 234 ~~~~~~l~---~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~~~~~~~D~~~~~~~~~ 310 (427)
T PRK10901 234 QLAATLLA---PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLKATVIVGDARDPAQWWD 310 (427)
T ss_pred HHHHHHcC---CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEcCcccchhhcc
Confidence 33444454 45668999999999999999999998889999999 9999888652 3478999998762 2
Q ss_pred Cc-ccEEEe
Q 034578 80 PN-ADAVFM 87 (90)
Q Consensus 80 p~-~D~i~l 87 (90)
+. +|.|++
T Consensus 311 ~~~fD~Vl~ 319 (427)
T PRK10901 311 GQPFDRILL 319 (427)
T ss_pred cCCCCEEEE
Confidence 23 899985
No 127
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=98.80 E-value=7.4e-09 Score=73.47 Aligned_cols=77 Identities=13% Similarity=0.196 Sum_probs=58.7
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCC-
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDA- 78 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~- 78 (90)
.+.+.+.+.+. ..+..+|||+|||+|.++..+++.. .+++++|+ +.+++.|+++ .+++++.+|+.+.
T Consensus 279 ~l~~~~~~~l~---~~~~~~vLDl~cG~G~~sl~la~~~--~~V~~vE~~~~av~~a~~n~~~~~~~nv~~~~~d~~~~l 353 (431)
T TIGR00479 279 KLVDRALEALE---LQGEELVVDAYCGVGTFTLPLAKQA--KSVVGIEVVPESVEKAQQNAELNGIANVEFLAGTLETVL 353 (431)
T ss_pred HHHHHHHHHhc---cCCCCEEEEcCCCcCHHHHHHHHhC--CEEEEEEcCHHHHHHHHHHHHHhCCCceEEEeCCHHHHH
Confidence 34455555554 4456799999999999999999875 47999999 9999988762 5799999998652
Q ss_pred ----C-C-cccEEEee
Q 034578 79 ----I-P-NADAVFMK 88 (90)
Q Consensus 79 ----~-p-~~D~i~l~ 88 (90)
. . .+|+|++.
T Consensus 354 ~~~~~~~~~~D~vi~d 369 (431)
T TIGR00479 354 PKQPWAGQIPDVLLLD 369 (431)
T ss_pred HHHHhcCCCCCEEEEC
Confidence 1 1 27998873
No 128
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.79 E-value=1.3e-08 Score=66.23 Aligned_cols=81 Identities=19% Similarity=0.296 Sum_probs=53.7
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC---------------CCCee
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT---------------HEGVS 69 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------------~~rv~ 69 (90)
-.....+++.+. +.+...++|+|||.|......+..++--+++|+++ |...+.|+. ..+++
T Consensus 28 ~~~~~~il~~~~---l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~ 104 (205)
T PF08123_consen 28 PEFVSKILDELN---LTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVE 104 (205)
T ss_dssp HHHHHHHHHHTT-----TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEE
T ss_pred HHHHHHHHHHhC---CCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccce
Confidence 344566777776 66778999999999999999998887777999998 876655532 26789
Q ss_pred EEEecCCC-C-----CCcccEEEeec
Q 034578 70 HVGGDMFD-A-----IPNADAVFMKV 89 (90)
Q Consensus 70 ~~~~d~~~-~-----~p~~D~i~l~~ 89 (90)
+..+||.+ + +.++|+|++++
T Consensus 105 l~~gdfl~~~~~~~~~s~AdvVf~Nn 130 (205)
T PF08123_consen 105 LIHGDFLDPDFVKDIWSDADVVFVNN 130 (205)
T ss_dssp EECS-TTTHHHHHHHGHC-SEEEE--
T ss_pred eeccCccccHhHhhhhcCCCEEEEec
Confidence 99999998 2 24589999986
No 129
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.78 E-value=4.2e-08 Score=64.36 Aligned_cols=63 Identities=13% Similarity=0.154 Sum_probs=50.6
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------------------CCCeeEEEecCCCC----
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------------------HEGVSHVGGDMFDA---- 78 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------------~~rv~~~~~d~~~~---- 78 (90)
.+..+|||+|||.|..+..|+++ +.+++++|+ |.+++.+.. ..++++..+|+++.
T Consensus 36 ~~~~rvL~~gCG~G~da~~LA~~--G~~V~avD~s~~Ai~~~~~~~~l~~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~ 113 (218)
T PRK13255 36 PAGSRVLVPLCGKSLDMLWLAEQ--GHEVLGVELSELAVEQFFAENGLTPQTRQSGEFEHYQAGEITIYCGDFFALTAAD 113 (218)
T ss_pred CCCCeEEEeCCCChHhHHHHHhC--CCeEEEEccCHHHHHHHHHHcCCCccccccccccccccCceEEEECcccCCCccc
Confidence 34579999999999999999985 788999999 998886521 25789999999983
Q ss_pred CCcccEEE
Q 034578 79 IPNADAVF 86 (90)
Q Consensus 79 ~p~~D~i~ 86 (90)
.+.+|.|+
T Consensus 114 ~~~fd~v~ 121 (218)
T PRK13255 114 LADVDAVY 121 (218)
T ss_pred CCCeeEEE
Confidence 23378877
No 130
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=98.76 E-value=1e-08 Score=67.51 Aligned_cols=80 Identities=18% Similarity=0.194 Sum_probs=57.7
Q ss_pred cchhhhHHHHHhhcccCCCCC--CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCC-CeeEEEecCCCC
Q 034578 3 CTTKITMKAFVSHYKVDGFNN--IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHE-GVSHVGGDMFDA 78 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~--~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~-rv~~~~~d~~~~ 78 (90)
.++...++..++.+. ++. ..-|||||||||.-+..+... .-..+++|+ |.|++.|.+.+ .=.++-+|+-+.
T Consensus 31 ~IQ~em~eRaLELLa---lp~~~~~~iLDIGCGsGLSg~vL~~~--Gh~wiGvDiSpsML~~a~~~e~egdlil~DMG~G 105 (270)
T KOG1541|consen 31 LIQAEMAERALELLA---LPGPKSGLILDIGCGSGLSGSVLSDS--GHQWIGVDISPSMLEQAVERELEGDLILCDMGEG 105 (270)
T ss_pred eehHHHHHHHHHHhh---CCCCCCcEEEEeccCCCcchheeccC--CceEEeecCCHHHHHHHHHhhhhcCeeeeecCCC
Confidence 345566666777666 444 678999999999988877765 477899999 99999997621 124667888774
Q ss_pred CC---c-ccEEEe
Q 034578 79 IP---N-ADAVFM 87 (90)
Q Consensus 79 ~p---~-~D~i~l 87 (90)
+| . ||.++.
T Consensus 106 lpfrpGtFDg~IS 118 (270)
T KOG1541|consen 106 LPFRPGTFDGVIS 118 (270)
T ss_pred CCCCCCccceEEE
Confidence 33 3 887764
No 131
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.76 E-value=6.3e-09 Score=68.93 Aligned_cols=65 Identities=20% Similarity=0.160 Sum_probs=49.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC---C--CeeEEEecCCC-CC--CcccEEEeec
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH---E--GVSHVGGDMFD-AI--PNADAVFMKV 89 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~---~--rv~~~~~d~~~-~~--p~~D~i~l~~ 89 (90)
...+|||||||-|.++..+++.. ++++++|+ +.+++.|+.. . .+.+.+....+ .. ..||+|++..
T Consensus 59 ~g~~vLDvGCGgG~Lse~mAr~G--a~VtgiD~se~~I~~Ak~ha~e~gv~i~y~~~~~edl~~~~~~FDvV~cmE 132 (243)
T COG2227 59 PGLRVLDVGCGGGILSEPLARLG--ASVTGIDASEKPIEVAKLHALESGVNIDYRQATVEDLASAGGQFDVVTCME 132 (243)
T ss_pred CCCeEEEecCCccHhhHHHHHCC--CeeEEecCChHHHHHHHHhhhhccccccchhhhHHHHHhcCCCccEEEEhh
Confidence 35689999999999999999985 99999999 9999998853 1 23344444443 12 2499998754
No 132
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=98.75 E-value=1.4e-08 Score=71.14 Aligned_cols=64 Identities=16% Similarity=0.167 Sum_probs=51.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCC----CcccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAI----PNADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~----p~~D~i~l~ 88 (90)
+..++||+|||+|.++..++.. ..+++++|+ |.+++.|+++ ++++|+.+|+.+.. ..+|+|++.
T Consensus 233 ~~~~vLDL~cG~G~~~l~la~~--~~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~~~~~D~vi~D 307 (374)
T TIGR02085 233 PVTQMWDLFCGVGGFGLHCAGP--DTQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQMSAPELVLVN 307 (374)
T ss_pred CCCEEEEccCCccHHHHHHhhc--CCeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhcCCCCCEEEEC
Confidence 3478999999999999999964 468999999 9999988752 47999999986522 238998863
No 133
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.75 E-value=4.1e-08 Score=54.87 Aligned_cols=63 Identities=19% Similarity=0.293 Sum_probs=51.2
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC------CCCCeeEEEecCCCCC---C-cccEEEeec
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP------THEGVSHVGGDMFDAI---P-NADAVFMKV 89 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~------~~~rv~~~~~d~~~~~---p-~~D~i~l~~ 89 (90)
+++|+|||+|.++..+++ .+..+++++|+ +..++.++ ...+++++.+|+.+.. + .+|++++..
T Consensus 1 ~ildig~G~G~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~ 74 (107)
T cd02440 1 RVLDLGCGTGALALALAS-GPGARVTGVDISPVALELARKAAAALLADNVEVLKGDAEELPPEADESFDVIISDP 74 (107)
T ss_pred CeEEEcCCccHHHHHHhc-CCCCEEEEEeCCHHHHHHHHHHHhcccccceEEEEcChhhhccccCCceEEEEEcc
Confidence 489999999999999998 67889999998 77777665 1367999999998832 2 389998764
No 134
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.75 E-value=5.3e-08 Score=65.78 Aligned_cols=75 Identities=16% Similarity=0.366 Sum_probs=61.4
Q ss_pred hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-C
Q 034578 8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-A 78 (90)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~ 78 (90)
+.+.|++.-+ ..+...||+||.|||.+...++++ ..+++++++ |.|++.-.+ ....+++.||++. +
T Consensus 46 v~~~I~~ka~---~k~tD~VLEvGPGTGnLT~~lLe~--~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d 120 (315)
T KOG0820|consen 46 VIDQIVEKAD---LKPTDVVLEVGPGTGNLTVKLLEA--GKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTD 120 (315)
T ss_pred HHHHHHhccC---CCCCCEEEEeCCCCCHHHHHHHHh--cCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCC
Confidence 3556666666 677899999999999999999998 577899998 888775543 3679999999999 7
Q ss_pred CCcccEEEe
Q 034578 79 IPNADAVFM 87 (90)
Q Consensus 79 ~p~~D~i~l 87 (90)
+|-+|.++-
T Consensus 121 ~P~fd~cVs 129 (315)
T KOG0820|consen 121 LPRFDGCVS 129 (315)
T ss_pred Ccccceeec
Confidence 888898875
No 135
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.71 E-value=2.8e-08 Score=65.75 Aligned_cols=68 Identities=18% Similarity=0.306 Sum_probs=55.8
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCC---------Ccc
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAI---------PNA 82 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~---------p~~ 82 (90)
..+++++||+|||+|.-+..+++..| +.+++.+|+ |++++.|++ .++++++.+|..+.+ +.|
T Consensus 66 ~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~f 145 (234)
T PLN02781 66 IMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEF 145 (234)
T ss_pred HhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCC
Confidence 34578999999999999999998865 789999999 998888875 368999999997621 239
Q ss_pred cEEEee
Q 034578 83 DAVFMK 88 (90)
Q Consensus 83 D~i~l~ 88 (90)
|+|++-
T Consensus 146 D~VfiD 151 (234)
T PLN02781 146 DFAFVD 151 (234)
T ss_pred CEEEEC
Confidence 999863
No 136
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=98.70 E-value=5.7e-08 Score=63.52 Aligned_cols=65 Identities=17% Similarity=0.121 Sum_probs=50.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCCC---CCc-ccEEEeec
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFDA---IPN-ADAVFMKV 89 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~~---~p~-~D~i~l~~ 89 (90)
+..+|||+|||+|.++..+++. ..+++++|+ +.+++.+++ ..+++++..|+.+. .+. +|+|++++
T Consensus 48 ~~~~vLdiG~G~G~~~~~l~~~--~~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~Ii~~~ 122 (233)
T PRK05134 48 FGKRVLDVGCGGGILSESMARL--GADVTGIDASEENIEVARLHALESGLKIDYRQTTAEELAAEHPGQFDVVTCME 122 (233)
T ss_pred CCCeEEEeCCCCCHHHHHHHHc--CCeEEEEcCCHHHHHHHHHHHHHcCCceEEEecCHHHhhhhcCCCccEEEEhh
Confidence 4678999999999999999886 467999999 888887764 23577888877552 223 99998764
No 137
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=98.67 E-value=6.4e-08 Score=65.11 Aligned_cols=66 Identities=26% Similarity=0.358 Sum_probs=53.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCC---CC-cccEEEe
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDA---IP-NADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~---~p-~~D~i~l 87 (90)
.+.+||+||||+|.++..+++..+..+++.+|+ |.+++.+++ .+|++++.+|.++. .+ .+|+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 457999999999999999998766778999999 888887765 26788998887652 23 3999987
Q ss_pred e
Q 034578 88 K 88 (90)
Q Consensus 88 ~ 88 (90)
.
T Consensus 152 D 152 (270)
T TIGR00417 152 D 152 (270)
T ss_pred e
Confidence 4
No 138
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.66 E-value=3.2e-08 Score=68.97 Aligned_cols=51 Identities=8% Similarity=0.226 Sum_probs=44.3
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD 77 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~ 77 (90)
.++||++||+|.++..+++... +++++|. +++++.++++ ++++++.+|+.+
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~--~v~~vE~~~~av~~a~~n~~~~~~~~v~~~~~d~~~ 256 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFR--RVLATEIAKPSVNAAQYNIAANNIDNVQIIRMSAEE 256 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCC--EEEEEECCHHHHHHHHHHHHHcCCCcEEEEEcCHHH
Confidence 4799999999999999998863 8999999 9999988762 479999999865
No 139
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.65 E-value=1.5e-07 Score=67.31 Aligned_cols=67 Identities=13% Similarity=0.164 Sum_probs=53.7
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCCC-c-ccEEEe
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAIP-N-ADAVFM 87 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~p-~-~D~i~l 87 (90)
..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+++++.+|..+..+ . ||.|++
T Consensus 248 ~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~v~~~~~Da~~~~~~~~fD~Vl~ 324 (445)
T PRK14904 248 PQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITIIETIEGDARSFSPEEQPDAILL 324 (445)
T ss_pred CCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCeEEEEeCcccccccCCCCCEEEE
Confidence 34567999999999999999888753 568999999 9998887652 468999999877333 3 899986
No 140
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.64 E-value=7.5e-08 Score=61.76 Aligned_cols=84 Identities=14% Similarity=0.247 Sum_probs=62.8
Q ss_pred cchhhhHHHHHhhcccCCCC--CCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC-----CCCeeEEEe
Q 034578 3 CTTKITMKAFVSHYKVDGFN--NIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT-----HEGVSHVGG 73 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~ 73 (90)
+.+..+.+++-+.... +. .+.-+++||||+|.++..|++.. |++.....|+ |++++.+++ ..++..+..
T Consensus 23 EDTFlLlDaLekd~~e--L~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~~~~V~t 100 (209)
T KOG3191|consen 23 EDTFLLLDALEKDAAE--LKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVHIDVVRT 100 (209)
T ss_pred chhhHHHHHHHHHHHH--HhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCccceeeh
Confidence 4455555555444432 22 36789999999999999999884 8888999999 999887654 356788999
Q ss_pred cCCCCCC--cccEEEee
Q 034578 74 DMFDAIP--NADAVFMK 88 (90)
Q Consensus 74 d~~~~~p--~~D~i~l~ 88 (90)
|+.+.+. +.|+++++
T Consensus 101 dl~~~l~~~~VDvLvfN 117 (209)
T KOG3191|consen 101 DLLSGLRNESVDVLVFN 117 (209)
T ss_pred hHHhhhccCCccEEEEC
Confidence 9988543 38998876
No 141
>PLN02823 spermine synthase
Probab=98.63 E-value=1.6e-07 Score=65.25 Aligned_cols=65 Identities=18% Similarity=0.261 Sum_probs=55.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCC---CC-cccEEEe
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDA---IP-NADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~---~p-~~D~i~l 87 (90)
.+++||.+|+|.|.++.++++..+..+++.+|+ |.+++.+++ .+|++++.+|.++. .+ .||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 567999999999999999999777778999999 999998874 37899999998773 23 3999987
No 142
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.62 E-value=5.3e-08 Score=68.06 Aligned_cols=51 Identities=10% Similarity=0.257 Sum_probs=44.1
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD 77 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~ 77 (90)
.++||++||+|.++..+++... +++++|. +.+++.++++ ++++++.+|..+
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~--~v~~vE~~~~ai~~a~~N~~~~~~~~v~~~~~d~~~ 265 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFR--RVLATEISKPSVAAAQYNIAANGIDNVQIIRMSAEE 265 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCC--EEEEEECCHHHHHHHHHHHHHhCCCcEEEEECCHHH
Confidence 5799999999999999998864 7999999 9999888762 479999999865
No 143
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.59 E-value=2.1e-07 Score=66.43 Aligned_cols=67 Identities=13% Similarity=0.159 Sum_probs=54.3
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-C--CCc-ccEEEe
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-A--IPN-ADAVFM 87 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~--~p~-~D~i~l 87 (90)
..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .+++++.+|..+ + .++ ||.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSSIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCeEEEEECchhhhhhhhhccCCEEEE
Confidence 4566799999999999999999886 5689999999 9998887652 468899999865 2 233 899986
No 144
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=98.59 E-value=1e-07 Score=61.31 Aligned_cols=64 Identities=16% Similarity=0.181 Sum_probs=50.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C---Cc-ccEEEe
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I---PN-ADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~---p~-~D~i~l 87 (90)
...++||++||+|.++.+++++.. .+++++|. +.+++.+++ .++++++.+|.++. + .. +|+|++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga-~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGA-KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCC-CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 357899999999999999999865 37999999 888887765 25789999999652 2 12 677775
No 145
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.59 E-value=1.4e-07 Score=60.88 Aligned_cols=64 Identities=25% Similarity=0.509 Sum_probs=49.0
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCC----CC-c-ccEEEee
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDA----IP-N-ADAVFMK 88 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~----~p-~-~D~i~l~ 88 (90)
..+||||||.|.+...+++++|+..++++|+ ...+..+.+ ..++.++.+|...- ++ . .|-|++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~ 95 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKNVRFLRGDARELLRRLFPPGSVDRIYIN 95 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSSEEEEES-CTTHHHHHSTTTSEEEEEEE
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccceEEEEccHHHHHhhcccCCchheEEEe
Confidence 4899999999999999999999999999998 666555432 48999999998761 33 2 5666553
No 146
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.58 E-value=2.9e-07 Score=65.48 Aligned_cols=76 Identities=13% Similarity=0.195 Sum_probs=55.9
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCC-C
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDA-I 79 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~-~ 79 (90)
...++..++ ..+..+|||+|||+|..+..+++..+..+++++|+ +.+++.++++ .++.+..+|.... .
T Consensus 227 s~~~~~~L~---~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~ 303 (426)
T TIGR00563 227 AQWVATWLA---PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQ 303 (426)
T ss_pred HHHHHHHhC---CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccc
Confidence 344444455 45668999999999999999999988889999999 8888877652 1344466776542 1
Q ss_pred --C--cccEEEe
Q 034578 80 --P--NADAVFM 87 (90)
Q Consensus 80 --p--~~D~i~l 87 (90)
+ .+|.|++
T Consensus 304 ~~~~~~fD~Vll 315 (426)
T TIGR00563 304 WAENEQFDRILL 315 (426)
T ss_pred cccccccCEEEE
Confidence 2 2899985
No 147
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.58 E-value=3.5e-07 Score=61.15 Aligned_cols=75 Identities=20% Similarity=0.329 Sum_probs=62.0
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCCC-C
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFDA-I 79 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~~-~ 79 (90)
..|+.... ..+..+|+|.|.|||.++..|++. .|..+++.+|+ ++..+.|+++ +++++..+|+.+. .
T Consensus 84 ~~I~~~~g---i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~ 160 (256)
T COG2519 84 GYIVARLG---ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGID 160 (256)
T ss_pred HHHHHHcC---CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccccc
Confidence 34555555 677899999999999999999975 68899999999 8988888763 6699999999884 3
Q ss_pred Cc-ccEEEe
Q 034578 80 PN-ADAVFM 87 (90)
Q Consensus 80 p~-~D~i~l 87 (90)
+. +|++++
T Consensus 161 ~~~vDav~L 169 (256)
T COG2519 161 EEDVDAVFL 169 (256)
T ss_pred ccccCEEEE
Confidence 43 999986
No 148
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.56 E-value=3.9e-07 Score=60.27 Aligned_cols=77 Identities=16% Similarity=0.192 Sum_probs=49.0
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHh-CCCCCCeeE-EEecCCC--------C
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIAT-APTHEGVSH-VGGDMFD--------A 78 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~-a~~~~rv~~-~~~d~~~--------~ 78 (90)
..+++.++- .....++||+|||||.++..++++ +..+++++|. +.++.. .++++|+.. -..|+.. .
T Consensus 64 ~~~l~~~~~--~~~~~~vlDiG~gtG~~t~~l~~~-ga~~v~avD~~~~~l~~~l~~~~~v~~~~~~ni~~~~~~~~~~d 140 (228)
T TIGR00478 64 KEALEEFNI--DVKNKIVLDVGSSTGGFTDCALQK-GAKEVYGVDVGYNQLAEKLRQDERVKVLERTNIRYVTPADIFPD 140 (228)
T ss_pred HHHHHhcCC--CCCCCEEEEcccCCCHHHHHHHHc-CCCEEEEEeCCHHHHHHHHhcCCCeeEeecCCcccCCHhHcCCC
Confidence 344454441 134568999999999999999986 4568999999 755553 455555432 2223321 2
Q ss_pred CCcccEEEeec
Q 034578 79 IPNADAVFMKV 89 (90)
Q Consensus 79 ~p~~D~i~l~~ 89 (90)
++.+|+.+.+.
T Consensus 141 ~~~~DvsfiS~ 151 (228)
T TIGR00478 141 FATFDVSFISL 151 (228)
T ss_pred ceeeeEEEeeh
Confidence 23478888763
No 149
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.56 E-value=3.2e-07 Score=65.43 Aligned_cols=67 Identities=9% Similarity=0.055 Sum_probs=53.9
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-C----C-C-cccEE
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-A----I-P-NADAV 85 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~----~-p-~~D~i 85 (90)
..+..+|||+|||+|..+..+++.. +..+++++|+ +.+++.++++ .+++++.+|..+ + . + .+|.|
T Consensus 250 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 250 PQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKSIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCeEEEEeCChhhcccccccccccCCEE
Confidence 4456899999999999999999985 4579999999 8888877652 468999999876 2 1 2 38999
Q ss_pred Ee
Q 034578 86 FM 87 (90)
Q Consensus 86 ~l 87 (90)
++
T Consensus 330 l~ 331 (434)
T PRK14901 330 LL 331 (434)
T ss_pred EE
Confidence 86
No 150
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.55 E-value=1.5e-07 Score=70.66 Aligned_cols=65 Identities=12% Similarity=0.118 Sum_probs=53.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------CCeeEEEecCCCC---CC-cccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------EGVSHVGGDMFDA---IP-NADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~d~~~~---~p-~~D~i~l~ 88 (90)
+..+|||+|||+|.+++.+++. ...+++++|+ +.+++.++++ ++++++.+|+++. .+ .||+|++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~-Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilD 615 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALG-GAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFID 615 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEEC
Confidence 3579999999999999999986 3346999999 9999988762 4799999998773 23 39999873
No 151
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=98.54 E-value=2.1e-07 Score=60.35 Aligned_cols=65 Identities=20% Similarity=0.107 Sum_probs=50.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----C-CeeEEEecCCC-C--CCc-ccEEEeec
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----E-GVSHVGGDMFD-A--IPN-ADAVFMKV 89 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~-rv~~~~~d~~~-~--~p~-~D~i~l~~ 89 (90)
+..+|||+|||+|.++..+++.. .+++++|+ +.+++.++++ . ++++...|+.+ + .+. +|+|++.+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~--~~v~~iD~s~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~D~i~~~~ 120 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLG--ANVTGIDASEENIEVAKLHAKKDPLLKIEYRCTSVEDLAEKGAKSFDVVTCME 120 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcC--CeEEEEeCCHHHHHHHHHHHHHcCCCceEEEeCCHHHhhcCCCCCccEEEehh
Confidence 46799999999999999998864 45999999 8888777641 2 58888888765 2 223 99998764
No 152
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.53 E-value=2.8e-07 Score=58.75 Aligned_cols=84 Identities=18% Similarity=0.167 Sum_probs=62.3
Q ss_pred CcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCe---------EEEeeh-HHHHHhCCC-------
Q 034578 2 ACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIK---------GINFDL-QHVIATAPT------- 64 (90)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~---------~~~~D~-p~~~~~a~~------- 64 (90)
+.+...++..++.... +.+...|+|-=||+|.++++.+...++.. +++.|+ +.+++.+++
T Consensus 10 a~L~~~lA~~ll~la~---~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~ 86 (179)
T PF01170_consen 10 APLRPTLAAALLNLAG---WRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGV 86 (179)
T ss_dssp TSS-HHHHHHHHHHTT-----TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-
T ss_pred CCCCHHHHHHHHHHhC---CCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhccc
Confidence 4556778888888777 56678999999999999999988887776 999999 999988775
Q ss_pred CCCeeEEEecCCC-CC-Cc-ccEEEee
Q 034578 65 HEGVSHVGGDMFD-AI-PN-ADAVFMK 88 (90)
Q Consensus 65 ~~rv~~~~~d~~~-~~-p~-~D~i~l~ 88 (90)
...+.+...|+.+ ++ +. +|.|+.+
T Consensus 87 ~~~i~~~~~D~~~l~~~~~~~d~Ivtn 113 (179)
T PF01170_consen 87 EDYIDFIQWDARELPLPDGSVDAIVTN 113 (179)
T ss_dssp CGGEEEEE--GGGGGGTTSBSCEEEEE
T ss_pred CCceEEEecchhhcccccCCCCEEEEC
Confidence 2568999999987 53 33 7988864
No 153
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.53 E-value=2.7e-07 Score=61.81 Aligned_cols=68 Identities=15% Similarity=0.308 Sum_probs=56.1
Q ss_pred hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC
Q 034578 5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD 77 (90)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~ 77 (90)
+..+++.+++.++ ..+...|+|+|.|+|.++..|++.. .+++++|. +...+..++ .+|++++.+|+++
T Consensus 15 ~~~~~~~Iv~~~~---~~~~~~VlEiGpG~G~lT~~L~~~~--~~v~~vE~d~~~~~~L~~~~~~~~~~~vi~~D~l~ 87 (262)
T PF00398_consen 15 DPNIADKIVDALD---LSEGDTVLEIGPGPGALTRELLKRG--KRVIAVEIDPDLAKHLKERFASNPNVEVINGDFLK 87 (262)
T ss_dssp HHHHHHHHHHHHT---CGTTSEEEEESSTTSCCHHHHHHHS--SEEEEEESSHHHHHHHHHHCTTCSSEEEEES-TTT
T ss_pred CHHHHHHHHHhcC---CCCCCEEEEeCCCCccchhhHhccc--CcceeecCcHhHHHHHHHHhhhcccceeeecchhc
Confidence 4566788888887 5677899999999999999999987 77888888 776665443 5899999999998
No 154
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=98.51 E-value=1.7e-07 Score=66.33 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=51.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------CCeeEEEecCCCCC------C-cccEEE
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------EGVSHVGGDMFDAI------P-NADAVF 86 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~d~~~~~------p-~~D~i~ 86 (90)
+..+|||+|||+|.++...+.. ...+++++|+ +.+++.++++ ++++++.+|+++.+ . .||+|+
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~-ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVi 298 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMG-GCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIV 298 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhC-CCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEE
Confidence 4578999999999999877653 4558999999 9999888761 37899999998732 2 389999
Q ss_pred ee
Q 034578 87 MK 88 (90)
Q Consensus 87 l~ 88 (90)
+.
T Consensus 299 lD 300 (396)
T PRK15128 299 MD 300 (396)
T ss_pred EC
Confidence 75
No 155
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.50 E-value=6e-07 Score=61.05 Aligned_cols=66 Identities=23% Similarity=0.344 Sum_probs=57.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCC---CCCc-ccEEEe
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFD---AIPN-ADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~---~~p~-~D~i~l 87 (90)
.+++||=||+|.|..++++++..+.-+++.+|+ |.+++.+++ .+|++++.+|-.+ ..+. +|+|++
T Consensus 76 ~pk~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~ 155 (282)
T COG0421 76 NPKRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIV 155 (282)
T ss_pred CCCeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEE
Confidence 346999999999999999999999899999999 999999876 2899999999887 3444 999987
Q ss_pred e
Q 034578 88 K 88 (90)
Q Consensus 88 ~ 88 (90)
-
T Consensus 156 D 156 (282)
T COG0421 156 D 156 (282)
T ss_pred c
Confidence 3
No 156
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.50 E-value=5.4e-07 Score=60.49 Aligned_cols=67 Identities=12% Similarity=0.090 Sum_probs=52.9
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-C--CCcccEEEe
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-A--IPNADAVFM 87 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~--~p~~D~i~l 87 (90)
..+..+|||+|||+|..+..+++..+ ..+++++|+ +.+++.++++ .+++++.+|... + .+.+|.|++
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~v~~~~~D~~~~~~~~~~fD~Vl~ 146 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLNVAVTNFDGRVFGAAVPKFDAILL 146 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCcEEEecCCHHHhhhhccCCCEEEE
Confidence 44567999999999999999998864 468999999 9988877652 468888888654 2 234899986
No 157
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=98.50 E-value=7.3e-07 Score=58.94 Aligned_cols=63 Identities=13% Similarity=0.146 Sum_probs=51.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------------------CCCeeEEEecCCC-CC---
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------------------HEGVSHVGGDMFD-AI--- 79 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------------~~rv~~~~~d~~~-~~--- 79 (90)
+..+||+.|||.|.-+..|+++ +.+++++|+ |.+++.+.+ ..++++..+|||+ +.
T Consensus 43 ~~~rvLvPgCGkg~D~~~LA~~--G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~ 120 (226)
T PRK13256 43 DSSVCLIPMCGCSIDMLFFLSK--GVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNLPKIAN 120 (226)
T ss_pred CCCeEEEeCCCChHHHHHHHhC--CCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCCCcccc
Confidence 4579999999999999999997 677999999 999888521 3579999999998 32
Q ss_pred --CcccEEEe
Q 034578 80 --PNADAVFM 87 (90)
Q Consensus 80 --p~~D~i~l 87 (90)
..+|+|+=
T Consensus 121 ~~~~fD~VyD 130 (226)
T PRK13256 121 NLPVFDIWYD 130 (226)
T ss_pred ccCCcCeeee
Confidence 13788763
No 158
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.49 E-value=2.8e-07 Score=63.89 Aligned_cols=67 Identities=19% Similarity=0.262 Sum_probs=54.0
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-CCC-c-ccEEEeec
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-AIP-N-ADAVFMKV 89 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~~p-~-~D~i~l~~ 89 (90)
-+...|||||||||.++...+++. ..++.++|-.++.+.|++ .+.+++++|...+ .+| + .|+|+.-|
T Consensus 59 f~dK~VlDVGcGtGILS~F~akAG-A~~V~aVe~S~ia~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEW 135 (346)
T KOG1499|consen 59 FKDKTVLDVGCGTGILSMFAAKAG-ARKVYAVEASSIADFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEW 135 (346)
T ss_pred cCCCEEEEcCCCccHHHHHHHHhC-cceEEEEechHHHHHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehh
Confidence 356899999999999999999987 678999997666666654 3669999999887 566 3 89998654
No 159
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=98.49 E-value=5.4e-07 Score=62.91 Aligned_cols=74 Identities=18% Similarity=0.299 Sum_probs=59.1
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC-------CCCeeEEEecCCC-CCCc
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT-------HEGVSHVGGDMFD-AIPN 81 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~-------~~rv~~~~~d~~~-~~p~ 81 (90)
.++++...+ | +.+.|||||||+|.++.-.+++. ..++.+++-.+|.+.|++ .+|+.+++|-+.+ .+|+
T Consensus 167 ~Ail~N~sD--F-~~kiVlDVGaGSGILS~FAaqAG-A~~vYAvEAS~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPE 242 (517)
T KOG1500|consen 167 RAILENHSD--F-QDKIVLDVGAGSGILSFFAAQAG-AKKVYAVEASEMAQYARKLVASNNLADRITVIPGKIEDIELPE 242 (517)
T ss_pred HHHHhcccc--c-CCcEEEEecCCccHHHHHHHHhC-cceEEEEehhHHHHHHHHHHhcCCccceEEEccCccccccCch
Confidence 455555543 5 35789999999999998877764 467899998888888875 4899999999988 8897
Q ss_pred -ccEEEe
Q 034578 82 -ADAVFM 87 (90)
Q Consensus 82 -~D~i~l 87 (90)
+|+++.
T Consensus 243 k~DviIS 249 (517)
T KOG1500|consen 243 KVDVIIS 249 (517)
T ss_pred hccEEEe
Confidence 999874
No 160
>PLN02476 O-methyltransferase
Probab=98.46 E-value=4.3e-07 Score=61.65 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=55.4
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C------Ccc
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I------PNA 82 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~------p~~ 82 (90)
..++++||++|+++|..++.+++..| +.+++.+|. |+..+.|++ .++++++.||..+. + ..|
T Consensus 116 ~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~F 195 (278)
T PLN02476 116 ILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSY 195 (278)
T ss_pred hcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCC
Confidence 34678999999999999999999875 678999999 888888875 36899999998762 2 238
Q ss_pred cEEEe
Q 034578 83 DAVFM 87 (90)
Q Consensus 83 D~i~l 87 (90)
|+|++
T Consensus 196 D~VFI 200 (278)
T PLN02476 196 DFAFV 200 (278)
T ss_pred CEEEE
Confidence 99886
No 161
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.46 E-value=2.4e-06 Score=57.48 Aligned_cols=70 Identities=10% Similarity=0.296 Sum_probs=54.6
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----CCCeeEEEecCCC-CCC
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----HEGVSHVGGDMFD-AIP 80 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----~~rv~~~~~d~~~-~~p 80 (90)
.+.+.+++..+ ..+..+|++||+|.|.++..|+++... ++++++ +.+++.-++ .++++++.+|+++ +++
T Consensus 17 ~v~~kIv~~a~---~~~~d~VlEIGpG~GaLT~~Ll~~~~~--v~aiEiD~~l~~~L~~~~~~~~n~~vi~~DaLk~d~~ 91 (259)
T COG0030 17 NVIDKIVEAAN---ISPGDNVLEIGPGLGALTEPLLERAAR--VTAIEIDRRLAEVLKERFAPYDNLTVINGDALKFDFP 91 (259)
T ss_pred HHHHHHHHhcC---CCCCCeEEEECCCCCHHHHHHHhhcCe--EEEEEeCHHHHHHHHHhcccccceEEEeCchhcCcch
Confidence 45677888777 555789999999999999999999765 566665 666555443 5889999999998 666
Q ss_pred c
Q 034578 81 N 81 (90)
Q Consensus 81 ~ 81 (90)
.
T Consensus 92 ~ 92 (259)
T COG0030 92 S 92 (259)
T ss_pred h
Confidence 3
No 162
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=98.46 E-value=4.7e-07 Score=59.49 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=50.8
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------------------CCCeeEEEecCCC-CCC
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------------------HEGVSHVGGDMFD-AIP 80 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------------------~~rv~~~~~d~~~-~~p 80 (90)
.....++|+.|||.|.-+..|+++ +.+++++|+ |.+++.+.+ .++++++.+|||+ +..
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~--G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~ 112 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQ--GHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFELPPE 112 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHT--TEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTGGGS
T ss_pred CCCCCeEEEeCCCChHHHHHHHHC--CCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccCChh
Confidence 445679999999999999999997 578999999 999987611 2578999999999 221
Q ss_pred ---cccEEE
Q 034578 81 ---NADAVF 86 (90)
Q Consensus 81 ---~~D~i~ 86 (90)
.+|+|+
T Consensus 113 ~~g~fD~iy 121 (218)
T PF05724_consen 113 DVGKFDLIY 121 (218)
T ss_dssp CHHSEEEEE
T ss_pred hcCCceEEE
Confidence 289886
No 163
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.45 E-value=1.4e-06 Score=58.32 Aligned_cols=76 Identities=14% Similarity=0.312 Sum_probs=56.3
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-C
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-A 78 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~ 78 (90)
+..|+..++ ..+..+|++.|.|+|.++..|++. .|..++.-+|. ++-.+.|++ .+++++...|+.+ .
T Consensus 29 ~~~I~~~l~---i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g 105 (247)
T PF08704_consen 29 ISYILMRLD---IRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEG 105 (247)
T ss_dssp HHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG-
T ss_pred HHHHHHHcC---CCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceeccc
Confidence 345666666 778899999999999999999987 69999999999 888888875 3689999999965 3
Q ss_pred C----C-cccEEEe
Q 034578 79 I----P-NADAVFM 87 (90)
Q Consensus 79 ~----p-~~D~i~l 87 (90)
+ . .+|.|+|
T Consensus 106 ~~~~~~~~~DavfL 119 (247)
T PF08704_consen 106 FDEELESDFDAVFL 119 (247)
T ss_dssp -STT-TTSEEEEEE
T ss_pred ccccccCcccEEEE
Confidence 3 2 2899987
No 164
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.44 E-value=1.3e-07 Score=61.55 Aligned_cols=67 Identities=16% Similarity=0.291 Sum_probs=54.3
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C------Cccc
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I------PNAD 83 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~------p~~D 83 (90)
.++++||+||+++|+-+..+++..| +.+++.+|. |+..+.|++ .+|++++.||..+. + ..||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 4578999999999999999999987 689999999 888888765 37999999998752 1 2389
Q ss_pred EEEee
Q 034578 84 AVFMK 88 (90)
Q Consensus 84 ~i~l~ 88 (90)
+|++-
T Consensus 124 ~VFiD 128 (205)
T PF01596_consen 124 FVFID 128 (205)
T ss_dssp EEEEE
T ss_pred EEEEc
Confidence 99873
No 165
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=98.44 E-value=6.6e-07 Score=59.78 Aligned_cols=44 Identities=18% Similarity=0.324 Sum_probs=39.5
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT 64 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 64 (90)
+..+..+|||||-+|.++..+++.|-...++++|+ |..++.|++
T Consensus 56 ~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark 100 (288)
T KOG2899|consen 56 WFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARK 100 (288)
T ss_pred ccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHH
Confidence 44567899999999999999999998888999999 998988875
No 166
>PRK00536 speE spermidine synthase; Provisional
Probab=98.43 E-value=1.5e-06 Score=58.64 Aligned_cols=62 Identities=10% Similarity=0.137 Sum_probs=50.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCCCC-CcccEEEe
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFDAI-PNADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~~~-p~~D~i~l 87 (90)
.+++||=+|||.|..++++++. |. +++.+|+ +.+++.+++ ++|++++.. +.+.- ..||+|+.
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh-~~-~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~~~~~~fDVIIv 145 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKY-DT-HVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLDLDIKKYDLIIC 145 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCc-CC-eeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhhccCCcCCEEEE
Confidence 5789999999999999999996 55 9999999 999998876 488998862 32222 34999986
No 167
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.42 E-value=8.1e-07 Score=63.80 Aligned_cols=64 Identities=20% Similarity=0.353 Sum_probs=47.7
Q ss_pred CCeEEEecCCchHHHHHHHHHC----CCCeEEEeeh-HHHHHhCC----C---CCCeeEEEecCCC-CCCc-ccEEEe
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSY----PHIKGINFDL-QHVIATAP----T---HEGVSHVGGDMFD-AIPN-ADAVFM 87 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-p~~~~~a~----~---~~rv~~~~~d~~~-~~p~-~D~i~l 87 (90)
...|+|||||+|-++...+++. -..++.+++. |.++...+ + .++|+++.+|+.+ .+|+ +|+|+-
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVS 264 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVS 264 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEE
Confidence 4679999999999988777654 4678999998 76554321 1 4899999999988 6675 999974
No 168
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.35 E-value=1.1e-06 Score=58.59 Aligned_cols=65 Identities=22% Similarity=0.292 Sum_probs=53.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC----------CCCeeEEEecCCC---C-CC-cccEEE
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT----------HEGVSHVGGDMFD---A-IP-NADAVF 86 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~---~-~p-~~D~i~ 86 (90)
.+++||=||+|.|..+.++++..+..+++.+|+ |.+++.+++ .+|++++.+|... . .. .||+|+
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvIi 155 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVII 155 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEEE
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEEE
Confidence 578999999999999999998776789999999 999998875 3799999999765 2 33 499998
Q ss_pred e
Q 034578 87 M 87 (90)
Q Consensus 87 l 87 (90)
+
T Consensus 156 ~ 156 (246)
T PF01564_consen 156 V 156 (246)
T ss_dssp E
T ss_pred E
Confidence 6
No 169
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=98.32 E-value=2.5e-06 Score=54.09 Aligned_cols=69 Identities=19% Similarity=0.197 Sum_probs=44.6
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC---------CCCeeEEEecCCCC-----C-C-cccE
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT---------HEGVSHVGGDMFDA-----I-P-NADA 84 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~---------~~rv~~~~~d~~~~-----~-p-~~D~ 84 (90)
..+..+||++|||+|..++.+++..+..+++.-|.+++++..+. ..++++...||-++ + + .+|+
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D~ 122 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNEVLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFDV 122 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S-HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBSE
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccchhhHHHHHHHHhccccccccccCcEEEecCcccccccccccCCE
Confidence 34568999999999999999999878889999998557665443 26788888888662 2 2 3899
Q ss_pred EEeec
Q 034578 85 VFMKV 89 (90)
Q Consensus 85 i~l~~ 89 (90)
|+.+-
T Consensus 123 IlasD 127 (173)
T PF10294_consen 123 ILASD 127 (173)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 88763
No 170
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.31 E-value=3.3e-07 Score=57.83 Aligned_cols=62 Identities=19% Similarity=0.443 Sum_probs=46.8
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---CC--c-ccEEEee
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---IP--N-ADAVFMK 88 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~p--~-~D~i~l~ 88 (90)
..|+|+.||.|.-++.+++.++ +++++|+ |.-++.++. .+|+.|+.+|+++. +. . +|+|+++
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~--~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlS 76 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFD--RVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLS 76 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT---EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE-
T ss_pred CEEEEeccCcCHHHHHHHHhCC--eEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEEC
Confidence 3699999999999999999975 4888898 888887765 36899999999982 22 2 6999986
No 171
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.31 E-value=9.4e-07 Score=62.31 Aligned_cols=65 Identities=14% Similarity=0.021 Sum_probs=52.4
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCC---CcccEEEee
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAI---PNADAVFMK 88 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~---p~~D~i~l~ 88 (90)
..++||++||+|.+++.++++.+..+++++|+ |.+++.++++ +++++..+|..+.+ ..+|+|++.
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~~~~fD~V~lD 132 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHEERKFDVVDID 132 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhhcCCCCEEEEC
Confidence 35899999999999999999887678999999 9999988762 45678888875522 238998863
No 172
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.30 E-value=3.2e-06 Score=51.24 Aligned_cols=52 Identities=15% Similarity=0.183 Sum_probs=42.7
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD 77 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~ 77 (90)
+++|+|||.|.++..+++.+|..+++++|. |.+.+.++++ ++++++...+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPNVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEEeeeeC
Confidence 489999999999999999999999999998 8887766541 457777766654
No 173
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.30 E-value=4.4e-06 Score=62.83 Aligned_cols=84 Identities=20% Similarity=0.107 Sum_probs=63.8
Q ss_pred cchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-------------------------------------
Q 034578 3 CTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY------------------------------------- 45 (90)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~------------------------------------- 45 (90)
.+.+.++..++..-.| ..+...++|-.||+|.++++.+...
T Consensus 172 pl~etlAaa~l~~a~w--~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~ 249 (702)
T PRK11783 172 PLKENLAAAILLRSGW--PQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERAR 249 (702)
T ss_pred CCcHHHHHHHHHHcCC--CCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHh
Confidence 4556778888877664 2556899999999999999987631
Q ss_pred -----CCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC-CCC----cccEEEee
Q 034578 46 -----PHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD-AIP----NADAVFMK 88 (90)
Q Consensus 46 -----p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~-~~p----~~D~i~l~ 88 (90)
+..+++++|+ |.+++.|+++ +++++..+|+.+ +.+ .+|+|+.+
T Consensus 250 ~~~~~~~~~i~G~Did~~av~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtN 310 (702)
T PRK11783 250 AGLAELPSKFYGSDIDPRVIQAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISN 310 (702)
T ss_pred hcccccCceEEEEECCHHHHHHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEEC
Confidence 1246899999 9999988762 578999999987 322 28988765
No 174
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=98.26 E-value=1.8e-06 Score=55.96 Aligned_cols=68 Identities=15% Similarity=0.226 Sum_probs=45.4
Q ss_pred CCCeEEEecCCchH----HHHHHHHH----CC-CCeEEEeeh-HHHHHhCCC----------------------------
Q 034578 23 NIRSMVDVGGGTGT----VLAEIVKS----YP-HIKGINFDL-QHVIATAPT---------------------------- 64 (90)
Q Consensus 23 ~~~~vlDvG~G~G~----~~~~l~~~----~p-~~~~~~~D~-p~~~~~a~~---------------------------- 64 (90)
+.-+|+..||+||. ++..+.+. .+ ..++++.|+ +.+++.|++
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 45789999999998 34444441 12 478999999 999998864
Q ss_pred ------CCCeeEEEecCCC-CCC--cccEEEeecC
Q 034578 65 ------HEGVSHVGGDMFD-AIP--NADAVFMKVA 90 (90)
Q Consensus 65 ------~~rv~~~~~d~~~-~~p--~~D~i~l~~v 90 (90)
..+|+|..+|+.+ +.+ .+|+|+++||
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNV 145 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNV 145 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SS
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCE
Confidence 1679999999999 322 3999999986
No 175
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=98.24 E-value=4e-06 Score=57.59 Aligned_cols=64 Identities=16% Similarity=0.153 Sum_probs=41.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC------C-CCCeeEEEecCCCCCC---cccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP------T-HEGVSHVGGDMFDAIP---NADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~------~-~~rv~~~~~d~~~~~p---~~D~i~l~ 88 (90)
..++|||||||+|.++-+++++.| ..++++|- +.-.-+.+ . ..++.+.+-.+ +.+| .||+|++-
T Consensus 115 ~gk~VLDIGC~nGY~~frM~~~GA-~~ViGiDP~~lf~~QF~~i~~~lg~~~~~~~lplgv-E~Lp~~~~FDtVF~M 189 (315)
T PF08003_consen 115 KGKRVLDIGCNNGYYSFRMLGRGA-KSVIGIDPSPLFYLQFEAIKHFLGQDPPVFELPLGV-EDLPNLGAFDTVFSM 189 (315)
T ss_pred CCCEEEEecCCCcHHHHHHhhcCC-CEEEEECCChHHHHHHHHHHHHhCCCccEEEcCcch-hhccccCCcCEEEEe
Confidence 457999999999999999999865 35899995 33222221 1 23344443223 3333 39999874
No 176
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=2.9e-06 Score=52.97 Aligned_cols=63 Identities=17% Similarity=0.286 Sum_probs=47.9
Q ss_pred CCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCCCC--c-ccEEEee
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDAIP--N-ADAVFMK 88 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~~p--~-~D~i~l~ 88 (90)
...+.|+|||.|.++.+ -.+|. -.++++|+ |++++.+.++ -++.+++.|+.+..+ . +|..+++
T Consensus 49 gkkl~DLgcgcGmLs~a--~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvqidlLqcdildle~~~g~fDtaviN 121 (185)
T KOG3420|consen 49 GKKLKDLGCGCGMLSIA--FSMPKNESVLGFDIDPEALEIFTRNAEEFEVQIDLLQCDILDLELKGGIFDTAVIN 121 (185)
T ss_pred CcchhhhcCchhhhHHH--hhcCCCceEEeeecCHHHHHHHhhchHHhhhhhheeeeeccchhccCCeEeeEEec
Confidence 46899999999999944 34444 45899999 9999988764 457888888887433 2 7887765
No 177
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=98.23 E-value=6.5e-07 Score=59.52 Aligned_cols=42 Identities=24% Similarity=0.346 Sum_probs=36.0
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH 65 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~ 65 (90)
....++||+|||||..+..+.... .+.+++|+ ..|++.|.++
T Consensus 124 g~F~~~lDLGCGTGL~G~~lR~~a--~~ltGvDiS~nMl~kA~eK 166 (287)
T COG4976 124 GPFRRMLDLGCGTGLTGEALRDMA--DRLTGVDISENMLAKAHEK 166 (287)
T ss_pred CccceeeecccCcCcccHhHHHHH--hhccCCchhHHHHHHHHhc
Confidence 347899999999999999998874 44689999 9999999874
No 178
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.21 E-value=2.8e-06 Score=52.09 Aligned_cols=55 Identities=24% Similarity=0.517 Sum_probs=42.9
Q ss_pred CCCCeEEEecCCchHHHHHHHH-----HCCCCeEEEeeh-HHHHHhCCC---------CCCeeEEEecCCC
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVK-----SYPHIKGINFDL-QHVIATAPT---------HEGVSHVGGDMFD 77 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~-----~~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~d~~~ 77 (90)
.+..+|+|+|||.|+++..++. . |+.+++++|. +..++.+++ ..+.++..+++.+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~-~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSS-PNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcC-CCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 5678999999999999999999 4 8899999998 776665543 2456666666543
No 179
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=98.19 E-value=7.4e-06 Score=53.94 Aligned_cols=67 Identities=15% Similarity=0.272 Sum_probs=56.6
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEE-ecCCC---C-C-CcccEE
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVG-GDMFD---A-I-PNADAV 85 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~-~d~~~---~-~-p~~D~i 85 (90)
..+++++|+||++.|.-++.++...| +.+.+.+|+ |+..+.|++ .++++++. +|..+ . . +.||+|
T Consensus 57 ~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDli 136 (219)
T COG4122 57 LSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLV 136 (219)
T ss_pred hcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEE
Confidence 45789999999999999999999999 889999999 999999886 36788888 57766 2 2 349999
Q ss_pred Ee
Q 034578 86 FM 87 (90)
Q Consensus 86 ~l 87 (90)
++
T Consensus 137 FI 138 (219)
T COG4122 137 FI 138 (219)
T ss_pred EE
Confidence 86
No 180
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=98.18 E-value=3.9e-06 Score=55.55 Aligned_cols=53 Identities=21% Similarity=0.359 Sum_probs=43.7
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----C-CCeeEEEecCCC
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----H-EGVSHVGGDMFD 77 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~-~rv~~~~~d~~~ 77 (90)
..+|+||||.|.+...+++++|+..++++|+ ...+..+.+ . .++.++.+|..+
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~Nlri~~~DA~~ 109 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKNLRLLCGDAVE 109 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCcEEEEcCCHHH
Confidence 4799999999999999999999999999998 555444422 2 389999988765
No 181
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=98.14 E-value=4.2e-06 Score=54.39 Aligned_cols=68 Identities=19% Similarity=0.257 Sum_probs=51.0
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCC-c-ccEEEeec
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIP-N-ADAVFMKV 89 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p-~-~D~i~l~~ 89 (90)
.+..+|+|+-||-|.+++.+++..+..++++.|+ |++++..++ .+++..+.+|..+-++ . +|-|+|+.
T Consensus 100 ~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~drvim~l 177 (200)
T PF02475_consen 100 KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKFDRVIMNL 177 (200)
T ss_dssp -TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-EEEEEE--
T ss_pred CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCccccCEEEECC
Confidence 3578999999999999999999888889999999 998887654 3789999999877433 3 89998864
No 182
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.12 E-value=1.7e-05 Score=55.36 Aligned_cols=64 Identities=19% Similarity=0.181 Sum_probs=51.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCCCC--c-ccEEEe
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP--N-ADAVFM 87 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~~p--~-~D~i~l 87 (90)
.+..++||+||++|.++..++++ +.+++++|..++-......++|++..+|-+...| . +|++++
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~r--G~~V~AVD~g~l~~~L~~~~~V~h~~~d~fr~~p~~~~vDwvVc 276 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRR--GMFVTAVDNGPMAQSLMDTGQVEHLRADGFKFRPPRKNVDWLVC 276 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHc--CCEEEEEechhcCHhhhCCCCEEEEeccCcccCCCCCCCCEEEE
Confidence 45679999999999999999998 5699999975555555668999999999988443 2 788765
No 183
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=8e-06 Score=53.58 Aligned_cols=78 Identities=17% Similarity=0.149 Sum_probs=57.2
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCC----------------CCCeeE
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPT----------------HEGVSH 70 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~----------------~~rv~~ 70 (90)
..+++.++. .+.+..+.||+|+|||.++..+++-. +.....++|. |+.++.+++ ..++++
T Consensus 70 a~~le~L~~-~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~i 148 (237)
T KOG1661|consen 70 ATALEYLDD-HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSI 148 (237)
T ss_pred HHHHHHHHH-hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEE
Confidence 344555542 24567899999999999999888553 3444589998 999988765 267899
Q ss_pred EEecCCCCCC---cccEEEee
Q 034578 71 VGGDMFDAIP---NADAVFMK 88 (90)
Q Consensus 71 ~~~d~~~~~p---~~D~i~l~ 88 (90)
+.||-.+-.+ +||.|...
T Consensus 149 vvGDgr~g~~e~a~YDaIhvG 169 (237)
T KOG1661|consen 149 VVGDGRKGYAEQAPYDAIHVG 169 (237)
T ss_pred EeCCccccCCccCCcceEEEc
Confidence 9999887333 38998764
No 184
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.10 E-value=1e-05 Score=54.70 Aligned_cols=68 Identities=21% Similarity=0.299 Sum_probs=46.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCC-eEEEeeh-HHHHHhCCC----CC--CeeEEEecCCC---CCCcccEEEeecC
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHI-KGINFDL-QHVIATAPT----HE--GVSHVGGDMFD---AIPNADAVFMKVA 90 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~----~~--rv~~~~~d~~~---~~p~~D~i~l~~v 90 (90)
.+.+|||+|+|+|.-.-++...+|.. +++.+|. +.|.+.++. .. +......++.. +++..|+|+++|+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 46799999999999998888888854 5889998 888887654 11 11111122221 3444799999874
No 185
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=98.10 E-value=2.5e-05 Score=52.86 Aligned_cols=68 Identities=15% Similarity=0.211 Sum_probs=55.5
Q ss_pred CCCeEEEecCCchH----HHHHHHHHCC-----CCeEEEeeh-HHHHHhCCC----------------------------
Q 034578 23 NIRSMVDVGGGTGT----VLAEIVKSYP-----HIKGINFDL-QHVIATAPT---------------------------- 64 (90)
Q Consensus 23 ~~~~vlDvG~G~G~----~~~~l~~~~p-----~~~~~~~D~-p~~~~~a~~---------------------------- 64 (90)
+.-+|.-.||+||. ++..+.+.+| ..++++.|+ ..+++.|+.
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~ 175 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGS 175 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCc
Confidence 46789999999997 6667777776 478999999 899998864
Q ss_pred -------CCCeeEEEecCCC-C-CCc-ccEEEeecC
Q 034578 65 -------HEGVSHVGGDMFD-A-IPN-ADAVFMKVA 90 (90)
Q Consensus 65 -------~~rv~~~~~d~~~-~-~p~-~D~i~l~~v 90 (90)
...|.|..+|.++ + .+. +|+|++++|
T Consensus 176 y~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNV 211 (268)
T COG1352 176 YRVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNV 211 (268)
T ss_pred EEEChHHhcccEEeecCCCCCccccCCCCEEEEcce
Confidence 1468999999998 3 444 999999986
No 186
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=98.07 E-value=1.1e-05 Score=53.94 Aligned_cols=66 Identities=15% Similarity=0.194 Sum_probs=54.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C-------Ccc
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I-------PNA 82 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~-------p~~ 82 (90)
.+++++|+||+++|.-++.+++.. |+.+++.+|. |+..+.|++ .++++++.||..+- + ..|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 357899999999999999999886 4789999999 887777765 37899999998762 1 248
Q ss_pred cEEEe
Q 034578 83 DAVFM 87 (90)
Q Consensus 83 D~i~l 87 (90)
|+|++
T Consensus 158 D~iFi 162 (247)
T PLN02589 158 DFIFV 162 (247)
T ss_pred cEEEe
Confidence 99986
No 187
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=98.06 E-value=2.1e-05 Score=50.05 Aligned_cols=82 Identities=18% Similarity=0.261 Sum_probs=65.0
Q ss_pred chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC-CCCeeEEEecCCC-C-
Q 034578 4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT-HEGVSHVGGDMFD-A- 78 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-~~rv~~~~~d~~~-~- 78 (90)
.|..+++++++.++ +++...|+++|-|||.+..+++++. +.-..+.++. |+-+..-.+ .+.++++.||.+. .
T Consensus 32 sSs~lA~~M~s~I~---pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p~~~ii~gda~~l~~ 108 (194)
T COG3963 32 SSSILARKMASVID---PESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYPGVNIINGDAFDLRT 108 (194)
T ss_pred CcHHHHHHHHhccC---cccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCCCccccccchhhHHH
Confidence 46678899999998 6778899999999999999999984 6777899998 876665544 5677899999886 2
Q ss_pred -C-----CcccEEEee
Q 034578 79 -I-----PNADAVFMK 88 (90)
Q Consensus 79 -~-----p~~D~i~l~ 88 (90)
+ +.+|.++..
T Consensus 109 ~l~e~~gq~~D~viS~ 124 (194)
T COG3963 109 TLGEHKGQFFDSVISG 124 (194)
T ss_pred HHhhcCCCeeeeEEec
Confidence 2 228988753
No 188
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.05 E-value=9.4e-06 Score=52.94 Aligned_cols=62 Identities=18% Similarity=0.292 Sum_probs=48.9
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCCc---ccEEEee
Q 034578 27 MVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIPN---ADAVFMK 88 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p~---~D~i~l~ 88 (90)
|.||||-.|.++..|+++...-++++.|+ |..++.|++ .+++++..+|-++.++. .|+|++.
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIA 73 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIA 73 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEe
Confidence 68999999999999999998889999999 888888765 47899999998886643 7788764
No 189
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.03 E-value=1.5e-05 Score=56.31 Aligned_cols=65 Identities=32% Similarity=0.492 Sum_probs=54.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------------CCCeeEEEecCCCCCC---c-c
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------------HEGVSHVGGDMFDAIP---N-A 82 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------------~~rv~~~~~d~~~~~p---~-~ 82 (90)
.+.+++|-+|||.|.-++++++ +| --+++.+|+ |.|++.++. ++|++.+..|.++.+. + |
T Consensus 288 ~~a~~vLvlGGGDGLAlRellk-yP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~f 366 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLK-YPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMF 366 (508)
T ss_pred cccceEEEEcCCchHHHHHHHh-CCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccc
Confidence 4568999999999999999887 78 457999999 999999873 3899999999988542 2 8
Q ss_pred cEEEe
Q 034578 83 DAVFM 87 (90)
Q Consensus 83 D~i~l 87 (90)
|.++.
T Consensus 367 D~vIV 371 (508)
T COG4262 367 DVVIV 371 (508)
T ss_pred cEEEE
Confidence 88875
No 190
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.01 E-value=1.3e-05 Score=52.14 Aligned_cols=61 Identities=23% Similarity=0.277 Sum_probs=51.9
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC-CCCcccEEEe
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-AIPNADAVFM 87 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-~~p~~D~i~l 87 (90)
..+.|+|.|+|.++.-.++. .-++++++. |...+.|.++ .+++.+.||..+ .+..+|+|++
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~--A~rViAiE~dPk~a~~a~eN~~v~g~~n~evv~gDA~~y~fe~ADvvic 102 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHA--AERVIAIEKDPKRARLAEENLHVPGDVNWEVVVGDARDYDFENADVVIC 102 (252)
T ss_pred hceeeccCCcchHHHHHHhh--hceEEEEecCcHHHHHhhhcCCCCCCcceEEEecccccccccccceeHH
Confidence 68999999999999877776 567899999 9888888874 689999999988 6766999875
No 191
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=97.98 E-value=5.3e-05 Score=52.18 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=62.4
Q ss_pred hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC--C-
Q 034578 8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD--A- 78 (90)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~--~- 78 (90)
+.+.+++.+. ..+...++|.=+|.|..+..++++.|+.+++++|. |.+++.+++ .+|++++.++|.+ .
T Consensus 8 ll~Evl~~L~---~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~~~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 8 LLDEVVEGLN---IKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDFEGRVVLIHDNFANFFEH 84 (305)
T ss_pred hHHHHHHhcC---cCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhcCCcEEEEeCCHHHHHHH
Confidence 3466777776 45667999999999999999999988899999999 999988865 2589999999875 1
Q ss_pred C-----CcccEEEe
Q 034578 79 I-----PNADAVFM 87 (90)
Q Consensus 79 ~-----p~~D~i~l 87 (90)
+ ..+|.|++
T Consensus 85 l~~~~~~~vDgIl~ 98 (305)
T TIGR00006 85 LDELLVTKIDGILV 98 (305)
T ss_pred HHhcCCCcccEEEE
Confidence 2 23788876
No 192
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.96 E-value=1.9e-05 Score=57.53 Aligned_cols=66 Identities=15% Similarity=0.241 Sum_probs=48.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhC-CC-----CCCeeEEEecCCC---CCCc--ccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATA-PT-----HEGVSHVGGDMFD---AIPN--ADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a-~~-----~~rv~~~~~d~~~---~~p~--~D~i~l~ 88 (90)
....+||||||.|.+...+++++|+..++++|+ ...+..+ ++ -.++.++.+|+.. .+|. .|-+++.
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N~~~~~~~~~~~~~~~~~~sv~~i~i~ 424 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITNFLLFPNNLDLILNDLPNNSLDGIYIL 424 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHhcCcccccEEEEE
Confidence 357899999999999999999999999999998 5433332 21 2577888777632 3443 5666654
No 193
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=97.96 E-value=9.2e-06 Score=54.20 Aligned_cols=42 Identities=29% Similarity=0.398 Sum_probs=35.4
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCC
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEG 67 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~r 67 (90)
.+.++|||||+|.-++.++..+.+ +++.|. +.|++.+++..+
T Consensus 34 h~~a~DvG~G~Gqa~~~iae~~k~--VIatD~s~~mL~~a~k~~~ 76 (261)
T KOG3010|consen 34 HRLAWDVGTGNGQAARGIAEHYKE--VIATDVSEAMLKVAKKHPP 76 (261)
T ss_pred cceEEEeccCCCcchHHHHHhhhh--heeecCCHHHHHHhhcCCC
Confidence 458999999999888888887654 799999 999999988543
No 194
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=97.89 E-value=4.8e-05 Score=51.81 Aligned_cols=77 Identities=16% Similarity=0.246 Sum_probs=53.1
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH-------CCCCeEEEeeh-HHHHHhCCC--------CCCeeEEE
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS-------YPHIKGINFDL-QHVIATAPT--------HEGVSHVG 72 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~-------~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~ 72 (90)
++-+++... .....+|+|-.||+|.++.++.+. .+..++.++|+ +.++..++. .....+..
T Consensus 35 ~~l~~~~~~---~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~~ 111 (311)
T PF02384_consen 35 VDLMVKLLN---PKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINIIQ 111 (311)
T ss_dssp HHHHHHHHT---T-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEEE
T ss_pred HHHHHhhhh---ccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhccccccccccc
Confidence 333444444 445668999999999999998874 47889999999 888776653 23356888
Q ss_pred ecCCC--CCC---cccEEEee
Q 034578 73 GDMFD--AIP---NADAVFMK 88 (90)
Q Consensus 73 ~d~~~--~~p---~~D~i~l~ 88 (90)
+|.+. ... .+|+|+.+
T Consensus 112 ~d~l~~~~~~~~~~~D~ii~N 132 (311)
T PF02384_consen 112 GDSLENDKFIKNQKFDVIIGN 132 (311)
T ss_dssp S-TTTSHSCTST--EEEEEEE
T ss_pred cccccccccccccccccccCC
Confidence 99887 222 39999875
No 195
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=97.89 E-value=0.00011 Score=50.37 Aligned_cols=67 Identities=15% Similarity=0.266 Sum_probs=54.2
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCC--CeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC-----C-CcccEE
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPH--IKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA-----I-PNADAV 85 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~-----~-p~~D~i 85 (90)
..+-+||||.||.|.+....+..+|. .++...|. |..++..++ .+-++|..+|.|+. + |..+++
T Consensus 134 g~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~ 213 (311)
T PF12147_consen 134 GRPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLA 213 (311)
T ss_pred CCceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEE
Confidence 45679999999999999999999997 78999998 887776654 24459999999982 2 336888
Q ss_pred Eee
Q 034578 86 FMK 88 (90)
Q Consensus 86 ~l~ 88 (90)
+.+
T Consensus 214 iVs 216 (311)
T PF12147_consen 214 IVS 216 (311)
T ss_pred EEe
Confidence 876
No 196
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.81 E-value=4.9e-05 Score=50.91 Aligned_cols=66 Identities=17% Similarity=0.247 Sum_probs=49.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCCCCC-c-ccEEEe
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFDAIP-N-ADAVFM 87 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~~~p-~-~D~i~l 87 (90)
..+.+|+|||||.--++.-.....|+++.+++|+ ..+++.... ..+.+....|.....| . +|+.++
T Consensus 104 ~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~v~Dl~~~~~~~~~DlaLl 177 (251)
T PF07091_consen 104 PPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDARVRDLLSDPPKEPADLALL 177 (251)
T ss_dssp ---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEEEE-TTTSHTTSEESEEEE
T ss_pred CCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCcceeEeeeeccCCCCCcchhhH
Confidence 3478999999999999999888889999999999 887776543 4677888889998544 3 898876
No 197
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=97.78 E-value=9.5e-05 Score=52.21 Aligned_cols=82 Identities=18% Similarity=0.150 Sum_probs=64.3
Q ss_pred chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCC-----------------------------------
Q 034578 4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHI----------------------------------- 48 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~----------------------------------- 48 (90)
+-+.++.+++..-. |.+...++|==||+|.++++.+...++.
T Consensus 175 LketLAaAil~lag---w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~ 251 (381)
T COG0116 175 LKETLAAAILLLAG---WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRG 251 (381)
T ss_pred chHHHHHHHHHHcC---CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhc
Confidence 44567788887777 4555799999999999999999887632
Q ss_pred ----eEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCC--cccEEEee
Q 034578 49 ----KGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIP--NADAVFMK 88 (90)
Q Consensus 49 ----~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p--~~D~i~l~ 88 (90)
..+++|+ |.+++.|+. .+.|+|..+|+.. .-| ++|+++++
T Consensus 252 ~~~~~~~G~Did~r~i~~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~N 306 (381)
T COG0116 252 KELPIIYGSDIDPRHIEGAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISN 306 (381)
T ss_pred CccceEEEecCCHHHHHHHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeC
Confidence 2679999 999998876 3679999999976 333 48998875
No 198
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=3.9e-05 Score=55.77 Aligned_cols=52 Identities=17% Similarity=0.341 Sum_probs=44.4
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEec
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGD 74 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d 74 (90)
+.....++|+.||||.++.++++. -.+++++++ |++++-|+++ .+.+|+.|-
T Consensus 381 l~~~k~llDv~CGTG~iglala~~--~~~ViGvEi~~~aV~dA~~nA~~NgisNa~Fi~gq 439 (534)
T KOG2187|consen 381 LPADKTLLDVCCGTGTIGLALARG--VKRVIGVEISPDAVEDAEKNAQINGISNATFIVGQ 439 (534)
T ss_pred CCCCcEEEEEeecCCceehhhhcc--ccceeeeecChhhcchhhhcchhcCccceeeeecc
Confidence 556689999999999999999986 467899999 9999988763 689999983
No 199
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.74 E-value=6.5e-05 Score=53.92 Aligned_cols=76 Identities=17% Similarity=0.215 Sum_probs=57.4
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecCCC--
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDMFD-- 77 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~-- 77 (90)
.+.+.+++..+ ..+..+++|+=||.|.++..++++ ..+++++|+ |++++.|+++ .+++|..++..+
T Consensus 280 kl~~~a~~~~~---~~~~~~vlDlYCGvG~f~l~lA~~--~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~ 354 (432)
T COG2265 280 KLYETALEWLE---LAGGERVLDLYCGVGTFGLPLAKR--VKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFT 354 (432)
T ss_pred HHHHHHHHHHh---hcCCCEEEEeccCCChhhhhhccc--CCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHh
Confidence 34444445444 446679999999999999999965 467999999 9999988762 669999999876
Q ss_pred -CCC---cccEEEe
Q 034578 78 -AIP---NADAVFM 87 (90)
Q Consensus 78 -~~p---~~D~i~l 87 (90)
.+. .+|.|++
T Consensus 355 ~~~~~~~~~d~Vvv 368 (432)
T COG2265 355 PAWWEGYKPDVVVV 368 (432)
T ss_pred hhccccCCCCEEEE
Confidence 222 2688876
No 200
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=97.71 E-value=0.00016 Score=46.47 Aligned_cols=64 Identities=14% Similarity=0.221 Sum_probs=46.8
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh-HH---HHHhCCC---CCCeeEEEecCCC-CCC-cccEEEeec
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QH---VIATAPT---HEGVSHVGGDMFD-AIP-NADAVFMKV 89 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~---~~~~a~~---~~rv~~~~~d~~~-~~p-~~D~i~l~~ 89 (90)
+++|||+|.|.=++-++=.+|+.+++.+|. .. .++.+.. -++++++.+...+ ..+ .||+++.+-
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~nv~v~~~R~E~~~~~~~fd~v~aRA 123 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSNVEVINGRAEEPEYRESFDVVTARA 123 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SSEEEEES-HHHTTTTT-EEEEEEES
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCCEEEEEeeecccccCCCccEEEeeh
Confidence 899999999999999999999999999995 33 2222221 3679999998877 333 399998764
No 201
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=97.70 E-value=2.6e-05 Score=49.99 Aligned_cols=64 Identities=16% Similarity=0.254 Sum_probs=48.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C---C-cccEEEe
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I---P-NADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~---p-~~D~i~l 87 (90)
...++||+=||||.++.+.+.+. ..+++.+|. +.+++..++ .++++.+.+|.+.. . . .+|+|++
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRG-A~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRG-AKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT--SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred CCCeEEEcCCccCccHHHHHhcC-CCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 46899999999999999999875 357999999 888887765 25689999997652 2 2 3899987
No 202
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=97.69 E-value=9.8e-05 Score=48.19 Aligned_cols=36 Identities=17% Similarity=0.336 Sum_probs=30.7
Q ss_pred CCC-eEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHH
Q 034578 23 NIR-SMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHV 58 (90)
Q Consensus 23 ~~~-~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~ 58 (90)
... +||+||+|||..+..+++++|+++-.-.|. +..
T Consensus 24 ~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~ 61 (204)
T PF06080_consen 24 DSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNL 61 (204)
T ss_pred ccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHH
Confidence 344 599999999999999999999999888886 443
No 203
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=97.68 E-value=4.5e-05 Score=53.28 Aligned_cols=64 Identities=17% Similarity=0.294 Sum_probs=45.8
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEecC
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGGDM 75 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~ 75 (90)
+.+.+.+++.++ ..+ ..++|+-||.|.++..+++.+ .+++++|. +++++.|+++ ++++|+.++.
T Consensus 183 ~~l~~~~~~~l~---~~~-~~vlDlycG~G~fsl~la~~~--~~V~gvE~~~~av~~A~~Na~~N~i~n~~f~~~~~ 253 (352)
T PF05958_consen 183 EKLYEQALEWLD---LSK-GDVLDLYCGVGTFSLPLAKKA--KKVIGVEIVEEAVEDARENAKLNGIDNVEFIRGDA 253 (352)
T ss_dssp HHHHHHHHHHCT---T-T-TEEEEES-TTTCCHHHHHCCS--SEEEEEES-HHHHHHHHHHHHHTT--SEEEEE--S
T ss_pred HHHHHHHHHHhh---cCC-CcEEEEeecCCHHHHHHHhhC--CeEEEeeCCHHHHHHHHHHHHHcCCCcceEEEeec
Confidence 344555566555 333 379999999999999999976 46899999 9999988762 6799987653
No 204
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.68 E-value=0.0001 Score=53.76 Aligned_cols=66 Identities=14% Similarity=0.208 Sum_probs=47.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC--------CeEEEeeh-HHHHHhCCCC----C--CeeEEEecCCCC--------C
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPH--------IKGINFDL-QHVIATAPTH----E--GVSHVGGDMFDA--------I 79 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-p~~~~~a~~~----~--rv~~~~~d~~~~--------~ 79 (90)
...+|+|.|||+|.++.+++++.+. ..+.++|+ |.+++.++.+ . .+....+|+... .
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFALLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcCCCCceeeeccccccccccccccc
Confidence 3468999999999999999987752 56899999 8888877541 2 345555665531 1
Q ss_pred CcccEEEee
Q 034578 80 PNADAVFMK 88 (90)
Q Consensus 80 p~~D~i~l~ 88 (90)
+.||+|+.+
T Consensus 111 ~~fD~IIgN 119 (524)
T TIGR02987 111 DLFDIVITN 119 (524)
T ss_pred CcccEEEeC
Confidence 248999864
No 205
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.67 E-value=0.00042 Score=47.24 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=58.7
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CC
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AI 79 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~ 79 (90)
.-|+..++ ..+..+|++-|.|+|.++.++++.. |.-++.-+|. ..-.+.|++ .+++++..-|.-. .+
T Consensus 95 a~I~~~L~---i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF 171 (314)
T KOG2915|consen 95 AMILSMLE---IRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGF 171 (314)
T ss_pred HHHHHHhc---CCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCc
Confidence 44566666 6778999999999999999999995 8899999998 555555544 3789999999876 33
Q ss_pred C--c--ccEEEe
Q 034578 80 P--N--ADAVFM 87 (90)
Q Consensus 80 p--~--~D~i~l 87 (90)
+ + +|.|+|
T Consensus 172 ~~ks~~aDaVFL 183 (314)
T KOG2915|consen 172 LIKSLKADAVFL 183 (314)
T ss_pred cccccccceEEE
Confidence 2 2 899887
No 206
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=97.65 E-value=9.1e-05 Score=49.56 Aligned_cols=64 Identities=19% Similarity=0.316 Sum_probs=50.4
Q ss_pred CeEEEecCCchHHHHHHHHHCCC--CeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCC-----CCc--ccEEEee
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPH--IKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDA-----IPN--ADAVFMK 88 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~-----~p~--~D~i~l~ 88 (90)
.+|+.||||.|...--+++..|+ +++.+.|. |.+++.-+++ .|+.-...|+..+ ++. .|+++|-
T Consensus 73 ~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e~~~~afv~Dlt~~~~~~~~~~~svD~it~I 151 (264)
T KOG2361|consen 73 ETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDESRVEAFVWDLTSPSLKEPPEEGSVDIITLI 151 (264)
T ss_pred hhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccchhhhcccceeccchhccCCCCcCccceEEEE
Confidence 47999999999999999999988 99999999 9999987763 4566666676652 222 6887763
No 207
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=97.63 E-value=0.00013 Score=49.94 Aligned_cols=67 Identities=15% Similarity=0.184 Sum_probs=50.3
Q ss_pred CCeEEEecCCchH----HHHHHHHHCC----CCeEEEeeh-HHHHHhCCC------------------------------
Q 034578 24 IRSMVDVGGGTGT----VLAEIVKSYP----HIKGINFDL-QHVIATAPT------------------------------ 64 (90)
Q Consensus 24 ~~~vlDvG~G~G~----~~~~l~~~~p----~~~~~~~D~-p~~~~~a~~------------------------------ 64 (90)
.-+|...||+||. ++..+.+..+ +.++++.|+ +.+++.|++
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 4689999999998 4444444332 478999999 999888764
Q ss_pred -------CCCeeEEEecCCC-CCC--c-ccEEEeecC
Q 034578 65 -------HEGVSHVGGDMFD-AIP--N-ADAVFMKVA 90 (90)
Q Consensus 65 -------~~rv~~~~~d~~~-~~p--~-~D~i~l~~v 90 (90)
..+|+|..+|+.+ ++| . +|+|++++|
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNv 232 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNV 232 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhH
Confidence 0457899999998 443 3 999999875
No 208
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.63 E-value=0.00022 Score=49.27 Aligned_cols=67 Identities=16% Similarity=0.189 Sum_probs=51.9
Q ss_pred hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC
Q 034578 8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD 77 (90)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~ 77 (90)
+.+.+++.+. ..+....+|.=-|.|..+.++++++|..+++++|. |.+++.+++ .+|+.++.++|.+
T Consensus 8 ll~Evl~~L~---~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~~~r~~~~~~~F~~ 80 (310)
T PF01795_consen 8 LLKEVLEALN---PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKFDDRFIFIHGNFSN 80 (310)
T ss_dssp THHHHHHHHT-----TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCCCTTEEEEES-GGG
T ss_pred cHHHHHHhhC---cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhccceEEEEeccHHH
Confidence 4566777776 56678999999999999999999999999999999 999987765 4899999999875
No 209
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=97.62 E-value=8.7e-05 Score=43.92 Aligned_cols=31 Identities=23% Similarity=0.418 Sum_probs=26.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
+...++|+|||+|.+..-|.++ +.++.++|.
T Consensus 58 ~~~~FVDlGCGNGLLV~IL~~E--Gy~G~GiD~ 88 (112)
T PF07757_consen 58 KFQGFVDLGCGNGLLVYILNSE--GYPGWGIDA 88 (112)
T ss_pred CCCceEEccCCchHHHHHHHhC--CCCcccccc
Confidence 4678999999999999988887 677899993
No 210
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=97.59 E-value=0.00015 Score=45.75 Aligned_cols=49 Identities=16% Similarity=0.305 Sum_probs=37.4
Q ss_pred hhhHHHHHhhcccCCCC--CCCeEEEecCCchHHHHHHHHHC-CCCeEEEeehH
Q 034578 6 KITMKAFVSHYKVDGFN--NIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDLQ 56 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~--~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~p 56 (90)
...-..+.+.++. +. ...++||+||++|.++..++++. +..+++++|+.
T Consensus 6 ~~KL~ei~~~~~~--~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~ 57 (181)
T PF01728_consen 6 AFKLYEIDEKFKI--FKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLG 57 (181)
T ss_dssp HHHHHHHHHTTSS--S-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESS
T ss_pred HHHHHHHHHHCCC--CCcccccEEEEcCCcccceeeeeeecccccceEEEEecc
Confidence 3344566667762 33 34899999999999999999997 78899999983
No 211
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=97.59 E-value=0.00022 Score=46.91 Aligned_cols=66 Identities=18% Similarity=0.280 Sum_probs=50.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HH---HHHhCCC---CCCeeEEEecCCC-C-CCc-ccEEEeec
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QH---VIATAPT---HEGVSHVGGDMFD-A-IPN-ADAVFMKV 89 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~---~~~~a~~---~~rv~~~~~d~~~-~-~p~-~D~i~l~~ 89 (90)
..+++|||+|.|.=++-++-.+|+.+++.+|. .. -++.+.+ -++++++.+...+ . -+. ||+++.+-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~nv~i~~~RaE~~~~~~~~~D~vtsRA 143 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLENVEIVHGRAEEFGQEKKQYDVVTSRA 143 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCCeEEehhhHhhcccccccCcEEEeeh
Confidence 58999999999999999998899999999995 32 2333322 3779999988866 2 234 99998763
No 212
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.55 E-value=0.00023 Score=46.40 Aligned_cols=68 Identities=13% Similarity=0.193 Sum_probs=49.8
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-----CCeeEEEecCCCCCCcccEEEeec
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-----EGVSHVGGDMFDAIPNADAVFMKV 89 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-----~rv~~~~~d~~~~~p~~D~i~l~~ 89 (90)
.-..++|||+|.|+|..++..++.. ...++.-|+ |...+..+-+ -.+.++..|...+-+.+|+++.+-
T Consensus 77 tVrgkrVLd~gagsgLvaIAaa~aG-A~~v~a~d~~P~~~~ai~lNa~angv~i~~~~~d~~g~~~~~Dl~LagD 150 (218)
T COG3897 77 TVRGKRVLDLGAGSGLVAIAAARAG-AAEVVAADIDPWLEQAIRLNAAANGVSILFTHADLIGSPPAFDLLLAGD 150 (218)
T ss_pred ccccceeeecccccChHHHHHHHhh-hHHHHhcCCChHHHHHhhcchhhccceeEEeeccccCCCcceeEEEeec
Confidence 3356899999999999999988874 344666666 7766655542 458888888776445599998864
No 213
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=97.53 E-value=7.9e-05 Score=49.05 Aligned_cols=65 Identities=20% Similarity=0.154 Sum_probs=44.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCee-EEEecCCC-C-CCc--ccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVS-HVGGDMFD-A-IPN--ADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~-~~~~d~~~-~-~p~--~D~i~l~ 88 (90)
....+|+||||||..-...- --|..++|++|. |.|-+.+.+ ...+. |+.++..+ + +++ +|+|+..
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~-~~p~~svt~lDpn~~mee~~~ks~~E~k~~~~~~fvva~ge~l~~l~d~s~DtVV~T 152 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYP-WKPINSVTCLDPNEKMEEIADKSAAEKKPLQVERFVVADGENLPQLADGSYDTVVCT 152 (252)
T ss_pred CccceEEecccCCCCccccc-CCCCceEEEeCCcHHHHHHHHHHHhhccCcceEEEEeechhcCcccccCCeeeEEEE
Confidence 34568999999998544322 136788999998 888776643 24555 88887765 3 444 8988754
No 214
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=97.53 E-value=0.00025 Score=50.11 Aligned_cols=63 Identities=8% Similarity=0.103 Sum_probs=50.7
Q ss_pred CeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCCC------CCeeEEEecCCCCC---C-cccEEEe
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPTH------EGVSHVGGDMFDAI---P-NADAVFM 87 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~------~rv~~~~~d~~~~~---p-~~D~i~l 87 (90)
-++||.-||+|..+++.+++.++ -++++.|+ |.+++.++++ .+++++.+|....+ . .+|+|.+
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~~~~fDvIdl 120 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYRNRKFHVIDI 120 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHhCCCCCEEEe
Confidence 48999999999999999998654 57999999 9999888762 35788888887622 2 3898876
No 215
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.51 E-value=0.00011 Score=46.13 Aligned_cols=72 Identities=14% Similarity=0.246 Sum_probs=55.0
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD- 77 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~- 77 (90)
.-.++++..++ -.+..+++|+|.|.|.+..+.++.. -...+++++ |..+..++- ..+.+|..-|+++
T Consensus 59 eQv~nVLSll~---~n~~GklvDlGSGDGRiVlaaar~g-~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 59 EQVENVLSLLR---GNPKGKLVDLGSGDGRIVLAAARCG-LRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred HHHHHHHHHcc---CCCCCcEEeccCCCceeehhhhhhC-CCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 34566677666 3556899999999999999988875 456799999 998887763 3678888888887
Q ss_pred CCCcc
Q 034578 78 AIPNA 82 (90)
Q Consensus 78 ~~p~~ 82 (90)
++.+|
T Consensus 135 dl~dy 139 (199)
T KOG4058|consen 135 DLRDY 139 (199)
T ss_pred ccccc
Confidence 56554
No 216
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.44 E-value=0.00062 Score=44.51 Aligned_cols=67 Identities=21% Similarity=0.241 Sum_probs=50.5
Q ss_pred hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeehHHHHHhCCCCCCeeEEEecCCC
Q 034578 5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDLQHVIATAPTHEGVSHVGGDMFD 77 (90)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~ 77 (90)
+..--..|.+.+. .+++...|+|+|+-+|..+..+++.. +..+++++|+.++-. -+.+.++++|++.
T Consensus 29 Aa~KL~el~~k~~--i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~----~~~V~~iq~d~~~ 96 (205)
T COG0293 29 AAYKLLELNEKFK--LFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP----IPGVIFLQGDITD 96 (205)
T ss_pred HHHHHHHHHHhcC--eecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----CCCceEEeeeccC
Confidence 3344455666665 46778999999999999999998885 456799999844422 2459999999987
No 217
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.43 E-value=0.00057 Score=45.14 Aligned_cols=65 Identities=15% Similarity=0.224 Sum_probs=53.1
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCC-c--ccEEEee
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIP-N--ADAVFMK 88 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p-~--~D~i~l~ 88 (90)
..++.||||-.+.+...+.+.+|..++++.|+ |..++.|.+ .+|++...+|-+.++. + .|+++..
T Consensus 17 ~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIA 92 (226)
T COG2384 17 GARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIA 92 (226)
T ss_pred CCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEe
Confidence 34599999999999999999999999999998 777766644 3788999999887652 2 7877653
No 218
>KOG2730 consensus Methylase [General function prediction only]
Probab=97.34 E-value=0.00013 Score=48.41 Aligned_cols=53 Identities=26% Similarity=0.355 Sum_probs=44.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC-------CCeeEEEecCCC
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH-------EGVSHVGGDMFD 77 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~-------~rv~~~~~d~~~ 77 (90)
....|+|.=||-|.-.+..+.++|. ++++|+ |.-++.|+.+ +|++|++|||++
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~--VisIdiDPikIa~AkhNaeiYGI~~rItFI~GD~ld 154 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPY--VIAIDIDPVKIACARHNAEVYGVPDRITFICGDFLD 154 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCe--EEEEeccHHHHHHHhccceeecCCceeEEEechHHH
Confidence 5678999999999999999999876 577777 8877777762 799999999987
No 219
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=97.33 E-value=0.00015 Score=47.60 Aligned_cols=36 Identities=19% Similarity=0.466 Sum_probs=31.6
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHH
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIA 60 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~ 60 (90)
-.+.|||||.|.++..|+..||+--++++++ -.+.+
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsd 98 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSD 98 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHH
Confidence 4699999999999999999999999999997 55433
No 220
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=97.33 E-value=0.0011 Score=44.83 Aligned_cols=65 Identities=12% Similarity=0.152 Sum_probs=45.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCC-cccEEEeecC
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIP-NADAVFMKVA 90 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p-~~D~i~l~~v 90 (90)
+..++||||.|.|.+...++..|.+ +.+-|. +.|..+-++.+ .+++..+=++.-+ .+|+|.+-|+
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~--v~aTE~S~~Mr~rL~~kg-~~vl~~~~w~~~~~~fDvIscLNv 160 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKE--VYATEASPPMRWRLSKKG-FTVLDIDDWQQTDFKFDVISCLNV 160 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcce--EEeecCCHHHHHHHHhCC-CeEEehhhhhccCCceEEEeehhh
Confidence 4578999999999999999999877 566676 88877655432 3333333233223 3899987654
No 221
>PRK10742 putative methyltransferase; Provisional
Probab=97.20 E-value=0.0012 Score=44.34 Aligned_cols=73 Identities=15% Similarity=0.150 Sum_probs=53.7
Q ss_pred HHHHhhcccCCCCCCC--eEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC---------------CCCeeEE
Q 034578 10 KAFVSHYKVDGFNNIR--SMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT---------------HEGVSHV 71 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~--~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------------~~rv~~~ 71 (90)
+.+++... +.+.. +|||.=+|+|..+..++.+ +++++.+|. |.+....+. ..|++++
T Consensus 76 ~~l~kAvg---lk~g~~p~VLD~TAGlG~Da~~las~--G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~ 150 (250)
T PRK10742 76 EAVAKAVG---IKGDYLPDVVDATAGLGRDAFVLASV--GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLI 150 (250)
T ss_pred cHHHHHhC---CCCCCCCEEEECCCCccHHHHHHHHc--CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEE
Confidence 55666665 44444 8999999999999999998 677999997 664432211 1579999
Q ss_pred EecCCCC---CCc-ccEEEe
Q 034578 72 GGDMFDA---IPN-ADAVFM 87 (90)
Q Consensus 72 ~~d~~~~---~p~-~D~i~l 87 (90)
.+|..+. .+. +|+|++
T Consensus 151 ~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 151 HASSLTALTDITPRPQVVYL 170 (250)
T ss_pred eCcHHHHHhhCCCCCcEEEE
Confidence 9998763 333 899987
No 222
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.18 E-value=0.0017 Score=44.73 Aligned_cols=67 Identities=21% Similarity=0.215 Sum_probs=57.0
Q ss_pred hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCe-EEEeeh-HHHHHhCCC-----CCCeeEEEecCCC
Q 034578 8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIK-GINFDL-QHVIATAPT-----HEGVSHVGGDMFD 77 (90)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~ 77 (90)
+.+.+++.+. ..+....+|.==|.|..+..+++++|... .+++|. |.+++.|++ .+|++++.++|.+
T Consensus 11 Ll~E~i~~L~---~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~~r~~~v~~~F~~ 84 (314)
T COG0275 11 LLNEVVELLA---PKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFDGRVTLVHGNFAN 84 (314)
T ss_pred HHHHHHHhcc---cCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccCCcEEEEeCcHHH
Confidence 4566777777 55678999999999999999999998665 999999 999999876 4799999998865
No 223
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=97.15 E-value=0.0023 Score=44.46 Aligned_cols=66 Identities=11% Similarity=0.144 Sum_probs=45.6
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC----CCCeEEEeeh-HHHHHhCCC------CCCeeE--EEe
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY----PHIKGINFDL-QHVIATAPT------HEGVSH--VGG 73 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~----p~~~~~~~D~-p~~~~~a~~------~~rv~~--~~~ 73 (90)
..+..|++.++ +...++|+|||+|.=...|+++. ...+.+.+|+ .++++.+.+ .+.+++ +.+
T Consensus 65 ~~~~~Ia~~i~-----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~g 139 (319)
T TIGR03439 65 KHSSDIAASIP-----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLG 139 (319)
T ss_pred HHHHHHHHhcC-----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEe
Confidence 34556666665 34589999999998665555544 3578999998 677665533 255655 789
Q ss_pred cCCC
Q 034578 74 DMFD 77 (90)
Q Consensus 74 d~~~ 77 (90)
||.+
T Consensus 140 dy~~ 143 (319)
T TIGR03439 140 TYDD 143 (319)
T ss_pred cHHH
Confidence 9876
No 224
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=97.14 E-value=0.002 Score=41.62 Aligned_cols=64 Identities=14% Similarity=0.187 Sum_probs=50.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCC---C---CcccEEEe
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDA---I---PNADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~---~---p~~D~i~l 87 (90)
...++||+=+|||.++.+.+.+. ..+++.+|. ..+++..++ ..+.+++..|.... . +.||+|++
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRG-A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVfl 120 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRG-AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFL 120 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCC-CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEe
Confidence 35799999999999999999985 457899998 777777665 37888888888741 2 12899986
No 225
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=97.12 E-value=0.00092 Score=45.33 Aligned_cols=55 Identities=25% Similarity=0.381 Sum_probs=32.9
Q ss_pred CCCeEEEecCCch--HHHHHHH-HHCCCCeEEEeeh-HHHHHhCCC----CCC--eeEEEecCCC
Q 034578 23 NIRSMVDVGGGTG--TVLAEIV-KSYPHIKGINFDL-QHVIATAPT----HEG--VSHVGGDMFD 77 (90)
Q Consensus 23 ~~~~vlDvG~G~G--~~~~~l~-~~~p~~~~~~~D~-p~~~~~a~~----~~r--v~~~~~d~~~ 77 (90)
+...+||+|||-- ....+++ +..|+++++=+|. |-++..++. +++ ..++.+|+.+
T Consensus 68 GIrQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~g~t~~v~aD~r~ 132 (267)
T PF04672_consen 68 GIRQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPRGRTAYVQADLRD 132 (267)
T ss_dssp ---EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TTSEEEEEE--TT-
T ss_pred CcceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCCccEEEEeCCCCC
Confidence 6688999999933 2344454 4479999999999 888887764 344 8999999987
No 226
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=97.09 E-value=0.00076 Score=45.27 Aligned_cols=64 Identities=19% Similarity=0.271 Sum_probs=51.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------CCeeEEEecCCC---CCCc--ccEEE
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------EGVSHVGGDMFD---AIPN--ADAVF 86 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~d~~~---~~p~--~D~i~ 86 (90)
++..+|||.+.|-|..+++.+++. ...++-++. |.+++.|.-+ .+++++.||.++ .+++ +|+|+
T Consensus 133 ~~G~rVLDtC~GLGYtAi~a~~rG-A~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIi 210 (287)
T COG2521 133 KRGERVLDTCTGLGYTAIEALERG-AIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAII 210 (287)
T ss_pred ccCCEeeeeccCccHHHHHHHHcC-CcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEe
Confidence 356899999999999999999974 237888888 9999988753 468999999887 4554 89886
No 227
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=97.08 E-value=0.00053 Score=48.76 Aligned_cols=62 Identities=15% Similarity=0.198 Sum_probs=52.6
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCC-eEEEeeh-HHHHHhCCCC--------CCeeEEEecCCCCC----C---cccEEE
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHI-KGINFDL-QHVIATAPTH--------EGVSHVGGDMFDAI----P---NADAVF 86 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~~--------~rv~~~~~d~~~~~----p---~~D~i~ 86 (90)
.++|||+=|=||.++...+.. ++ ++|.+|+ ..+++.|+++ .+.+|+.+|.|+.+ . .||+|+
T Consensus 218 GkrvLNlFsYTGgfSv~Aa~g--GA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIi 295 (393)
T COG1092 218 GKRVLNLFSYTGGFSVHAALG--GASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLII 295 (393)
T ss_pred CCeEEEecccCcHHHHHHHhc--CCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEE
Confidence 689999999999999999886 45 8999999 8899998872 67899999999832 2 399998
Q ss_pred e
Q 034578 87 M 87 (90)
Q Consensus 87 l 87 (90)
+
T Consensus 296 l 296 (393)
T COG1092 296 L 296 (393)
T ss_pred E
Confidence 7
No 228
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=97.05 E-value=0.0015 Score=44.96 Aligned_cols=65 Identities=15% Similarity=0.227 Sum_probs=40.9
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--------CCCeeEEEe----cCCCCC--C-c-ccEEE
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--------HEGVSHVGG----DMFDAI--P-N-ADAVF 86 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~----d~~~~~--p-~-~D~i~ 86 (90)
.-++||||+|..++---|..+..+.++++.|+ +..++.|++ .++|+++.. +++..+ + + +|..+
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~~~i~~~~e~~dftm 182 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIFDGIIQPNERFDFTM 182 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SSTTTSTT--S-EEEEE
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccchhhhcccceeeEEe
Confidence 46899999998875444443434899999999 999988875 367888755 455533 1 2 77776
Q ss_pred ee
Q 034578 87 MK 88 (90)
Q Consensus 87 l~ 88 (90)
++
T Consensus 183 CN 184 (299)
T PF05971_consen 183 CN 184 (299)
T ss_dssp E-
T ss_pred cC
Confidence 64
No 229
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=96.99 E-value=0.0055 Score=40.39 Aligned_cols=66 Identities=15% Similarity=0.215 Sum_probs=36.6
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCC-CCCc--ccEEE
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFD-AIPN--ADAVF 86 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~i~ 86 (90)
+.+++.+.. .++...|.|+|||.+.++..+.. ..++.-+|+-. .++ .+++.|+.. |++. .|+++
T Consensus 61 d~iI~~l~~--~~~~~viaD~GCGdA~la~~~~~---~~~V~SfDLva------~n~--~Vtacdia~vPL~~~svDv~V 127 (219)
T PF05148_consen 61 DVIIEWLKK--RPKSLVIADFGCGDAKLAKAVPN---KHKVHSFDLVA------PNP--RVTACDIANVPLEDESVDVAV 127 (219)
T ss_dssp HHHHHHHCT--S-TTS-EEEES-TT-HHHHH--S------EEEEESS-------SST--TEEES-TTS-S--TT-EEEEE
T ss_pred HHHHHHHHh--cCCCEEEEECCCchHHHHHhccc---CceEEEeeccC------CCC--CEEEecCccCcCCCCceeEEE
Confidence 445555542 33456899999999999966542 46789999611 133 467799966 7765 79988
Q ss_pred ee
Q 034578 87 MK 88 (90)
Q Consensus 87 l~ 88 (90)
+.
T Consensus 128 fc 129 (219)
T PF05148_consen 128 FC 129 (219)
T ss_dssp EE
T ss_pred EE
Confidence 75
No 230
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=96.89 E-value=0.0059 Score=44.47 Aligned_cols=67 Identities=15% Similarity=0.130 Sum_probs=49.9
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC---CCCc-ccEEEe
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT------HEGVSHVGGDMFD---AIPN-ADAVFM 87 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~---~~p~-~D~i~l 87 (90)
..+..+|||+++|+|.=+..++.... ...+++.|+ +.-++..++ -.++.+...|... .++. ||.|++
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSNVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeCchhhhhhhchhhcCeEEE
Confidence 34668999999999999999999864 468999998 776655543 2567777777654 2344 898885
No 231
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=96.85 E-value=0.0015 Score=43.02 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=43.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCC-eeEEEecCCCCCC--c-ccEEEeecC
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEG-VSHVGGDMFDAIP--N-ADAVFMKVA 90 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~r-v~~~~~d~~~~~p--~-~D~i~l~~v 90 (90)
+..+.||.|+|-|.++..++... --++..+|. +..++.|++ ..+ .+++...+-+..| . ||+|++-|+
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~-f~~VDlVEp~~~Fl~~a~~~l~~~~~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~ 131 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPV-FDEVDLVEPVEKFLEQAKEYLGKDNPRVGEFYCVGLQDFTPEEGKYDLIWIQWC 131 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC--SEEEEEES-HHHHHHHHHHTCCGGCCEEEEEES-GGG----TT-EEEEEEES-
T ss_pred CcceEEecccccchhHHHHHHHh-cCEeEEeccCHHHHHHHHHHhcccCCCcceEEecCHhhccCCCCcEeEEEehHh
Confidence 46799999999999999887654 345788887 888888873 233 4555555544223 3 999998875
No 232
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.64 E-value=0.0017 Score=47.42 Aligned_cols=65 Identities=23% Similarity=0.317 Sum_probs=37.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEe---eh-HHHHHhCCCCCCeeEEEecCC-C--CCCc--ccEEEeec
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINF---DL-QHVIATAPTHEGVSHVGGDMF-D--AIPN--ADAVFMKV 89 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~---D~-p~~~~~a~~~~rv~~~~~d~~-~--~~p~--~D~i~l~~ 89 (90)
...+.+||+|||+|+++..++++. +...-+ |- +.-++.|.+++ +--+-+-+- + |+|. +|++-+++
T Consensus 116 g~iR~~LDvGcG~aSF~a~l~~r~--V~t~s~a~~d~~~~qvqfaleRG-vpa~~~~~~s~rLPfp~~~fDmvHcsr 189 (506)
T PF03141_consen 116 GGIRTALDVGCGVASFGAYLLERN--VTTMSFAPNDEHEAQVQFALERG-VPAMIGVLGSQRLPFPSNAFDMVHCSR 189 (506)
T ss_pred CceEEEEeccceeehhHHHHhhCC--ceEEEcccccCCchhhhhhhhcC-cchhhhhhccccccCCccchhhhhccc
Confidence 345789999999999999999984 332222 32 34455554432 111112221 1 5554 78876654
No 233
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=96.63 E-value=0.0032 Score=44.10 Aligned_cols=66 Identities=20% Similarity=0.210 Sum_probs=54.7
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCC---CcccEEEeec
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAI---PNADAVFMKV 89 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~---p~~D~i~l~~ 89 (90)
...+|+|.=+|-|.+++.+++... .+++++|+ |++++..++ .++++.+.||..+-. +.||=|+|++
T Consensus 188 ~GE~V~DmFAGVGpfsi~~Ak~g~-~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aDrIim~~ 264 (341)
T COG2520 188 EGETVLDMFAGVGPFSIPIAKKGR-PKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVADRIIMGL 264 (341)
T ss_pred CCCEEEEccCCcccchhhhhhcCC-ceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCCEEEeCC
Confidence 478999999999999999999753 34999999 999887766 366999999998832 3499999975
No 234
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=96.56 E-value=0.0058 Score=41.68 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=38.8
Q ss_pred CCeEEEecCCchHH-HHHHHHH-CCCCeEEEeeh-HHHHHhCCC--------CCCeeEEEecCCC---CCCcccEEEee
Q 034578 24 IRSMVDVGGGTGTV-LAEIVKS-YPHIKGINFDL-QHVIATAPT--------HEGVSHVGGDMFD---AIPNADAVFMK 88 (90)
Q Consensus 24 ~~~vlDvG~G~G~~-~~~l~~~-~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~d~~~---~~p~~D~i~l~ 88 (90)
+.+|+=||+|+=-+ ++.++++ .++.+++++|+ |.+++.+++ ..+++|+.+|..+ ++..||+|++.
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lA 199 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLA 199 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEh
Confidence 46999999996554 4455544 37888999999 999988865 4789999999876 24459999875
No 235
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.55 E-value=0.0043 Score=43.74 Aligned_cols=56 Identities=18% Similarity=0.369 Sum_probs=37.9
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC----C----CCeEEEeeh-HHHHHh
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY----P----HIKGINFDL-QHVIAT 61 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~----p----~~~~~~~D~-p~~~~~ 61 (90)
+.++..+++.+..-+.+.+..++++|.|+|.++..+++.. | .+++..++. |...+.
T Consensus 60 ella~~~~~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~ 124 (370)
T COG1565 60 ELLAEQFLQLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRAR 124 (370)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHH
Confidence 3445555655553112345689999999999888877653 4 678899998 665544
No 236
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=96.39 E-value=0.0039 Score=43.48 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=44.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC----------------CCeeEEEecCCCC-----C-
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH----------------EGVSHVGGDMFDA-----I- 79 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~----------------~rv~~~~~d~~~~-----~- 79 (90)
+..+|||+|||-|.-+....+. .-...+++|+ +..++.|+++ -...|+.+|.+.. +
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~-~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~ 140 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKA-KIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLP 140 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHT-T-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSS
T ss_pred CCCeEEEecCCCchhHHHHHhc-CCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhcc
Confidence 5689999999999988887775 3456899999 8888877541 1356788887751 2
Q ss_pred -C--cccEEEe
Q 034578 80 -P--NADAVFM 87 (90)
Q Consensus 80 -p--~~D~i~l 87 (90)
+ .+|+|-+
T Consensus 141 ~~~~~FDvVSc 151 (331)
T PF03291_consen 141 PRSRKFDVVSC 151 (331)
T ss_dssp STTS-EEEEEE
T ss_pred ccCCCcceeeh
Confidence 2 2788754
No 237
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=96.38 E-value=0.0077 Score=39.32 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=31.8
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeehH
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDLQ 56 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~p 56 (90)
+.+..+|||+|+.+|..+.-..++. |+..+.++|+-
T Consensus 67 l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDll 103 (232)
T KOG4589|consen 67 LRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLL 103 (232)
T ss_pred cCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeee
Confidence 5667899999999999999888886 99999999973
No 238
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=96.32 E-value=0.0069 Score=41.51 Aligned_cols=64 Identities=13% Similarity=0.176 Sum_probs=49.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--------CCCeeEEEecCCCCC------CcccEEEe
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--------HEGVSHVGGDMFDAI------PNADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--------~~rv~~~~~d~~~~~------p~~D~i~l 87 (90)
...+|||+=|=||.++...++. -..+++.+|. ..+++.+++ .++++|+.+|+|+.+ ..||+|++
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~g-GA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAG-GAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHT-TESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred CCCceEEecCCCCHHHHHHHHC-CCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 3579999999999999987764 3457999999 889988876 268999999998732 23999987
No 239
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=96.08 E-value=0.022 Score=37.64 Aligned_cols=76 Identities=11% Similarity=0.099 Sum_probs=47.9
Q ss_pred chhhhHHHHHhhcccC-CCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCC-CCCc
Q 034578 4 TTKITMKAFVSHYKVD-GFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFD-AIPN 81 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~~-~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~-~~p~ 81 (90)
.|+.+++++.+..... .....-++|||||-+...... .++-..++.+|+.+. .-.+.+.||++ |+|.
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s---~~~~fdvt~IDLns~--------~~~I~qqDFm~rplp~ 99 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS---TSGWFDVTRIDLNSQ--------HPGILQQDFMERPLPK 99 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCccc---ccCceeeEEeecCCC--------CCCceeeccccCCCCC
Confidence 3555666666655420 011235899999986554433 356677999998221 12456899999 7762
Q ss_pred -----ccEEEeecC
Q 034578 82 -----ADAVFMKVA 90 (90)
Q Consensus 82 -----~D~i~l~~v 90 (90)
||+|.++-|
T Consensus 100 ~~~e~FdvIs~SLV 113 (219)
T PF11968_consen 100 NESEKFDVISLSLV 113 (219)
T ss_pred CcccceeEEEEEEE
Confidence 999998753
No 240
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=95.76 E-value=0.015 Score=42.44 Aligned_cols=40 Identities=18% Similarity=0.199 Sum_probs=33.9
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT 64 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 64 (90)
.-.+||+|.|||.++....++. .=++++++. .+|.+.|++
T Consensus 67 kv~vLdigtGTGLLSmMAvrag-aD~vtA~EvfkPM~d~ark 107 (636)
T KOG1501|consen 67 KVFVLDIGTGTGLLSMMAVRAG-ADSVTACEVFKPMVDLARK 107 (636)
T ss_pred eEEEEEccCCccHHHHHHHHhc-CCeEEeehhhchHHHHHHH
Confidence 3579999999999999999987 445999998 888888875
No 241
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.74 E-value=0.044 Score=36.58 Aligned_cols=65 Identities=12% Similarity=0.275 Sum_probs=50.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCC--------c-ccE
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIP--------N-ADA 84 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p--------~-~D~ 84 (90)
++++.+|||.=||.=+..++.+.| +.+++.+|+ +...+.+.+ ...++++.++..+.++ + +|.
T Consensus 73 ~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~~~~~~tfDf 152 (237)
T KOG1663|consen 73 NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLADGESGTFDF 152 (237)
T ss_pred CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHhcCCCCceeE
Confidence 468999999999999999999986 578999998 666665543 4679999998776321 2 777
Q ss_pred EEe
Q 034578 85 VFM 87 (90)
Q Consensus 85 i~l 87 (90)
+++
T Consensus 153 aFv 155 (237)
T KOG1663|consen 153 AFV 155 (237)
T ss_pred EEE
Confidence 765
No 242
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=95.59 E-value=0.0036 Score=36.08 Aligned_cols=60 Identities=18% Similarity=0.266 Sum_probs=19.6
Q ss_pred EEecCCchHHHHHHHHHCCCC---eEEEeeh-H---HHHHhCCC---CCCeeEEEecCCCC---CC--cccEEEe
Q 034578 28 VDVGGGTGTVLAEIVKSYPHI---KGINFDL-Q---HVIATAPT---HEGVSHVGGDMFDA---IP--NADAVFM 87 (90)
Q Consensus 28 lDvG~G~G~~~~~l~~~~p~~---~~~~~D~-p---~~~~~a~~---~~rv~~~~~d~~~~---~p--~~D~i~l 87 (90)
|++|+..|.-+..+++..+.. +++.+|. + ..-+..++ .++++++.+|..+. ++ .+|++++
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~i 75 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPGDEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFI 75 (106)
T ss_dssp --------------------------EEEESS------------GGG-BTEEEEES-THHHHHHHHH--EEEEEE
T ss_pred CccccccccccccccccccccccCCEEEEECCCcccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEE
Confidence 578999999888888876544 6899998 6 33333332 47899999998762 33 3788775
No 243
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=95.53 E-value=0.05 Score=40.49 Aligned_cols=83 Identities=18% Similarity=0.283 Sum_probs=58.8
Q ss_pred chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHH----CCCCeEEEeeh-HHHHHhCCC------CCCeeEEE
Q 034578 4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKS----YPHIKGINFDL-QHVIATAPT------HEGVSHVG 72 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~----~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~ 72 (90)
+++.+.+++++..++...+....|+-+|+|-|-+..+..++ ...++.++++. |.++-.-+. ..||+++.
T Consensus 348 Yq~Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~~n~~~W~~~Vtii~ 427 (649)
T KOG0822|consen 348 YQQAILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQNRNFECWDNRVTIIS 427 (649)
T ss_pred HHHHHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhhhchhhhcCeeEEEe
Confidence 45666777777766311112567899999999988776654 35678999999 887654432 48999999
Q ss_pred ecCCCC-CC-c-ccEEE
Q 034578 73 GDMFDA-IP-N-ADAVF 86 (90)
Q Consensus 73 ~d~~~~-~p-~-~D~i~ 86 (90)
.|+.+. -| + +|+++
T Consensus 428 ~DMR~w~ap~eq~DI~V 444 (649)
T KOG0822|consen 428 SDMRKWNAPREQADIIV 444 (649)
T ss_pred ccccccCCchhhccchH
Confidence 999883 34 3 88864
No 244
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=95.53 E-value=0.01 Score=36.99 Aligned_cols=39 Identities=28% Similarity=0.453 Sum_probs=30.1
Q ss_pred EEeeh-HHHHHhCCCC---------CCeeEEEecCCC-CCCc--ccEEEeec
Q 034578 51 INFDL-QHVIATAPTH---------EGVSHVGGDMFD-AIPN--ADAVFMKV 89 (90)
Q Consensus 51 ~~~D~-p~~~~~a~~~---------~rv~~~~~d~~~-~~p~--~D~i~l~~ 89 (90)
+++|+ +.|++.|+++ .+++++.+|..+ +++. +|+|++..
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~ 52 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGY 52 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecc
Confidence 47898 9999987531 369999999977 5553 89998764
No 245
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=95.51 E-value=0.028 Score=36.86 Aligned_cols=55 Identities=18% Similarity=0.238 Sum_probs=32.7
Q ss_pred CCCeEEEecCCch---HHHHHHHHHC-CCCeEEEeeh-HHH-HHhCCCC----CCeeEEEecCCC
Q 034578 23 NIRSMVDVGGGTG---TVLAEIVKSY-PHIKGINFDL-QHV-IATAPTH----EGVSHVGGDMFD 77 (90)
Q Consensus 23 ~~~~vlDvG~G~G---~~~~~l~~~~-p~~~~~~~D~-p~~-~~~a~~~----~rv~~~~~d~~~ 77 (90)
++.+|+.+|.-.| .+...+++.+ ++.+++++|+ ... -..+.+. +|+++++||-.+
T Consensus 32 kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~a~e~hp~~~rI~~i~Gds~d 96 (206)
T PF04989_consen 32 KPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRKAIESHPMSPRITFIQGDSID 96 (206)
T ss_dssp --SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S-GGGG----TTEEEEES-SSS
T ss_pred CCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchHHHhhccccCceEEEECCCCC
Confidence 4789999997554 4555666666 8899999998 333 2333333 899999999865
No 246
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=95.47 E-value=0.027 Score=38.09 Aligned_cols=64 Identities=19% Similarity=0.146 Sum_probs=46.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--CC--eeEEEecCCC-CCCc--ccEEEe
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--EG--VSHVGGDMFD-AIPN--ADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--~r--v~~~~~d~~~-~~p~--~D~i~l 87 (90)
.....+|||||-|.+...+..+. --+.+-.|. -.|++.++.. +. ++...+|=.. ++.+ +|+++-
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~-vekli~~DtS~~M~~s~~~~qdp~i~~~~~v~DEE~Ldf~ens~DLiis 143 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEG-VEKLIMMDTSYDMIKSCRDAQDPSIETSYFVGDEEFLDFKENSVDLIIS 143 (325)
T ss_pred hCcceeecccchhhhhHHHHhcc-hhheeeeecchHHHHHhhccCCCceEEEEEecchhcccccccchhhhhh
Confidence 45789999999999999999986 456889998 7899988763 22 3344455322 3433 788764
No 247
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=95.45 E-value=0.077 Score=35.50 Aligned_cols=76 Identities=20% Similarity=0.281 Sum_probs=54.7
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCC---
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFD--- 77 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~--- 77 (90)
...+.+++.+. .+.++||.||-|-|.+...+.++-|..+ .+++- |.++++.+. .++|..+.|-+.+
T Consensus 89 piMha~A~ai~----tkggrvLnVGFGMgIidT~iQe~~p~~H-~IiE~hp~V~krmr~~gw~ek~nViil~g~WeDvl~ 163 (271)
T KOG1709|consen 89 PIMHALAEAIS----TKGGRVLNVGFGMGIIDTFIQEAPPDEH-WIIEAHPDVLKRMRDWGWREKENVIILEGRWEDVLN 163 (271)
T ss_pred HHHHHHHHHHh----hCCceEEEeccchHHHHHHHhhcCCcce-EEEecCHHHHHHHHhcccccccceEEEecchHhhhc
Confidence 34444444443 4678999999999999999888777665 55666 898888765 4788888887765
Q ss_pred CCCc--ccEEEe
Q 034578 78 AIPN--ADAVFM 87 (90)
Q Consensus 78 ~~p~--~D~i~l 87 (90)
.+|+ ||-|+.
T Consensus 164 ~L~d~~FDGI~y 175 (271)
T KOG1709|consen 164 TLPDKHFDGIYY 175 (271)
T ss_pred cccccCcceeEe
Confidence 3554 777653
No 248
>PF05206 TRM13: Methyltransferase TRM13; InterPro: IPR007871 This entry consists of eukaryotic and bacterial proteins that specifically methylates guanosine-4 in various tRNAs with a Gly(CCG), His or Pro signatures []. The alignment contains some conserved cysteines and histidines that might form a zinc binding site.; GO: 0008168 methyltransferase activity, 0008033 tRNA processing
Probab=95.44 E-value=0.071 Score=36.11 Aligned_cols=35 Identities=17% Similarity=0.290 Sum_probs=31.1
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-----CCCeEEEeeh
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSY-----PHIKGINFDL 55 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~-----p~~~~~~~D~ 55 (90)
+.+...+++.|||.|.++..+.+.. +..+++.+|.
T Consensus 16 l~~~~~~vEfGaGrg~LS~~v~~~~~~~~~~~~~~~lIDR 55 (259)
T PF05206_consen 16 LNPDSCFVEFGAGRGELSRWVAQALQEDKPSNSRFVLIDR 55 (259)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHhhhcccCCccEEEEec
Confidence 5667899999999999999999998 5678999996
No 249
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=95.41 E-value=0.12 Score=36.35 Aligned_cols=65 Identities=20% Similarity=0.203 Sum_probs=50.5
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC------CCeeEEEe-cCCC-CCCc--ccEEEe
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH------EGVSHVGG-DMFD-AIPN--ADAVFM 87 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~------~rv~~~~~-d~~~-~~p~--~D~i~l 87 (90)
......|+|==||||.++++...- ++++++.|+ ..|++.|+.+ +...+... |... ++++ .|.|..
T Consensus 195 v~~G~~vlDPFcGTGgiLiEagl~--G~~viG~Did~~mv~gak~Nl~~y~i~~~~~~~~~Da~~lpl~~~~vdaIat 270 (347)
T COG1041 195 VKRGELVLDPFCGTGGILIEAGLM--GARVIGSDIDERMVRGAKINLEYYGIEDYPVLKVLDATNLPLRDNSVDAIAT 270 (347)
T ss_pred cccCCEeecCcCCccHHHHhhhhc--CceEeecchHHHHHhhhhhhhhhhCcCceeEEEecccccCCCCCCccceEEe
Confidence 345579999999999999998775 789999999 8999998874 34445555 7776 6765 787753
No 250
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=95.38 E-value=0.051 Score=31.04 Aligned_cols=58 Identities=26% Similarity=0.378 Sum_probs=37.9
Q ss_pred EEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHHHHhCCCC---CC---eeEEEecCCC---CCC---cccEE
Q 034578 27 MVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHVIATAPTH---EG---VSHVGGDMFD---AIP---NADAV 85 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~~~~a~~~---~r---v~~~~~d~~~---~~p---~~D~i 85 (90)
++|+|||+|... .+....+. ..++++|. +.++..++.. .. +.+..+|... ++. .+|++
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 123 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGLVDFVVADALGGVLPFEDSASFDLV 123 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCceEEEEeccccCCCCCCCCCceeEE
Confidence 999999999977 44444333 47888998 7777664331 11 5777777664 333 26776
No 251
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=95.28 E-value=0.1 Score=35.05 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=40.0
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh--HHHHHhCCCCCCeeEEE
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL--QHVIATAPTHEGVSHVG 72 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~--p~~~~~a~~~~rv~~~~ 72 (90)
...++.+. ...+...+||+|..||.++.-++++- ..++.++|. .+..-.-|..+|+..+.
T Consensus 68 ~~ale~F~--l~~k~kv~LDiGsSTGGFTd~lLq~g-Ak~VyavDVG~~Ql~~kLR~d~rV~~~E 129 (245)
T COG1189 68 EKALEEFE--LDVKGKVVLDIGSSTGGFTDVLLQRG-AKHVYAVDVGYGQLHWKLRNDPRVIVLE 129 (245)
T ss_pred HHHHHhcC--cCCCCCEEEEecCCCccHHHHHHHcC-CcEEEEEEccCCccCHhHhcCCcEEEEe
Confidence 34455555 23467899999999999999999863 456889995 33333334455554444
No 252
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=95.19 E-value=0.037 Score=39.67 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=33.3
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhC
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATA 62 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a 62 (90)
+-+...++|+|.|.|+++..+.-.+ ++++.++|- ....++|
T Consensus 151 f~gi~~vvD~GaG~G~LSr~lSl~y-~lsV~aIegsq~~~~ra 192 (476)
T KOG2651|consen 151 FTGIDQVVDVGAGQGHLSRFLSLGY-GLSVKAIEGSQRLVERA 192 (476)
T ss_pred hcCCCeeEEcCCCchHHHHHHhhcc-CceEEEeccchHHHHHH
Confidence 5567899999999999999998877 688999996 4444444
No 253
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=95.16 E-value=0.23 Score=33.11 Aligned_cols=83 Identities=11% Similarity=0.141 Sum_probs=56.0
Q ss_pred hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HH----HHHhCCCCCCeeEEEecCCCC
Q 034578 5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QH----VIATAPTHEGVSHVGGDMFDA 78 (90)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~----~~~~a~~~~rv~~~~~d~~~~ 78 (90)
...++..++..++.-.+.+..+||-+|..+|.....+..-. |.-.+.+++. |. .+..|+++.|+--+-.|...|
T Consensus 55 RSKLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R~NIiPIl~DAr~P 134 (229)
T PF01269_consen 55 RSKLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKRPNIIPILEDARHP 134 (229)
T ss_dssp T-HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHSTTEEEEES-TTSG
T ss_pred hhHHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccCCceeeeeccCCCh
Confidence 34567777766652115667899999999999999999885 5889999998 64 466677778887777887763
Q ss_pred -----C-CcccEEEe
Q 034578 79 -----I-PNADAVFM 87 (90)
Q Consensus 79 -----~-p~~D~i~l 87 (90)
+ +..|+|+.
T Consensus 135 ~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 135 EKYRMLVEMVDVIFQ 149 (229)
T ss_dssp GGGTTTS--EEEEEE
T ss_pred HHhhcccccccEEEe
Confidence 2 23687764
No 254
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=95.03 E-value=0.025 Score=38.85 Aligned_cols=60 Identities=25% Similarity=0.279 Sum_probs=44.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCc--ccEEE
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPN--ADAVF 86 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~i~ 86 (90)
....++|+|||.|-+..- +|.+..++.|+ ...+..++..+.......|... +.++ +|..+
T Consensus 45 ~gsv~~d~gCGngky~~~----~p~~~~ig~D~c~~l~~~ak~~~~~~~~~ad~l~~p~~~~s~d~~l 108 (293)
T KOG1331|consen 45 TGSVGLDVGCGNGKYLGV----NPLCLIIGCDLCTGLLGGAKRSGGDNVCRADALKLPFREESFDAAL 108 (293)
T ss_pred CcceeeecccCCcccCcC----CCcceeeecchhhhhccccccCCCceeehhhhhcCCCCCCccccch
Confidence 357899999999987654 58889999999 7788887775543555678777 4433 66654
No 255
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.91 E-value=0.015 Score=41.32 Aligned_cols=65 Identities=23% Similarity=0.400 Sum_probs=41.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCe-EEEeeh-HHHHHhC---CC---CCCeeEEEecCCC---CCCcccEEEe
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIK-GINFDL-QHVIATA---PT---HEGVSHVGGDMFD---AIPNADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a---~~---~~rv~~~~~d~~~---~~p~~D~i~l 87 (90)
.+++|||+|.|+|.-+.++-.-||.++ ++.++. |..-+.. .+ ..+.-+-..|+.. ++|.+|.|.+
T Consensus 113 apqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~t~~td~r~s~vt~dRl~lp~ad~ytl 188 (484)
T COG5459 113 APQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVSTEKTDWRASDVTEDRLSLPAADLYTL 188 (484)
T ss_pred CcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcccccCCCCCCccchhccCCCccceeeh
Confidence 357899999999999999999999986 666776 4432221 11 1222333445544 4565666655
No 256
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=94.90 E-value=0.12 Score=35.53 Aligned_cols=54 Identities=19% Similarity=0.240 Sum_probs=36.6
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCC-CCCc--ccEEEee
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFD-AIPN--ADAVFMK 88 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~-~~p~--~D~i~l~ 88 (90)
+....|-|+|||.+.++.. ..-++..+|+-. .+-.++..|+.. |++. .|++++.
T Consensus 179 ~~~~vIaD~GCGEakiA~~-----~~~kV~SfDL~a--------~~~~V~~cDm~~vPl~d~svDvaV~C 235 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIASS-----ERHKVHSFDLVA--------VNERVIACDMRNVPLEDESVDVAVFC 235 (325)
T ss_pred cCceEEEecccchhhhhhc-----cccceeeeeeec--------CCCceeeccccCCcCccCcccEEEee
Confidence 3457899999999998871 224577788522 133456788877 6654 7887764
No 257
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=94.82 E-value=0.059 Score=35.90 Aligned_cols=37 Identities=16% Similarity=0.338 Sum_probs=27.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCC--------CeEEEeeh-HHHHH
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPH--------IKGINFDL-QHVIA 60 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~--------~~~~~~D~-p~~~~ 60 (90)
+-+|+++|+|+|.++..+++.... ++.+.+|. |...+
T Consensus 19 ~~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~ 64 (252)
T PF02636_consen 19 PLRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRE 64 (252)
T ss_dssp -EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHH
T ss_pred CcEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHH
Confidence 469999999999999998876543 48999998 66544
No 258
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.81 E-value=0.034 Score=39.81 Aligned_cols=70 Identities=16% Similarity=0.348 Sum_probs=50.2
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhC--C-------------CCCCeeEEEecCCCC------
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATA--P-------------THEGVSHVGGDMFDA------ 78 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a--~-------------~~~rv~~~~~d~~~~------ 78 (90)
..+.....|+|+|-|.+...++......+-+|+++ +..-+.+ + +...++.+.++|..+
T Consensus 190 ~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf~~~~~v~eI 269 (419)
T KOG3924|consen 190 LGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSFLDPKRVTEI 269 (419)
T ss_pred cCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeecccccCCHHHHHHH
Confidence 55678899999999999988888766666777775 3222211 1 125589999999873
Q ss_pred CCcccEEEeecC
Q 034578 79 IPNADAVFMKVA 90 (90)
Q Consensus 79 ~p~~D~i~l~~v 90 (90)
.+++++|+++++
T Consensus 270 ~~eatvi~vNN~ 281 (419)
T KOG3924|consen 270 QTEATVIFVNNV 281 (419)
T ss_pred hhcceEEEEecc
Confidence 245899998875
No 259
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=94.61 E-value=0.05 Score=36.21 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=32.6
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCC-C-eEEEeeh-HHHHHhCCC
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPH-I-KGINFDL-QHVIATAPT 64 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~-~-~~~~~D~-p~~~~~a~~ 64 (90)
..+-++.|=+||+|+++.-+.--++. + .+++.|+ +.+++.|++
T Consensus 50 ~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~k 95 (246)
T PF11599_consen 50 KGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARK 95 (246)
T ss_dssp -S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHH
T ss_pred CCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHH
Confidence 46679999999999998877766643 3 4888999 999988864
No 260
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=94.36 E-value=0.33 Score=32.65 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=38.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-----CCCeeEEEecCCCCCCc-----ccEEEe
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-----HEGVSHVGGDMFDAIPN-----ADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-----~~rv~~~~~d~~~~~p~-----~D~i~l 87 (90)
..++||=||= .=..+++++...+..+++++|+ +..++..++ .-+++.+..|+.+++|+ ||+++.
T Consensus 44 ~gk~il~lGD-DDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~i~~~~~DlR~~LP~~~~~~fD~f~T 118 (243)
T PF01861_consen 44 EGKRILFLGD-DDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLPIEAVHYDLRDPLPEELRGKFDVFFT 118 (243)
T ss_dssp TT-EEEEES--TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT--EEEE---TTS---TTTSS-BSEEEE
T ss_pred cCCEEEEEcC-CcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCceEEEEecccccCCHHHhcCCCEEEe
Confidence 3578999994 4456777777778889999999 777765543 34599999999998773 799874
No 261
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=94.13 E-value=0.24 Score=33.43 Aligned_cols=66 Identities=20% Similarity=0.130 Sum_probs=40.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC------------CCCeeEEEecCCCC------CCc-cc
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT------------HEGVSHVGGDMFDA------IPN-AD 83 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~------------~~rv~~~~~d~~~~------~p~-~D 83 (90)
...++|.+|+|+|..++..+. ....+++.-|.|..++.-+. .+.+....-++-.+ .|. +|
T Consensus 86 ~~~~vlELGsGtglvG~~aa~-~~~~~v~ltD~~~~~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~D 164 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAAL-LLGAEVVLTDLPKVVENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFD 164 (248)
T ss_pred cceeEEEecCCccHHHHHHHH-HhcceeccCCchhhHHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCccc
Confidence 356799999999966665555 45778888887655443221 12455544444431 233 68
Q ss_pred EEEeec
Q 034578 84 AVFMKV 89 (90)
Q Consensus 84 ~i~l~~ 89 (90)
+++.+.
T Consensus 165 lilasD 170 (248)
T KOG2793|consen 165 LILASD 170 (248)
T ss_pred EEEEee
Confidence 887764
No 262
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=94.02 E-value=0.13 Score=34.81 Aligned_cols=61 Identities=16% Similarity=0.184 Sum_probs=43.0
Q ss_pred eEEEecCCchHHHHHHHHHCCCCe-EEEeeh-HHHHHhCCCCCCeeEEEecCCC-C----CCcccEEEee
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIK-GINFDL-QHVIATAPTHEGVSHVGGDMFD-A----IPNADAVFMK 88 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~----~p~~D~i~l~ 88 (90)
+++|+-||.|.+...+.+.. .+ +.++|+ +.+++.-+.+-.-.++.+|+.+ . .+.+|+++.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G--~~~v~a~e~~~~a~~~~~~N~~~~~~~~Di~~~~~~~~~~~~D~l~~g 69 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAG--FEIVAANEIDKSAAETYEANFPNKLIEGDITKIDEKDFIPDIDLLTGG 69 (275)
T ss_pred cEEEEccCcchHHHHHHHcC--CEEEEEEeCCHHHHHHHHHhCCCCCccCccccCchhhcCCCCCEEEeC
Confidence 58999999999999998874 44 677998 8887766554212255677765 1 2348988765
No 263
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=93.40 E-value=0.13 Score=34.34 Aligned_cols=73 Identities=15% Similarity=0.222 Sum_probs=43.8
Q ss_pred HHHHhhcccCCCCCC--CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhC-------CC--------CCCeeEE
Q 034578 10 KAFVSHYKVDGFNNI--RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATA-------PT--------HEGVSHV 71 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~--~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a-------~~--------~~rv~~~ 71 (90)
+.+++... +.+. .+|||.=+|-|.=+.-++.. +.++++++. |.+.... .. ..|++++
T Consensus 63 ~~l~kA~G---lk~~~~~~VLDaTaGLG~Da~vlA~~--G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~ 137 (234)
T PF04445_consen 63 DPLAKAVG---LKPGMRPSVLDATAGLGRDAFVLASL--GCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLI 137 (234)
T ss_dssp SHHHHHTT----BTTB---EEETT-TTSHHHHHHHHH--T--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEE
T ss_pred cHHHHHhC---CCCCCCCEEEECCCcchHHHHHHHcc--CCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEE
Confidence 44555554 3322 48999999999988888764 678999998 6533222 11 1589999
Q ss_pred EecCCCCC--C--cccEEEe
Q 034578 72 GGDMFDAI--P--NADAVFM 87 (90)
Q Consensus 72 ~~d~~~~~--p--~~D~i~l 87 (90)
.+|..+.+ + .+|+|++
T Consensus 138 ~~d~~~~L~~~~~s~DVVY~ 157 (234)
T PF04445_consen 138 HGDALEYLRQPDNSFDVVYF 157 (234)
T ss_dssp ES-CCCHCCCHSS--SEEEE
T ss_pred cCCHHHHHhhcCCCCCEEEE
Confidence 99988843 2 2899987
No 264
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=93.38 E-value=0.035 Score=38.52 Aligned_cols=65 Identities=26% Similarity=0.425 Sum_probs=50.1
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCC-eEEEeeh-HHHHHhCCC----------CCCeeEEEecCCC---CCC--cccE
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHI-KGINFDL-QHVIATAPT----------HEGVSHVGGDMFD---AIP--NADA 84 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~-~~~~~D~-p~~~~~a~~----------~~rv~~~~~d~~~---~~p--~~D~ 84 (90)
..+..++-||+|.|-+.+...++ +.+ .+..+|+ ..+++..++ .+++.++.||-+. ..+ .+|+
T Consensus 120 ~npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dV 198 (337)
T KOG1562|consen 120 PNPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDV 198 (337)
T ss_pred CCCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceE
Confidence 35789999999999999999997 554 4677887 666666554 4889999999665 333 3899
Q ss_pred EEe
Q 034578 85 VFM 87 (90)
Q Consensus 85 i~l 87 (90)
|+.
T Consensus 199 ii~ 201 (337)
T KOG1562|consen 199 IIT 201 (337)
T ss_pred EEE
Confidence 885
No 265
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=93.37 E-value=0.16 Score=32.34 Aligned_cols=51 Identities=14% Similarity=0.126 Sum_probs=37.5
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP 63 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~ 63 (90)
.+.+.++..+. .+...|||-=||+|..+.+..+. +-+.+++|+ |..++.|+
T Consensus 179 ~l~~~lI~~~t----~~gdiVlDpF~GSGTT~~aa~~l--~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 179 ELIERLIKAST----NPGDIVLDPFAGSGTTAVAAEEL--GRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHHS-----TT-EEEETT-TTTHHHHHHHHT--T-EEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhhh----ccceeeehhhhccChHHHHHHHc--CCeEEEEeCCHHHHHHhc
Confidence 45666776665 34689999999999999998887 445999999 88877664
No 266
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=93.34 E-value=0.64 Score=32.76 Aligned_cols=67 Identities=12% Similarity=0.150 Sum_probs=47.1
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCC--CeEEEeeh-HHHHHhCCC------CCCeeEEEecCCC---CCC--c-ccEE
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPH--IKGINFDL-QHVIATAPT------HEGVSHVGGDMFD---AIP--N-ADAV 85 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~--~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~---~~p--~-~D~i 85 (90)
..+..+|||.+.+.|.=+..++..-++ ..++++|. +.-++..++ ..++..+..|... ..+ . ||.|
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~nv~~~~~d~~~~~~~~~~~~~fD~i 233 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRNVIVVNKDARRLAELLPGGEKFDRI 233 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCceEEEecccccccccccccCcCcEE
Confidence 556799999999999988888888765 66799998 655444433 2446777777543 122 2 7888
Q ss_pred Ee
Q 034578 86 FM 87 (90)
Q Consensus 86 ~l 87 (90)
++
T Consensus 234 Ll 235 (355)
T COG0144 234 LL 235 (355)
T ss_pred EE
Confidence 75
No 267
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=92.72 E-value=0.17 Score=35.58 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=45.5
Q ss_pred CCCCeEEEecC-CchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEec---CCCCCCc-ccEEEe
Q 034578 22 NNIRSMVDVGG-GTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGD---MFDAIPN-ADAVFM 87 (90)
Q Consensus 22 ~~~~~vlDvG~-G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d---~~~~~p~-~D~i~l 87 (90)
.+.++|+=+|. |-|++++.++++.- ++++++|. ++-.+.|++-..-.++... +.+.+.+ +|+++-
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~~~~~K~e~a~~lGAd~~i~~~~~~~~~~~~~~~d~ii~ 235 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMG-AEVIAITRSEEKLELAKKLGADHVINSSDSDALEAVKEIADAIID 235 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcC-CeEEEEeCChHHHHHHHHhCCcEEEEcCCchhhHHhHhhCcEEEE
Confidence 34566666665 57789999999775 99999999 8888888876555555543 3333333 788764
No 268
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=92.50 E-value=0.68 Score=29.36 Aligned_cols=55 Identities=24% Similarity=0.287 Sum_probs=39.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC----C-----CCeeEEEecCCC
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT----H-----EGVSHVGGDMFD 77 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~----~-----~rv~~~~~d~~~ 77 (90)
+...|+-+|||-=.....+....++.+..-+|+|++++.-++ . .+.+++..|+.+
T Consensus 78 ~~~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 141 (183)
T PF04072_consen 78 GARQVVNLGAGLDTRAYRLDNPAGGVRWFEVDLPEVIALKRRLLPESGARPPANYRYVPADLRD 141 (183)
T ss_dssp TESEEEEET-TT--HHHHHHHTTTTEEEEEEE-HHHHHHHHHHHHHTHHHHHEESSEEES-TTS
T ss_pred CCcEEEEcCCCCCchHHHhhccccceEEEEeCCHHHHHHHHHHHHhCcccCCcceeEEeccccc
Confidence 445899999999999999999888999999999988775433 1 236789999986
No 269
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=92.26 E-value=1.3 Score=29.41 Aligned_cols=72 Identities=10% Similarity=0.090 Sum_probs=53.0
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HH----HHHhCCCCCCeeEEEecCCC
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QH----VIATAPTHEGVSHVGGDMFD 77 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~----~~~~a~~~~rv~~~~~d~~~ 77 (90)
..++..++..++.--+++..+||=+|..+|.....+..-.+.-.+.+++. |. .+..+++++|+-=+-+|...
T Consensus 59 SKLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R~Ni~PIL~DA~~ 135 (231)
T COG1889 59 SKLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKRPNIIPILEDARK 135 (231)
T ss_pred hHHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhCCCceeeecccCC
Confidence 35677777766521156778999999999999999999988888899997 54 35566666666656666654
No 270
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=91.77 E-value=0.15 Score=36.00 Aligned_cols=55 Identities=22% Similarity=0.260 Sum_probs=41.6
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------C----CeeEEEecCCC
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------E----GVSHVGGDMFD 77 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~----rv~~~~~d~~~ 77 (90)
++...++|+|||-|.-++...++. --..+++|+ +..+++|+++ . .+.|+.+|-+.
T Consensus 116 ~~~~~~~~LgCGKGGDLlKw~kAg-I~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~ 183 (389)
T KOG1975|consen 116 KRGDDVLDLGCGKGGDLLKWDKAG-IGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFK 183 (389)
T ss_pred ccccccceeccCCcccHhHhhhhc-ccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccch
Confidence 356789999999999888877763 235899999 7788888761 2 36788888764
No 271
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=91.74 E-value=0.64 Score=28.32 Aligned_cols=57 Identities=30% Similarity=0.458 Sum_probs=31.9
Q ss_pred CCeEEEecCCchH-HHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCC----cccEEEe
Q 034578 24 IRSMVDVGGGTGT-VLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIP----NADAVFM 87 (90)
Q Consensus 24 ~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p----~~D~i~l 87 (90)
..++++||-|.=. .+..|.++ +..+++.|+ |. .++ ..+.++.-|.|+|-. .+|+|+.
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~--G~dV~~tDi~~~---~a~--~g~~~v~DDif~P~l~iY~~a~lIYS 76 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKER--GFDVIATDINPR---KAP--EGVNFVVDDIFNPNLEIYEGADLIYS 76 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHH--S-EEEEE-SS-S---------STTEE---SSS--HHHHTTEEEEEE
T ss_pred CCcEEEECcCCCHHHHHHHHHc--CCcEEEEECccc---ccc--cCcceeeecccCCCHHHhcCCcEEEE
Confidence 4699999999765 55555555 388999998 66 222 678899999999532 3788764
No 272
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=91.69 E-value=0.42 Score=33.43 Aligned_cols=39 Identities=23% Similarity=0.425 Sum_probs=33.8
Q ss_pred CCCCeEEEecCCchHHHHHHHHHC--CCCeEEEeehHHHHH
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDLQHVIA 60 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~p~~~~ 60 (90)
.....|+.+|||.-.+.-.|...+ +.++.+-+|.|..++
T Consensus 86 ~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~ 126 (335)
T KOG2918|consen 86 DGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVE 126 (335)
T ss_pred CCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHH
Confidence 356789999999999999999998 788899999977654
No 273
>PF02153 PDH: Prephenate dehydrogenase; InterPro: IPR003099 Members of this family are prephenate dehydrogenases 1.3.1.12 from EC involved in tyrosine biosynthesis. ; GO: 0004665 prephenate dehydrogenase (NADP+) activity, 0008977 prephenate dehydrogenase activity, 0006571 tyrosine biosynthetic process, 0055114 oxidation-reduction process; PDB: 2F1K_B 2PV7_A 3DZB_B 3KTD_B 3B1F_A 2G5C_D 3GGP_C 3GGG_C 3GGO_D.
Probab=91.27 E-value=0.13 Score=34.39 Aligned_cols=51 Identities=18% Similarity=0.298 Sum_probs=35.0
Q ss_pred HHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCCcccEEEee
Q 034578 37 VLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIPNADAVFMK 88 (90)
Q Consensus 37 ~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~l~ 88 (90)
++.+|.++.+..+++++|. +...+.+++.+-+.-...+ .+.+.++|+|+++
T Consensus 1 ~A~aL~~~g~~~~v~g~d~~~~~~~~a~~~g~~~~~~~~-~~~~~~~Dlvvla 52 (258)
T PF02153_consen 1 IALALRKAGPDVEVYGYDRDPETLEAALELGIIDEASTD-IEAVEDADLVVLA 52 (258)
T ss_dssp HHHHHHHTTTTSEEEEE-SSHHHHHHHHHTTSSSEEESH-HHHGGCCSEEEE-
T ss_pred ChHHHHhCCCCeEEEEEeCCHHHHHHHHHCCCeeeccCC-HhHhcCCCEEEEc
Confidence 5778899999999999999 8888888654444333333 2335568888875
No 274
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.03 E-value=0.35 Score=27.92 Aligned_cols=55 Identities=27% Similarity=0.298 Sum_probs=36.3
Q ss_pred CCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEe
Q 034578 32 GGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFM 87 (90)
Q Consensus 32 ~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l 87 (90)
||.|.++..+++.. .+.+++++|. |+.++.+++.. +.++.||..++ +..+|.++.
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~-~~~i~gd~~~~~~l~~a~i~~a~~vv~ 68 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG-VEVIYGDATDPEVLERAGIEKADAVVI 68 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT-SEEEES-TTSHHHHHHTTGGCESEEEE
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc-cccccccchhhhHHhhcCccccCEEEE
Confidence 45566666666553 3457999998 88887776555 78999999872 223776664
No 275
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=90.30 E-value=0.62 Score=32.53 Aligned_cols=33 Identities=21% Similarity=0.499 Sum_probs=25.8
Q ss_pred CeEEEecCCchHHHHHHHHHC--------------------CCCeEEEeeh-HH
Q 034578 25 RSMVDVGGGTGTVLAEIVKSY--------------------PHIKGINFDL-QH 57 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~--------------------p~~~~~~~D~-p~ 57 (90)
.+||-||||.|.=..+++..+ |.++++.+|+ ++
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdW 141 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADW 141 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecCh
Confidence 699999999998766666655 2368999997 54
No 276
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=89.90 E-value=0.43 Score=33.87 Aligned_cols=43 Identities=14% Similarity=0.299 Sum_probs=34.0
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchH----HHHHHHHHC---CCCeEEEeeh
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGT----VLAEIVKSY---PHIKGINFDL 55 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~---p~~~~~~~D~ 55 (90)
+.|++.+. -.+.-+|+|+|.|.|. +..+|+++. |.+++|+++.
T Consensus 100 qaIleA~~---g~~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~ 149 (374)
T PF03514_consen 100 QAILEAFE---GERRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGP 149 (374)
T ss_pred HHHHHHhc---cCcceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccC
Confidence 55667776 3456789999999987 777777764 7899999997
No 277
>PF14314 Methyltrans_Mon: Virus-capping methyltransferase
Probab=89.86 E-value=0.98 Score=34.64 Aligned_cols=48 Identities=19% Similarity=0.406 Sum_probs=39.4
Q ss_pred CCcchhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEE
Q 034578 1 MACTTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGIN 52 (90)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~ 52 (90)
+|.-++...+.|+..+. . .+.-.|-.|=|+|.++..+++.+|..+++.
T Consensus 304 ~ATGAHYKlRsIL~~~~---i-~~~d~l~~GDGSGGita~lLR~~p~sr~iF 351 (675)
T PF14314_consen 304 LATGAHYKLRSILKNLN---I-KYRDALCGGDGSGGITACLLRMNPTSRGIF 351 (675)
T ss_pred ccccchhhHHHHHHhcC---C-CcceeEEEecCchHHHHHHHHhCcccceee
Confidence 34557778888998887 3 346678999999999999999999999764
No 278
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=89.57 E-value=0.66 Score=35.44 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=30.1
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCe-EEEeeh
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIK-GINFDL 55 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~ 55 (90)
+.+...+||+||.+|....-.++..|--. ++++|+
T Consensus 42 l~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl 77 (780)
T KOG1098|consen 42 LEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDL 77 (780)
T ss_pred ccccchheeeccCCcHHHHHHHHhCCCCceEEEeee
Confidence 56678899999999999999999988544 788997
No 279
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=89.38 E-value=1.6 Score=30.60 Aligned_cols=45 Identities=20% Similarity=0.161 Sum_probs=35.3
Q ss_pred CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC
Q 034578 21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPTH 65 (90)
Q Consensus 21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~ 65 (90)
..+..+|+.+|+|+ |.++..++++....++++++. ++..+.+++.
T Consensus 182 ~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 182 VKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 44567899999998 999999999986546888887 7777766543
No 280
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=89.23 E-value=2.1 Score=27.82 Aligned_cols=62 Identities=16% Similarity=0.135 Sum_probs=38.9
Q ss_pred CCeEEEecCCchHHH--HHHHHHCCCCeEEEeeh---HHHHHhCCCCCCeeEEEecCCC-CCCcccEEEee
Q 034578 24 IRSMVDVGGGTGTVL--AEIVKSYPHIKGINFDL---QHVIATAPTHEGVSHVGGDMFD-AIPNADAVFMK 88 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~--~~l~~~~p~~~~~~~D~---p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l~ 88 (90)
..++|=||+|.=... ..|++. ++++++++. +...+.+ +..+++++.+++.. .+..+|+++.+
T Consensus 9 gk~vlVvGgG~va~rk~~~Ll~~--ga~VtVvsp~~~~~l~~l~-~~~~i~~~~~~~~~~dl~~~~lVi~a 76 (205)
T TIGR01470 9 GRAVLVVGGGDVALRKARLLLKA--GAQLRVIAEELESELTLLA-EQGGITWLARCFDADILEGAFLVIAA 76 (205)
T ss_pred CCeEEEECcCHHHHHHHHHHHHC--CCEEEEEcCCCCHHHHHHH-HcCCEEEEeCCCCHHHhCCcEEEEEC
Confidence 468999999964433 333333 456777763 3333333 34589999988865 35568888764
No 281
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=89.17 E-value=2.9 Score=25.31 Aligned_cols=58 Identities=28% Similarity=0.403 Sum_probs=40.4
Q ss_pred CCCeEEEecCCchH-HHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-CC---cccEEEe
Q 034578 23 NIRSMVDVGGGTGT-VLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-IP---NADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~-~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-~p---~~D~i~l 87 (90)
..++|++||-|.=. .+..|+++ +..+++.|+ +. .++ .-++++.-|.++| +. .+|+|+.
T Consensus 13 ~~gkVvEVGiG~~~~VA~~L~e~--g~dv~atDI~~~---~a~--~g~~~v~DDitnP~~~iY~~A~lIYS 76 (129)
T COG1255 13 ARGKVVEVGIGFFLDVAKRLAER--GFDVLATDINEK---TAP--EGLRFVVDDITNPNISIYEGADLIYS 76 (129)
T ss_pred cCCcEEEEccchHHHHHHHHHHc--CCcEEEEecccc---cCc--ccceEEEccCCCccHHHhhCccceee
Confidence 45699999998766 44555554 377899998 55 333 5688999999985 22 3787763
No 282
>PF06690 DUF1188: Protein of unknown function (DUF1188); InterPro: IPR009573 This family consists of several hypothetical archaeal proteins of around 260 residues in length, which seem to be specific to Methanobacterium, Methanococcus and Methanopyrus species. The function of this family is unknown.
Probab=89.02 E-value=4.2 Score=27.51 Aligned_cols=73 Identities=12% Similarity=0.144 Sum_probs=45.4
Q ss_pred hhhhHHHHHhhcccCCCCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCCc-
Q 034578 5 TKITMKAFVSHYKVDGFNNIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIPN- 81 (90)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p~- 81 (90)
++..++++..-++ -....++|=+|+= +|.+....+...- +++.+|+ |++.+.. ++++.|... ..+.+.
T Consensus 26 ~ekKa~ai~~~le---~~~~k~~lI~G~YltG~~iA~~L~~~~--eV~lvDI~p~lk~ll--~~~i~F~~~--~~~~~~~ 96 (252)
T PF06690_consen 26 AEKKANAIKYWLE---GEEFKQALIFGAYLTGNFIASALSKKC--EVTLVDIHPHLKELL--NENIKFMEF--RNGLEGN 96 (252)
T ss_pred HHHHHHHHHHHhc---ccccceEEEEEEEeehHHHHHHhccCc--eEEEEeCcHHHHHHh--cCCCceeec--cCCCCCC
Confidence 3444555555555 2334588888873 6776666555432 8999999 8887765 567777732 223333
Q ss_pred ccEEE
Q 034578 82 ADAVF 86 (90)
Q Consensus 82 ~D~i~ 86 (90)
+|+|+
T Consensus 97 ~DlII 101 (252)
T PF06690_consen 97 PDLII 101 (252)
T ss_pred CCEEE
Confidence 77775
No 283
>PRK11524 putative methyltransferase; Provisional
Probab=88.95 E-value=1.2 Score=30.26 Aligned_cols=52 Identities=19% Similarity=0.047 Sum_probs=39.4
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT 64 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 64 (90)
.+.+.++..+. .....|||-=+|||..+.+..+. +=+.+++|+ |+-++.|++
T Consensus 196 ~L~erlI~~~S----~~GD~VLDPF~GSGTT~~AA~~l--gR~~IG~Ei~~~Y~~~a~~ 248 (284)
T PRK11524 196 ALLKRIILASS----NPGDIVLDPFAGSFTTGAVAKAS--GRKFIGIEINSEYIKMGLR 248 (284)
T ss_pred HHHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHc--CCCEEEEeCCHHHHHHHHH
Confidence 34556666554 35689999999999999988876 456899998 887776654
No 284
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=88.60 E-value=3.5 Score=28.14 Aligned_cols=67 Identities=10% Similarity=0.041 Sum_probs=48.6
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCC-CCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCC----CCc-ccEEEe
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDA----IPN-ADAVFM 87 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~----~p~-~D~i~l 87 (90)
..+..+|||.++++|.=+..++...+ ...+++.|+ ++-++..++ ..++.....|..+. .+. +|.|++
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~v~~~~~D~~~~~~~~~~~~fd~Vlv 162 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFNVIVINADARKLDPKKPESKFDRVLV 162 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SSEEEEESHHHHHHHHHHTTTEEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCceEEEEeeccccccccccccccchhhc
Confidence 44567899999999999999998876 788999998 665554433 25677776776542 233 788775
No 285
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=88.56 E-value=1.1 Score=27.01 Aligned_cols=32 Identities=22% Similarity=0.259 Sum_probs=19.8
Q ss_pred EecCCch--HHHHHHH--HHCCCCeEEEeeh-HHHHH
Q 034578 29 DVGGGTG--TVLAEIV--KSYPHIKGINFDL-QHVIA 60 (90)
Q Consensus 29 DvG~G~G--~~~~~l~--~~~p~~~~~~~D~-p~~~~ 60 (90)
|||+..| ....... +..|..+++++|. |...+
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~ 37 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFE 37 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHH
Confidence 8999999 6555554 4578999999997 76543
No 286
>PF12692 Methyltransf_17: S-adenosyl-L-methionine methyltransferase; PDB: 3IHT_B.
Probab=88.55 E-value=2.5 Score=26.69 Aligned_cols=45 Identities=13% Similarity=0.181 Sum_probs=29.5
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
..-+++++.... -..-|+|+|=|+|..-..|.+.+|+-++.++|.
T Consensus 16 ~~L~~a~~~v~~----~~G~VlElGLGNGRTydHLRe~~p~R~I~vfDR 60 (160)
T PF12692_consen 16 DCLNWAAAQVAG----LPGPVLELGLGNGRTYDHLREIFPDRRIYVFDR 60 (160)
T ss_dssp HHHHHHHHHTTT------S-EEEE--TTSHHHHHHHHH--SS-EEEEES
T ss_pred HHHHHHHHHhcC----CCCceEEeccCCCccHHHHHHhCCCCeEEEEee
Confidence 334455555552 247799999999999999999999999999994
No 287
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=88.06 E-value=0.48 Score=31.93 Aligned_cols=53 Identities=19% Similarity=0.158 Sum_probs=43.8
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT 64 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 64 (90)
...+++.+. .-+.++.+|.--|+|..+..+++.+|.++..++|. |-+-+.|+.
T Consensus 32 ~devl~~ls---pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~ 85 (303)
T KOG2782|consen 32 LDEVLDILS---PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHF 85 (303)
T ss_pred hhhHHHHcC---CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHH
Confidence 345566665 44668999999999999999999999999999999 888777753
No 288
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=87.82 E-value=0.79 Score=31.55 Aligned_cols=36 Identities=11% Similarity=0.058 Sum_probs=28.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHH
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVI 59 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~ 59 (90)
...+|||+|||+|.-.+......- .++..+|. ..++
T Consensus 116 ~~k~vLELgCg~~Lp~i~~~~~~~-~~~~fqD~na~vl 152 (282)
T KOG2920|consen 116 SGKRVLELGCGAALPGIFAFVKGA-VSVHFQDFNAEVL 152 (282)
T ss_pred cCceeEecCCcccccchhhhhhcc-ceeeeEecchhhe
Confidence 468999999999998888877642 77888887 4544
No 289
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=87.41 E-value=1.2 Score=32.84 Aligned_cols=54 Identities=17% Similarity=0.119 Sum_probs=38.8
Q ss_pred hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC----CCeEEEeeh-HHHHHhCCC
Q 034578 8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP----HIKGINFDL-QHVIATAPT 64 (90)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-p~~~~~a~~ 64 (90)
+.+-+++.+. .....+|.|-.||+|.+.....+... +....++|+ +.+...++.
T Consensus 174 v~~liv~~l~---~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~m 232 (489)
T COG0286 174 VSELIVELLD---PEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKM 232 (489)
T ss_pred HHHHHHHHcC---CCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHH
Confidence 3444455554 34556999999999998887776653 377899998 777776654
No 290
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=87.39 E-value=0.54 Score=33.71 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=24.2
Q ss_pred CCCeEEEecCCchHHHHH--------HHHH-------CCCCeEEEeehHH
Q 034578 23 NIRSMVDVGGGTGTVLAE--------IVKS-------YPHIKGINFDLQH 57 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~--------l~~~-------~p~~~~~~~D~p~ 57 (90)
+.-+|+|+|||+|..+.. +.++ -|..++..=|+|.
T Consensus 63 ~~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~ 112 (386)
T PLN02668 63 VPFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPS 112 (386)
T ss_pred cceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCC
Confidence 356899999999965433 2232 3568888888763
No 291
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=87.33 E-value=2 Score=29.37 Aligned_cols=65 Identities=17% Similarity=0.059 Sum_probs=35.5
Q ss_pred CCeEEEecCCc--hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCCcccEEEee
Q 034578 24 IRSMVDVGGGT--GTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIPNADAVFMK 88 (90)
Q Consensus 24 ~~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~l~ 88 (90)
..+|.=||+|. +.++..+.+.....+++++|. ++..+.+++.+-......+..+.+..+|+|++.
T Consensus 6 ~~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~g~~~~~~~~~~~~~~~aDvViia 73 (307)
T PRK07502 6 FDRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARARELGLGDRVTTSAAEAVKGADLVILC 73 (307)
T ss_pred CcEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhCCCCceecCCHHHHhcCCCEEEEC
Confidence 35788888774 334455554433347899998 776666554321111112221223458888764
No 292
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=87.04 E-value=3.7 Score=22.91 Aligned_cols=35 Identities=17% Similarity=0.384 Sum_probs=22.4
Q ss_pred CCCCCeEEEecCCchH-HHHHHHHHC-CCCeEEEeeh
Q 034578 21 FNNIRSMVDVGGGTGT-VLAEIVKSY-PHIKGINFDL 55 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~-~~~~l~~~~-p~~~~~~~D~ 55 (90)
.++++++|-+|+.+|. ++.+++..| -++..+++-.
T Consensus 36 ~~GpK~VLViGaStGyGLAsRIa~aFg~gA~TiGV~f 72 (78)
T PF12242_consen 36 INGPKKVLVIGASTGYGLASRIAAAFGAGADTIGVSF 72 (78)
T ss_dssp -TS-SEEEEES-SSHHHHHHHHHHHHCC--EEEEEE-
T ss_pred CCCCceEEEEecCCcccHHHHHHHHhcCCCCEEEEee
Confidence 4667899999999998 887788875 3455555443
No 293
>KOG2666 consensus UDP-glucose/GDP-mannose dehydrogenase [Carbohydrate transport and metabolism; Signal transduction mechanisms]
Probab=86.72 E-value=1 Score=32.04 Aligned_cols=63 Identities=25% Similarity=0.318 Sum_probs=41.0
Q ss_pred eEEEecCC--chHHHHHHHHHCCCCeEEEeeh--HHHHHhCCC----------------CCCeeEEEecCCCCCCcccEE
Q 034578 26 SMVDVGGG--TGTVLAEIVKSYPHIKGINFDL--QHVIATAPT----------------HEGVSHVGGDMFDAIPNADAV 85 (90)
Q Consensus 26 ~vlDvG~G--~G~~~~~l~~~~p~~~~~~~D~--p~~~~~a~~----------------~~rv~~~~~d~~~~~p~~D~i 85 (90)
.|+-+|.| -|-...-++..+|++.++.+|+ |..-+.-.. +++--|+..|..+.+.++|+|
T Consensus 3 kiccigagyvggptcavia~kcp~i~vtvvd~s~~ri~~wnsd~lpiyepgldevv~~crgknlffstdiekai~eadlv 82 (481)
T KOG2666|consen 3 KICCIGAGYVGGPTCAVIALKCPDIEVTVVDISVPRINAWNSDKLPIYEPGLDEVVKQCRGKNLFFSTDIEKAIKEADLV 82 (481)
T ss_pred eEEEecCcccCCcchheeeecCCceEEEEEecCchHhhcccCCCCcccCCCHHHHHHHhcCCceeeecchHHHhhhcceE
Confidence 57777777 3556667778899999999997 332221111 234445566665556678999
Q ss_pred Eee
Q 034578 86 FMK 88 (90)
Q Consensus 86 ~l~ 88 (90)
+.+
T Consensus 83 fis 85 (481)
T KOG2666|consen 83 FIS 85 (481)
T ss_pred EEE
Confidence 876
No 294
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=86.64 E-value=2.8 Score=28.73 Aligned_cols=64 Identities=17% Similarity=0.109 Sum_probs=41.0
Q ss_pred CeEEEecCC--chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecC-CCCCCcccEEEee
Q 034578 25 RSMVDVGGG--TGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDM-FDAIPNADAVFMK 88 (90)
Q Consensus 25 ~~vlDvG~G--~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~-~~~~p~~D~i~l~ 88 (90)
.+|+=+|.| -|+++..+.++.+...+++.|. ....+.+.+.+-+.-...+. ......+|+|+++
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lgv~d~~~~~~~~~~~~~aD~Viva 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELGVIDELTVAGLAEAAAEADLVIVA 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcCcccccccchhhhhcccCCEEEEe
Confidence 456666766 5778888888888888999998 66666665432111112222 2344557888875
No 295
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.54 E-value=0.078 Score=34.00 Aligned_cols=65 Identities=17% Similarity=0.155 Sum_probs=43.7
Q ss_pred CCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC---------CCCeeEEEecCCCC--C-C--cccEEEe
Q 034578 24 IRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPT---------HEGVSHVGGDMFDA--I-P--NADAVFM 87 (90)
Q Consensus 24 ~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~~~d~~~~--~-p--~~D~i~l 87 (90)
..+||++|+| +|.-++.++...|...+..-|- +..++.-++ ..+++.+..+.... . . .||+|+.
T Consensus 30 g~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIla 109 (201)
T KOG3201|consen 30 GRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIILA 109 (201)
T ss_pred HHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEEe
Confidence 4689999999 5666777788889999999996 665554432 24555555555542 1 1 2788876
Q ss_pred e
Q 034578 88 K 88 (90)
Q Consensus 88 ~ 88 (90)
+
T Consensus 110 A 110 (201)
T KOG3201|consen 110 A 110 (201)
T ss_pred c
Confidence 4
No 296
>PRK13699 putative methylase; Provisional
Probab=86.47 E-value=2.1 Score=28.27 Aligned_cols=51 Identities=12% Similarity=0.260 Sum_probs=38.1
Q ss_pred hHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578 8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT 64 (90)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 64 (90)
+.+.++..+. .+...|||-=||+|..+.+..+. +-+.+++|+ |+-.+.+.+
T Consensus 152 l~~~~i~~~s----~~g~~vlDpf~Gsgtt~~aa~~~--~r~~~g~e~~~~y~~~~~~ 203 (227)
T PRK13699 152 SLQPLIESFT----HPNAIVLDPFAGSGSTCVAALQS--GRRYIGIELLEQYHRAGQQ 203 (227)
T ss_pred HHHHHHHHhC----CCCCEEEeCCCCCCHHHHHHHHc--CCCEEEEecCHHHHHHHHH
Confidence 4455665554 25678999999999999988876 456899998 877666643
No 297
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=86.36 E-value=4 Score=25.38 Aligned_cols=62 Identities=10% Similarity=0.109 Sum_probs=35.4
Q ss_pred CCCeEEEecCCchHH--HHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCC-CCCcccEEEe
Q 034578 23 NIRSMVDVGGGTGTV--LAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFD-AIPNADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~--~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l 87 (90)
...+++=||||.=.. +..|.+. +.+++.++ |+..+..++.+.+++....+.+ .+..+|+++.
T Consensus 12 ~~~~vlVvGGG~va~rka~~Ll~~--ga~V~VIs-p~~~~~l~~l~~i~~~~~~~~~~dl~~a~lVia 76 (157)
T PRK06719 12 HNKVVVIIGGGKIAYRKASGLKDT--GAFVTVVS-PEICKEMKELPYITWKQKTFSNDDIKDAHLIYA 76 (157)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC--CCEEEEEc-CccCHHHHhccCcEEEecccChhcCCCceEEEE
Confidence 457899999985443 3344443 45666665 3322222223456666665554 4566888875
No 298
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=86.20 E-value=0.41 Score=32.03 Aligned_cols=39 Identities=13% Similarity=0.281 Sum_probs=27.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCC
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAP 63 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~ 63 (90)
.+.++||+|.|.|.++..++..+.+ +.+-++ ..|..+-+
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~fee--vyATElS~tMr~rL~ 151 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEE--VYATELSWTMRDRLK 151 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHH--HHHHHhhHHHHHHHh
Confidence 4579999999999999988877655 334444 44555444
No 299
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.08 E-value=1.8 Score=30.61 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=38.4
Q ss_pred CCCCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578 21 FNNIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPT 64 (90)
Q Consensus 21 ~~~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 64 (90)
.....++|-+|+| .|.++...++.+-..++++.|+ +.-++.|++
T Consensus 167 vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 167 VKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred cccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 4456799999999 5888888899999999999999 999999887
No 300
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=85.10 E-value=3.7 Score=25.25 Aligned_cols=53 Identities=28% Similarity=0.353 Sum_probs=36.4
Q ss_pred CCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC------CCcccEEEe
Q 034578 32 GGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA------IPNADAVFM 87 (90)
Q Consensus 32 ~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~------~p~~D~i~l 87 (90)
||||.++..++++. .+.+++++-. ++-.+. ..+++++.+|++++ +.++|.++.
T Consensus 5 GatG~vG~~l~~~L~~~~~~V~~~~R~~~~~~~---~~~~~~~~~d~~d~~~~~~al~~~d~vi~ 66 (183)
T PF13460_consen 5 GATGFVGRALAKQLLRRGHEVTALVRSPSKAED---SPGVEIIQGDLFDPDSVKAALKGADAVIH 66 (183)
T ss_dssp TTTSHHHHHHHHHHHHTTSEEEEEESSGGGHHH---CTTEEEEESCTTCHHHHHHHHTTSSEEEE
T ss_pred CCCChHHHHHHHHHHHCCCEEEEEecCchhccc---ccccccceeeehhhhhhhhhhhhcchhhh
Confidence 55777777666653 3478888876 554443 67899999999883 224787775
No 301
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=84.99 E-value=0.82 Score=32.51 Aligned_cols=63 Identities=19% Similarity=0.169 Sum_probs=45.5
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC-CCCc--ccEEEe
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFD-AIPN--ADAVFM 87 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~-~~p~--~D~i~l 87 (90)
...++|+|||-|.....+.. +.....+++|. +.-+.++.. ..+..++.+|+.+ +.++ +|.+.+
T Consensus 111 ~~~~~~~~~g~~~~~~~i~~-f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ 184 (364)
T KOG1269|consen 111 GSKVLDVGTGVGGPSRYIAV-FKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRF 184 (364)
T ss_pred cccccccCcCcCchhHHHHH-hccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEE
Confidence 34788999999999998877 56788899997 655444432 3455668889888 4554 777654
No 302
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=84.43 E-value=1.9 Score=29.08 Aligned_cols=53 Identities=23% Similarity=0.255 Sum_probs=38.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCC-CCeEEEeehHHHHHhCCC---------CCCeeEEEecCCC
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYP-HIKGINFDLQHVIATAPT---------HEGVSHVGGDMFD 77 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p-~~~~~~~D~p~~~~~a~~---------~~rv~~~~~d~~~ 77 (90)
+...|+.+|||-=.-...+. +| ++++.-+|+|++++.-++ ..+.+++..|+.+
T Consensus 81 g~~qvV~LGaGlDTr~~Rl~--~~~~~~~~EvD~P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~ 143 (260)
T TIGR00027 81 GIRQVVILGAGLDTRAYRLP--WPDGTRVFEVDQPAVLAFKEKVLAELGAEPPAHRRAVPVDLRQ 143 (260)
T ss_pred CCcEEEEeCCccccHHHhcC--CCCCCeEEECCChHHHHHHHHHHHHcCCCCCCceEEeccCchh
Confidence 45679999999887777663 33 578888888987764221 3678999999863
No 303
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=84.33 E-value=1.9 Score=30.15 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=36.2
Q ss_pred CCCCCeEEEecCCchHHHHHHH--------HHC--------CCCeEEEeehHH-----HHH---hCC----CCCC--eeE
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIV--------KSY--------PHIKGINFDLQH-----VIA---TAP----THEG--VSH 70 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~--------~~~--------p~~~~~~~D~p~-----~~~---~a~----~~~r--v~~ 70 (90)
..+.-+|+|+||.+|..+..+. +++ |..++..-|+|. ..+ .-. ...+ +.-
T Consensus 14 ~~~~~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~~~f~~g 93 (334)
T PF03492_consen 14 NPKPFRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFRNYFVSG 93 (334)
T ss_dssp TTTEEEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTTSEEEEE
T ss_pred CCCceEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCceEEEEe
Confidence 4466799999999998665443 222 456888889864 111 000 0122 556
Q ss_pred EEecCCCC-CCc--ccEEEee
Q 034578 71 VGGDMFDA-IPN--ADAVFMK 88 (90)
Q Consensus 71 ~~~d~~~~-~p~--~D~i~l~ 88 (90)
++|+|+.. +|. .|+++.+
T Consensus 94 vpgSFy~rLfP~~Svh~~~Ss 114 (334)
T PF03492_consen 94 VPGSFYGRLFPSNSVHFGHSS 114 (334)
T ss_dssp EES-TTS--S-TT-EEEEEEE
T ss_pred cCchhhhccCCCCceEEEEEe
Confidence 67899985 464 6776654
No 304
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=84.21 E-value=2.5 Score=28.49 Aligned_cols=59 Identities=15% Similarity=0.140 Sum_probs=32.2
Q ss_pred EEEecCCc--hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCCcccEEEee
Q 034578 27 MVDVGGGT--GTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIPNADAVFMK 88 (90)
Q Consensus 27 vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~l~ 88 (90)
|.=||+|. |.++..+.++ +.+++++|. ++..+.+.+.+.+.....+. +.+..+|+|++.
T Consensus 3 I~IIG~G~mG~sla~~L~~~--g~~V~~~d~~~~~~~~a~~~g~~~~~~~~~-~~~~~aDlVila 64 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSL--GHTVYGVSRRESTCERAIERGLVDEASTDL-SLLKDCDLVILA 64 (279)
T ss_pred EEEEeecHHHHHHHHHHHHC--CCEEEEEECCHHHHHHHHHCCCcccccCCH-hHhcCCCEEEEc
Confidence 55567653 3455555443 457999998 77776655433222221221 223447888764
No 305
>PHA01634 hypothetical protein
Probab=83.81 E-value=1.9 Score=26.73 Aligned_cols=41 Identities=10% Similarity=0.053 Sum_probs=32.4
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT 64 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 64 (90)
...+|+|||++-|.-++.++.+. .-++++++. |...+..++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~G-AK~Vva~E~~~kl~k~~ee 69 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRG-ASFVVQYEKEEKLRKKWEE 69 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcC-ccEEEEeccCHHHHHHHHH
Confidence 35799999999999999998864 345888997 777766654
No 306
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=83.37 E-value=4.4 Score=26.94 Aligned_cols=65 Identities=11% Similarity=0.186 Sum_probs=42.2
Q ss_pred CCCeEEEecCCchHHH--HHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCcccEEEee
Q 034578 23 NIRSMVDVGGGTGTVL--AEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPNADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~--~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l~ 88 (90)
+..+||=||||.=..- ..|++...+++++.-++ |+..+.+ +.++++++..+|.. .+..+++|+..
T Consensus 24 ~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~i~~el~~l~-~~~~i~~~~r~~~~~dl~g~~LViaA 92 (223)
T PRK05562 24 NKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKKFSKEFLDLK-KYGNLKLIKGNYDKEFIKDKHLIVIA 92 (223)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCCCHHHHHHH-hCCCEEEEeCCCChHHhCCCcEEEEC
Confidence 3468999999987754 23444444555555566 6655543 35679999887755 45567877753
No 307
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=82.94 E-value=4.5 Score=28.82 Aligned_cols=61 Identities=16% Similarity=0.163 Sum_probs=41.0
Q ss_pred eEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEee
Q 034578 26 SMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFMK 88 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l~ 88 (90)
+++=+|+ |.++..+++.. .+.+++++|. ++.++..++...+.++.||..++ +..+|.+++.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRLDVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhcCEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 3555555 67777777653 3567899998 77777665544578888998762 2347877753
No 308
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=82.91 E-value=8.1 Score=25.03 Aligned_cols=63 Identities=16% Similarity=0.158 Sum_probs=35.9
Q ss_pred CCCeEEEecCCchHH--HHHHHHHCCCCeEEEee--h-HHHHHhCCCCCCeeEEEecCCC-CCCcccEEEee
Q 034578 23 NIRSMVDVGGGTGTV--LAEIVKSYPHIKGINFD--L-QHVIATAPTHEGVSHVGGDMFD-AIPNADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~--~~~l~~~~p~~~~~~~D--~-p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l~ 88 (90)
...++|=||+|.=.. +..|.+. +.+++.++ . +...+.+. ..++.+....+.+ .+..+|+++..
T Consensus 9 ~~k~vLVIGgG~va~~ka~~Ll~~--ga~V~VIs~~~~~~l~~l~~-~~~i~~~~~~~~~~~l~~adlViaa 77 (202)
T PRK06718 9 SNKRVVIVGGGKVAGRRAITLLKY--GAHIVVISPELTENLVKLVE-EGKIRWKQKEFEPSDIVDAFLVIAA 77 (202)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC--CCeEEEEcCCCCHHHHHHHh-CCCEEEEecCCChhhcCCceEEEEc
Confidence 357899999974332 2334443 35666665 3 33333332 3567776665554 45668888753
No 309
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=82.65 E-value=4.7 Score=28.06 Aligned_cols=44 Identities=18% Similarity=0.172 Sum_probs=31.7
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchH----HHHHHHHHCCCCeEEEeeh
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGT----VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~p~~~~~~~D~ 55 (90)
..++.|.+..+ ..-..+-.|.|||- ++..|.+++|+++++++|.
T Consensus 157 tT~~EI~~~~~-----g~~d~fVagvGTGGTitGvar~Lk~~~p~i~iv~vdP 204 (300)
T COG0031 157 TTGPEIWQQTD-----GKVDAFVAGVGTGGTITGVARYLKERNPNVRIVAVDP 204 (300)
T ss_pred hhHHHHHHHhC-----CCCCEEEEeCCcchhHHHHHHHHHhhCCCcEEEEECC
Confidence 44556665555 12345667777776 7788889999999999995
No 310
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=82.43 E-value=3.9 Score=27.44 Aligned_cols=48 Identities=15% Similarity=0.169 Sum_probs=33.5
Q ss_pred hhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
|+.+.+.-.+.+.+ .. ...|+=||+|...+..++..+.++.+++.+|.
T Consensus 9 ~~~~~~~~~~~~~~--~~-~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk 56 (257)
T PRK04176 9 TRAIVEEYFEKLLD--YL-EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFER 56 (257)
T ss_pred HHHHHHHHHHHHHH--hc-cCCEEEECccHHHHHHHHHHHhCCCeEEEEec
Confidence 44444444444442 22 24588899999888888777778999999995
No 311
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=82.24 E-value=0.49 Score=34.55 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=42.2
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC--------CCeeEEEecC
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH--------EGVSHVGGDM 75 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~--------~rv~~~~~d~ 75 (90)
+.....|+|+-||-|-+++.++++. +++++.|+ |++++.-+.+ .+++.+..|.
T Consensus 247 fk~gevv~D~FaGvGPfa~Pa~kK~--crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda 308 (495)
T KOG2078|consen 247 FKPGEVVCDVFAGVGPFALPAAKKG--CRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDA 308 (495)
T ss_pred cCCcchhhhhhcCcCccccchhhcC--cEEEecCCCHHHHHHHHHhccccccchhheeeecccH
Confidence 4567899999999999999998875 99999999 9998876541 3477666553
No 312
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=82.19 E-value=2.5 Score=29.51 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=35.8
Q ss_pred CeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578 25 RSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPT 64 (90)
Q Consensus 25 ~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 64 (90)
.+++=+|+|+ |.++..+++.+...++++.|. +.-++.|++
T Consensus 170 ~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 170 GTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 4899999994 888899999999999999999 898888876
No 313
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=82.02 E-value=3.6 Score=29.34 Aligned_cols=42 Identities=19% Similarity=0.378 Sum_probs=28.5
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCch-----HHHHHHHHHCCCCeEEEe
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTG-----TVLAEIVKSYPHIKGINF 53 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G-----~~~~~l~~~~p~~~~~~~ 53 (90)
+..++..+. +.+...+-.+||||| .++..+..+||+.....+
T Consensus 90 r~~~E~cd~--l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~ 136 (379)
T cd02190 90 RKAAEKCDS--LQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVT 136 (379)
T ss_pred HHHHhhCcC--cceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEE
Confidence 344455553 556678999999998 466677778887654444
No 314
>PRK09273 hypothetical protein; Provisional
Probab=81.03 E-value=2.5 Score=27.97 Aligned_cols=41 Identities=17% Similarity=0.024 Sum_probs=30.2
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT 64 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~ 64 (90)
.....=++||||.=....+.++|++++-.+--|.....+++
T Consensus 63 ~~d~GIliCGTGiG~siAANK~pGIraalc~d~~sA~lar~ 103 (211)
T PRK09273 63 AVDFVVTGCGTGQGAMLALNSFPGVVCGYCIDPTDAYLFAQ 103 (211)
T ss_pred CCCEEEEEcCcHHHHHHHHhcCCCeEEEEeCCHHHHHHHHH
Confidence 34567789999998888888899998644433666666666
No 315
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=80.93 E-value=1.8 Score=26.82 Aligned_cols=40 Identities=23% Similarity=0.352 Sum_probs=28.3
Q ss_pred eEEEeeh-HHHHHhCCC-------CCCeeEEEecCCC---CCCc--ccEEEee
Q 034578 49 KGINFDL-QHVIATAPT-------HEGVSHVGGDMFD---AIPN--ADAVFMK 88 (90)
Q Consensus 49 ~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~---~~p~--~D~i~l~ 88 (90)
++.++|+ +++++.+++ .+|++++..+-.. .+++ .|+++++
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iFN 53 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIFN 53 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEEE
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEEE
Confidence 5789999 999998875 2689998776543 2443 7888876
No 316
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=80.55 E-value=3.6 Score=29.31 Aligned_cols=62 Identities=19% Similarity=0.186 Sum_probs=41.8
Q ss_pred CCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCC-CCeeEEEecCCCC-------CCcccEEEe
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTH-EGVSHVGGDMFDA-------IPNADAVFM 87 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~-~rv~~~~~d~~~~-------~p~~D~i~l 87 (90)
..+++=+|+ |.++..+++.. .+..++++|. |+.++..++. ..+.++.||..++ +..+|.++.
T Consensus 231 ~~~iiIiG~--G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~~~~~~i~gd~~~~~~L~~~~~~~a~~vi~ 303 (453)
T PRK09496 231 VKRVMIVGG--GNIGYYLAKLLEKEGYSVKLIERDPERAEELAEELPNTLVLHGDGTDQELLEEEGIDEADAFIA 303 (453)
T ss_pred CCEEEEECC--CHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHCCCCeEEECCCCCHHHHHhcCCccCCEEEE
Confidence 567888887 55555555553 3567899998 8877766543 4677889998762 223787765
No 317
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=80.39 E-value=5.9 Score=27.58 Aligned_cols=72 Identities=21% Similarity=0.196 Sum_probs=49.3
Q ss_pred hhHHHHHhhcccCC----CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCCCCeeEEEecCCCCCC
Q 034578 7 ITMKAFVSHYKVDG----FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTHEGVSHVGGDMFDAIP 80 (90)
Q Consensus 7 ~~~~~~~~~~~~~~----~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~~rv~~~~~d~~~~~p 80 (90)
.+-+++..-++... +.+.-.-+|+|..+|...-.|.++ ++.++.+|=..|.+.-...++++....|-|+..|
T Consensus 191 KLEEA~~tfip~~E~~~rL~~~M~avDLGAcPGGWTyqLVkr--~m~V~aVDng~ma~sL~dtg~v~h~r~DGfk~~P 266 (358)
T COG2933 191 KLEEAFHTFIPRDEWDKRLAPGMWAVDLGACPGGWTYQLVKR--NMRVYAVDNGPMAQSLMDTGQVTHLREDGFKFRP 266 (358)
T ss_pred hHHHHHHHhcChhhhhhhhcCCceeeecccCCCccchhhhhc--ceEEEEeccchhhhhhhcccceeeeeccCccccc
Confidence 34455555554211 233457899999999999999997 7999999965555444446777777777777333
No 318
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=79.69 E-value=5.5 Score=30.05 Aligned_cols=60 Identities=15% Similarity=0.109 Sum_probs=39.2
Q ss_pred CeEEEecCCchHHHHHHHHH--CCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEe
Q 034578 25 RSMVDVGGGTGTVLAEIVKS--YPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFM 87 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~--~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l 87 (90)
.+++=+|+| .++..+++. ..+.+++++|. |+.++.+++. ....+.||..++ +.++|+++.
T Consensus 401 ~~vII~G~G--r~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~-g~~v~~GDat~~~~L~~agi~~A~~vv~ 470 (601)
T PRK03659 401 PQVIIVGFG--RFGQVIGRLLMANKMRITVLERDISAVNLMRKY-GYKVYYGDATQLELLRAAGAEKAEAIVI 470 (601)
T ss_pred CCEEEecCc--hHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC-CCeEEEeeCCCHHHHHhcCCccCCEEEE
Confidence 456666654 444444443 23567999998 8888887764 367788998872 234777765
No 319
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=79.68 E-value=3.7 Score=29.63 Aligned_cols=31 Identities=29% Similarity=0.413 Sum_probs=25.5
Q ss_pred CeEEEecCC-chHHHH-HHHHHCCCCeEEEeeh
Q 034578 25 RSMVDVGGG-TGTVLA-EIVKSYPHIKGINFDL 55 (90)
Q Consensus 25 ~~vlDvG~G-~G~~~~-~l~~~~p~~~~~~~D~ 55 (90)
..|+-||+| +|..+. .|+++.|..+++++|.
T Consensus 25 ~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~ 57 (460)
T TIGR03329 25 ADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEA 57 (460)
T ss_pred eCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 469999999 788555 6777788999999995
No 320
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=79.42 E-value=4.9 Score=29.86 Aligned_cols=60 Identities=15% Similarity=0.169 Sum_probs=39.4
Q ss_pred CeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEe
Q 034578 25 RSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFM 87 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l 87 (90)
.+++=+|+ |.++..++++. .+..++.+|. |+.++.+++ .....+.||..++ +.++|.++.
T Consensus 418 ~hiiI~G~--G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~-~g~~~i~GD~~~~~~L~~a~i~~a~~viv 487 (558)
T PRK10669 418 NHALLVGY--GRVGSLLGEKLLAAGIPLVVIETSRTRVDELRE-RGIRAVLGNAANEEIMQLAHLDCARWLLL 487 (558)
T ss_pred CCEEEECC--ChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHH-CCCeEEEcCCCCHHHHHhcCccccCEEEE
Confidence 44555555 55555555543 3467899998 888887775 4578889998873 234786553
No 321
>CHL00194 ycf39 Ycf39; Provisional
Probab=79.12 E-value=6.2 Score=26.84 Aligned_cols=57 Identities=21% Similarity=0.126 Sum_probs=35.7
Q ss_pred ecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC--C----CcccEEEe
Q 034578 30 VGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA--I----PNADAVFM 87 (90)
Q Consensus 30 vG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~--~----p~~D~i~l 87 (90)
|=||||.++..++++. .+.+++++.. +.-.+.. ...+++++.+|+.++ + ..+|+|+.
T Consensus 5 VtGatG~iG~~lv~~Ll~~g~~V~~l~R~~~~~~~l-~~~~v~~v~~Dl~d~~~l~~al~g~d~Vi~ 70 (317)
T CHL00194 5 VIGATGTLGRQIVRQALDEGYQVRCLVRNLRKASFL-KEWGAELVYGDLSLPETLPPSFKGVTAIID 70 (317)
T ss_pred EECCCcHHHHHHHHHHHHCCCeEEEEEcChHHhhhH-hhcCCEEEECCCCCHHHHHHHHCCCCEEEE
Confidence 3356888888887663 3567888886 4322111 124689999999873 2 23677663
No 322
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=78.61 E-value=7.2 Score=26.77 Aligned_cols=50 Identities=14% Similarity=0.229 Sum_probs=33.7
Q ss_pred eEEEecCCchHHHHHHHHHC---CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCC
Q 034578 26 SMVDVGGGTGTVLAEIVKSY---PHIKGINFDL-QHVIATAPTHEGVSHVGGDMF 76 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~ 76 (90)
+|| |=||+|.++..++++. .+.+++++|. +..........+++++.+|+.
T Consensus 3 ~il-VtGatGfiGs~l~~~L~~~~~~~V~~~~r~~~~~~~~~~~~~~~~~~~Dl~ 56 (347)
T PRK11908 3 KVL-ILGVNGFIGHHLSKRILETTDWEVYGMDMQTDRLGDLVNHPRMHFFEGDIT 56 (347)
T ss_pred EEE-EECCCcHHHHHHHHHHHhCCCCeEEEEeCcHHHHHHhccCCCeEEEeCCCC
Confidence 455 3456899888888775 3468999997 433332223356999999997
No 323
>KOG1252 consensus Cystathionine beta-synthase and related enzymes [Amino acid transport and metabolism]
Probab=78.39 E-value=5.3 Score=28.42 Aligned_cols=32 Identities=28% Similarity=0.349 Sum_probs=27.5
Q ss_pred CCeEEEecCCchH----HHHHHHHHCCCCeEEEeeh
Q 034578 24 IRSMVDVGGGTGT----VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 24 ~~~vlDvG~G~G~----~~~~l~~~~p~~~~~~~D~ 55 (90)
.-.++-.|.|||. +++.+.++.|+.+++++|.
T Consensus 212 ~vDi~V~gaGTGGTitgvGRylke~~~~~kVv~vdp 247 (362)
T KOG1252|consen 212 KVDIFVAGAGTGGTITGVGRYLKEQNPNIKVVGVDP 247 (362)
T ss_pred CCCEEEeccCCCceeechhHHHHHhCCCCEEEEeCC
Confidence 3457778888886 8899999999999999996
No 324
>PLN02427 UDP-apiose/xylose synthase
Probab=77.91 E-value=8.9 Score=26.79 Aligned_cols=53 Identities=9% Similarity=0.068 Sum_probs=34.8
Q ss_pred CCeEEEecCCchHHHHHHHHHCC---CCeEEEeeh-HHHHHhCC------CCCCeeEEEecCCC
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYP---HIKGINFDL-QHVIATAP------THEGVSHVGGDMFD 77 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-p~~~~~a~------~~~rv~~~~~d~~~ 77 (90)
+.+||=. ||+|.++..++++.- ..+++++|. +.-.+... ..++++++.+|+.+
T Consensus 14 ~~~VlVT-GgtGfIGs~lv~~L~~~~g~~V~~l~r~~~~~~~l~~~~~~~~~~~~~~~~~Dl~d 76 (386)
T PLN02427 14 PLTICMI-GAGGFIGSHLCEKLMTETPHKVLALDVYNDKIKHLLEPDTVPWSGRIQFHRINIKH 76 (386)
T ss_pred CcEEEEE-CCcchHHHHHHHHHHhcCCCEEEEEecCchhhhhhhccccccCCCCeEEEEcCCCC
Confidence 3467744 468888888887652 367888996 43322211 12479999999976
No 325
>PRK15076 alpha-galactosidase; Provisional
Probab=77.86 E-value=5.2 Score=29.03 Aligned_cols=63 Identities=14% Similarity=0.157 Sum_probs=37.5
Q ss_pred eEEEecCCc-hHHH---HHHH--HHCCCCeEEEeeh-HHHHHhCCC---------CCCeeEE-EecCCCCCCcccEEEee
Q 034578 26 SMVDVGGGT-GTVL---AEIV--KSYPHIKGINFDL-QHVIATAPT---------HEGVSHV-GGDMFDAIPNADAVFMK 88 (90)
Q Consensus 26 ~vlDvG~G~-G~~~---~~l~--~~~p~~~~~~~D~-p~~~~~a~~---------~~rv~~~-~~d~~~~~p~~D~i~l~ 88 (90)
+|.=||+|+ |... ..++ ...+...++.+|+ ++.++.+.. ....++. ..|..+.+..+|.|+..
T Consensus 3 KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~~~~~l~~~~~~~~~~~~~i~~ttD~~eal~dADfVv~t 82 (431)
T PRK15076 3 KITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLEESEIVARKLAESLGASAKITATTDRREALQGADYVINA 82 (431)
T ss_pred EEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhCCCCEEeEe
Confidence 577899998 6322 2333 4456668999998 766553221 1223443 45554556678888753
No 326
>TIGR00689 rpiB_lacA_lacB sugar-phosphate isomerases, RpiB/LacA/LacB family. Proteins of known function in this family act as sugar (pentose and/or hexose)-phosphate isomerases, including the LacA and LacB subunits of galactose-6-phosphate isomerases from Gram-positive bacteria and RpiB. RpiB is the second ribose phosphate isomerase of E. coli. It lacks homology to RpiA, its inducer is unknown (but is not ribose), and it can be replaced by the homologous galactose-6-phosphate isomerase of Streptococcus mutans, all of which suggests that the ribose phosphate isomerase activity of RpiB is a secondary function. On the other hand, there appear to be a significant number of species which contain rpiB, lack rpiA and seem to require rpi activity in order to copplete the pentose phosphate pathway.
Probab=77.47 E-value=3.9 Score=25.42 Aligned_cols=49 Identities=18% Similarity=0.144 Sum_probs=32.3
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCC--CCeeEEEecC
Q 034578 27 MVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTH--EGVSHVGGDM 75 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~--~rv~~~~~d~ 75 (90)
.-=+.||||.=..-.+.++|++++..+--|...+.+++. .++-.+.+.+
T Consensus 58 ~GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~hNnaNVl~lGar~ 108 (144)
T TIGR00689 58 LGILICGTGIGMSIAANKFKGIRAALCVDEYTAALARQHNDANVLCLGSRV 108 (144)
T ss_pred eEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEEECccc
Confidence 344678888877777788999986555447777777763 3444444433
No 327
>TIGR01120 rpiB ribose 5-phosphate isomerase B. Involved in the non-oxidative branch of the pentose phospate pathway.
Probab=77.45 E-value=3.9 Score=25.36 Aligned_cols=40 Identities=13% Similarity=0.046 Sum_probs=28.1
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCC
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTH 65 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~ 65 (90)
..-=+.||||.=..-.+.++|++++...--+...+.+++.
T Consensus 58 ~~GIliCGtGiG~siaANK~~GIraa~~~d~~~A~~ar~h 97 (143)
T TIGR01120 58 DGGILICGTGIGMSIAANKFAGIRAALCSEPYMAQMSRLH 97 (143)
T ss_pred ceEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHh
Confidence 3445678888866666777999987555447777777763
No 328
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=77.44 E-value=7 Score=27.74 Aligned_cols=45 Identities=24% Similarity=0.491 Sum_probs=28.6
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchH-----HHHHHHHHCCCCeEEEeeh
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGT-----VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~-----~~~~l~~~~p~~~~~~~D~ 55 (90)
.+..++..+. +.+..-+-++|||||. +...+...||+.....+-.
T Consensus 79 ir~~~E~cD~--l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v 128 (382)
T cd06059 79 IRKQVEKCDS--LQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSI 128 (382)
T ss_pred HHHHHHhCCC--cCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEE
Confidence 3444566663 5666788999998873 4455666788665444443
No 329
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=77.32 E-value=5.7 Score=28.88 Aligned_cols=36 Identities=19% Similarity=0.421 Sum_probs=25.9
Q ss_pred CCCCCeEEEecCCchH-----HHHHHHHHCCCCeEEEeeh-H
Q 034578 21 FNNIRSMVDVGGGTGT-----VLAEIVKSYPHIKGINFDL-Q 56 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~-----~~~~l~~~~p~~~~~~~D~-p 56 (90)
+.+...+-.+|||||. ++..|...||+.....+-+ |
T Consensus 130 l~gf~i~~SlgGGTGSG~gs~l~e~L~d~y~~~~~~~~~V~P 171 (431)
T cd02188 130 LEGFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFP 171 (431)
T ss_pred cceeEEEecCCCCcchhHHHHHHHHHHhHcCcceeeeEEecC
Confidence 5566789999999984 6667778899765444444 5
No 330
>PLN00220 tubulin beta chain; Provisional
Probab=77.21 E-value=5.5 Score=29.03 Aligned_cols=44 Identities=20% Similarity=0.497 Sum_probs=29.2
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchH-----HHHHHHHHCCCCeEEEee
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGT-----VLAEIVKSYPHIKGINFD 54 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~-----~~~~l~~~~p~~~~~~~D 54 (90)
++..++..+. +.+...+-.+|||||. +...|...||+.....+-
T Consensus 120 ir~~~E~cd~--l~gf~~~~sl~GGTGSG~gs~l~~~l~~~y~~~~~~~~~ 168 (447)
T PLN00220 120 VRKEAENCDC--LQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMMLTFS 168 (447)
T ss_pred HHHHHHhCcC--cCceEEEEecCCCccccHHHHHHHHHHHhccccceeeeE
Confidence 3444556664 6677889999999865 555677789876444433
No 331
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=77.21 E-value=2 Score=29.26 Aligned_cols=58 Identities=10% Similarity=0.045 Sum_probs=36.1
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT 64 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 64 (90)
+.+++.+.+.-.. ...+.-++||||.|.-++---+--+-=..+.++.|+ +..++.|+.
T Consensus 62 h~laDLL~s~~g~-~~~~~i~~LDIGvGAnCIYPliG~~eYgwrfvGseid~~sl~sA~~ 120 (292)
T COG3129 62 HHLADLLASTSGQ-IPGKNIRILDIGVGANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKA 120 (292)
T ss_pred HHHHHHHHhcCCC-CCcCceEEEeeccCcccccccccceeecceeecCccCHHHHHHHHH
Confidence 3444444444442 112456899999998886444433333567889888 887777653
No 332
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=77.04 E-value=3.7 Score=28.36 Aligned_cols=59 Identities=17% Similarity=0.205 Sum_probs=40.2
Q ss_pred EEEecCCchHHHHHHHHHCCCCeE-EEeeh-HHHHHhCCCC-CCeeEEEecCCC----CCCcccEEEee
Q 034578 27 MVDVGGGTGTVLAEIVKSYPHIKG-INFDL-QHVIATAPTH-EGVSHVGGDMFD----AIPNADAVFMK 88 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p~~~~-~~~D~-p~~~~~a~~~-~rv~~~~~d~~~----~~p~~D~i~l~ 88 (90)
++|+=||.|.+...+.++. .++ .++|+ +.+++.-+.+ +. .+..+|+.+ .+|+.|+++.+
T Consensus 1 vidLF~G~GG~~~Gl~~aG--~~~~~a~e~~~~a~~ty~~N~~~-~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAG--FKCVFASEIDKYAQKTYEANFGN-KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcC--CeEEEEEeCCHHHHHHHHHhCCC-CCCccChhhhhhhhCCCcCEEEec
Confidence 5899999999999998764 554 56888 7776654442 22 445677765 24557887654
No 333
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=76.92 E-value=8.3 Score=27.09 Aligned_cols=61 Identities=20% Similarity=0.241 Sum_probs=35.9
Q ss_pred EEEecCC-chHHHHHHHHHCCCC-eEEEeeh-HHHHH-hCC--CCCCeeEEEecCCCC--C----CcccEEEe
Q 034578 27 MVDVGGG-TGTVLAEIVKSYPHI-KGINFDL-QHVIA-TAP--THEGVSHVGGDMFDA--I----PNADAVFM 87 (90)
Q Consensus 27 vlDvG~G-~G~~~~~l~~~~p~~-~~~~~D~-p~~~~-~a~--~~~rv~~~~~d~~~~--~----p~~D~i~l 87 (90)
|+=+|+| .|......+.+.+.. ++++.|. ++-.+ .++ ...+++++..|..+. + .++|+|+-
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~dvVin 73 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPEKAERLAEKLLGDRVEAVQVDVNDPESLAELLRGCDVVIN 73 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHHHHHHHHT--TTTTEEEEE--TTTHHHHHHHHTTSSEEEE
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHHHHHHHHhhccccceeEEEEecCCHHHHHHHHhcCCEEEE
Confidence 4456664 566555555555555 8899997 55433 333 357899999999872 2 23788774
No 334
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=76.91 E-value=16 Score=26.42 Aligned_cols=62 Identities=21% Similarity=0.191 Sum_probs=42.7
Q ss_pred CeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC--CCCeeEEEecCCCC------CCcccEEE
Q 034578 25 RSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPT--HEGVSHVGGDMFDA------IPNADAVF 86 (90)
Q Consensus 25 ~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~d~~~~------~p~~D~i~ 86 (90)
.+||=+||| -|......+.+.-+.++++.|. +.-++++.. .++++...-|..+. +.++|+++
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~~v~~~~vD~~d~~al~~li~~~d~VI 73 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGGKVEALQVDAADVDALVALIKDFDLVI 73 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccccceeEEecccChHHHHHHHhcCCEEE
Confidence 468889985 3554444444455588999998 777777655 36899999999872 23367765
No 335
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=76.67 E-value=13 Score=24.77 Aligned_cols=58 Identities=17% Similarity=0.189 Sum_probs=37.8
Q ss_pred CCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCCc-ccEEE
Q 034578 23 NIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIPN-ADAVF 86 (90)
Q Consensus 23 ~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p~-~D~i~ 86 (90)
.+.++|-+|.= +|.+...++.+ ..+++.+|+ |.+-..-+ ++++|..+ ..+++. +|+|+
T Consensus 44 E~~~vli~G~YltG~~~a~~Ls~--~~~vtv~Di~p~~r~~lp--~~v~Fr~~--~~~~~G~~Dliv 104 (254)
T COG4017 44 EFKEVLIFGVYLTGNYTAQMLSK--ADKVTVVDIHPFMRGFLP--NNVKFRNL--LKFIRGEVDLIV 104 (254)
T ss_pred CcceEEEEEeeehhHHHHHHhcc--cceEEEecCCHHHHhcCC--CCccHhhh--cCCCCCceeEEE
Confidence 46788888874 88888887776 678999999 76654433 23555433 223443 67664
No 336
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=76.53 E-value=6.2 Score=29.42 Aligned_cols=42 Identities=17% Similarity=0.156 Sum_probs=34.4
Q ss_pred CCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCC
Q 034578 23 NIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPTH 65 (90)
Q Consensus 23 ~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~ 65 (90)
++.+|+=+|+| .|..++..++..- ++++++|. |+..+++++.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~lG-A~V~a~D~~~~rle~aesl 207 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSLG-AIVRAFDTRPEVAEQVESM 207 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCC-CEEEEEeCCHHHHHHHHHc
Confidence 46899999999 5778888888775 58999999 8888888763
No 337
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=76.48 E-value=8.6 Score=29.19 Aligned_cols=63 Identities=19% Similarity=0.228 Sum_probs=41.8
Q ss_pred CCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEEee
Q 034578 24 IRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVFMK 88 (90)
Q Consensus 24 ~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~l~ 88 (90)
..+++=+|+| .|....+.+++ .+.+++++|. |+.++.+++. ....+.||..++ +.++|+++..
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~-~g~~vvvID~d~~~v~~~~~~-g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLS-SGVKMTVLDHDPDHIETLRKF-GMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHh-CCCCEEEEECCHHHHHHHHhc-CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 3578888877 45544444443 3567899998 8888877654 467788998772 2247777653
No 338
>PRK05571 ribose-5-phosphate isomerase B; Provisional
Probab=76.11 E-value=4.5 Score=25.24 Aligned_cols=47 Identities=17% Similarity=0.060 Sum_probs=31.1
Q ss_pred EEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCC--CCeeEEEec
Q 034578 28 VDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTH--EGVSHVGGD 74 (90)
Q Consensus 28 lDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~--~rv~~~~~d 74 (90)
-=+-||||.=..-.+.++|++++...--+...+.+++. .++=.+.+.
T Consensus 62 GIliCGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~hNnaNVL~lG~r 110 (148)
T PRK05571 62 GILICGTGIGMSIAANKVKGIRAALCHDTYSAHLAREHNNANVLALGAR 110 (148)
T ss_pred EEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHhcCCcEEEECcc
Confidence 34568888866677788999997665547777777763 344444333
No 339
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=76.02 E-value=1.8 Score=29.15 Aligned_cols=61 Identities=13% Similarity=0.157 Sum_probs=42.4
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC----CCC-cccEEEee
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD----AIP-NADAVFMK 88 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~----~~p-~~D~i~l~ 88 (90)
+++|+=||.|.+...+.+..- -.+.++|+ |.+.+.-+.+-. ....+|+.+ .+| +.|+++.+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~-~~~~a~e~~~~a~~~y~~N~~-~~~~~Di~~~~~~~l~~~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGF-EVVWAVEIDPDACETYKANFP-EVICGDITEIDPSDLPKDVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTE-EEEEEEESSHHHHHHHHHHHT-EEEESHGGGCHHHHHHHT-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcCc-EEEEEeecCHHHHHhhhhccc-ccccccccccccccccccceEEEec
Confidence 689999999999999999861 23577888 777765544322 777888876 256 48887654
No 340
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=76.00 E-value=1.7 Score=29.58 Aligned_cols=53 Identities=25% Similarity=0.411 Sum_probs=38.3
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHC-C----C-C---eEEEeehHHHHHhCCCCCCeeEEEecCCC
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSY-P----H-I---KGINFDLQHVIATAPTHEGVSHVGGDMFD 77 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~-p----~-~---~~~~~D~p~~~~~a~~~~rv~~~~~d~~~ 77 (90)
|++..+++|++..+|+.+.-+.++. . . . +++.+|+..|... +.+..+++|+..
T Consensus 39 ~~gv~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~MaPI----~GV~qlq~DIT~ 100 (294)
T KOG1099|consen 39 FEGVKRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMAPI----EGVIQLQGDITS 100 (294)
T ss_pred HhhhhHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCCcc----CceEEeecccCC
Confidence 5677899999999999888887762 2 1 1 2899998666433 456667777765
No 341
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=75.92 E-value=6.7 Score=25.48 Aligned_cols=37 Identities=24% Similarity=0.518 Sum_probs=25.7
Q ss_pred CCCCCeEEEecCCchH-----HHHHHHHHCCCCeEEEeeh-HH
Q 034578 21 FNNIRSMVDVGGGTGT-----VLAEIVKSYPHIKGINFDL-QH 57 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~-----~~~~l~~~~p~~~~~~~D~-p~ 57 (90)
....-.+.-+|||||+ ++..+...||+..+..+-+ |.
T Consensus 124 ~~~~~i~~slgGGTGSG~~~~l~~~l~~~y~~~~~~~~~ilP~ 166 (216)
T PF00091_consen 124 LDGFFIVHSLGGGTGSGLGPVLAEMLREEYPKKPIISFSILPF 166 (216)
T ss_dssp ESEEEEEEESSSSHHHHHHHHHHHHHHHTSTTSEEEEEEEE-C
T ss_pred cccceecccccceeccccccccchhhhccccccceeecccccc
Confidence 3344567889999876 6666677788887777665 76
No 342
>PTZ00357 methyltransferase; Provisional
Probab=75.54 E-value=6 Score=31.17 Aligned_cols=53 Identities=13% Similarity=0.166 Sum_probs=38.5
Q ss_pred CeEEEecCCchHHHHHHHHHCC----CCeEEEeeh-HHHHHhC--C--C-----------CCCeeEEEecCCC
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYP----HIKGINFDL-QHVIATA--P--T-----------HEGVSHVGGDMFD 77 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p----~~~~~~~D~-p~~~~~a--~--~-----------~~rv~~~~~d~~~ 77 (90)
-.|+-+|+|-|-+....+++.. .+++.+++. |+++... + . .++|+++..|+.+
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~ 774 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRT 774 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccc
Confidence 3589999999998888777654 567899998 6632211 1 1 1469999999987
No 343
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=75.25 E-value=7.7 Score=25.42 Aligned_cols=50 Identities=18% Similarity=0.220 Sum_probs=35.3
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHH
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIA 60 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~ 60 (90)
+.+++.|++.++. . ...+++|.=||+|.++..+++ +..+++.-|+ +..+.
T Consensus 6 ~~l~~~I~~~ip~--~-~~~~~vepF~G~g~V~~~~~~--~~~~vi~ND~~~~l~~ 56 (260)
T PF02086_consen 6 RKLAKWIIELIPK--N-KHKTYVEPFAGGGSVFLNLKQ--PGKRVIINDINPDLIN 56 (260)
T ss_dssp GGGHHHHHHHS-S----S-SEEEETT-TTSHHHHCC-----SSEEEEEES-HHHHH
T ss_pred HHHHHHHHHHcCC--C-CCCEEEEEecchhHHHHHhcc--cccceeeeechHHHHH
Confidence 4567888888883 2 688999999999999999877 6778899998 65443
No 344
>KOG3851 consensus Sulfide:quinone oxidoreductase/flavo-binding protein [Energy production and conversion]
Probab=75.18 E-value=5.7 Score=28.50 Aligned_cols=33 Identities=18% Similarity=0.185 Sum_probs=26.4
Q ss_pred CCCeEEEecCCchHH--HHHHHHHCCCCeEEEeeh
Q 034578 23 NIRSMVDVGGGTGTV--LAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~--~~~l~~~~p~~~~~~~D~ 55 (90)
+.-.||-||||+|.+ +..+.++.|.-++.++|-
T Consensus 38 ~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep 72 (446)
T KOG3851|consen 38 KHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEP 72 (446)
T ss_pred cceEEEEEcCCcchhHHHHHHHhhcCCCceEEecc
Confidence 456799999999985 456778888888888884
No 345
>PRK08507 prephenate dehydrogenase; Validated
Probab=75.09 E-value=7.1 Score=26.19 Aligned_cols=61 Identities=15% Similarity=0.182 Sum_probs=33.0
Q ss_pred eEEEecCCc--hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCCCCcccEEEee
Q 034578 26 SMVDVGGGT--GTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDAIPNADAVFMK 88 (90)
Q Consensus 26 ~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~l~ 88 (90)
+|.=||+|. +.++..+.+.....+++++|. ++..+.+++.+-+... .+. +....+|+|++.
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~g~~~~~-~~~-~~~~~aD~Vila 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALELGLVDEI-VSF-EELKKCDVIFLA 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHCCCCccc-CCH-HHHhcCCEEEEe
Confidence 355567664 446666665544457888998 7666655443221111 122 122337888864
No 346
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=75.01 E-value=12 Score=25.78 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=33.4
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHH
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQH 57 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~ 57 (90)
...+.+.+.. .....+|+=+|||.-.+...+.+.||+.++..+|-|.
T Consensus 261 v~~i~~~~~~--~~~~~~Iil~GGGa~ll~~~l~~~f~~~~i~~~~dp~ 307 (320)
T TIGR03739 261 VSTMMTWIGA--PESIQNIVLVGGGAFLFKKAVKAAFPKHRIVEVDEPM 307 (320)
T ss_pred HHHHHHhccc--CCcccEEEEeCCcHHHHHHHHHHHCCCCeeEecCCcH
Confidence 3444444432 2346789999999999999999999998776666443
No 347
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=74.99 E-value=6.9 Score=26.49 Aligned_cols=55 Identities=22% Similarity=0.256 Sum_probs=33.2
Q ss_pred CCchHHHHHHHHHC----CCCeEEEeeh-HHHH--HhCCCCCCeeEEEecCCCC------CCcccEEE
Q 034578 32 GGTGTVLAEIVKSY----PHIKGINFDL-QHVI--ATAPTHEGVSHVGGDMFDA------IPNADAVF 86 (90)
Q Consensus 32 ~G~G~~~~~l~~~~----p~~~~~~~D~-p~~~--~~a~~~~rv~~~~~d~~~~------~p~~D~i~ 86 (90)
||+|.++..+.++. +..++..+|+ +... ......+..+++.+|+.++ +.++|+|+
T Consensus 4 GgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~a~~g~d~V~ 71 (280)
T PF01073_consen 4 GGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLKDLQKSGVKEYIQGDITDPESLEEALEGVDVVF 71 (280)
T ss_pred cCCcHHHHHHHHHHHHCCCceEEEEcccccccccchhhhcccceeEEEeccccHHHHHHHhcCCceEE
Confidence 67888777766653 3356888887 3221 1222234455999999872 23467665
No 348
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=74.40 E-value=5.9 Score=24.58 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=25.9
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
+|+=||+|.+.+..+..-+.++.+++.+|.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~ 30 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEK 30 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEec
Confidence 478899999998888888888999999974
No 349
>PRK07454 short chain dehydrogenase; Provisional
Probab=74.35 E-value=17 Score=23.29 Aligned_cols=54 Identities=7% Similarity=0.017 Sum_probs=34.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCC-----CCCCeeEEEecCCC
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAP-----THEGVSHVGGDMFD 77 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~-----~~~rv~~~~~d~~~ 77 (90)
+.++++-.|+ +|.++..+++++ .+.++++++. ++..+... ...++.++.+|+.+
T Consensus 5 ~~k~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 66 (241)
T PRK07454 5 SMPRALITGA-SSGIGKATALAFAKAGWDLALVARSQDALEALAAELRSTGVKAAAYSIDLSN 66 (241)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhCCCcEEEEEccCCC
Confidence 4567777775 666666666554 3568888887 44332211 13578888999876
No 350
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=74.34 E-value=10 Score=26.26 Aligned_cols=34 Identities=26% Similarity=0.534 Sum_probs=23.7
Q ss_pred CCCCCeEEEecCCchH-----HHHHHHHHCCCCeEEEee
Q 034578 21 FNNIRSMVDVGGGTGT-----VLAEIVKSYPHIKGINFD 54 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~-----~~~~l~~~~p~~~~~~~D 54 (90)
+....-+.++|+|||. ++..+...||+...+.+-
T Consensus 89 ~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~~~~~~ 127 (328)
T cd00286 89 LQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFS 127 (328)
T ss_pred ccceEEEeecCCCccccHHHHHHHHHHHHcCccceeEEE
Confidence 4556789999998883 667777888854444443
No 351
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=74.17 E-value=8.5 Score=26.57 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=38.9
Q ss_pred CCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HH----HHHhCC------CCCCeeEEEecCCCC------CCcccE
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QH----VIATAP------THEGVSHVGGDMFDA------IPNADA 84 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~----~~~~a~------~~~rv~~~~~d~~~~------~p~~D~ 84 (90)
..+||=.|+ +|.++..++++. .+.+++++|. +. ..+... ...+++++.+|+.+. +..+|.
T Consensus 15 ~~~vlVtGa-tGfiG~~lv~~L~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Di~d~~~l~~~~~~~d~ 93 (348)
T PRK15181 15 PKRWLITGV-AGFIGSGLLEELLFLNQTVIGLDNFSTGYQHNLDDVRTSVSEEQWSRFIFIQGDIRKFTDCQKACKNVDY 93 (348)
T ss_pred CCEEEEECC-ccHHHHHHHHHHHHCCCEEEEEeCCCCcchhhhhhhhhccccccCCceEEEEccCCCHHHHHHHhhCCCE
Confidence 457776664 888888777775 3568899985 32 111111 124789999999862 233676
Q ss_pred EE
Q 034578 85 VF 86 (90)
Q Consensus 85 i~ 86 (90)
|+
T Consensus 94 Vi 95 (348)
T PRK15181 94 VL 95 (348)
T ss_pred EE
Confidence 54
No 352
>PF02502 LacAB_rpiB: Ribose/Galactose Isomerase; InterPro: IPR003500 This entry represents the sugar isomerase enzymes ribose 5-phosphate isomerase B (rpiB), galactose isomerase subunit A (LacA) and galactose isomerase subunit B (LacB). Galactose-6-phosphate isomerase (5.3.1.26 from EC) is a heteromultimeric protein consisting of subunits LacA and LacB, and catalyses the conversion of D-galactose 6-phosphate to D-tagatose and 6-phosphate in the tagatose 6-phosphate pathway of lactose catabolism []. Galactose-6-phosphate isomerase is induced by galactose or lactose. This entry represents the LacB subunit. Ribose 5-phosphate isomerase (5.3.1.6 from EC) forms a homodimer and catalyses the interconversion of D-ribose 5-phosphate and D-ribulose 5-phosphate in the non-oxidative branch of the pentose phosphate pathway. This reaction permits the synthesis of ribose from other sugars, as well as the recycling of sugars from nucleotide breakdown. Two unrelated enzymes can catalyse this reaction: RpiA (found in most organisms) and RpiB (found in some bacteria and eukaryotes). RpiB is also involved in metabolism of the rare sugar, allose, in addition to ribose sugars. The structures of RpiA and RpiB are distinct, RpiB having a Rossmann-type alpha/beta/alpha sandwich topology [].; GO: 0005975 carbohydrate metabolic process; PDB: 3HEE_A 3HE8_A 3PH3_B 3PH4_B 3ONO_A 4EM8_B 3S5P_B 1O1X_A 2BES_D 2VVP_D ....
Probab=74.14 E-value=3.3 Score=25.56 Aligned_cols=47 Identities=19% Similarity=0.111 Sum_probs=29.0
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCC--CCeeEEEe
Q 034578 27 MVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTH--EGVSHVGG 73 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~--~rv~~~~~ 73 (90)
.-=+.||||.=..-.+.++|++++...--|...+.+++. .++-.+.+
T Consensus 59 ~GIliCgtGiG~~iaANK~~GIrAa~~~d~~~A~~ar~hNdaNVL~lG~ 107 (140)
T PF02502_consen 59 RGILICGTGIGMSIAANKVPGIRAALCSDPYSAKMAREHNDANVLCLGA 107 (140)
T ss_dssp EEEEEESSSHHHHHHHHTSTT--EEE-SSHHHHHHHHHTT--SEEEEET
T ss_pred eEEEEcCCChhhhhHhhcCCCEEEEeeCCHHHHHHHHHhcCCcEEEech
Confidence 455678888877777888999987665557777777663 44444433
No 353
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=73.87 E-value=9 Score=25.70 Aligned_cols=49 Identities=10% Similarity=0.156 Sum_probs=33.7
Q ss_pred chhhhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 4 TTKITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
.|+.+.+.-.+.++. .. ...|+=||+|...++.+...+..+.+++.+|.
T Consensus 4 ~~~~~~~~~~~~~~~--~~-~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk 52 (254)
T TIGR00292 4 ISRAIVERYFEDLLD--YA-ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLER 52 (254)
T ss_pred hHHHHHHHHHHHHHH--hc-CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec
Confidence 455555555555552 22 34599999998877766666656789999996
No 354
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=73.82 E-value=9.2 Score=27.85 Aligned_cols=65 Identities=17% Similarity=0.174 Sum_probs=41.4
Q ss_pred CCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh--HHHHHhCCCCCCeeEEEecC-CCCCCcccEEEee
Q 034578 23 NIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL--QHVIATAPTHEGVSHVGGDM-FDAIPNADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~--p~~~~~a~~~~rv~~~~~d~-~~~~p~~D~i~l~ 88 (90)
...++|=||.| .|.+...-+....--++++... ..+.+.|++-+ .....-+= .+.+.++|+|+.+
T Consensus 177 ~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~erA~~La~~~~-~~~~~l~el~~~l~~~DvViss 245 (414)
T COG0373 177 KDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLERAEELAKKLG-AEAVALEELLEALAEADVVISS 245 (414)
T ss_pred ccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhC-CeeecHHHHHHhhhhCCEEEEe
Confidence 45789999999 8887777776665567788875 55665565533 22222211 1135568888865
No 355
>PTZ00387 epsilon tubulin; Provisional
Probab=73.76 E-value=7.4 Score=28.64 Aligned_cols=41 Identities=24% Similarity=0.501 Sum_probs=26.8
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchH-----HHHHHHHHCCCCeEEE
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGT-----VLAEIVKSYPHIKGIN 52 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~-----~~~~l~~~~p~~~~~~ 52 (90)
...++..+. +.+...+-.+|||||. ++..+...||+.....
T Consensus 122 r~~~E~cD~--l~gf~i~~slgGGTGSGlgs~lle~l~d~y~~~~~~~ 167 (465)
T PTZ00387 122 RRQVEQCDS--LQSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFC 167 (465)
T ss_pred HHHHHhccC--cceEEEEeecCCCcchhHHHHHHHHHHHhcccCceee
Confidence 334455553 5566788999999983 5566677788764433
No 356
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=73.66 E-value=7 Score=28.28 Aligned_cols=36 Identities=25% Similarity=0.561 Sum_probs=24.7
Q ss_pred CCCCCeEEEecCCchH-----HHHHHHHHCCCCeEEEeeh-H
Q 034578 21 FNNIRSMVDVGGGTGT-----VLAEIVKSYPHIKGINFDL-Q 56 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~-----~~~~l~~~~p~~~~~~~D~-p 56 (90)
+.+...+-.+|||||. +...+..+||+.....+-+ |
T Consensus 129 l~gf~~~~sl~GGTGSG~gs~l~e~l~d~y~~~~~~~~~V~P 170 (425)
T cd02187 129 LQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMATFSVFP 170 (425)
T ss_pred cceEEEEeecCCCccccHHHHHHHHHHHhcCCcceEEEEEec
Confidence 4455678899998874 4566777899875555544 5
No 357
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=73.46 E-value=7.7 Score=28.28 Aligned_cols=43 Identities=23% Similarity=0.369 Sum_probs=29.7
Q ss_pred HHhhcccCCCCCCCeEEEecCCchH-----HHHHHHHHCCCCeEEEeeh-H
Q 034578 12 FVSHYKVDGFNNIRSMVDVGGGTGT-----VLAEIVKSYPHIKGINFDL-Q 56 (90)
Q Consensus 12 ~~~~~~~~~~~~~~~vlDvG~G~G~-----~~~~l~~~~p~~~~~~~D~-p 56 (90)
.++..+. +.....+-.+|||||. +...+...||......+-. |
T Consensus 119 ~~E~cd~--~~gf~~~~sl~GGtGSG~gs~l~e~l~d~y~~~~~~~~~v~P 167 (446)
T cd02189 119 EVEKCDS--FEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNIVVWP 167 (446)
T ss_pred HHHhCCC--ccceEEEecCCCCcchHHHHHHHHHHHHhcCccceeeeeccC
Confidence 3566663 6667788999999885 6666777788765554444 5
No 358
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=73.35 E-value=19 Score=26.12 Aligned_cols=62 Identities=16% Similarity=0.187 Sum_probs=38.8
Q ss_pred CCeEEEecCCchHHHHHHHHHC--CCCeEEEeehH-----HHHHhCCCCCCeeEEEecCCCC-CCcccEEE
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDLQ-----HVIATAPTHEGVSHVGGDMFDA-IPNADAVF 86 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~p-----~~~~~a~~~~rv~~~~~d~~~~-~p~~D~i~ 86 (90)
..+|+=.| |+|.++..|.++. .+.+++++|.. .-........+++++.+|..+. +.++|+|+
T Consensus 120 ~mkILVTG-atGFIGs~Lv~~Ll~~G~~V~~ldr~~~~~~~~~~~~~~~~~~~~~~~Di~~~~~~~~D~Vi 189 (436)
T PLN02166 120 RLRIVVTG-GAGFVGSHLVDKLIGRGDEVIVIDNFFTGRKENLVHLFGNPRFELIRHDVVEPILLEVDQIY 189 (436)
T ss_pred CCEEEEEC-CccHHHHHHHHHHHHCCCEEEEEeCCCCccHhHhhhhccCCceEEEECccccccccCCCEEE
Confidence 35677666 5888888887764 35688888841 1111111235788999998874 33478765
No 359
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=73.19 E-value=2.1 Score=31.66 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=37.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT 64 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 64 (90)
....++-+|=|.|.+...+...+|..+.+++++ |+|++.|+.
T Consensus 295 ~~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q 337 (482)
T KOG2352|consen 295 TGGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQ 337 (482)
T ss_pred ccCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHh
Confidence 345678888888999999999999999999999 999999876
No 360
>PRK06475 salicylate hydroxylase; Provisional
Probab=73.10 E-value=6.7 Score=27.59 Aligned_cols=31 Identities=13% Similarity=0.005 Sum_probs=27.3
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
.+|+=||+|.+.++.+++.+.++.+++.+|.
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~ 33 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEK 33 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 5789999999998888888778899999996
No 361
>PLN02206 UDP-glucuronate decarboxylase
Probab=72.79 E-value=16 Score=26.44 Aligned_cols=61 Identities=18% Similarity=0.214 Sum_probs=37.7
Q ss_pred CeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-H----HHHHhCCCCCCeeEEEecCCCCC-CcccEEE
Q 034578 25 RSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-Q----HVIATAPTHEGVSHVGGDMFDAI-PNADAVF 86 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p----~~~~~a~~~~rv~~~~~d~~~~~-p~~D~i~ 86 (90)
.+||=.| |+|.++..|+++. .+.+++++|. . +-+..-....+++++.+|..++. .++|.|+
T Consensus 120 ~kILVTG-atGfIGs~Lv~~Ll~~G~~V~~ld~~~~~~~~~~~~~~~~~~~~~i~~D~~~~~l~~~D~Vi 188 (442)
T PLN02206 120 LRVVVTG-GAGFVGSHLVDRLMARGDSVIVVDNFFTGRKENVMHHFSNPNFELIRHDVVEPILLEVDQIY 188 (442)
T ss_pred CEEEEEC-cccHHHHHHHHHHHHCcCEEEEEeCCCccchhhhhhhccCCceEEEECCccChhhcCCCEEE
Confidence 5677555 5888888877764 3567888873 1 11100112357889999988743 3477765
No 362
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=72.72 E-value=7.7 Score=27.20 Aligned_cols=30 Identities=23% Similarity=0.479 Sum_probs=23.3
Q ss_pred eEEEecCC-chH-HHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGG-TGT-VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G-~G~-~~~~l~~~~p~~~~~~~D~ 55 (90)
.|+=||+| .|. .+..|++++|+.+++.+|.
T Consensus 4 dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~ 35 (393)
T PRK11728 4 DFVIIGGGIVGLSTAMQLQERYPGARIAVLEK 35 (393)
T ss_pred cEEEECCcHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 47789999 444 5666777788999999997
No 363
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=72.66 E-value=13 Score=25.52 Aligned_cols=65 Identities=15% Similarity=0.160 Sum_probs=34.4
Q ss_pred CCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HH-HHHhCCCCCCeeEEEe-cCCCCCCcccEEEee
Q 034578 23 NIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QH-VIATAPTHEGVSHVGG-DMFDAIPNADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~-~~~~a~~~~rv~~~~~-d~~~~~p~~D~i~l~ 88 (90)
...+|+-+|+| .|......+......++++++. ++ ..+.+++.+. ..... |+.+.+..+|+++..
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVi~a 245 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYERAEELAKELGG-NAVPLDELLELLNEADVVISA 245 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHcCC-eEEeHHHHHHHHhcCCEEEEC
Confidence 45789999885 3444344444333356888887 54 4444444322 22221 222234557888753
No 364
>PRK06847 hypothetical protein; Provisional
Probab=72.44 E-value=8.7 Score=26.50 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=26.3
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
...|+=||+|.+.++.++..+..+.+++++|.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~v~E~ 35 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVDLVEI 35 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 46799999999888777776666788999985
No 365
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=72.25 E-value=20 Score=26.14 Aligned_cols=65 Identities=12% Similarity=0.087 Sum_probs=35.5
Q ss_pred CCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCcccEEEee
Q 034578 23 NIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPNADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l~ 88 (90)
...+++=+|.| +|.-...++. .-+.++++.|. +.......+...+++..+.... .++++|+|+.+
T Consensus 14 ~~~~v~v~G~G~sG~a~a~~L~-~~G~~V~~~D~~~~~~~~~l~~~gi~~~~~~~~~~~~~~~d~vV~S 81 (473)
T PRK00141 14 LSGRVLVAGAGVSGRGIAAMLS-ELGCDVVVADDNETARHKLIEVTGVADISTAEASDQLDSFSLVVTS 81 (473)
T ss_pred cCCeEEEEccCHHHHHHHHHHH-HCCCEEEEECCChHHHHHHHHhcCcEEEeCCCchhHhcCCCEEEeC
Confidence 34678888877 5543233333 33568999997 3322211112245665553322 35568888865
No 366
>PF06016 Reovirus_L2: Reovirus core-spike protein lambda-2 (L2); InterPro: IPR010311 This family consists of several Reovirus core-spike protein lambda-2 (L2) sequences. The reovirus L2 genome segment encodes the core spike protein lambda-2, which mediates enzymatic reactions in 5' capping of the viral plus-strand transcripts [].; GO: 0004482 mRNA (guanine-N7-)-methyltransferase activity, 0004484 mRNA guanylyltransferase activity, 0005524 ATP binding, 0006370 mRNA capping, 0019028 viral capsid; PDB: 1EJ6_A 3IYL_W 3K1Q_A.
Probab=71.63 E-value=8.4 Score=31.83 Aligned_cols=63 Identities=14% Similarity=0.118 Sum_probs=37.7
Q ss_pred CCCCeEEEecCCchHHHHHHHHHC-CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-C---CcccEEEe
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSY-PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-I---PNADAVFM 87 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-~---p~~D~i~l 87 (90)
.+..++||+|.|.=+=. +... |+..++.+|. |.+...+--+..-.|++.|++.+ + ..+|.+.+
T Consensus 821 ~~~~~~lDLGTGPE~Ri---LsliP~~~pvtmvD~RP~ae~m~~w~t~T~y~~~DYl~~~~~~~~~~D~vta 889 (1289)
T PF06016_consen 821 TDPDHWLDLGTGPECRI---LSLIPPDTPVTMVDTRPFAEPMNCWNTQTQYIQADYLSDAWWNGTPFDAVTA 889 (1289)
T ss_dssp CCC-CEEEET--TT-CH---HHCS-TTSEEEEEESS--SSSCCCCSTTEEEEES-TTSCCGGCC---SEEEE
T ss_pred cCcceEEEccCCcccee---eeccCCCCceEEEecCCcccccchhhhcceeeeeccccceeEecCCCCEEEE
Confidence 34689999999987633 3333 4788999998 76655544467789999999983 1 23787754
No 367
>KOG1209 consensus 1-Acyl dihydroxyacetone phosphate reductase and related dehydrogenases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=71.63 E-value=12 Score=25.44 Aligned_cols=41 Identities=10% Similarity=0.089 Sum_probs=30.5
Q ss_pred CCCCeEEEecCCchHHHHHHHHHCC--CCeEEEeeh--HHHHHhC
Q 034578 22 NNIRSMVDVGGGTGTVLAEIVKSYP--HIKGINFDL--QHVIATA 62 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~~~~~l~~~~p--~~~~~~~D~--p~~~~~a 62 (90)
+.+..||-.||.+|.++.+++++|- +.++.+.-. +.|.+.+
T Consensus 5 ~~~k~VlItgcs~GGIG~ala~ef~~~G~~V~AtaR~~e~M~~L~ 49 (289)
T KOG1209|consen 5 SQPKKVLITGCSSGGIGYALAKEFARNGYLVYATARRLEPMAQLA 49 (289)
T ss_pred cCCCeEEEeecCCcchhHHHHHHHHhCCeEEEEEccccchHhhHH
Confidence 4567899999999999999999873 455655553 5565554
No 368
>PLN03013 cysteine synthase
Probab=71.58 E-value=17 Score=26.53 Aligned_cols=46 Identities=22% Similarity=0.109 Sum_probs=30.3
Q ss_pred hhhhHHHHHhhcccCCCCCCCeEEEecCCchH----HHHHHHHHCCCCeEEEeeh
Q 034578 5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGT----VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~p~~~~~~~D~ 55 (90)
.+..+..|.+..++ .-..+=++.|+|. ++..+.+.+|+.+++++|.
T Consensus 266 ~~ttg~EI~eq~~~-----~~D~vV~~vGtGGtisGiar~lKe~~P~vkVigVep 315 (429)
T PLN03013 266 YETTGPEIWDDTKG-----KVDIFVAGIGTGGTITGVGRFIKEKNPKTQVIGVEP 315 (429)
T ss_pred HHHHHHHHHHhcCC-----CCCEEEEeCCccHHHHHHHHHHHhhCCCCEEEEEEe
Confidence 34566677766651 1234455666664 5667777789999999996
No 369
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=71.19 E-value=8.4 Score=28.00 Aligned_cols=41 Identities=20% Similarity=0.424 Sum_probs=26.4
Q ss_pred HHhhcccCCCCCCCeEEEecCCchH-----HHHHHHHHCCCCeEEEee
Q 034578 12 FVSHYKVDGFNNIRSMVDVGGGTGT-----VLAEIVKSYPHIKGINFD 54 (90)
Q Consensus 12 ~~~~~~~~~~~~~~~vlDvG~G~G~-----~~~~l~~~~p~~~~~~~D 54 (90)
.++..+. +.+...+-.+|||||. +...+...||......+-
T Consensus 124 ~~E~cD~--l~gf~i~~sl~GGTGSGlgs~l~e~l~d~y~~~~~~~~~ 169 (434)
T cd02186 124 LADNCTG--LQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFT 169 (434)
T ss_pred HHhcCCC--cceeEEEeccCCCcchhHHHHHHHHHHHhcCccceeeEE
Confidence 3444443 5566778899999865 556677788865444433
No 370
>PRK12615 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=70.82 E-value=7.4 Score=24.93 Aligned_cols=39 Identities=18% Similarity=0.092 Sum_probs=27.4
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCC
Q 034578 27 MVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTH 65 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~ 65 (90)
.-=+.||||.=..-.+.++|++++...--+...+.+++.
T Consensus 60 ~GIliCGTGiG~siaANK~~GIRAA~~~d~~~A~~ar~h 98 (171)
T PRK12615 60 LGVCICGTGVGINNAVNKVPGIRSALVRDMTTALYAKEE 98 (171)
T ss_pred EEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHh
Confidence 445678888866666777999986555447777777763
No 371
>PRK08163 salicylate hydroxylase; Provisional
Probab=70.80 E-value=9.7 Score=26.51 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=27.9
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
...|+=||+|.+.++.+++-+..+.+++++|.
T Consensus 4 ~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er 35 (396)
T PRK08163 4 VTPVLIVGGGIGGLAAALALARQGIKVKLLEQ 35 (396)
T ss_pred CCeEEEECCcHHHHHHHHHHHhCCCcEEEEee
Confidence 45799999999998888888878899999996
No 372
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=70.68 E-value=8.5 Score=27.75 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=25.9
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
+|+=||+|+|.+..+...+..+.+++.+|.
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~g~~V~lie~ 31 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQNGKNVTLIDE 31 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEC
Confidence 588899999998888877778899999995
No 373
>PF07101 DUF1363: Protein of unknown function (DUF1363); InterPro: IPR009795 This family consists of several Trypanosoma brucei putative variant specific antigen proteins of around 80 residues in length.
Probab=70.51 E-value=1.7 Score=25.35 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=16.3
Q ss_pred EEEecCCchHHHHHHHHHC-CCCeE
Q 034578 27 MVDVGGGTGTVLAEIVKSY-PHIKG 50 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~-p~~~~ 50 (90)
=+|||||.|....+--+.+ ++-..
T Consensus 6 NIDIGcG~GNTmda~fRsct~htSy 30 (124)
T PF07101_consen 6 NIDIGCGAGNTMDAAFRSCTLHTSY 30 (124)
T ss_pred ccccccCCCcchhhhhhccccccce
Confidence 4799999999766655554 34443
No 374
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=70.34 E-value=1.3 Score=31.13 Aligned_cols=66 Identities=15% Similarity=0.142 Sum_probs=45.9
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC-------CCCeeEEEecCCCCCCc--ccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT-------HEGVSHVGGDMFDAIPN--ADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~-------~~rv~~~~~d~~~~~p~--~D~i~l~ 88 (90)
....|+|+=.|-|++.....-+....++.++|+ |+.++.-++ .+|...+.||-..+-|. +|=|.|.
T Consensus 194 ~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLG 269 (351)
T KOG1227|consen 194 DGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLG 269 (351)
T ss_pred ccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeec
Confidence 347899999999999995554455677999999 988775543 15666666665443332 6666654
No 375
>PRK07326 short chain dehydrogenase; Provisional
Probab=70.34 E-value=14 Score=23.47 Aligned_cols=53 Identities=17% Similarity=0.100 Sum_probs=33.2
Q ss_pred CCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhC----CCCCCeeEEEecCCC
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATA----PTHEGVSHVGGDMFD 77 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a----~~~~rv~~~~~d~~~ 77 (90)
..+++-.|+ +|.++..+++++ .+.++++++. +.-.+.. ++..++.++.+|+.+
T Consensus 6 ~~~ilItGa-tg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~D~~~ 65 (237)
T PRK07326 6 GKVALITGG-SKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNKGNVLGLAADVRD 65 (237)
T ss_pred CCEEEEECC-CCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhccCcEEEEEccCCC
Confidence 356777774 666666666553 3678888887 5433222 112578888888765
No 376
>PRK06545 prephenate dehydrogenase; Validated
Probab=70.30 E-value=13 Score=26.13 Aligned_cols=30 Identities=27% Similarity=0.378 Sum_probs=17.3
Q ss_pred eEEEecCC--chHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGG--TGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G--~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
+|.=||.| -|.++..+.++.+...++..|.
T Consensus 2 ~I~iIG~GliG~siA~~L~~~G~~v~i~~~~~ 33 (359)
T PRK06545 2 TVLIVGLGLIGGSLALAIKAAGPDVFIIGYDP 33 (359)
T ss_pred eEEEEEeCHHHHHHHHHHHhcCCCeEEEEeCC
Confidence 45556665 2456666666655556666554
No 377
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=70.24 E-value=9 Score=28.10 Aligned_cols=30 Identities=20% Similarity=0.370 Sum_probs=23.5
Q ss_pred eEEEecCCchH--HHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGT--VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~--~~~~l~~~~p~~~~~~~D~ 55 (90)
+++=||||--. .+-.|.++.|++.++++|-
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~ 33 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEA 33 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEec
Confidence 57889999444 4456778899999999994
No 378
>PLN02661 Putative thiazole synthesis
Probab=70.23 E-value=11 Score=26.95 Aligned_cols=31 Identities=23% Similarity=0.282 Sum_probs=23.9
Q ss_pred CeEEEecCCchHHHHHHHHH-CCCCeEEEeeh
Q 034578 25 RSMVDVGGGTGTVLAEIVKS-YPHIKGINFDL 55 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~ 55 (90)
..|+-||+|...+..+...+ .|+.+++.+|.
T Consensus 93 ~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk 124 (357)
T PLN02661 93 TDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQ 124 (357)
T ss_pred CCEEEECCHHHHHHHHHHHHHcCCCeEEEEec
Confidence 46999999977766555554 57899999995
No 379
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=70.04 E-value=1 Score=25.10 Aligned_cols=56 Identities=20% Similarity=0.220 Sum_probs=25.9
Q ss_pred CchHHHHHHHHHC-----CCCeEEEe-eh-HHHHHhCCCCCCeeEEEecCCCCCCcccEEEee
Q 034578 33 GTGTVLAEIVKSY-----PHIKGINF-DL-QHVIATAPTHEGVSHVGGDMFDAIPNADAVFMK 88 (90)
Q Consensus 33 G~G~~~~~l~~~~-----p~~~~~~~-D~-p~~~~~a~~~~rv~~~~~d~~~~~p~~D~i~l~ 88 (90)
|.|.++..+++.+ +..++... +. |+-.+..++.-.+.+...+..+-...+|+|++.
T Consensus 6 G~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~advvila 68 (96)
T PF03807_consen 6 GAGNMGSALARGLLASGIKPHEVIIVSSRSPEKAAELAKEYGVQATADDNEEAAQEADVVILA 68 (96)
T ss_dssp STSHHHHHHHHHHHHTTS-GGEEEEEEESSHHHHHHHHHHCTTEEESEEHHHHHHHTSEEEE-
T ss_pred CCCHHHHHHHHHHHHCCCCceeEEeeccCcHHHHHHHHHhhccccccCChHHhhccCCEEEEE
Confidence 4455555444432 22566634 77 665554433222444433332323347777764
No 380
>PRK08267 short chain dehydrogenase; Provisional
Probab=69.95 E-value=12 Score=24.29 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=31.4
Q ss_pred eEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCC---CCCeeEEEecCCC
Q 034578 26 SMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPT---HEGVSHVGGDMFD 77 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~---~~rv~~~~~d~~~ 77 (90)
++|-.|+ +|.++..+++++ .+.+++.++. ++.++...+ ..++.++..|+.+
T Consensus 3 ~vlItGa-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~D~~~ 59 (260)
T PRK08267 3 SIFITGA-ASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELGAGNAWTGALDVTD 59 (260)
T ss_pred EEEEeCC-CchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhcCCceEEEEecCCC
Confidence 4666665 456555555543 3568888886 444333221 3578889999876
No 381
>PLN00222 tubulin gamma chain; Provisional
Probab=69.86 E-value=9.4 Score=27.97 Aligned_cols=41 Identities=15% Similarity=0.294 Sum_probs=27.2
Q ss_pred HhhcccCCCCCCCeEEEecCCchH-----HHHHHHHHCCCCeEEEeeh
Q 034578 13 VSHYKVDGFNNIRSMVDVGGGTGT-----VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 13 ~~~~~~~~~~~~~~vlDvG~G~G~-----~~~~l~~~~p~~~~~~~D~ 55 (90)
++..+. +.+...+-.+|||||. ++..|...||......+-+
T Consensus 126 ~E~cd~--l~gf~i~~sl~GGTGSGlgs~lle~L~d~y~~~~~~~~~v 171 (454)
T PLN00222 126 ADGSDS--LEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSV 171 (454)
T ss_pred HHhCCC--ccceEEeecCCCCccchHHHHHHHHHHhhcCCcceeeEEe
Confidence 344553 5666778899998874 6667777888765444443
No 382
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=69.77 E-value=8.8 Score=25.73 Aligned_cols=30 Identities=17% Similarity=0.183 Sum_probs=22.4
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
.|+=||+|.+.++.++.-+.-+.+++.+|.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~i~E~ 32 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVTIIER 32 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEEEEES
T ss_pred eEEEECCCHHHHHHHHHHHhcccccccchh
Confidence 478899998887777776666788999996
No 383
>PRK06753 hypothetical protein; Provisional
Probab=69.68 E-value=8.6 Score=26.53 Aligned_cols=30 Identities=17% Similarity=0.194 Sum_probs=25.0
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
+|+=||+|.+.++.++.-+..+.+++++|.
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~ 31 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEK 31 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 588899999888877777667888999996
No 384
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=69.65 E-value=5.2 Score=29.69 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=19.8
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchHHH
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVL 38 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~ 38 (90)
+...-.++..++ +.+...++||||||=.++
T Consensus 115 rl~~lGv~~~~~---~~~~~lv~DIGGGStEl~ 144 (492)
T COG0248 115 RLIYLGVASTLP---RKGDGLVIDIGGGSTELV 144 (492)
T ss_pred HHHHHHHHhcCC---CCCCEEEEEecCCeEEEE
Confidence 344455566666 346788999999975443
No 385
>COG0698 RpiB Ribose 5-phosphate isomerase RpiB [Carbohydrate transport and metabolism]
Probab=69.45 E-value=8.2 Score=24.25 Aligned_cols=39 Identities=21% Similarity=0.167 Sum_probs=27.3
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEE-EeehHHHHHhCCCC
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGI-NFDLQHVIATAPTH 65 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~-~~D~p~~~~~a~~~ 65 (90)
..-=+.||||.=..-.+.++|.+++- ..| |.....+++.
T Consensus 60 d~GIliCGTGiG~~iaANKv~GiraAl~~D-~~sA~~ar~h 99 (151)
T COG0698 60 DLGILICGTGIGMSIAANKVPGIRAALVSD-PTSAKLAREH 99 (151)
T ss_pred CeeEEEecCChhHHHHhhccCCeEEEEecC-HHHHHHHHhc
Confidence 34556788888666667789999864 455 7777777764
No 386
>PLN00221 tubulin alpha chain; Provisional
Probab=69.37 E-value=8.6 Score=28.14 Aligned_cols=42 Identities=19% Similarity=0.417 Sum_probs=28.8
Q ss_pred HHHHHhhcccCCCCCCCeEEEecCCchH-----HHHHHHHHCCCCeEEE
Q 034578 9 MKAFVSHYKVDGFNNIRSMVDVGGGTGT-----VLAEIVKSYPHIKGIN 52 (90)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~vlDvG~G~G~-----~~~~l~~~~p~~~~~~ 52 (90)
++..++..+. +.+...+-.+|||||. +...+...||......
T Consensus 122 ir~~~E~cD~--l~gf~i~~Sl~GGtGSGlgs~~le~l~d~y~~~~~~~ 168 (450)
T PLN00221 122 IRKLADNCTG--LQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLG 168 (450)
T ss_pred HHHHHHhccC--ccceeEeeccCCCccchHHHHHHHHHHHhccccccee
Confidence 4555666664 6777889999999876 5556667788654333
No 387
>TIGR01119 lacB galactose-6-phosphate isomerase, LacB subunit. This family contains four members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=69.30 E-value=7.9 Score=24.79 Aligned_cols=39 Identities=15% Similarity=0.076 Sum_probs=26.8
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCC
Q 034578 27 MVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTH 65 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~ 65 (90)
.-=+-||||.=..-.+.++|++++..+--+...+.+++.
T Consensus 60 ~GIliCGTGiG~siaANKv~GIRAAl~~d~~sA~~ar~h 98 (171)
T TIGR01119 60 LGVCICGTGVGINNAVNKVPGVRSALVRDMTSALYAKEE 98 (171)
T ss_pred EEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHh
Confidence 344567888766666777999986555447777777763
No 388
>PRK06101 short chain dehydrogenase; Provisional
Probab=69.29 E-value=14 Score=23.86 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=31.0
Q ss_pred eEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhC-CCCCCeeEEEecCCC
Q 034578 26 SMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATA-PTHEGVSHVGGDMFD 77 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a-~~~~rv~~~~~d~~~ 77 (90)
+++=. ||+|.++.++++++ .+.++++++. ++..+.. ....++.++.+|+.+
T Consensus 3 ~vlIt-Gas~giG~~la~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~D~~~ 57 (240)
T PRK06101 3 AVLIT-GATSGIGKQLALDYAKQGWQVIACGRNQSVLDELHTQSANIFTLAFDVTD 57 (240)
T ss_pred EEEEE-cCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHhcCCCeEEEeeCCC
Confidence 34433 45677777766654 3577888887 5444332 223467788888865
No 389
>PTZ00335 tubulin alpha chain; Provisional
Probab=68.77 E-value=9.1 Score=27.98 Aligned_cols=43 Identities=21% Similarity=0.444 Sum_probs=27.3
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchH-----HHHHHHHHCCCCeEEEee
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGT-----VLAEIVKSYPHIKGINFD 54 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~-----~~~~l~~~~p~~~~~~~D 54 (90)
+..++..+. +.+..-+-.+|||||. +...+...||......+-
T Consensus 123 r~~~E~cD~--l~gf~i~~Sl~GGTGSGlgs~l~e~l~d~yp~~~~~~~~ 170 (448)
T PTZ00335 123 RKLADNCTG--LQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFT 170 (448)
T ss_pred HHhHHhccC--ccceeEeeccCCCccchHHHHHHHHHHHhccccceeeEE
Confidence 334445553 5566778899998876 555677778865444433
No 390
>PRK07236 hypothetical protein; Provisional
Probab=68.76 E-value=11 Score=26.24 Aligned_cols=32 Identities=19% Similarity=0.185 Sum_probs=26.9
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
..+|+=||+|.+.++.++.-+..+.+++++|.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~ 37 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFER 37 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEec
Confidence 46799999999888777777667899999996
No 391
>PTZ00215 ribose 5-phosphate isomerase; Provisional
Probab=68.71 E-value=8.3 Score=24.15 Aligned_cols=39 Identities=10% Similarity=-0.018 Sum_probs=27.3
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCC
Q 034578 27 MVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTH 65 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~ 65 (90)
.-=+-||||.=..-.+.++|++++...--+...+.+++.
T Consensus 64 ~GIliCGtGiG~siaANK~~GIRAa~~~d~~~A~~ar~h 102 (151)
T PTZ00215 64 TGILVCGSGIGISIAANKVKGIRCALCHDHYTARMSRQH 102 (151)
T ss_pred EEEEEcCCcHHHHHHHhcCCCeEEEEECCHHHHHHHHHh
Confidence 344568888866777788999986555447777777663
No 392
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=68.46 E-value=14 Score=28.06 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=40.5
Q ss_pred CCeEEEecCCchHHHHHHHHHCC---CCeEEEeeh-HHHHHhCCCCCCeeEEEecCCCC-------CCcccEEE
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYP---HIKGINFDL-QHVIATAPTHEGVSHVGGDMFDA-------IPNADAVF 86 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p---~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~~-------~p~~D~i~ 86 (90)
..+||=.| |+|.++..++++.- +.+++++|. +.........++++++.+|+.+. +...|+|+
T Consensus 315 ~~~VLVTG-atGFIGs~Lv~~Ll~~~g~~V~~l~r~~~~~~~~~~~~~~~~~~gDl~d~~~~l~~~l~~~D~Vi 387 (660)
T PRK08125 315 RTRVLILG-VNGFIGNHLTERLLRDDNYEVYGLDIGSDAISRFLGHPRFHFVEGDISIHSEWIEYHIKKCDVVL 387 (660)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCcEEEEEeCCchhhhhhcCCCceEEEeccccCcHHHHHHHhcCCCEEE
Confidence 34666555 58998888887652 468999997 43332222245789999999752 12367766
No 393
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=68.38 E-value=15 Score=22.01 Aligned_cols=35 Identities=9% Similarity=0.058 Sum_probs=20.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHC---CCCeEEEeeh-HHHH
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSY---PHIKGINFDL-QHVI 59 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~---p~~~~~~~D~-p~~~ 59 (90)
...+++-+|+| .++..+++.. ...+++++|. ++..
T Consensus 18 ~~~~i~iiG~G--~~g~~~a~~l~~~g~~~v~v~~r~~~~~ 56 (155)
T cd01065 18 KGKKVLILGAG--GAARAVAYALAELGAAKIVIVNRTLEKA 56 (155)
T ss_pred CCCEEEEECCc--HHHHHHHHHHHHCCCCEEEEEcCCHHHH
Confidence 35789999986 3444444332 2346788886 5433
No 394
>PRK08622 galactose-6-phosphate isomerase subunit LacB; Reviewed
Probab=68.25 E-value=8.2 Score=24.72 Aligned_cols=39 Identities=18% Similarity=0.095 Sum_probs=27.3
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEeehHHHHHhCCCC
Q 034578 27 MVDVGGGTGTVLAEIVKSYPHIKGINFDLQHVIATAPTH 65 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~~ 65 (90)
.-=+-||||.=..-.+.++|++++..+--+...+.+++.
T Consensus 60 ~GIliCGTGiG~siaANKv~GIRAA~~~d~~sA~~aR~h 98 (171)
T PRK08622 60 LGVCICGTGVGISNAVNKVPGIRSALVRDMTSALYAKEE 98 (171)
T ss_pred EEEEEcCCcHHHHHHHhcCCCeEEEEeCCHHHHHHHHHh
Confidence 344567888766667788999986555447777777763
No 395
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=68.08 E-value=17 Score=24.95 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=29.8
Q ss_pred CCCCeEEEecCC-chHHHHHHHHH-CCCCeEEEeeh-HHHHHhCCC
Q 034578 22 NNIRSMVDVGGG-TGTVLAEIVKS-YPHIKGINFDL-QHVIATAPT 64 (90)
Q Consensus 22 ~~~~~vlDvG~G-~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~~ 64 (90)
....+|+-+|+| .|.++..++++ ....+++++|. +.-++.+++
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 345788888865 55566777775 55678888997 666665554
No 396
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=68.01 E-value=11 Score=29.15 Aligned_cols=33 Identities=15% Similarity=0.303 Sum_probs=29.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
+..+|+=||+|.+.++.+++.+..+.+++++|.
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er 112 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEK 112 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEec
Confidence 446899999999999999888888999999996
No 397
>PRK10637 cysG siroheme synthase; Provisional
Probab=67.91 E-value=16 Score=26.62 Aligned_cols=64 Identities=13% Similarity=0.081 Sum_probs=40.9
Q ss_pred CCCeEEEecCCchHHH--HHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCcccEEEe
Q 034578 23 NIRSMVDVGGGTGTVL--AEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPNADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~--~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l 87 (90)
...+||=||||.=..- ..|++.-.+++++.-++ ++.-+. .+.++++++..+|.. .+..+++++.
T Consensus 11 ~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp~~~~~~~~l-~~~~~i~~~~~~~~~~dl~~~~lv~~ 78 (457)
T PRK10637 11 RDRDCLLVGGGDVAERKARLLLDAGARLTVNALAFIPQFTAW-ADAGMLTLVEGPFDESLLDTCWLAIA 78 (457)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCCCHHHHHH-HhCCCEEEEeCCCChHHhCCCEEEEE
Confidence 4578999999976543 33444444445555455 554433 335789999888865 4666888765
No 398
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=67.68 E-value=24 Score=24.95 Aligned_cols=46 Identities=26% Similarity=0.395 Sum_probs=32.3
Q ss_pred CCchH----HHHHHHHHCCCCeEEEeeh-H-----HHHHhCCCCCCeeEEEecCCC
Q 034578 32 GGTGT----VLAEIVKSYPHIKGINFDL-Q-----HVIATAPTHEGVSHVGGDMFD 77 (90)
Q Consensus 32 ~G~G~----~~~~l~~~~p~~~~~~~D~-p-----~~~~~a~~~~rv~~~~~d~~~ 77 (90)
||.|. +...+.+++|..+++.+|. . +.++....++|.+|+++|+-+
T Consensus 7 GGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~~~~~~fv~~DI~D 62 (340)
T COG1088 7 GGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVEDSPRYRFVQGDICD 62 (340)
T ss_pred cCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhcCCCceEEeccccC
Confidence 45665 4556677789988999994 2 223333346899999999986
No 399
>PRK06153 hypothetical protein; Provisional
Probab=67.54 E-value=12 Score=27.16 Aligned_cols=31 Identities=26% Similarity=0.342 Sum_probs=25.8
Q ss_pred CCeEEEecCC-chHHHHHHHHHCCCCeEEEee
Q 034578 24 IRSMVDVGGG-TGTVLAEIVKSYPHIKGINFD 54 (90)
Q Consensus 24 ~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D 54 (90)
..+|+=|||| +|+.....+.+.+-.+++.+|
T Consensus 176 ~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD 207 (393)
T PRK06153 176 GQRIAIIGLGGTGSYILDLVAKTPVREIHLFD 207 (393)
T ss_pred hCcEEEEcCCccHHHHHHHHHHcCCCEEEEEC
Confidence 4689999985 899888888888877888888
No 400
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=67.37 E-value=19 Score=24.91 Aligned_cols=38 Identities=16% Similarity=0.430 Sum_probs=29.8
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCC----CeEEEeeh-HHHHH
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPH----IKGINFDL-QHVIA 60 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~----~~~~~~D~-p~~~~ 60 (90)
+..+++|+|.|+-.=...|.+++.+ ++.+-+|+ ...++
T Consensus 78 g~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~ 120 (321)
T COG4301 78 GACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILR 120 (321)
T ss_pred CcceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHH
Confidence 4679999999999888777777766 78888997 54443
No 401
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=66.95 E-value=9.4 Score=26.37 Aligned_cols=49 Identities=18% Similarity=0.293 Sum_probs=34.0
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHHHHHCC--CCeEEEeehHH
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEIVKSYP--HIKGINFDLQH 57 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l~~~~p--~~~~~~~D~p~ 57 (90)
.+.+.+.+.+.. +....+|+=+|||+-.+...+.+.+| +-+++..|-|+
T Consensus 258 ~l~~~i~~~~~~--~~~~~~I~~vGGGA~ll~~~Ik~~~~~~~~~i~i~~~pq 308 (318)
T PF06406_consen 258 ELINRILRELGD--FSDIDRIFFVGGGAILLKDAIKEAFPVPNERIVIVDDPQ 308 (318)
T ss_dssp HHHHHHHHHHTT--S-S-SEEEEESTTHHHHHHHHHHHHT--GGGEE--SSGG
T ss_pred HHHHHHHHHHhh--hccCCeEEEECCcHHHHHHHHHHhhCCCCCcEEECCCch
Confidence 344555555543 56678899999999999999999987 56677777655
No 402
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=66.87 E-value=21 Score=25.75 Aligned_cols=33 Identities=15% Similarity=0.099 Sum_probs=21.9
Q ss_pred CCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh
Q 034578 23 NIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 23 ~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
...+++-+|+| .|......+......++++++.
T Consensus 179 ~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~r 212 (417)
T TIGR01035 179 KGKKALLIGAGEMGELVAKHLLRKGVGKILIANR 212 (417)
T ss_pred cCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeC
Confidence 35789999986 4444455455544367888887
No 403
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=66.49 E-value=30 Score=28.25 Aligned_cols=64 Identities=22% Similarity=0.189 Sum_probs=42.8
Q ss_pred CCeEEEecCC-chHHHHHHHHHCCCCe-------------EEEeeh-HHHHHh-CCCCCCeeEEEecCCC--CC----Cc
Q 034578 24 IRSMVDVGGG-TGTVLAEIVKSYPHIK-------------GINFDL-QHVIAT-APTHEGVSHVGGDMFD--AI----PN 81 (90)
Q Consensus 24 ~~~vlDvG~G-~G~~~~~l~~~~p~~~-------------~~~~D~-p~~~~~-a~~~~rv~~~~~d~~~--~~----p~ 81 (90)
..+|+=||+| .|......+.+.|+.. +++.|. ++..+. ++..++++.+..|+.+ .+ .+
T Consensus 569 ~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la~~~~~~~~v~lDv~D~e~L~~~v~~ 648 (1042)
T PLN02819 569 SQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETVEGIENAEAVQLDVSDSESLLKYVSQ 648 (1042)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHHHhcCCCceEEeecCCHHHHHHhhcC
Confidence 5689999998 4777777777777765 788886 544433 3333467777777665 12 34
Q ss_pred ccEEEe
Q 034578 82 ADAVFM 87 (90)
Q Consensus 82 ~D~i~l 87 (90)
.|+|+.
T Consensus 649 ~DaVIs 654 (1042)
T PLN02819 649 VDVVIS 654 (1042)
T ss_pred CCEEEE
Confidence 788875
No 404
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=66.42 E-value=10 Score=20.03 Aligned_cols=26 Identities=15% Similarity=0.207 Sum_probs=15.4
Q ss_pred ecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 30 VGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 30 vG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
||+|.+.++.+..-+-.+.+++.+|.
T Consensus 2 iGaG~sGl~aA~~L~~~g~~v~v~E~ 27 (68)
T PF13450_consen 2 IGAGISGLAAAYYLAKAGYRVTVFEK 27 (68)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEES
T ss_pred EeeCHHHHHHHHHHHHCCCcEEEEec
Confidence 78885544433333323779999995
No 405
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=66.13 E-value=22 Score=20.21 Aligned_cols=61 Identities=15% Similarity=0.111 Sum_probs=36.0
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeehHH-HHHhCCCCCCeeEEEecCCCCCCcccEEEee
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDLQH-VIATAPTHEGVSHVGGDMFDAIPNADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~p~-~~~~a~~~~rv~~~~~d~~~~~p~~D~i~l~ 88 (90)
+..++|=||+|.=.....-.-.--+++++.+.... ..+ +++++....+.+.+..+|+++..
T Consensus 6 ~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~~~~~-----~~i~~~~~~~~~~l~~~~lV~~a 67 (103)
T PF13241_consen 6 KGKRVLVVGGGPVAARKARLLLEAGAKVTVISPEIEFSE-----GLIQLIRREFEEDLDGADLVFAA 67 (103)
T ss_dssp TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSEHHHH-----TSCEEEESS-GGGCTTESEEEE-
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCchhhhh-----hHHHHHhhhHHHHHhhheEEEec
Confidence 35788999997655544433333457888888421 222 56777766664356668887753
No 406
>PRK09126 hypothetical protein; Provisional
Probab=65.74 E-value=12 Score=26.10 Aligned_cols=30 Identities=17% Similarity=0.099 Sum_probs=25.6
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
.|+=||+|.+.++.++..+-.+.+++.+|.
T Consensus 5 dviIvGgG~aGl~~A~~L~~~G~~v~v~E~ 34 (392)
T PRK09126 5 DIVVVGAGPAGLSFARSLAGSGLKVTLIER 34 (392)
T ss_pred cEEEECcCHHHHHHHHHHHhCCCcEEEEeC
Confidence 588899999988888777767899999996
No 407
>PRK07045 putative monooxygenase; Reviewed
Probab=65.61 E-value=13 Score=25.88 Aligned_cols=32 Identities=9% Similarity=-0.075 Sum_probs=27.5
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
.-.|+=||+|.+.++.++..+..+.+++.+|.
T Consensus 5 ~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~ 36 (388)
T PRK07045 5 PVDVLINGSGIAGVALAHLLGARGHSVTVVER 36 (388)
T ss_pred eeEEEEECCcHHHHHHHHHHHhcCCcEEEEeC
Confidence 35799999999998888888778899999995
No 408
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=65.57 E-value=53 Score=25.08 Aligned_cols=64 Identities=17% Similarity=0.076 Sum_probs=38.2
Q ss_pred CCCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhC----C----------CCCCeeEEEecCCC--C----C
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATA----P----------THEGVSHVGGDMFD--A----I 79 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a----~----------~~~rv~~~~~d~~~--~----~ 79 (90)
..++++-.|+ +|.++..++++. .+.++++++. ++-.+.. . ...++.++.+|+.+ . +
T Consensus 79 ~gKvVLVTGA-TGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD~esI~~aL 157 (576)
T PLN03209 79 DEDLAFVAGA-TGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEKPDQIGPAL 157 (576)
T ss_pred CCCEEEEECC-CCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCCHHHHHHHh
Confidence 3456665554 677777666554 3567887776 4332211 0 12468999999987 2 2
Q ss_pred CcccEEEe
Q 034578 80 PNADAVFM 87 (90)
Q Consensus 80 p~~D~i~l 87 (90)
...|+++.
T Consensus 158 ggiDiVVn 165 (576)
T PLN03209 158 GNASVVIC 165 (576)
T ss_pred cCCCEEEE
Confidence 34687765
No 409
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=65.53 E-value=13 Score=24.29 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=24.0
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 27 MVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
|+=||+|.+.++.++.-+..+.+++.+|.
T Consensus 3 v~IiGaG~aGl~~A~~l~~~g~~v~vie~ 31 (295)
T TIGR02032 3 VVVVGAGPAGASAAYRLADKGLRVLLLEK 31 (295)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 77899998887777766667889999996
No 410
>PRK05868 hypothetical protein; Validated
Probab=65.38 E-value=11 Score=26.43 Aligned_cols=31 Identities=10% Similarity=-0.019 Sum_probs=24.6
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
.+|+=+|+|.+.++.++..+..+.+++++|.
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~ 32 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVER 32 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcC
Confidence 3688899999888777766666788888885
No 411
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=65.31 E-value=24 Score=23.21 Aligned_cols=60 Identities=22% Similarity=0.272 Sum_probs=36.8
Q ss_pred eEEEecCCchHHHHHHHHHCC--CCeEEEeeh-HHHHHh-CCCCCCeeEEEecCCCC-------CCcccEEEe
Q 034578 26 SMVDVGGGTGTVLAEIVKSYP--HIKGINFDL-QHVIAT-APTHEGVSHVGGDMFDA-------IPNADAVFM 87 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p--~~~~~~~D~-p~~~~~-a~~~~rv~~~~~d~~~~-------~p~~D~i~l 87 (90)
+++=+||| .++..+++... +-.++.+|. ++.++. +........+.+|-.++ +..+|+++.
T Consensus 2 ~iiIiG~G--~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAG--RVGRSVARELSEEGHNVVLIDRDEERVEEFLADELDTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEEECCc--HHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhcceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 35556665 45555555432 236888888 777766 33345577788888762 334788764
No 412
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=64.93 E-value=15 Score=26.37 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=24.1
Q ss_pred CeEEEecCCchHHH--HHHHHHCCCCeEEEeeh
Q 034578 25 RSMVDVGGGTGTVL--AEIVKSYPHIKGINFDL 55 (90)
Q Consensus 25 ~~vlDvG~G~G~~~--~~l~~~~p~~~~~~~D~ 55 (90)
.+|+=||+|.|.+. ..+++..|+.+++.+|.
T Consensus 2 ~~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~ 34 (438)
T PRK13512 2 PKIIVVGAVAGGATCASQIRRLDKESDIIIFEK 34 (438)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCCEEEEEC
Confidence 47999999988754 45556678899999985
No 413
>PRK06194 hypothetical protein; Provisional
Probab=64.77 E-value=28 Score=22.96 Aligned_cols=53 Identities=19% Similarity=0.070 Sum_probs=31.8
Q ss_pred CCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCC-----CCCCeeEEEecCCC
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAP-----THEGVSHVGGDMFD 77 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~-----~~~rv~~~~~d~~~ 77 (90)
..++|=.| |+|.++..+++++ .+.+++.+|. +...+... ...++.++.+|+.+
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~D~~d 66 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQGAEVLGVRTDVSD 66 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcCCeEEEEECCCCC
Confidence 35677555 4566666665543 3678888886 43332221 13468888999876
No 414
>KOG2811 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.23 E-value=27 Score=25.39 Aligned_cols=31 Identities=16% Similarity=0.188 Sum_probs=27.2
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEE---eeh
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGIN---FDL 55 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~---~D~ 55 (90)
..+++.|+|-|.++..+....+.-.++. +|.
T Consensus 184 ~~~vEFGAGrg~Ls~~vs~~l~~~~~~l~vlvdR 217 (420)
T KOG2811|consen 184 SCFVEFGAGRGELSRWVSDCLQIQNVYLFVLVDR 217 (420)
T ss_pred ceEEEecCCchHHHHHHHHHhccccEEEEEeecc
Confidence 6899999999999999999998877766 664
No 415
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=64.10 E-value=13 Score=26.71 Aligned_cols=29 Identities=17% Similarity=0.144 Sum_probs=24.5
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 27 MVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
|+=||+|+|.+..++..+..+.+++.+|.
T Consensus 3 vvVIGaGpaG~~aA~~aa~~g~~v~lie~ 31 (463)
T TIGR02053 3 LVIIGSGAAAFAAAIKAAELGASVAMVER 31 (463)
T ss_pred EEEECCCHHHHHHHHHHHHCCCeEEEEeC
Confidence 77899999888888877777889999984
No 416
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=63.88 E-value=20 Score=25.19 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=44.2
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC------CCCeeEEEecCCCCCCc-----ccEEE
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATAPT------HEGVSHVGGDMFDAIPN-----ADAVF 86 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~------~~rv~~~~~d~~~~~p~-----~D~i~ 86 (90)
..|+-+| -.-..+++++...-.-++.++|+ +..++...+ ..+++.+..|+.+|+|+ ||+++
T Consensus 154 K~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~ie~~~~Dlr~plpe~~~~kFDvfi 226 (354)
T COG1568 154 KEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNNIEAFVFDLRNPLPEDLKRKFDVFI 226 (354)
T ss_pred CeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccchhheeehhcccChHHHHhhCCeee
Confidence 5688888 56667777776665567888888 666654432 36799999999889885 78865
No 417
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=63.79 E-value=14 Score=27.39 Aligned_cols=32 Identities=31% Similarity=0.309 Sum_probs=24.4
Q ss_pred CeEEEecCC-chH-HHHHHHHHCCCCeEEEeehH
Q 034578 25 RSMVDVGGG-TGT-VLAEIVKSYPHIKGINFDLQ 56 (90)
Q Consensus 25 ~~vlDvG~G-~G~-~~~~l~~~~p~~~~~~~D~p 56 (90)
..|+-||+| .|. ++..|++..|..+++.+|..
T Consensus 46 ~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~ 79 (497)
T PTZ00383 46 YDVVIVGGGVTGTALFYTLSKFTNLKKIALIERR 79 (497)
T ss_pred ccEEEECccHHHHHHHHHHHhhCCCCEEEEEecC
Confidence 468999999 676 44455565688899999973
No 418
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=63.63 E-value=29 Score=24.78 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=35.4
Q ss_pred hhhhHHHHHhhcccCCCCCCCeEEEecCCchH--HHHHHHHHCCCCeEEEeeh
Q 034578 5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGTGT--VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~--~~~~l~~~~p~~~~~~~D~ 55 (90)
+..++-.+++.++. . ....++=+|+|... ++..+....|+.++++++.
T Consensus 161 QGTi~lEileq~~~--~-~d~v~vpvGGGGLisGia~~~k~~~p~~~vIGVEp 210 (347)
T COG1171 161 QGTIALEILEQLPD--L-PDAVFVPVGGGGLISGIATALKALSPEIKVIGVEP 210 (347)
T ss_pred ccHHHHHHHHhccc--c-CCEEEEecCccHHHHHHHHHHHHhCCCCeEEEEee
Confidence 34566777777773 2 35678888888544 6777788899999999995
No 419
>PRK08013 oxidoreductase; Provisional
Probab=63.54 E-value=13 Score=26.22 Aligned_cols=31 Identities=13% Similarity=0.070 Sum_probs=26.6
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
..|+=||+|...++.+++-+..+.+++.+|.
T Consensus 4 ~dV~IvGaGpaGl~~A~~La~~G~~v~viE~ 34 (400)
T PRK08013 4 VDVVIAGGGMVGLAVACGLQGSGLRVAVLEQ 34 (400)
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCEEEEEeC
Confidence 3589999999888888777777899999996
No 420
>PRK06370 mercuric reductase; Validated
Probab=63.50 E-value=14 Score=26.56 Aligned_cols=31 Identities=10% Similarity=-0.004 Sum_probs=25.8
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
-.|+=||+|+|.+..++..+.-+.+++.+|.
T Consensus 6 ~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~ 36 (463)
T PRK06370 6 YDAIVIGAGQAGPPLAARAAGLGMKVALIER 36 (463)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 3589999999998888877766889999984
No 421
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=63.41 E-value=9.6 Score=25.68 Aligned_cols=13 Identities=31% Similarity=0.792 Sum_probs=10.5
Q ss_pred CCCCeEEEecCCc
Q 034578 22 NNIRSMVDVGGGT 34 (90)
Q Consensus 22 ~~~~~vlDvG~G~ 34 (90)
.+...++|+|||+
T Consensus 111 ~~~~lviDIGGGS 123 (285)
T PF02541_consen 111 DKNGLVIDIGGGS 123 (285)
T ss_dssp TSSEEEEEEESSE
T ss_pred cCCEEEEEECCCc
Confidence 3556899999986
No 422
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=63.33 E-value=5.7 Score=26.99 Aligned_cols=33 Identities=12% Similarity=0.269 Sum_probs=18.6
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCe-EEEeeh-HH
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIK-GINFDL-QH 57 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~ 57 (90)
+..+++|||+|+-.+. +....+..+ ++..|. +.
T Consensus 56 ~g~~llDiGsGPtiy~--~lsa~~~f~~I~l~dy~~~ 90 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQ--LLSACEWFEEIVLSDYSEQ 90 (256)
T ss_dssp -EEEEEEES-TT--GG--GTTGGGTEEEEEEEESSHH
T ss_pred CCCEEEEeCCCcHHHh--hhhHHHhhcceEEeeccHh
Confidence 4578999999985542 333334443 677786 54
No 423
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=62.97 E-value=35 Score=25.46 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=45.1
Q ss_pred eEEEecCCchHHHHHHHHH-CCCCeEEEeeh-HHHHHhCC-----CCCCeeEEEecCCC-CCCc--ccEEEee
Q 034578 26 SMVDVGGGTGTVLAEIVKS-YPHIKGINFDL-QHVIATAP-----THEGVSHVGGDMFD-AIPN--ADAVFMK 88 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~-~p~~~~~~~D~-p~~~~~a~-----~~~rv~~~~~d~~~-~~p~--~D~i~l~ 88 (90)
+++-+|||.-.+...+-+. |+. ++.+|. +.+++... +++-.++...|... .++. +|+++.+
T Consensus 51 ~~l~lGCGNS~l~e~ly~~G~~d--I~~iD~S~V~V~~m~~~~~~~~~~~~~~~~d~~~l~fedESFdiVIdk 121 (482)
T KOG2352|consen 51 KILQLGCGNSELSEHLYKNGFED--ITNIDSSSVVVAAMQVRNAKERPEMQMVEMDMDQLVFEDESFDIVIDK 121 (482)
T ss_pred eeEeecCCCCHHHHHHHhcCCCC--ceeccccHHHHHHHHhccccCCcceEEEEecchhccCCCcceeEEEec
Confidence 8999999999999888876 344 566776 66665443 34568888889887 5653 8888764
No 424
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=62.95 E-value=23 Score=23.46 Aligned_cols=46 Identities=26% Similarity=0.348 Sum_probs=27.8
Q ss_pred CCchHHHHHHHHHC----CCCeEEEeeh-HH-----HHHhCCCCCCeeEEEecCCC
Q 034578 32 GGTGTVLAEIVKSY----PHIKGINFDL-QH-----VIATAPTHEGVSHVGGDMFD 77 (90)
Q Consensus 32 ~G~G~~~~~l~~~~----p~~~~~~~D~-p~-----~~~~a~~~~rv~~~~~d~~~ 77 (90)
||+|.++..++++. ++.+++++|. +. .++......+++++.+|+.+
T Consensus 6 GatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 61 (317)
T TIGR01181 6 GGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADLEDNPRYRFVKGDIGD 61 (317)
T ss_pred cCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhhccCCCcEEEEcCCcC
Confidence 56777777766654 3467888874 11 11111123478888999876
No 425
>PRK07538 hypothetical protein; Provisional
Probab=62.90 E-value=14 Score=26.02 Aligned_cols=30 Identities=20% Similarity=0.352 Sum_probs=25.0
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
.|+=||+|.+.++.++..+..+.+++++|.
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~ 31 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEA 31 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEc
Confidence 478899999998888776666888999996
No 426
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=62.85 E-value=17 Score=25.47 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=26.8
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
...|+=||+|.+.++.++..+-.+.+++++|.
T Consensus 18 ~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~ 49 (415)
T PRK07364 18 TYDVAIVGGGIVGLTLAAALKDSGLRIALIEA 49 (415)
T ss_pred ccCEEEECcCHHHHHHHHHHhcCCCEEEEEec
Confidence 35699999999988888777777889999996
No 427
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=62.84 E-value=11 Score=24.98 Aligned_cols=48 Identities=21% Similarity=0.241 Sum_probs=33.2
Q ss_pred EEEecCCchHHHHHHHHHCC--CCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC
Q 034578 27 MVDVGGGTGTVLAEIVKSYP--HIKGINFDL-QHVIATAPTHEGVSHVGGDMFD 77 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p--~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~ 77 (90)
||=.|+ +|.++..++++.- +.++.++|. +....... .+++++.+|..+
T Consensus 3 ILVtG~-tGfiG~~l~~~L~~~g~~V~~~~r~~~~~~~~~--~~~~~~~~d~~~ 53 (314)
T COG0451 3 ILVTGG-AGFIGSHLVERLLAAGHDVRGLDRLRDGLDPLL--SGVEFVVLDLTD 53 (314)
T ss_pred EEEEcC-cccHHHHHHHHHHhCCCeEEEEeCCCccccccc--cccceeeecccc
Confidence 555665 9999999988865 568999996 33322222 567788888766
No 428
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=62.55 E-value=16 Score=26.64 Aligned_cols=31 Identities=26% Similarity=0.391 Sum_probs=20.1
Q ss_pred eEEEecCCchH--HHHHHHHHCCC-CeEEEeehH
Q 034578 26 SMVDVGGGTGT--VLAEIVKSYPH-IKGINFDLQ 56 (90)
Q Consensus 26 ~vlDvG~G~G~--~~~~l~~~~p~-~~~~~~D~p 56 (90)
.|+=||+|+.. .+..|++.+|. ++++.++.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~~~~~~~v~lie~~ 34 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARAGPDALSVTLIESP 34 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHHCTCSSEEEEEE-S
T ss_pred CEEEECCCHHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 47889999655 44555666777 999999953
No 429
>PRK07588 hypothetical protein; Provisional
Probab=62.28 E-value=14 Score=25.72 Aligned_cols=30 Identities=7% Similarity=-0.124 Sum_probs=24.8
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
.|+=||+|.+.++.++.-+..+.+++.+|.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~ 31 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIER 31 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeC
Confidence 578899999988777776667888999995
No 430
>PRK06180 short chain dehydrogenase; Provisional
Probab=62.25 E-value=25 Score=23.23 Aligned_cols=52 Identities=8% Similarity=-0.057 Sum_probs=33.0
Q ss_pred CeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCC--CCCeeEEEecCCC
Q 034578 25 RSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPT--HEGVSHVGGDMFD 77 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~d~~~ 77 (90)
.++|-.|+ +|.++.++++++ .+.++++++. ++.++...+ ..++.++..|+.+
T Consensus 5 ~~vlVtGa-sggiG~~la~~l~~~G~~V~~~~r~~~~~~~l~~~~~~~~~~~~~D~~d 61 (277)
T PRK06180 5 KTWLITGV-SSGFGRALAQAALAAGHRVVGTVRSEAARADFEALHPDRALARLLDVTD 61 (277)
T ss_pred CEEEEecC-CChHHHHHHHHHHhCcCEEEEEeCCHHHHHHHHhhcCCCeeEEEccCCC
Confidence 45776665 556666666553 3678888987 554433222 3567888888875
No 431
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=62.17 E-value=18 Score=25.85 Aligned_cols=33 Identities=9% Similarity=-0.106 Sum_probs=23.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
+..+|+=||+|.|.+........++.+++.+|.
T Consensus 9 ~~~~vVIvGgG~aGl~~a~~L~~~~~~ItlI~~ 41 (424)
T PTZ00318 9 KKPNVVVLGTGWAGAYFVRNLDPKKYNITVISP 41 (424)
T ss_pred CCCeEEEECCCHHHHHHHHHhCcCCCeEEEEcC
Confidence 456899999999886654333334678999983
No 432
>PLN02356 phosphateglycerate kinase
Probab=62.16 E-value=36 Score=24.88 Aligned_cols=43 Identities=23% Similarity=0.174 Sum_probs=29.2
Q ss_pred hHHHHHhhcccCCCCCCCeEEEecCCchH----HHHHHHHHCCCCeEEEeeh
Q 034578 8 TMKAFVSHYKVDGFNNIRSMVDVGGGTGT----VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~p~~~~~~~D~ 55 (90)
.+..|++.+++ . -..+=+++|+|. ++..+.+.+|+++++++|.
T Consensus 239 Tg~EI~eQl~g----~-~D~vVv~vGtGGti~Gva~~lK~~~P~vkVigVep 285 (423)
T PLN02356 239 TGPEIWEQTQG----N-LDAFVAAAGTGGTLAGVSRFLQEKNPNIKCFLIDP 285 (423)
T ss_pred HHHHHHHhcCC----C-CCEEEeCCCchHHHHHHHHHHHHhCCCCEEEEEec
Confidence 46777776652 1 234556666666 4556777789999999995
No 433
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=61.96 E-value=20 Score=24.81 Aligned_cols=32 Identities=16% Similarity=0.092 Sum_probs=27.2
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
...|+=||+|.+.++.++.....+.+++.+|.
T Consensus 5 ~~dv~IvGgG~aGl~~A~~L~~~G~~v~v~E~ 36 (388)
T PRK07608 5 KFDVVVVGGGLVGASLALALAQSGLRVALLAP 36 (388)
T ss_pred cCCEEEECcCHHHHHHHHHHHhCCCeEEEEec
Confidence 34699999999988888887777899999996
No 434
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=61.86 E-value=17 Score=24.39 Aligned_cols=52 Identities=10% Similarity=0.078 Sum_probs=31.0
Q ss_pred CeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHH---HHh----CCCCCCeeEEEecCCC
Q 034578 25 RSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHV---IAT----APTHEGVSHVGGDMFD 77 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~---~~~----a~~~~rv~~~~~d~~~ 77 (90)
.+||=.|+ +|.++..++++. .+.++++++. +.. ... ....++++++.+|+.+
T Consensus 5 ~~ilVtGa-tGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 66 (322)
T PLN02662 5 KVVCVTGA-SGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLE 66 (322)
T ss_pred CEEEEECC-hHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccC
Confidence 45665554 788877777664 2456666654 221 111 0113578999999987
No 435
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=61.67 E-value=17 Score=24.95 Aligned_cols=29 Identities=21% Similarity=0.220 Sum_probs=24.3
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 27 MVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
|+=||+|.+.++.++.-+..+.+++++|.
T Consensus 2 ViIvGaG~aGl~~A~~L~~~G~~v~v~Er 30 (385)
T TIGR01988 2 IVIVGGGMVGLALALALARSGLKIALIEA 30 (385)
T ss_pred EEEECCCHHHHHHHHHHhcCCCEEEEEeC
Confidence 67799999888887777777899999996
No 436
>PRK06482 short chain dehydrogenase; Provisional
Probab=61.66 E-value=24 Score=23.18 Aligned_cols=51 Identities=6% Similarity=-0.063 Sum_probs=32.7
Q ss_pred eEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCC--CCCeeEEEecCCC
Q 034578 26 SMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPT--HEGVSHVGGDMFD 77 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~d~~~ 77 (90)
++|= -||+|.++..++++. .+.++++++. ++.++..++ ..++.++..|+.+
T Consensus 4 ~vlV-tGasg~IG~~la~~L~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~D~~~ 59 (276)
T PRK06482 4 TWFI-TGASSGFGRGMTERLLARGDRVAATVRRPDALDDLKARYGDRLWVLQLDVTD 59 (276)
T ss_pred EEEE-ecCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCceEEEEccCCC
Confidence 4564 445777777777664 3567888887 554443222 3578888999876
No 437
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=61.65 E-value=16 Score=25.53 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=25.8
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
.|+=||+|.+.++.+++-+..+.+++.+|.
T Consensus 3 dV~IvGgG~~Gl~~A~~L~~~G~~v~l~E~ 32 (374)
T PRK06617 3 NTVILGCGLSGMLTALSFAQKGIKTTIFES 32 (374)
T ss_pred cEEEECCCHHHHHHHHHHHcCCCeEEEecC
Confidence 488899999998888887777889999995
No 438
>PRK04663 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=61.52 E-value=35 Score=24.55 Aligned_cols=62 Identities=23% Similarity=0.200 Sum_probs=37.3
Q ss_pred CeEEEecC-CchHHHHHHHHHCCC-CeEEEeeh-H--HHHHhCCCCCCeeEEEecCCC-CCCcccEEEee
Q 034578 25 RSMVDVGG-GTGTVLAEIVKSYPH-IKGINFDL-Q--HVIATAPTHEGVSHVGGDMFD-AIPNADAVFMK 88 (90)
Q Consensus 25 ~~vlDvG~-G~G~~~~~l~~~~p~-~~~~~~D~-p--~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l~ 88 (90)
.+++=+|. |+|.-+.+++.+... .++++.|. + ...+.-+ ..+++..+.... .++++|+|+.+
T Consensus 8 ~~v~viG~G~sG~s~~~~l~~~~~~~~v~~~D~~~~~~~~~~l~--~g~~~~~g~~~~~~~~~~d~vV~S 75 (438)
T PRK04663 8 KNVVVVGLGITGLSVVKHLRKYQPQLTVKVIDTRETPPGQEQLP--EDVELHSGGWNLEWLLEADLVVTN 75 (438)
T ss_pred ceEEEEeccHHHHHHHHHHHhcCCCCeEEEEeCCCCchhHHHhh--cCCEEEeCCCChHHhccCCEEEEC
Confidence 45555554 488877777777654 88999996 3 2222111 256666564332 35568888765
No 439
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=61.52 E-value=39 Score=21.44 Aligned_cols=53 Identities=8% Similarity=-0.046 Sum_probs=33.4
Q ss_pred CCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhC----CCCCCeeEEEecCCC
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATA----PTHEGVSHVGGDMFD 77 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a----~~~~rv~~~~~d~~~ 77 (90)
.++++-.|+ +|.++..+++.+ .+.++++.+. ++..+.. ....++.++.+|+.+
T Consensus 5 ~~~vlItGa-~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 64 (238)
T PRK05786 5 GKKVAIIGV-SEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYGNIHYVVGDVSS 64 (238)
T ss_pred CcEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCeEEEECCCCC
Confidence 357777776 455555555543 4678888887 5433222 223468888999876
No 440
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=61.11 E-value=20 Score=24.97 Aligned_cols=32 Identities=13% Similarity=0.047 Sum_probs=26.0
Q ss_pred CCeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
.-.|+=||+|.+.++.++.-+..+.+++.+|.
T Consensus 5 ~~dViIvGgG~aGl~~A~~La~~G~~V~liE~ 36 (391)
T PRK08020 5 PTDIAIVGGGMVGAALALGLAQHGFSVAVLEH 36 (391)
T ss_pred cccEEEECcCHHHHHHHHHHhcCCCEEEEEcC
Confidence 34688899999987777777666889999996
No 441
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=60.94 E-value=23 Score=22.85 Aligned_cols=46 Identities=15% Similarity=0.075 Sum_probs=27.5
Q ss_pred CCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCC--CCCeeEEEecCCC
Q 034578 32 GGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPT--HEGVSHVGGDMFD 77 (90)
Q Consensus 32 ~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~d~~~ 77 (90)
||+|.++..+++++ .+.++++++. +.-++.... ..++.++.+|+.+
T Consensus 7 Gasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~ 57 (248)
T PRK10538 7 GATAGFGECITRRFIQQGHKVIATGRRQERLQELKDELGDNLYIAQLDVRN 57 (248)
T ss_pred CCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhccceEEEEecCCC
Confidence 45666666666554 3567888887 543332211 2467778888865
No 442
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=60.79 E-value=18 Score=24.95 Aligned_cols=29 Identities=24% Similarity=0.184 Sum_probs=24.8
Q ss_pred EEEecCCchHHHHHHHHHCCC-CeEEEeeh
Q 034578 27 MVDVGGGTGTVLAEIVKSYPH-IKGINFDL 55 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~ 55 (90)
|+=||+|.+.++.++..+-.+ .+++.+|.
T Consensus 2 v~IvGaG~aGl~~A~~L~~~G~~~v~v~E~ 31 (382)
T TIGR01984 2 VIIVGGGLVGLSLALALSRLGKIKIALIEA 31 (382)
T ss_pred EEEECccHHHHHHHHHHhcCCCceEEEEeC
Confidence 678999999888887777777 99999996
No 443
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=60.62 E-value=41 Score=21.44 Aligned_cols=40 Identities=20% Similarity=0.244 Sum_probs=29.2
Q ss_pred CCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhC
Q 034578 22 NNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATA 62 (90)
Q Consensus 22 ~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a 62 (90)
.+..+++..|+|+ |.....+++... .++++.+. +...+.+
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g-~~v~~~~~~~~~~~~~ 174 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAG-ARVIVTDRSDEKLELA 174 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcC-CeEEEEcCCHHHHHHH
Confidence 4567899999985 777777887754 78888886 5554444
No 444
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=60.44 E-value=19 Score=24.00 Aligned_cols=56 Identities=16% Similarity=0.220 Sum_probs=35.6
Q ss_pred CCCCeEEEecCCchH---HHHHHHHH-CCCCeEEEeehH--HHHHhCCCCCCeeEEEecCCC
Q 034578 22 NNIRSMVDVGGGTGT---VLAEIVKS-YPHIKGINFDLQ--HVIATAPTHEGVSHVGGDMFD 77 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~---~~~~l~~~-~p~~~~~~~D~p--~~~~~a~~~~rv~~~~~d~~~ 77 (90)
.++..|.+.|.-.|. +....... ....+++++|+. ..-..|++.+++.|+.|+-.+
T Consensus 68 ~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e~p~i~f~egss~d 129 (237)
T COG3510 68 LQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAAREVPDILFIEGSSTD 129 (237)
T ss_pred cCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhcCCCeEEEeCCCCC
Confidence 357899999975554 33333333 345788888862 212334457889999988765
No 445
>PRK06116 glutathione reductase; Validated
Probab=60.37 E-value=17 Score=26.02 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=24.8
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
-++=||+|+|.+..++..+.-..+++.+|.
T Consensus 6 DvvVIG~GpaG~~aA~~~a~~G~~V~liE~ 35 (450)
T PRK06116 6 DLIVIGGGSGGIASANRAAMYGAKVALIEA 35 (450)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCeEEEEec
Confidence 488999999888777777666889999994
No 446
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=60.34 E-value=47 Score=22.80 Aligned_cols=34 Identities=18% Similarity=0.134 Sum_probs=28.1
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHH
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHV 58 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~ 58 (90)
...+||-=|||-|.++-+++++ +.++.+-|. -.|
T Consensus 56 ~~~~VLVPGsGLGRLa~Eia~~--G~~~~gnE~S~~M 90 (270)
T PF07942_consen 56 SKIRVLVPGSGLGRLAWEIAKL--GYAVQGNEFSYFM 90 (270)
T ss_pred CccEEEEcCCCcchHHHHHhhc--cceEEEEEchHHH
Confidence 3478999999999999999998 667788886 444
No 447
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=60.33 E-value=18 Score=25.46 Aligned_cols=31 Identities=13% Similarity=0.217 Sum_probs=26.7
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
..|+=||+|.+.++.++.-+..+.+++++|.
T Consensus 3 ~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~ 33 (390)
T TIGR02360 3 TQVAIIGAGPSGLLLGQLLHKAGIDNVILER 33 (390)
T ss_pred ceEEEECccHHHHHHHHHHHHCCCCEEEEEC
Confidence 4689999999998888877777899999997
No 448
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=60.11 E-value=40 Score=24.28 Aligned_cols=65 Identities=17% Similarity=0.187 Sum_probs=34.3
Q ss_pred CCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHH-HHhCCCCCCeeEEE-ecCCCCCCcccEEEee
Q 034578 23 NIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHV-IATAPTHEGVSHVG-GDMFDAIPNADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~-~~~a~~~~rv~~~~-~d~~~~~p~~D~i~l~ 88 (90)
...+++-+|+| .|......+......++++.+. +.- .+.+++.+. ..+. .|..+.+..+|+|+..
T Consensus 181 ~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~~~ra~~la~~~g~-~~~~~~~~~~~l~~aDvVI~a 249 (423)
T PRK00045 181 SGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRTLERAEELAEEFGG-EAIPLDELPEALAEADIVISS 249 (423)
T ss_pred cCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHcCC-cEeeHHHHHHHhccCCEEEEC
Confidence 35789999986 4545555455444346888887 543 223333221 1222 2332234557887753
No 449
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=59.96 E-value=16 Score=25.81 Aligned_cols=30 Identities=20% Similarity=0.304 Sum_probs=23.5
Q ss_pred eEEEecCCchHHHHHHHHHC-CCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSY-PHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~-p~~~~~~~D~ 55 (90)
+|+=||+|.+.++.+++-+. .+.+++++|.
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er 32 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEA 32 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEec
Confidence 58889999988777776554 4568999986
No 450
>PRK08177 short chain dehydrogenase; Provisional
Probab=59.90 E-value=16 Score=23.20 Aligned_cols=51 Identities=14% Similarity=0.007 Sum_probs=26.8
Q ss_pred eEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC
Q 034578 26 SMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD 77 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~ 77 (90)
+++=.|+ +|.++..+++++ .+.++++++. +.-.+..++..++.+...|+.+
T Consensus 3 ~vlItG~-sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~D~~d 56 (225)
T PRK08177 3 TALIIGA-SRGLGLGLVDRLLERGWQVTATVRGPQQDTALQALPGVHIEKLDMND 56 (225)
T ss_pred EEEEeCC-CchHHHHHHHHHHhCCCEEEEEeCCCcchHHHHhccccceEEcCCCC
Confidence 4554444 566555555543 2457787886 4333222223456666667654
No 451
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=59.89 E-value=46 Score=21.68 Aligned_cols=64 Identities=20% Similarity=0.215 Sum_probs=37.3
Q ss_pred CCCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhC-CCCCCeeEEEecCCCC-------C-CcccEEEe
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATA-PTHEGVSHVGGDMFDA-------I-PNADAVFM 87 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a-~~~~rv~~~~~d~~~~-------~-p~~D~i~l 87 (90)
+..+++-+|+ +|.++..++++. .+.+++++.. +.-.... ....+++++.+|+.+. + ...|+++.
T Consensus 16 ~~~~ilItGa-sG~iG~~l~~~L~~~g~~V~~~~R~~~~~~~~~~~~~~~~~~~~Dl~d~~~~l~~~~~~~~d~vi~ 91 (251)
T PLN00141 16 KTKTVFVAGA-TGRTGKRIVEQLLAKGFAVKAGVRDVDKAKTSLPQDPSLQIVRADVTEGSDKLVEAIGDDSDAVIC 91 (251)
T ss_pred cCCeEEEECC-CcHHHHHHHHHHHhCCCEEEEEecCHHHHHHhcccCCceEEEEeeCCCCHHHHHHHhhcCCCEEEE
Confidence 4567888886 555555554442 2456777665 4433221 2235789999998752 2 23677764
No 452
>PRK06949 short chain dehydrogenase; Provisional
Probab=59.75 E-value=44 Score=21.48 Aligned_cols=53 Identities=11% Similarity=0.006 Sum_probs=32.8
Q ss_pred CCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCC-----CCCCeeEEEecCCC
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAP-----THEGVSHVGGDMFD 77 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~-----~~~rv~~~~~d~~~ 77 (90)
..+++-.| |+|.++..+++.+ .+.++++++. ++-++... ...++.++..|+.+
T Consensus 9 ~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~ 69 (258)
T PRK06949 9 GKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEGGAAHVVSLDVTD 69 (258)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEecCCC
Confidence 46677776 4666666666554 3567888886 54333221 13568888888865
No 453
>PRK07023 short chain dehydrogenase; Provisional
Probab=59.71 E-value=27 Score=22.44 Aligned_cols=51 Identities=20% Similarity=0.224 Sum_probs=29.1
Q ss_pred eEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC
Q 034578 26 SMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD 77 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~ 77 (90)
++|-.| |+|.++..+++++ .+.++++++. +.-........++.++..|+.+
T Consensus 3 ~vlItG-asggiG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~ 56 (243)
T PRK07023 3 RAIVTG-HSRGLGAALAEQLLQPGIAVLGVARSRHPSLAAAAGERLAEVELDLSD 56 (243)
T ss_pred eEEEec-CCcchHHHHHHHHHhCCCEEEEEecCcchhhhhccCCeEEEEEeccCC
Confidence 456556 4666666666664 3567777775 2211111223467778888765
No 454
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=59.66 E-value=19 Score=25.77 Aligned_cols=30 Identities=10% Similarity=-0.026 Sum_probs=24.2
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
.|+=||+|+|.+..+...+..+.+++.+|.
T Consensus 5 dvvVIG~GpaG~~aA~~l~~~g~~V~liE~ 34 (438)
T PRK07251 5 DLIVIGFGKAGKTLAAKLASAGKKVALVEE 34 (438)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCEEEEEec
Confidence 488999999887777666667788888885
No 455
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=59.62 E-value=16 Score=25.63 Aligned_cols=31 Identities=10% Similarity=0.071 Sum_probs=26.4
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
..|+=||+|.+.++.+++-...+.+++.+|.
T Consensus 5 ~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~ 35 (405)
T PRK08850 5 VDVAIIGGGMVGLALAAALKESDLRIAVIEG 35 (405)
T ss_pred CCEEEECccHHHHHHHHHHHhCCCEEEEEcC
Confidence 4699999999988888777777899999996
No 456
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=59.56 E-value=18 Score=25.40 Aligned_cols=30 Identities=13% Similarity=0.100 Sum_probs=26.2
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
.|+=||+|.+.++.+++-+..+.+++++|.
T Consensus 4 dV~IVGaG~aGl~~A~~L~~~G~~v~viE~ 33 (405)
T PRK05714 4 DLLIVGAGMVGSALALALQGSGLEVLLLDG 33 (405)
T ss_pred cEEEECccHHHHHHHHHHhcCCCEEEEEcC
Confidence 589999999998888887777899999996
No 457
>PRK08639 threonine dehydratase; Validated
Probab=59.44 E-value=36 Score=24.55 Aligned_cols=48 Identities=19% Similarity=0.147 Sum_probs=29.8
Q ss_pred hhhHHHHHhhcccCCCC-CCCeEEEecCCch--HHHHHHHHHCCCCeEEEeeh
Q 034578 6 KITMKAFVSHYKVDGFN-NIRSMVDVGGGTG--TVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~-~~~~vlDvG~G~G--~~~~~l~~~~p~~~~~~~D~ 55 (90)
..++..+++.+++ .. ...-|+=+|+|.- .++..+....|+.++++++.
T Consensus 164 ~tig~EI~eq~~~--~~~~D~vv~~vG~GG~~aGva~~~k~~~p~~~vigVep 214 (420)
T PRK08639 164 GTVAVEILEQLEK--EGSPDYVFVPVGGGGLISGVTTYLKERSPKTKIIGVEP 214 (420)
T ss_pred hHHHHHHHHhccc--cCCCCEEEEecChhHHHHHHHHHHHHhCCCCEEEEEEE
Confidence 4567777777762 10 1234444555422 25566777789999999995
No 458
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=59.43 E-value=7.9 Score=28.88 Aligned_cols=64 Identities=17% Similarity=0.288 Sum_probs=38.6
Q ss_pred CCCCCeEEEecCCchHHHHHHHHHCCCCeEEEeeh-----HHHHHhCCCCCCeeEEEecCCCC---CCc-ccEEEeec
Q 034578 21 FNNIRSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-----QHVIATAPTHEGVSHVGGDMFDA---IPN-ADAVFMKV 89 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-----p~~~~~a~~~~rv~~~~~d~~~~---~p~-~D~i~l~~ 89 (90)
....+.|+|..+|.|.|+.+|.+. | +.+... |..+...-.++=+-. -+|+-++ .|. ||++-..+
T Consensus 363 ~~~iRNVMDMnAg~GGFAAAL~~~-~---VWVMNVVP~~~~ntL~vIydRGLIG~-yhDWCE~fsTYPRTYDLlHA~~ 435 (506)
T PF03141_consen 363 WGRIRNVMDMNAGYGGFAAALIDD-P---VWVMNVVPVSGPNTLPVIYDRGLIGV-YHDWCEAFSTYPRTYDLLHADG 435 (506)
T ss_pred ccceeeeeeecccccHHHHHhccC-C---ceEEEecccCCCCcchhhhhcccchh-ccchhhccCCCCcchhheehhh
Confidence 345689999999999999999763 3 333332 333333333332332 3567664 354 88876543
No 459
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=59.38 E-value=18 Score=26.18 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=25.5
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
.|+=||+|+|.+..++....-+.+++.+|.
T Consensus 5 DvvVIG~GpaG~~AA~~aa~~G~~V~liE~ 34 (466)
T PRK06115 5 DVVIIGGGPGGYNAAIRAGQLGLKVACVEG 34 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 488999999998888887777889999984
No 460
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=59.38 E-value=17 Score=25.46 Aligned_cols=31 Identities=13% Similarity=0.007 Sum_probs=26.2
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
..|+=||+|.+.++.+++-+..+.+++.+|.
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~ 34 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVAVIEG 34 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEEEEcC
Confidence 3589999999998888877767899999995
No 461
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=59.35 E-value=26 Score=22.50 Aligned_cols=52 Identities=21% Similarity=0.160 Sum_probs=33.3
Q ss_pred CeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCC-----CCCCeeEEEecCCC
Q 034578 25 RSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAP-----THEGVSHVGGDMFD 77 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~-----~~~rv~~~~~d~~~ 77 (90)
+++|=.| |+|.++..+++++ .+.++++++. +...+... ...++.++.+|+.+
T Consensus 5 ~~vlItG-~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 64 (258)
T PRK12429 5 KVALVTG-AASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAGGKAIGVAMDVTD 64 (258)
T ss_pred CEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCC
Confidence 4566444 5777777777764 3567888886 44332221 13578888899876
No 462
>PRK14045 1-aminocyclopropane-1-carboxylate deaminase; Provisional
Probab=59.34 E-value=32 Score=23.87 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=19.2
Q ss_pred EEEecCCchHHHH----HHHHHCCCCeEEEeeh
Q 034578 27 MVDVGGGTGTVLA----EIVKSYPHIKGINFDL 55 (90)
Q Consensus 27 vlDvG~G~G~~~~----~l~~~~p~~~~~~~D~ 55 (90)
.+=+++|+|.... .+....|+.++++++.
T Consensus 187 ~vv~~vGtGGt~aGi~~~lk~~~~~~kVigv~~ 219 (329)
T PRK14045 187 SIVVAVGSGGTLAGLSLGLAILNAEWRVVGIAV 219 (329)
T ss_pred EEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 3445556665444 4444569999999996
No 463
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=59.31 E-value=32 Score=22.23 Aligned_cols=52 Identities=17% Similarity=0.126 Sum_probs=31.1
Q ss_pred CeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCC-----C--CCCeeEEEecCCC
Q 034578 25 RSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAP-----T--HEGVSHVGGDMFD 77 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~-----~--~~rv~~~~~d~~~ 77 (90)
+++|-.|+ +|.++..+++++ .+.+++.+|. +...+... . ..++.++..|+.+
T Consensus 3 k~ilItG~-~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (259)
T PRK12384 3 QVAVVIGG-GQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS 64 (259)
T ss_pred CEEEEECC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC
Confidence 35666675 566666666554 3578888886 43322111 1 1468888888875
No 464
>KOG1250 consensus Threonine/serine dehydratases [Amino acid transport and metabolism]
Probab=59.20 E-value=36 Score=25.05 Aligned_cols=48 Identities=21% Similarity=0.265 Sum_probs=36.2
Q ss_pred hhhhHHHHHhhcccCCCCCCCeEEEecCCc--hHHHHHHHHHCCCCeEEEeeh
Q 034578 5 TKITMKAFVSHYKVDGFNNIRSMVDVGGGT--GTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~vlDvG~G~--G~~~~~l~~~~p~~~~~~~D~ 55 (90)
+..++..|++.++ .....-++-||||- ..++..+.+-.|+.++++++.
T Consensus 201 qgTig~EIl~ql~---~~~~AI~vpVGGGGLiaGIat~vk~~~p~vkIIGVEt 250 (457)
T KOG1250|consen 201 QGTIGLEILEQLK---EPDGAIVVPVGGGGLIAGIATGVKRVGPHVKIIGVET 250 (457)
T ss_pred cchHHHHHHHhhc---CCCCeEEEecCCchhHHHHHHHHHHhCCCCceEEEee
Confidence 3456778888887 33447788999873 236777888889999999996
No 465
>PTZ00117 malate dehydrogenase; Provisional
Probab=59.07 E-value=33 Score=23.75 Aligned_cols=64 Identities=17% Similarity=0.317 Sum_probs=36.5
Q ss_pred CCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHH-----h--CCC--CCCeeEEE-ecCCCCCCcccEEEee
Q 034578 24 IRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIA-----T--APT--HEGVSHVG-GDMFDAIPNADAVFMK 88 (90)
Q Consensus 24 ~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~-----~--a~~--~~rv~~~~-~d~~~~~p~~D~i~l~ 88 (90)
..+|.=+|+|+ |.-...++....-..++.+|+ ++..+ . +.. ..+.++.. +|+ +.+.++|+|++.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~~~~~g~~lDl~~~~~~~~~~~~i~~~~d~-~~l~~ADiVVit 80 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIKGVPQGKALDLKHFSTLVGSNINILGTNNY-EDIKDSDVVVIT 80 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCCccchhHHHHHhhhccccCCCeEEEeCCCH-HHhCCCCEEEEC
Confidence 45789999988 776555555544357889998 43211 1 111 11233332 343 356668998864
No 466
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=58.99 E-value=25 Score=23.73 Aligned_cols=38 Identities=11% Similarity=0.218 Sum_probs=22.1
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh-HHHHHhC
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL-QHVIATA 62 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a 62 (90)
.+|.=||+|.=..+.+..-...+.+++++|. ++.++.+
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~ 42 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKA 42 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHH
Confidence 4677888874332222222223567999998 6665544
No 467
>PF01358 PARP_regulatory: Poly A polymerase regulatory subunit; InterPro: IPR000176 This family contains viral proteins that are bifunctional, acting as both an mRNA cap-specific RNA 2'-O-methyltransferase, which methylates the ribose 2' OH group of the first transcribed nucleotide, thereby producing a 2'-o-methylpurine cap and a poly(A) polymerase processivity factor which binds to Poly(A) but has no catalytic activity. The structure of this protein is known [].; GO: 0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity, 0006370 mRNA capping, 0006397 mRNA processing; PDB: 4DCG_A 1B42_A 3ERC_A 1AV6_A 2VP3_A 1JTF_A 1JTE_A 1VP3_A 3ER9_A 1P39_A ....
Probab=58.94 E-value=18 Score=25.16 Aligned_cols=53 Identities=19% Similarity=0.328 Sum_probs=33.5
Q ss_pred CCCeEEEecCCchHHHHHHHHHCCCCe----EEEeeh-HHHHHhCCCCCCeeEEEecCCC
Q 034578 23 NIRSMVDVGGGTGTVLAEIVKSYPHIK----GINFDL-QHVIATAPTHEGVSHVGGDMFD 77 (90)
Q Consensus 23 ~~~~vlDvG~G~G~~~~~l~~~~p~~~----~~~~D~-p~~~~~a~~~~rv~~~~~d~~~ 77 (90)
+...||=+|.+.|....-|.+.||+++ .+.+|. |... ..++-.+++++. ++++
T Consensus 58 ~~~~VVYiGsApG~Hi~~L~~lf~~~~~~i~wvLiDp~~f~~-~l~~l~~v~l~~-~fft 115 (294)
T PF01358_consen 58 GPVTVVYIGSAPGTHIPFLFDLFPDLKVPIKWVLIDPRPFCI-SLEELSNVTLIQ-RFFT 115 (294)
T ss_dssp T-EEEEEES-SS-HHHHHHHHHHHHTT--EEEEEEESS---G-GGTT-TTEEEEE-S---
T ss_pred CceEEEEecCCCcchHHHHHHHHHhcCCceEEEEECCcchhh-hhcccCcEEeeh-hhCC
Confidence 456899999999999999999999865 899997 5543 233444577764 4554
No 468
>TIGR01118 lacA galactose-6-phosphate isomerase, LacA subunit. This family contains members from low GC gram-positive bacteria. Galactose-6-phosphate isomerase is involved in lactose catabolism by the tagatose-6-phosphate pathway.
Probab=58.88 E-value=11 Score=23.38 Aligned_cols=33 Identities=3% Similarity=-0.090 Sum_probs=21.0
Q ss_pred CCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC
Q 034578 32 GGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT 64 (90)
Q Consensus 32 ~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~ 64 (90)
||||.=..-.+.++|++++...--+...+.+++
T Consensus 63 CGtGiG~siaANK~~GIRAA~~~d~~~A~~ar~ 95 (141)
T TIGR01118 63 DAYGAGSFMVATKIKGMIAAEVSDERSAYMTRG 95 (141)
T ss_pred cCCCHhHhhhhhcCCCeEEEEECCHHHHHHHHH
Confidence 566664555566788888655443666666665
No 469
>PRK08264 short chain dehydrogenase; Validated
Probab=58.88 E-value=36 Score=21.66 Aligned_cols=51 Identities=12% Similarity=0.024 Sum_probs=31.9
Q ss_pred CCeEEEecCCchHHHHHHHHHC--CCC-eEEEeeh-HHHHHhCCCCCCeeEEEecCCC
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSY--PHI-KGINFDL-QHVIATAPTHEGVSHVGGDMFD 77 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~--p~~-~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~ 77 (90)
..+++=.|+ +|.++..+++.+ .+. +++.++. +...+. ...++.++..|+.+
T Consensus 6 ~~~vlItGg-sg~iG~~la~~l~~~G~~~V~~~~r~~~~~~~--~~~~~~~~~~D~~~ 60 (238)
T PRK08264 6 GKVVLVTGA-NRGIGRAFVEQLLARGAAKVYAAARDPESVTD--LGPRVVPLQLDVTD 60 (238)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCcccEEEEecChhhhhh--cCCceEEEEecCCC
Confidence 356777775 666666655543 245 7788886 443332 33568888888876
No 470
>COG5023 Tubulin [Cytoskeleton]
Probab=58.85 E-value=19 Score=26.19 Aligned_cols=35 Identities=26% Similarity=0.619 Sum_probs=24.6
Q ss_pred CCCCCeEEEecCCchH-----HHHHHHHHCCCCeEEEeeh
Q 034578 21 FNNIRSMVDVGGGTGT-----VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~-----~~~~l~~~~p~~~~~~~D~ 55 (90)
+++....=-+|||||+ ++.+|+.+||+-...-+-.
T Consensus 130 LqGF~l~HS~gGGTGSG~GslLLerl~~eypkK~~~tfSV 169 (443)
T COG5023 130 LQGFLLLHSLGGGTGSGLGSLLLERLREEYPKKIKLTFSV 169 (443)
T ss_pred ccceeeeeeccCcCcccHHHHHHHHHHHhcchhheeEEEe
Confidence 5666667788999886 6677888898765444443
No 471
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=58.79 E-value=17 Score=28.00 Aligned_cols=30 Identities=27% Similarity=0.174 Sum_probs=25.7
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
-++=||||+|.+..++...--++++..+|.
T Consensus 118 DviVIG~G~gG~~aA~~aa~~G~kV~lie~ 147 (659)
T PTZ00153 118 DVGIIGCGVGGHAAAINAMERGLKVIIFTG 147 (659)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEeC
Confidence 489999999998888877777899999984
No 472
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=58.51 E-value=20 Score=25.40 Aligned_cols=36 Identities=19% Similarity=0.414 Sum_probs=27.0
Q ss_pred CCCCeEEEecCCchH-HHHHHHHHC-CCCeE--EEeehHH
Q 034578 22 NNIRSMVDVGGGTGT-VLAEIVKSY-PHIKG--INFDLQH 57 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~-~~~~l~~~~-p~~~~--~~~D~p~ 57 (90)
+++.+||-||..+|. ++.++..+| |++.- +.++.|.
T Consensus 39 ngPKkVLviGaSsGyGLa~RIsaaFG~gAdTiGVffE~pg 78 (398)
T COG3007 39 NGPKKVLVIGASSGYGLAARISAAFGPGADTIGVFFERPG 78 (398)
T ss_pred CCCceEEEEecCCcccHHHHHHHHhCCCCceeeEEeecCC
Confidence 478999999999998 888888887 56654 4455443
No 473
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=58.50 E-value=19 Score=25.99 Aligned_cols=31 Identities=26% Similarity=0.336 Sum_probs=25.5
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
-.++=||+|+|.+..++..+.-+.++..+|.
T Consensus 5 ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~ 35 (472)
T PRK05976 5 YDLVIIGGGPGGYVAAIRAGQLGLKTALVEK 35 (472)
T ss_pred ccEEEECCCHHHHHHHHHHHhCCCeEEEEEc
Confidence 3588999999888877777767889999994
No 474
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=58.45 E-value=19 Score=25.98 Aligned_cols=30 Identities=23% Similarity=0.298 Sum_probs=24.8
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
.|+=||+|+|.+..++....-+.+++.+|.
T Consensus 6 DvvIIG~GpaG~~AA~~aa~~G~~V~lie~ 35 (466)
T PRK07818 6 DVVVLGAGPGGYVAAIRAAQLGLKTAVVEK 35 (466)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEec
Confidence 589999999888877777666889998883
No 475
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=58.42 E-value=14 Score=26.55 Aligned_cols=29 Identities=31% Similarity=0.367 Sum_probs=22.2
Q ss_pred EEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 27 MVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
|+-||+|++-++.++..+.-+++++.+|.
T Consensus 2 VVVvGgG~aG~~AAi~AAr~G~~VlLiE~ 30 (428)
T PF12831_consen 2 VVVVGGGPAGVAAAIAAARAGAKVLLIEK 30 (428)
T ss_dssp EEEE--SHHHHHHHHHHHHTTS-EEEE-S
T ss_pred EEEECccHHHHHHHHHHHHCCCEEEEEEC
Confidence 68899999999999888888999999995
No 476
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=58.35 E-value=16 Score=26.33 Aligned_cols=30 Identities=17% Similarity=0.307 Sum_probs=24.9
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
-|+=||+|+|.+..++..+.-+.+++.+|.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~liE~ 33 (450)
T TIGR01421 4 DYLVIGGGSGGIASARRAAEHGAKALLVEA 33 (450)
T ss_pred CEEEECcCHHHHHHHHHHHHCCCcEEEecc
Confidence 488899999988887777767889999984
No 477
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=58.19 E-value=22 Score=24.75 Aligned_cols=22 Identities=36% Similarity=0.717 Sum_probs=19.3
Q ss_pred CCCeEEEecC-------------------------CchHHHHHHHHH
Q 034578 23 NIRSMVDVGG-------------------------GTGTVLAEIVKS 44 (90)
Q Consensus 23 ~~~~vlDvG~-------------------------G~G~~~~~l~~~ 44 (90)
..++|+|||| |||.++..++++
T Consensus 125 ~v~tIIDIGGQDsK~I~~d~~G~v~dF~MNdkCAAGTGrFLE~~A~~ 171 (293)
T TIGR03192 125 AVRTILDMGGQDCKAIHCDEKGKVTNFLMNDKCAAGTGRGMEVISDL 171 (293)
T ss_pred CCCEEEEeCCCceEEEEEcCCCcEeeeeecCcccccccHHHHHHHHH
Confidence 4689999998 999999998887
No 478
>PRK12613 galactose-6-phosphate isomerase subunit LacA; Provisional
Probab=58.03 E-value=12 Score=23.26 Aligned_cols=33 Identities=3% Similarity=-0.081 Sum_probs=20.9
Q ss_pred CCchHHHHHHHHHCCCCeEEEeehHHHHHhCCC
Q 034578 32 GGTGTVLAEIVKSYPHIKGINFDLQHVIATAPT 64 (90)
Q Consensus 32 ~G~G~~~~~l~~~~p~~~~~~~D~p~~~~~a~~ 64 (90)
||||.=..-.+.++|++++...--+...+.+++
T Consensus 62 CGtGiG~siaANKv~GIRaA~~~d~~~A~~ar~ 94 (141)
T PRK12613 62 DAYGAGPFMVATKLKGMVAAEVSDERSAYMTRG 94 (141)
T ss_pred cCCCHhHhhhhhcCCCeEEEEECCHHHHHHHHH
Confidence 667765555566788888655443666666665
No 479
>PTZ00010 tubulin beta chain; Provisional
Probab=57.84 E-value=19 Score=26.33 Aligned_cols=38 Identities=18% Similarity=0.474 Sum_probs=24.6
Q ss_pred HhhcccCCCCCCCeEEEecCCchH-----HHHHHHHHCCCCeEEE
Q 034578 13 VSHYKVDGFNNIRSMVDVGGGTGT-----VLAEIVKSYPHIKGIN 52 (90)
Q Consensus 13 ~~~~~~~~~~~~~~vlDvG~G~G~-----~~~~l~~~~p~~~~~~ 52 (90)
++..+. +.+...+-.+|||||. +...|...||+.....
T Consensus 124 ~E~cd~--l~gf~i~~Sl~GGTGSGlgs~l~e~L~dey~~~~~~~ 166 (445)
T PTZ00010 124 AESCDC--LQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMT 166 (445)
T ss_pred hhhccC--ccceEEEeccCCCccccHHHHHHHHHHhhCCccceee
Confidence 344443 5566778899998874 5556777788654333
No 480
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=57.77 E-value=21 Score=26.26 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=22.5
Q ss_pred EEEecCC-chH-HHHHHHHHCCCCeEEEeeh
Q 034578 27 MVDVGGG-TGT-VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 27 vlDvG~G-~G~-~~~~l~~~~p~~~~~~~D~ 55 (90)
|+=||+| .|. ++.+|++..|+.+++.+|.
T Consensus 3 VvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk 33 (483)
T TIGR01320 3 VVLIGAGIMSATLGVLLRELEPNWSITLIER 33 (483)
T ss_pred EEEECchHHHHHHHHHHHHhCCCCeEEEEEc
Confidence 6778988 344 5666667779999999997
No 481
>PRK07102 short chain dehydrogenase; Provisional
Probab=57.71 E-value=24 Score=22.63 Aligned_cols=52 Identities=13% Similarity=0.137 Sum_probs=31.5
Q ss_pred CeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhC------CCCCCeeEEEecCCC
Q 034578 25 RSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATA------PTHEGVSHVGGDMFD 77 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a------~~~~rv~~~~~d~~~ 77 (90)
.+++-.|+ +|.++..+++++ .+.++++++. ++-.+.. +...+++++..|..+
T Consensus 2 ~~vlItGa-s~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 62 (243)
T PRK07102 2 KKILIIGA-TSDIARACARRYAAAGARLYLAARDVERLERLADDLRARGAVAVSTHELDILD 62 (243)
T ss_pred cEEEEEcC-CcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 35676664 566666655554 3567888886 4322211 113578899999876
No 482
>PLN02565 cysteine synthase
Probab=57.58 E-value=40 Score=23.45 Aligned_cols=45 Identities=18% Similarity=0.070 Sum_probs=27.8
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchH----HHHHHHHHCCCCeEEEeeh
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGT----VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~----~~~~l~~~~p~~~~~~~D~ 55 (90)
+..+..+++.++ .. . ..+=++.|+|. ++..+.+.+|..++++++.
T Consensus 159 ~t~a~Ei~~q~~---~~-~-d~vv~~vG~GG~l~Gi~~~lk~~~p~~kvi~Vep 207 (322)
T PLN02565 159 ETTGPEIWKGTG---GK-V-DAFVSGIGTGGTITGAGKYLKEQNPDIKLYGVEP 207 (322)
T ss_pred HHHHHHHHHhcC---CC-C-CEEEEcCCchHHHHHHHHHHHHhCCCCEEEEEec
Confidence 445566666665 22 2 33444555554 4556666679999999995
No 483
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=57.45 E-value=26 Score=26.00 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=26.2
Q ss_pred CCCeEEEecCCc-hH-HHHHHHHHCCCCeEEEeeh
Q 034578 23 NIRSMVDVGGGT-GT-VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 23 ~~~~vlDvG~G~-G~-~~~~l~~~~p~~~~~~~D~ 55 (90)
...++.-+|+|- |. .+..|+++.|+.+++.++-
T Consensus 10 ~~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea 44 (491)
T KOG1276|consen 10 SGMTVAVVGGGISGLCAAYYLARLGPDVTITLFEA 44 (491)
T ss_pred ecceEEEECCchhHHHHHHHHHhcCCCceEEEEec
Confidence 457899999994 43 5667888899999988885
No 484
>PRK05884 short chain dehydrogenase; Provisional
Probab=57.44 E-value=19 Score=23.11 Aligned_cols=50 Identities=16% Similarity=0.131 Sum_probs=25.1
Q ss_pred EEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC
Q 034578 27 MVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD 77 (90)
Q Consensus 27 vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~ 77 (90)
++=.|+ +|.++.++++++ .+.+++.++. ++-++...+..+++++..|+.+
T Consensus 3 vlItGa-s~giG~~ia~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~D~~~ 55 (223)
T PRK05884 3 VLVTGG-DTDLGRTIAEGFRNDGHKVTLVGARRDDLEVAAKELDVDAIVCDNTD 55 (223)
T ss_pred EEEEeC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhccCcEEecCCCC
Confidence 343444 445666666554 3567777776 4333222111234566667654
No 485
>PRK12483 threonine dehydratase; Reviewed
Probab=57.20 E-value=44 Score=25.11 Aligned_cols=47 Identities=21% Similarity=0.145 Sum_probs=28.3
Q ss_pred hhhHHHHHhhcccCCCCCCCeEEEecCCchH--HHHHHHHHCCCCeEEEeeh
Q 034578 6 KITMKAFVSHYKVDGFNNIRSMVDVGGGTGT--VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~--~~~~l~~~~p~~~~~~~D~ 55 (90)
..++..+++.+++ ....-++=+|+|.-. ++..+....|+.++++++.
T Consensus 173 gTig~EI~eQ~~~---~~D~VvvpvGgGGliaGia~~~K~~~p~vkVIGVep 221 (521)
T PRK12483 173 GTVAMEILRQHPG---PLDAIFVPVGGGGLIAGIAAYVKYVRPEIKVIGVEP 221 (521)
T ss_pred HHHHHHHHHHhCC---CCCEEEEecCccHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 4567777777762 122344444444321 4455556679999999995
No 486
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=57.02 E-value=47 Score=24.38 Aligned_cols=64 Identities=16% Similarity=0.133 Sum_probs=38.4
Q ss_pred CCCeEEEecCC-chHHHHHHHHHCCCCeEEEeeh-HHHHHhCCCCCCeeEEEecCCC-CCCcccEEEee
Q 034578 23 NIRSMVDVGGG-TGTVLAEIVKSYPHIKGINFDL-QHVIATAPTHEGVSHVGGDMFD-AIPNADAVFMK 88 (90)
Q Consensus 23 ~~~~vlDvG~G-~G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~~~rv~~~~~d~~~-~~p~~D~i~l~ 88 (90)
...+++=+|.| +|.-+..++++ -+.++++.|. +...+.+++ ..+.+..++... .+..+|+|+.+
T Consensus 11 ~~~~v~V~G~G~sG~aa~~~L~~-~G~~v~~~D~~~~~~~~l~~-~g~~~~~~~~~~~~l~~~D~VV~S 77 (488)
T PRK03369 11 PGAPVLVAGAGVTGRAVLAALTR-FGARPTVCDDDPDALRPHAE-RGVATVSTSDAVQQIADYALVVTS 77 (488)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHH-CCCEEEEEcCCHHHHHHHHh-CCCEEEcCcchHhHhhcCCEEEEC
Confidence 34678889987 56555555554 4578999997 554443333 234555443322 24457888765
No 487
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=56.83 E-value=49 Score=21.52 Aligned_cols=54 Identities=11% Similarity=-0.005 Sum_probs=31.8
Q ss_pred CCeEEEecCCc-hHHHHHHHHHC--CCCeEEEeeh-HHHHHhCCC--CCCeeEEEecCCC
Q 034578 24 IRSMVDVGGGT-GTVLAEIVKSY--PHIKGINFDL-QHVIATAPT--HEGVSHVGGDMFD 77 (90)
Q Consensus 24 ~~~vlDvG~G~-G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a~~--~~rv~~~~~d~~~ 77 (90)
.++++-.|+++ +.++.++++++ .+.+++..+. ....+..++ ..++.+++.|+.+
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~~~~~~~~~~Dl~~ 66 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLVDEEDLLVECDVAS 66 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhccCceeEEeCCCCC
Confidence 46788888764 45555555554 4677777765 322222111 2457777888865
No 488
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=56.77 E-value=52 Score=22.57 Aligned_cols=43 Identities=12% Similarity=0.238 Sum_probs=31.3
Q ss_pred CCCCCeEEEecCCc-hHHHHHHHHHCCCCeEEEeeh-HHHHHhCCC
Q 034578 21 FNNIRSMVDVGGGT-GTVLAEIVKSYPHIKGINFDL-QHVIATAPT 64 (90)
Q Consensus 21 ~~~~~~vlDvG~G~-G~~~~~l~~~~p~~~~~~~D~-p~~~~~a~~ 64 (90)
.....+|+=.|+|+ |.++..+++.. +.+++++|. ++-.+.+++
T Consensus 164 ~~~g~~VlV~G~G~vG~~a~~~a~~~-G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 164 LKKGDLVIVIGAGGVGGYMVQTAKAM-GAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHc-CCeEEEEcCCHHHHHHHHH
Confidence 44567899899865 77888888887 457888886 666665544
No 489
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=56.76 E-value=14 Score=28.08 Aligned_cols=32 Identities=22% Similarity=0.381 Sum_probs=24.9
Q ss_pred CCeEEEecCCchHHHHHHHHHC-------C-----CCeEEEeeh
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSY-------P-----HIKGINFDL 55 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~-------p-----~~~~~~~D~ 55 (90)
.-+|+|+|=|+|.......+.+ | .++++.+|.
T Consensus 58 ~~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~ 101 (662)
T PRK01747 58 RFVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEK 101 (662)
T ss_pred cEEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEEC
Confidence 4689999999999666666555 4 478889995
No 490
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=56.52 E-value=12 Score=27.67 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=15.6
Q ss_pred HHHHhhcccCCCCCCCeEEEecCCchHHH
Q 034578 10 KAFVSHYKVDGFNNIRSMVDVGGGTGTVL 38 (90)
Q Consensus 10 ~~~~~~~~~~~~~~~~~vlDvG~G~G~~~ 38 (90)
..+...++ ......++|||||+=.+.
T Consensus 122 ~gv~~~l~---~~~~~lviDIGGGStEl~ 147 (496)
T PRK11031 122 QGVAHTTG---GADQRLVVDIGGASTELV 147 (496)
T ss_pred HhhhhccC---CCCCEEEEEecCCeeeEE
Confidence 34444444 223357999999975443
No 491
>cd06449 ACCD Aminocyclopropane-1-carboxylate deaminase (ACCD): Pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of 1-aminocyclopropane-L-carboxylate (ACC), a precursor of the plant hormone ethylene, to alpha-ketobutyrate and ammonia.
Probab=56.49 E-value=41 Score=22.98 Aligned_cols=47 Identities=13% Similarity=-0.021 Sum_probs=26.5
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchHHHHHH----HHHCCCCeEEEeeh
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGTVLAEI----VKSYPHIKGINFDL 55 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~~~~~l----~~~~p~~~~~~~D~ 55 (90)
.++..|.+.+++ .......+=+.+|+|.....+ ....|..++++++.
T Consensus 159 t~~~Ei~~q~~~--~~~~~d~vv~~~GtGgt~~G~~~~~~~~~~~~~ii~V~~ 209 (307)
T cd06449 159 GFVLEIAQQEEE--LGFKFDSIVVCSVTGSTHAGLSVGLAALGRQRRVIGIDA 209 (307)
T ss_pred HHHHHHHHHHHh--cCCCCCEEEEeCCchHHHHHHHHHHHhcCCCCeEEEEEe
Confidence 455666666652 111122344555666544444 44468899999995
No 492
>PF14737 DUF4470: Domain of unknown function (DUF4470)
Probab=56.19 E-value=36 Score=19.33 Aligned_cols=41 Identities=17% Similarity=0.123 Sum_probs=28.4
Q ss_pred CCCCCeEEEecCCchH-HHHHHHHHC-----CCCeEEEeeh-HHHHHh
Q 034578 21 FNNIRSMVDVGGGTGT-VLAEIVKSY-----PHIKGINFDL-QHVIAT 61 (90)
Q Consensus 21 ~~~~~~vlDvG~G~G~-~~~~l~~~~-----p~~~~~~~D~-p~~~~~ 61 (90)
..+.-+||=+|||... +...++... +.++++..|. |.++++
T Consensus 21 ~~~~~~iLl~G~gD~Rhvl~Tl~~~~~~~~~~~l~~~l~D~~~~vlAR 68 (100)
T PF14737_consen 21 PDEDLNILLLGCGDLRHVLKTLASLPRSYDGRKLHFTLNDINPEVLAR 68 (100)
T ss_pred CCCCceEEEecCccHHHHHHHHHhcccCcccceeEEEEecCcHHHHHH
Confidence 4456789999999888 344444332 2588999998 776654
No 493
>KOG1800 consensus Ferredoxin/adrenodoxin reductase [Nucleotide transport and metabolism]
Probab=56.13 E-value=34 Score=25.17 Aligned_cols=36 Identities=17% Similarity=0.204 Sum_probs=27.0
Q ss_pred CCCCeEEEecCCchH-H-HHHHHHHCCCCeEEEeeh-HH
Q 034578 22 NNIRSMVDVGGGTGT-V-LAEIVKSYPHIKGINFDL-QH 57 (90)
Q Consensus 22 ~~~~~vlDvG~G~G~-~-~~~l~~~~p~~~~~~~D~-p~ 57 (90)
++..+|+=||+|+.. + +..|+++.|+++++.+|. |.
T Consensus 18 s~~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~Pv 56 (468)
T KOG1800|consen 18 SSTPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPV 56 (468)
T ss_pred cCCceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCc
Confidence 345599999999654 4 455666689999999996 54
No 494
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=56.06 E-value=21 Score=25.61 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=25.1
Q ss_pred eEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
-|+=||+|+|.+..++..+.-+.+++.+|.
T Consensus 4 DvvVIG~GpaG~~aA~~aa~~G~~V~lie~ 33 (446)
T TIGR01424 4 DLFVIGAGSGGVRAARLAANHGAKVAIAEE 33 (446)
T ss_pred cEEEECCCHHHHHHHHHHHhCCCcEEEEec
Confidence 378899999998888887777888999984
No 495
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=56.04 E-value=52 Score=21.19 Aligned_cols=53 Identities=11% Similarity=0.041 Sum_probs=33.4
Q ss_pred CCeEEEecCCchHHHHHHHHHC--CCCeEEEeeh-HHHHHhC----C-CCCCeeEEEecCCC
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSY--PHIKGINFDL-QHVIATA----P-THEGVSHVGGDMFD 77 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~--p~~~~~~~D~-p~~~~~a----~-~~~rv~~~~~d~~~ 77 (90)
..+++-.|+ +|.++..+++++ .+.+++.++. ++.++.. + ...++.++..|+.+
T Consensus 11 ~k~ilItGa-s~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 71 (256)
T PRK06124 11 GQVALVTGS-ARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAGGAAEALAFDIAD 71 (256)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcCCceEEEEccCCC
Confidence 456776664 666666666654 4678899887 4433221 1 13568888888876
No 496
>PRK10458 DNA cytosine methylase; Provisional
Probab=55.99 E-value=34 Score=25.31 Aligned_cols=35 Identities=14% Similarity=0.135 Sum_probs=27.0
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCe-EEEeeh-HHHHHh
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIK-GINFDL-QHVIAT 61 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~-~~~~D~-p~~~~~ 61 (90)
-+++|+=||.|.+...+.... .+ +..+|+ +.+.+.
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG--~~~v~a~Eid~~A~~T 125 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIG--GQCVFTSEWNKHAVRT 125 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcC--CEEEEEEechHHHHHH
Confidence 489999999999999998763 33 466888 666553
No 497
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=55.96 E-value=23 Score=24.82 Aligned_cols=31 Identities=13% Similarity=0.247 Sum_probs=26.1
Q ss_pred CeEEEecCCchHHHHHHHHHCCCCeEEEeeh
Q 034578 25 RSMVDVGGGTGTVLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 25 ~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~ 55 (90)
..|+=||+|.+.++.++.-+..+.+++++|.
T Consensus 3 ~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~ 33 (392)
T PRK08243 3 TQVAIIGAGPAGLLLGQLLHLAGIDSVVLER 33 (392)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCCEEEEEc
Confidence 4689999999888888777767889999996
No 498
>PRK03910 D-cysteine desulfhydrase; Validated
Probab=55.63 E-value=34 Score=23.66 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=28.1
Q ss_pred hhHHHHHhhcccCCCCCCCeEEEecCCchH--HHHHHHHHCCCCeEEEeeh
Q 034578 7 ITMKAFVSHYKVDGFNNIRSMVDVGGGTGT--VLAEIVKSYPHIKGINFDL 55 (90)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~vlDvG~G~G~--~~~~l~~~~p~~~~~~~D~ 55 (90)
.++..+++.+++.......-|+-+|+|+-. ++..+....|+.++++++.
T Consensus 168 ~~~~Ei~~q~~~~~~~~d~vv~~vGtGgt~~Gi~~~~k~~~~~~~vigVe~ 218 (331)
T PRK03910 168 ACALEIAQQLAEGGVDFDAVVVASGSGGTHAGLAAGLAALGPDIPVIGVTV 218 (331)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEeCCcHHHHHHHHHHHHHhCCCCeEEEEEe
Confidence 356667776662001223345555555443 3455555678999999995
No 499
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=55.59 E-value=27 Score=24.87 Aligned_cols=30 Identities=10% Similarity=0.201 Sum_probs=23.0
Q ss_pred eEEEecCCchHHHHH--HHHHCCCCeEEEeeh
Q 034578 26 SMVDVGGGTGTVLAE--IVKSYPHIKGINFDL 55 (90)
Q Consensus 26 ~vlDvG~G~G~~~~~--l~~~~p~~~~~~~D~ 55 (90)
+|+=||+|.+.+..+ +++..+..+++.+|.
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~ 33 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEK 33 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEEC
Confidence 689999999875544 455567788999995
No 500
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=55.51 E-value=60 Score=22.59 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=35.8
Q ss_pred CCeEEEecCCchHHHHHHHHHCCC-CeEEEeeh-HHH-----HHhCCC----CCCeeEEE-ecCCCCCCcccEEEe
Q 034578 24 IRSMVDVGGGTGTVLAEIVKSYPH-IKGINFDL-QHV-----IATAPT----HEGVSHVG-GDMFDAIPNADAVFM 87 (90)
Q Consensus 24 ~~~vlDvG~G~G~~~~~l~~~~p~-~~~~~~D~-p~~-----~~~a~~----~~rv~~~~-~d~~~~~p~~D~i~l 87 (90)
..+|.=||+|+=..+.+..-..++ ..++.+|+ ++. ++.... ....++.. +|+ +.+.++|+|+.
T Consensus 6 ~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~~~~~~ld~~~~~~~~~~~~~I~~~~d~-~~l~~aDiVI~ 80 (321)
T PTZ00082 6 RRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNIPQGKALDISHSNVIAGSNSKVIGTNNY-EDIAGSDVVIV 80 (321)
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCchhhHHHHHHHhhhhccCCCeEEEECCCH-HHhCCCCEEEE
Confidence 357999998873223333333344 47999998 653 222111 12334443 565 45677999987
Done!