Query 034583
Match_columns 90
No_of_seqs 34 out of 36
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 06:41:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034583.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034583hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a1g_E Protein CASC5; cell cyc 33.3 11 0.00038 23.3 0.4 17 23-39 27-43 (53)
2 1uz3_A EMSY protein; chromatin 28.2 55 0.0019 22.1 3.3 27 33-59 48-74 (102)
3 2elu_A Zinc finger protein 406 26.9 36 0.0012 19.6 1.9 23 15-41 9-31 (37)
4 3go5_A Multidomain protein wit 16.7 40 0.0014 25.2 0.7 14 57-71 250-263 (285)
5 2rbd_A BH2358 protein; putativ 16.3 1.6E+02 0.0053 19.5 3.6 27 33-59 128-154 (171)
6 2xqo_A Cellulosome enzyme, doc 16.1 1.3E+02 0.0046 23.0 3.6 9 81-89 113-121 (243)
7 2raw_B Borealin; cell cycle, d 14.7 2.4E+02 0.0081 17.7 3.9 33 29-62 4-36 (68)
8 1pi1_A MOB1A; mitotic EXIT net 13.8 1E+02 0.0035 21.9 2.3 26 37-62 134-162 (185)
9 2p09_A A non-biological ATP bi 13.5 81 0.0028 20.6 1.5 10 50-59 48-57 (81)
10 2qfa_B Borealin; three-helical 13.2 2.5E+02 0.0086 17.2 3.6 34 28-62 7-40 (62)
No 1
>4a1g_E Protein CASC5; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens}
Probab=33.26 E-value=11 Score=23.33 Aligned_cols=17 Identities=41% Similarity=0.577 Sum_probs=13.8
Q ss_pred cccCCCchhhhhhHHHH
Q 034583 23 KKKNDDASFLEDLRDHI 39 (90)
Q Consensus 23 kk~~d~atF~edlkDHi 39 (90)
..|-|-++||.+||.|-
T Consensus 27 s~KIDttSFLanLk~h~ 43 (53)
T 4a1g_E 27 STKIDTTSFLANLKLHT 43 (53)
T ss_pred ceeccHHHHHHHHHhhc
Confidence 34567899999999985
No 2
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=28.24 E-value=55 Score=22.10 Aligned_cols=27 Identities=22% Similarity=0.453 Sum_probs=20.5
Q ss_pred hhhHHHHHHHhhhChHHHHHHHHHHHH
Q 034583 33 EDLRDHIDEFIHASMDAHKACFKKTVQ 59 (90)
Q Consensus 33 edlkDHi~EFihASmDEHktCfkkti~ 59 (90)
+.|-.+++...|-|-|||+..+++-+.
T Consensus 48 e~LLt~LR~~L~IS~eeH~~elrr~~s 74 (102)
T 1uz3_A 48 KDLLGELSKVLSISTERHRAEVRRAVN 74 (102)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHhcc
Confidence 345555667789999999999887654
No 3
>2elu_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2elw_A
Probab=26.92 E-value=36 Score=19.61 Aligned_cols=23 Identities=30% Similarity=0.559 Sum_probs=16.2
Q ss_pred cchhhhhhcccCCCchhhhhhHHHHHH
Q 034583 15 AAAMTSCRKKKNDDASFLEDLRDHIDE 41 (90)
Q Consensus 15 ~~~~tsCRkk~~d~atF~edlkDHi~E 41 (90)
++---+|.||-+| |.+|-.||+|
T Consensus 9 kqhcrfckkkysd----vknlikhire 31 (37)
T 2elu_A 9 KQHCRFCKKKYSD----VKNLIKHIRD 31 (37)
T ss_dssp CCEETTTTEECSS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHH
Confidence 4445678887765 6778888876
No 4
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=16.68 E-value=40 Score=25.16 Aligned_cols=14 Identities=29% Similarity=0.467 Sum_probs=11.2
Q ss_pred HHHHHhhhhhhhhhh
Q 034583 57 TVQKMFAGMSKISER 71 (90)
Q Consensus 57 ti~kmF~gmSK~aer 71 (90)
.|++.| ||||.|=+
T Consensus 250 ~I~~~f-~~SK~~FK 263 (285)
T 3go5_A 250 DIKATF-GISKGQFK 263 (285)
T ss_dssp HHHHHH-SSCHHHHH
T ss_pred HHHHHh-CcCHHHHH
Confidence 599999 99998433
No 5
>2rbd_A BH2358 protein; putative spore coat protein, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.54A {Bacillus halodurans c-125}
Probab=16.32 E-value=1.6e+02 Score=19.49 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=15.3
Q ss_pred hhhHHHHHHHhhhChHHHHHHHHHHHH
Q 034583 33 EDLRDHIDEFIHASMDAHKACFKKTVQ 59 (90)
Q Consensus 33 edlkDHi~EFihASmDEHktCfkkti~ 59 (90)
+|||+.+.+|+...++-|..+++=-.+
T Consensus 128 ~Dir~~f~~~~~~~~~~~~~i~~~m~~ 154 (171)
T 2rbd_A 128 EDVALMFSQFHMAKVQFGGKMLKLNKN 154 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666666666655555544333
No 6
>2xqo_A Cellulosome enzyme, dockerin type I; hydrolase; HET: MSE CTR; 1.40A {Clostridium thermocellum}
Probab=16.14 E-value=1.3e+02 Score=23.05 Aligned_cols=9 Identities=44% Similarity=0.383 Sum_probs=7.0
Q ss_pred ccccccccc
Q 034583 81 ALPLQTTVS 89 (90)
Q Consensus 81 ~lpLqttv~ 89 (90)
+=||||.++
T Consensus 113 yGplQTAeT 121 (243)
T 2xqo_A 113 FGPLQTAET 121 (243)
T ss_dssp ETTTTEEGG
T ss_pred ccchHHHHH
Confidence 469999875
No 7
>2raw_B Borealin; cell cycle, dasrab, chromosomal passender complex, IAP, BIR, apoptosis, cell division, centromere, chromosomal protein, binding, mitosis; 2.40A {Homo sapiens} PDB: 2rax_B
Probab=14.70 E-value=2.4e+02 Score=17.68 Aligned_cols=33 Identities=24% Similarity=0.429 Sum_probs=25.6
Q ss_pred chhhhhhHHHHHHHhhhChHHHHHHHHHHHHHHh
Q 034583 29 ASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMF 62 (90)
Q Consensus 29 atF~edlkDHi~EFihASmDEHktCfkkti~kmF 62 (90)
|+|+.|.-.++.+=++-.-.+=.+|++ .|...|
T Consensus 4 asFLkDFD~eV~~~~~~lr~~~~~llk-~i~~~y 36 (68)
T 2raw_B 4 ASFLKDFDREVEIRIKQIESDRQNLLK-EVDNLY 36 (68)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 789999999998877766555566665 888887
No 8
>1pi1_A MOB1A; mitotic EXIT network, mitosis, DBF2, cell cycle; 2.00A {Homo sapiens} SCOP: a.29.7.1 PDB: 1r3b_A
Probab=13.83 E-value=1e+02 Score=21.94 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=20.0
Q ss_pred HHHHHHhhhChHHHH-HHHHHH--HHHHh
Q 034583 37 DHIDEFIHASMDAHK-ACFKKT--VQKMF 62 (90)
Q Consensus 37 DHi~EFihASmDEHk-tCfkkt--i~kmF 62 (90)
.|++.|.+...+.|. +||+.- .-+.|
T Consensus 134 ~Hf~~~~~l~~e~hlNt~f~hF~~F~~ef 162 (185)
T 1pi1_A 134 QHFDSVMQLQEEAHLNTSFKHFIFFVQEF 162 (185)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcceehhhHHHHHHHHHHh
Confidence 489999999999998 678763 33445
No 9
>2p09_A A non-biological ATP binding protein with two MUT N32D and D65V; alpha/beta fold, de novo protein; HET: ATP 1PE; 1.65A {Unidentified} PDB: 3dgl_A* 3dgm_A* 3dgn_A* 3ltb_A* 3ltc_A* 3ltd_A* 3dgo_A* 3lta_A* 3lt8_A* 3lt9_A* 2p05_A* 1uw1_A* 2p0x_A*
Probab=13.47 E-value=81 Score=20.59 Aligned_cols=10 Identities=30% Similarity=0.936 Sum_probs=8.4
Q ss_pred HHHHHHHHHH
Q 034583 50 HKACFKKTVQ 59 (90)
Q Consensus 50 HktCfkkti~ 59 (90)
-||||.|.|.
T Consensus 48 cktcfnnsid 57 (81)
T 2p09_A 48 CKTCFNNSID 57 (81)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHhcCcee
Confidence 4899999885
No 10
>2qfa_B Borealin; three-helical-bundle, long helix, protein complex, alternative splicing, apoptosis, cell cycle, cell division; HET: MES; 1.40A {Homo sapiens}
Probab=13.19 E-value=2.5e+02 Score=17.17 Aligned_cols=34 Identities=24% Similarity=0.378 Sum_probs=25.6
Q ss_pred CchhhhhhHHHHHHHhhhChHHHHHHHHHHHHHHh
Q 034583 28 DASFLEDLRDHIDEFIHASMDAHKACFKKTVQKMF 62 (90)
Q Consensus 28 ~atF~edlkDHi~EFihASmDEHktCfkkti~kmF 62 (90)
=|+|+.|.-.++.+=++-.-.+=..|++ .|...|
T Consensus 7 LasFLkDFD~ev~~~~~~~~~~~~~llk-~i~~~y 40 (62)
T 2qfa_B 7 LASFLKDFDREVEIRIKQIESDRQNLLK-EVDNLY 40 (62)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3789999999998877766555556655 788777
Done!