BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034583
MDTQKAQQEKEPAPAAAMTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQK
MFAGMSKISERNVDAKGVESALPLQTTVSD

High Scoring Gene Products

Symbol, full name Information P value
AT4G39235 protein from Arabidopsis thaliana 2.3e-23
AT3G05570 protein from Arabidopsis thaliana 4.4e-20
AT2G21640 protein from Arabidopsis thaliana 6.0e-16

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034583
        (90 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:505006569 - symbol:AT4G39235 "AT4G39235" speci...   269  2.3e-23   1
TAIR|locus:2078097 - symbol:AT3G05570 "AT3G05570" species...   238  4.4e-20   1
TAIR|locus:2049384 - symbol:AT2G21640 "AT2G21640" species...   199  6.0e-16   1


>TAIR|locus:505006569 [details] [associations]
            symbol:AT4G39235 "AT4G39235" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002687 GenomeReviews:CT486007_GR
            UniGene:At.3308 UniGene:At.71249 EMBL:BT024756 IPI:IPI00544322
            RefSeq:NP_568055.1 EnsemblPlants:AT4G39235.1 GeneID:830079
            KEGG:ath:AT4G39235 TAIR:At4g39235 eggNOG:NOG294775
            HOGENOM:HOG000029074 InParanoid:Q29Q00 OMA:DDFIHAS PhylomeDB:Q29Q00
            ProtClustDB:CLSN2683608 Genevestigator:Q29Q00 Uniprot:Q29Q00
        Length = 86

 Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
 Identities = 52/75 (69%), Positives = 66/75 (88%)

Query:    18 MTSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSK-ISERN-VDA 75
             MTSCRKK  DDA+F ED++DHID+FIHASMD HK+CF+KT++KMF G+SK ++E+  V+A
Sbjct:    13 MTSCRKKVKDDATFFEDVKDHIDDFIHASMDEHKSCFQKTIKKMF-GLSKAVAEKQAVEA 71

Query:    76 KGVESALPLQTTVSD 90
             KGVES LPLQTTVS+
Sbjct:    72 KGVESQLPLQTTVSE 86


>TAIR|locus:2078097 [details] [associations]
            symbol:AT3G05570 "AT3G05570" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] EMBL:CP002686
            GenomeReviews:BA000014_GR EMBL:AC011620 eggNOG:NOG294775
            HOGENOM:HOG000029074 ProtClustDB:CLSN2683608 EMBL:BT010788
            EMBL:BT011277 IPI:IPI00542224 RefSeq:NP_187208.1 UniGene:At.40651
            PRIDE:Q9M9W2 DNASU:819723 EnsemblPlants:AT3G05570.1 GeneID:819723
            KEGG:ath:AT3G05570 TAIR:At3g05570 InParanoid:Q9M9W2 OMA:HIDDFIN
            PhylomeDB:Q9M9W2 Genevestigator:Q9M9W2 Uniprot:Q9M9W2
        Length = 90

 Score = 238 (88.8 bits), Expect = 4.4e-20, P = 4.4e-20
 Identities = 49/75 (65%), Positives = 61/75 (81%)

Query:    19 TSCRKKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSKI--SERNVDAK 76
             +SCRKK  DDA+FLED++DHID+FI+ASMD HK CF KT++KMF G+SK    ++  +AK
Sbjct:    17 SSCRKKTKDDANFLEDVKDHIDDFINASMDDHKNCFNKTIKKMF-GLSKAVADKQQSEAK 75

Query:    77 G-VESALPLQTTVSD 90
             G VES LPLQTTVSD
Sbjct:    76 GGVESYLPLQTTVSD 90


>TAIR|locus:2049384 [details] [associations]
            symbol:AT2G21640 "AT2G21640" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005634
            "nucleus" evidence=ISM] [GO:0005739 "mitochondrion" evidence=IDA]
            [GO:0006979 "response to oxidative stress" evidence=IDA]
            GO:GO:0005739 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006979
            EMBL:AC007119 HOGENOM:HOG000029074 ProtClustDB:CLSN2683608
            EMBL:BT005648 EMBL:AK118931 IPI:IPI00545129 PIR:F84603
            RefSeq:NP_179758.1 UniGene:At.39547 STRING:Q9SIJ6 PaxDb:Q9SIJ6
            PRIDE:Q9SIJ6 DNASU:816702 EnsemblPlants:AT2G21640.1 GeneID:816702
            KEGG:ath:AT2G21640 TAIR:At2g21640 eggNOG:NOG255037
            InParanoid:Q9SIJ6 OMA:KIETENP PhylomeDB:Q9SIJ6 ArrayExpress:Q9SIJ6
            Genevestigator:Q9SIJ6 Uniprot:Q9SIJ6
        Length = 104

 Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
 Identities = 40/76 (52%), Positives = 56/76 (73%)

Query:    19 TSCRKK-KNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSK---ISERNVD 74
             +SCRK+ K+D+A+F  +L+DH+DEFIHASMD HK CFK T+ K+F   SK   ++E+ ++
Sbjct:    28 SSCRKRVKDDNATFFANLKDHMDEFIHASMDEHKTCFKNTMDKIFGSFSKAEAVAEKQIE 87

Query:    75 AKGV-ESALPLQTTVS 89
             AK V E   PLQT V+
Sbjct:    88 AKEVVEIHSPLQTAVT 103


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.127   0.355    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       90        76   0.00091  102 3  11 22  0.36    29
                                                     29  0.48    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  461 (49 KB)
  Total size of DFA:  84 KB (2066 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.81u 0.16s 8.97t   Elapsed:  00:00:00
  Total cpu time:  8.81u 0.16s 8.97t   Elapsed:  00:00:00
  Start:  Thu May  9 20:22:21 2013   End:  Thu May  9 20:22:21 2013

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