Query 034583
Match_columns 90
No_of_seqs 34 out of 36
Neff 2.4
Searched_HMMs 46136
Date Fri Mar 29 04:22:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034583.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034583hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF12443 AKNA: AT-hook-contain 47.2 12 0.00027 26.5 1.5 14 30-43 59-72 (106)
2 PF03735 ENT: ENT domain; Int 38.7 58 0.0013 21.3 3.6 26 34-59 32-57 (73)
3 PF09943 DUF2175: Uncharacteri 28.0 36 0.00077 24.0 1.3 14 49-62 26-39 (101)
4 PF00660 SRP1_TIP1: Seripauper 26.1 48 0.0011 22.9 1.7 20 29-48 17-36 (104)
5 PF08225 Antimicrobial19: Pseu 25.4 45 0.00098 18.3 1.1 13 56-68 3-15 (23)
6 PF14278 TetR_C_8: Transcripti 24.6 94 0.002 17.6 2.5 25 26-50 25-49 (77)
7 COG1473 AbgB Metal-dependent a 19.8 69 0.0015 26.3 1.7 26 28-53 10-35 (392)
8 KOG0105 Alternative splicing f 18.8 64 0.0014 26.0 1.2 10 32-41 129-138 (241)
9 PF14377 DUF4414: Domain of un 17.6 48 0.001 22.2 0.3 26 24-49 83-108 (108)
10 PF06108 DUF952: Protein of un 17.4 59 0.0013 21.5 0.6 33 31-66 16-48 (93)
No 1
>PF12443 AKNA: AT-hook-containing transcription factor; InterPro: IPR022150 This domain family is found in eukaryotes, and is approximately 110 amino acids in length. This family contains a transcription factor which regulates the expression of the costimulatory molecules on lymphocytes.
Probab=47.21 E-value=12 Score=26.48 Aligned_cols=14 Identities=36% Similarity=0.653 Sum_probs=11.4
Q ss_pred hhhhhhHHHHHHHh
Q 034583 30 SFLEDLRDHIDEFI 43 (90)
Q Consensus 30 tF~edlkDHi~EFi 43 (90)
.=++.|||||+||=
T Consensus 59 eqteeLK~kvqe~s 72 (106)
T PF12443_consen 59 EQTEELKDKVQEFS 72 (106)
T ss_pred HHHHHHHHHHHHHh
Confidence 34789999999984
No 2
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=38.71 E-value=58 Score=21.32 Aligned_cols=26 Identities=15% Similarity=0.321 Sum_probs=17.6
Q ss_pred hhHHHHHHHhhhChHHHHHHHHHHHH
Q 034583 34 DLRDHIDEFIHASMDAHKACFKKTVQ 59 (90)
Q Consensus 34 dlkDHi~EFihASmDEHktCfkkti~ 59 (90)
.|-.++....|-|-|||+.+.++-++
T Consensus 32 ~lLt~Lr~~L~IS~e~H~~~l~~~~~ 57 (73)
T PF03735_consen 32 KLLTELRKELNISDEEHREELRRAVS 57 (73)
T ss_dssp HHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHhc
Confidence 34445556679999999999988754
No 3
>PF09943 DUF2175: Uncharacterized protein conserved in archaea (DUF2175); InterPro: IPR018686 This family of various hypothetical archaeal proteins has no known function.
Probab=27.97 E-value=36 Score=24.01 Aligned_cols=14 Identities=29% Similarity=0.728 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHh
Q 034583 49 AHKACFKKTVQKMF 62 (90)
Q Consensus 49 EHktCfkkti~kmF 62 (90)
=|++||...+.+.+
T Consensus 26 VH~~C~~~~~~~k~ 39 (101)
T PF09943_consen 26 VHYECFREKASKKL 39 (101)
T ss_pred EeHHHHHHHHhhhc
Confidence 39999999988887
No 4
>PF00660 SRP1_TIP1: Seripauperin and TIP1 family; InterPro: IPR000992 It has recently been shown [] that three yeast proteins, two of which are known to be induced by various stress conditions, are structurally related and are probably part of a larger family. These proteins include cold-shock inducible protein TIR1 (also known as serine-rich protein 1, SRP1), which is induced by glucose [] and cold shock []; temperature-shock inducible protein 1 (SRP2) []; seripauperins, which are closely related protein of about 13kDa (120 to 124 residues) and are generally encoded at the extremity of yeast chromosomes (eg. PAU1, PAU2, PAU3, PAU4, PAU5, PAU6, YBR301w, YGL261c, YGR294w, YHL046c, YIL176c, YIR041w and YKL224c) []; and hypothetical proteins YIL011w, YJR150c and YJR151c. These proteins all seem to start with a putative signal sequence followed by a conserved domain of about 90 residues. In TIR1, TIR2, TIP1, YIL011w, YJR150c and YJR151c, this domain is followed by a repetitive serine and alanine rich region absent in the other members of this family.; GO: 0006950 response to stress
Probab=26.09 E-value=48 Score=22.87 Aligned_cols=20 Identities=15% Similarity=0.586 Sum_probs=15.8
Q ss_pred chhhhhhHHHHHHHhhhChH
Q 034583 29 ASFLEDLRDHIDEFIHASMD 48 (90)
Q Consensus 29 atF~edlkDHi~EFihASmD 48 (90)
.-||+|++.|+.|++.--+.
T Consensus 17 ~~~l~Dv~snl~~Y~s~~~~ 36 (104)
T PF00660_consen 17 TVLLSDVKSNLNDYMSLQMT 36 (104)
T ss_pred HHHHHHHHHHHHHHHHHHhc
Confidence 45899999999999865433
No 5
>PF08225 Antimicrobial19: Pseudin antimicrobial peptide; InterPro: IPR013156 Pseudins are a subfamily of the FSAP family (Frog Secreted Active Peptides) extracted from the skin of the paradoxical frog Pseudis paradoxa (Paradoxical frog). The pseudins belong to the class of cationic, amphipathic-helical antimicrobial peptides [].; GO: 0006952 defense response
Probab=25.40 E-value=45 Score=18.30 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=9.8
Q ss_pred HHHHHHhhhhhhh
Q 034583 56 KTVQKMFAGMSKI 68 (90)
Q Consensus 56 kti~kmF~gmSK~ 68 (90)
||++|.|.|+-.+
T Consensus 3 ntlkkv~qglhe~ 15 (23)
T PF08225_consen 3 NTLKKVFQGLHEV 15 (23)
T ss_pred hHHHHHHHHHHHH
Confidence 7889999887543
No 6
>PF14278 TetR_C_8: Transcriptional regulator C-terminal region
Probab=24.59 E-value=94 Score=17.55 Aligned_cols=25 Identities=32% Similarity=0.606 Sum_probs=17.5
Q ss_pred CCCchhhhhhHHHHHHHhhhChHHH
Q 034583 26 NDDASFLEDLRDHIDEFIHASMDAH 50 (90)
Q Consensus 26 ~d~atF~edlkDHi~EFihASmDEH 50 (90)
+.+..|.+.|++.+.+.+....+++
T Consensus 25 ~~~~~f~~~l~~~~~~~~~~~~~~~ 49 (77)
T PF14278_consen 25 NGDPNFQERLKELIKEWITEYINEN 49 (77)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 3477888888888877766555443
No 7
>COG1473 AbgB Metal-dependent amidase/aminoacylase/carboxypeptidase [General function prediction only]
Probab=19.81 E-value=69 Score=26.34 Aligned_cols=26 Identities=12% Similarity=0.129 Sum_probs=23.2
Q ss_pred CchhhhhhHHHHHHHhhhChHHHHHH
Q 034583 28 DASFLEDLRDHIDEFIHASMDAHKAC 53 (90)
Q Consensus 28 ~atF~edlkDHi~EFihASmDEHktC 53 (90)
....+.++|.|||+|=+-|..|.+|+
T Consensus 10 ~~~~l~~~rr~lH~~PEL~f~E~~Ta 35 (392)
T COG1473 10 LKDELIEWRRDLHEHPELGFEEYRTA 35 (392)
T ss_pred hhHHHHHHHHHHhhCCccchhHHHHH
Confidence 34568899999999999999999997
No 8
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=18.81 E-value=64 Score=26.00 Aligned_cols=10 Identities=50% Similarity=0.963 Sum_probs=8.7
Q ss_pred hhhhHHHHHH
Q 034583 32 LEDLRDHIDE 41 (90)
Q Consensus 32 ~edlkDHi~E 41 (90)
..|||||++|
T Consensus 129 WQDLKDHmRe 138 (241)
T KOG0105|consen 129 WQDLKDHMRE 138 (241)
T ss_pred hHHHHHHHHh
Confidence 5799999987
No 9
>PF14377 DUF4414: Domain of unknown function (DUF4414)
Probab=17.59 E-value=48 Score=22.15 Aligned_cols=26 Identities=31% Similarity=0.437 Sum_probs=22.1
Q ss_pred ccCCCchhhhhhHHHHHHHhhhChHH
Q 034583 24 KKNDDASFLEDLRDHIDEFIHASMDA 49 (90)
Q Consensus 24 k~~d~atF~edlkDHi~EFihASmDE 49 (90)
.-.|+++|+..|=-++++=|-++|||
T Consensus 83 ~~~d~asflatl~p~LR~evL~~~~~ 108 (108)
T PF14377_consen 83 QEMDNASFLATLPPELRREVLLDMDD 108 (108)
T ss_pred CCCCHHHHHHhCCHHHHHHHhhccCC
Confidence 34568999999999999999888875
No 10
>PF06108 DUF952: Protein of unknown function (DUF952); InterPro: IPR009297 This family consists of several hypothetical bacterial and plant proteins of unknown function.; PDB: 2O0Q_A 2O0P_A 2JQN_A.
Probab=17.42 E-value=59 Score=21.54 Aligned_cols=33 Identities=30% Similarity=0.447 Sum_probs=21.3
Q ss_pred hhhhhHHHHHHHhhhChHHHHHHHHHHHHHHhhhhh
Q 034583 31 FLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMS 66 (90)
Q Consensus 31 F~edlkDHi~EFihASmDEHktCfkkti~kmF~gmS 66 (90)
+.-.-.|+=+-|||.|..+- +..|.++.|+|-.
T Consensus 16 y~~~~ld~~dGFIH~St~~Q---v~~ta~~ff~~~~ 48 (93)
T PF06108_consen 16 YPGSSLDTSDGFIHLSTAEQ---VPGTANRFFAGQE 48 (93)
T ss_dssp E---HHHHHHTSEE-EEHHH---HHHHHHHHSTT--
T ss_pred CCCCccccCCCEEEcCCHHH---HHHHHHHHcCCCC
Confidence 33344555688999998766 6799999997743
Done!