BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034583
         (90 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NOX|A Chain A, Nadh Oxidase From Thermus Thermophilus
          Length = 205

 Score = 30.0 bits (66), Expect = 0.35,   Method: Compositional matrix adjust.
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)

Query: 32  LEDLRDHIDEFIHASMDA-HKACFKKTVQKMFAGMSK 67
           LED   H+DE IH  +    +   K+ +Q+ FA M +
Sbjct: 89  LEDALAHLDEVIHPGVQGERREAQKQAIQRAFAAMGQ 125


>pdb|3M65|A Chain A, Crystal Structure Of Bacillus Subtilis Lon N-Terminal
           Domain
 pdb|3M65|B Chain B, Crystal Structure Of Bacillus Subtilis Lon N-Terminal
           Domain
          Length = 209

 Score = 27.3 bits (59), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)

Query: 24  KKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSKISERNVDAKGVESALP 83
           K  +D + +  L DH D++I  S        KK   + +A ++ I E    A  V S LP
Sbjct: 121 KDTEDEALMRTLLDHFDQYIKIS--------KKISAETYAAVTDIEEPGRMADIVASHLP 172

Query: 84  LQ 85
           L+
Sbjct: 173 LK 174


>pdb|1OR4|A Chain A, Crystal Structure Of Hemat Sensor Domain From B.Subtilis
           In The Cyano-Liganded Form
 pdb|1OR4|B Chain B, Crystal Structure Of Hemat Sensor Domain From B.Subtilis
           In The Cyano-Liganded Form
 pdb|1OR6|A Chain A, Crystal Structure Of Hemat Sensor Domain From B.Subtilis
           In The Unliganded Form
 pdb|1OR6|B Chain B, Crystal Structure Of Hemat Sensor Domain From B.Subtilis
           In The Unliganded Form
          Length = 178

 Score = 27.3 bits (59), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 44  HASMDAHKACFKKTVQKMFAGM 65
           H+S+D  K   K+ +Q+MFAG+
Sbjct: 86  HSSVDRLKQTLKRHIQEMFAGV 107


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.127    0.355 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,836,828
Number of Sequences: 62578
Number of extensions: 52364
Number of successful extensions: 216
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 213
Number of HSP's gapped (non-prelim): 5
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)