BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034583
         (90 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|B6YSU8|NIKR_THEON Putative nickel-responsive regulator OS=Thermococcus onnurineus
           (strain NA1) GN=TON_0150 PE=3 SV=1
          Length = 138

 Score = 32.7 bits (73), Expect = 0.74,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 5/61 (8%)

Query: 31  FLEDLRDHIDEFI---HASMDAHKACFKKTVQKMFAG-MSKISERNVDAKGVESALPLQT 86
            LE   D++DE +   H  MD H  C +  V K  AG + +I+ER +  KGV+    + T
Sbjct: 73  LLELQHDYVDEIVSSLHVHMDEHN-CLEVVVVKGKAGRIKEIAERLISLKGVKHGKLVMT 131

Query: 87  T 87
           T
Sbjct: 132 T 132


>sp|A9JR23|L_TAMVU RNA-directed RNA polymerase L OS=Tamiami virus (isolate Rat/United
           States/W 10777/1964) GN=L PE=3 SV=1
          Length = 2221

 Score = 29.6 bits (65), Expect = 5.1,   Method: Composition-based stats.
 Identities = 18/63 (28%), Positives = 31/63 (49%)

Query: 23  KKKNDDASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSKISERNVDAKGVESAL 82
           K   +D+  LED+ D +DE  H  ++  +A     + KM +G +K ++ +   K  E   
Sbjct: 884 KDDPNDSGILEDIEDLVDEGTHKLINEIEANVSDCLSKMSSGCNKSNQSSKGLKKFEKVD 943

Query: 83  PLQ 85
            LQ
Sbjct: 944 LLQ 946


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.313    0.123    0.340 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,477,046
Number of Sequences: 539616
Number of extensions: 973396
Number of successful extensions: 2203
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2200
Number of HSP's gapped (non-prelim): 7
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)