Query 034583
Match_columns 90
No_of_seqs 34 out of 36
Neff 2.4
Searched_HMMs 13730
Date Mon Mar 25 06:41:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034583.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034583hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pi1a_ a.29.7.1 (A:) Mob1a {H 35.4 15 0.0011 24.9 3.2 26 37-62 134-162 (185)
2 d1n1ja_ a.22.1.3 (A:) Nuclear 16.7 34 0.0025 19.5 1.9 17 27-43 70-86 (87)
3 d2daxa1 d.20.1.3 (A:8-147) Unc 16.1 28 0.0021 20.2 1.4 17 30-46 120-136 (140)
4 d1y6da_ a.24.10.5 (A:) Phospho 13.9 1.1E+02 0.0078 16.9 3.7 37 30-67 29-65 (114)
5 d2d8ya1 g.39.1.3 (A:9-43) Epli 13.1 7 0.00051 20.6 -1.9 7 19-25 11-17 (35)
6 d1q23a_ c.43.1.1 (A:) Chloramp 12.8 28 0.002 22.7 0.7 17 28-44 197-213 (214)
7 d1sr2a_ a.24.10.4 (A:) Sensor- 11.6 1E+02 0.0073 17.7 3.0 38 30-68 39-76 (116)
8 d1b8ta3 g.39.1.3 (A:101-143) C 11.2 9.3 0.00068 20.7 -1.8 7 19-25 19-25 (43)
9 d2c0ga1 a.71.1.1 (A:1146-1251) 11.1 61 0.0045 19.7 2.0 26 32-57 5-30 (106)
10 d2co8a2 g.39.1.3 (A:8-43) Nedd 11.1 9.3 0.00067 20.3 -1.8 8 19-26 12-19 (36)
No 1
>d1pi1a_ a.29.7.1 (A:) Mob1a {Human (Homo sapiens) [TaxId: 9606]}
Probab=35.38 E-value=15 Score=24.87 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=21.8
Q ss_pred HHHHHHhhhChHHHH-HHHHH--HHHHHh
Q 034583 37 DHIDEFIHASMDAHK-ACFKK--TVQKMF 62 (90)
Q Consensus 37 DHi~EFihASmDEHk-tCfkk--ti~kmF 62 (90)
-|++.|.+.....|. |||+. ..-+.|
T Consensus 134 ~Hf~~~~~l~~e~hlNt~FkHF~~f~~ef 162 (185)
T d1pi1a_ 134 QHFDSVMQLQEEAHLNTSFKHFIFFVQEF 162 (185)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccchHHHHHHHHHHHHHHHHh
Confidence 489999999999998 88887 556666
No 2
>d1n1ja_ a.22.1.3 (A:) Nuclear transcription factor Y subunit beta (Nf-Yb3) {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.70 E-value=34 Score=19.51 Aligned_cols=17 Identities=24% Similarity=0.340 Sum_probs=14.2
Q ss_pred CCchhhhhhHHHHHHHh
Q 034583 27 DDASFLEDLRDHIDEFI 43 (90)
Q Consensus 27 d~atF~edlkDHi~EFi 43 (90)
+-..|++.|+.|+++|.
T Consensus 70 ~~~~fl~~l~~~~~~~k 86 (87)
T d1n1ja_ 70 GFDSYVEPLKLYLQKFR 86 (87)
T ss_dssp TCGGGHHHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHhc
Confidence 45689999999998885
No 3
>d2daxa1 d.20.1.3 (A:8-147) Uncharacterized protein C21orf6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=16.07 E-value=28 Score=20.16 Aligned_cols=17 Identities=18% Similarity=0.349 Sum_probs=13.3
Q ss_pred hhhhhhHHHHHHHhhhC
Q 034583 30 SFLEDLRDHIDEFIHAS 46 (90)
Q Consensus 30 tF~edlkDHi~EFihAS 46 (90)
+.++-||+|+..||+.+
T Consensus 120 ~lve~lqe~~~~~~~~~ 136 (140)
T d2daxa1 120 NATEWVREHASGYVSRD 136 (140)
T ss_dssp HHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHHHHhccC
Confidence 56788888888888753
No 4
>d1y6da_ a.24.10.5 (A:) Phosphorelay protein luxU {Vibrio harveyi [TaxId: 669]}
Probab=13.95 E-value=1.1e+02 Score=16.95 Aligned_cols=37 Identities=11% Similarity=0.145 Sum_probs=29.1
Q ss_pred hhhhhhHHHHHHHhhhChHHHHHHHHHHHHHHhhhhhh
Q 034583 30 SFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSK 67 (90)
Q Consensus 30 tF~edlkDHi~EFihASmDEHktCfkkti~kmF~gmSK 67 (90)
.|++++.+.+.+...|-...-+.=+....+++= |.+-
T Consensus 29 ~F~~~~~~~~~~L~~a~~~~d~~~l~~~aH~LK-Gsa~ 65 (114)
T d1y6da_ 29 IFLGEMDSYIGTLTELQGSEQLLYLKEISHALK-SSAA 65 (114)
T ss_dssp HHHHHHHHHHHHTTTTSSHHHHHHHHHHHHHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHH-HHHH
Confidence 588889999988888888877777777777775 5543
No 5
>d2d8ya1 g.39.1.3 (A:9-43) Eplin, LIMA1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.15 E-value=7 Score=20.63 Aligned_cols=7 Identities=29% Similarity=0.705 Sum_probs=3.9
Q ss_pred hhhhccc
Q 034583 19 TSCRKKK 25 (90)
Q Consensus 19 tsCRkk~ 25 (90)
..|.|.+
T Consensus 11 ~~C~K~V 17 (35)
T d2d8ya1 11 VECQKTV 17 (35)
T ss_dssp TTTCCBC
T ss_pred ccCCCEE
Confidence 4566654
No 6
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]}
Probab=12.77 E-value=28 Score=22.74 Aligned_cols=17 Identities=24% Similarity=0.360 Sum_probs=14.3
Q ss_pred CchhhhhhHHHHHHHhh
Q 034583 28 DASFLEDLRDHIDEFIH 44 (90)
Q Consensus 28 ~atF~edlkDHi~EFih 44 (90)
-|.|+++|++.|+||-+
T Consensus 197 ~a~Fl~~lq~~le~~~~ 213 (214)
T d1q23a_ 197 VGRMLNELQQYCDEWQG 213 (214)
T ss_dssp HHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHhhccC
Confidence 46799999999999853
No 7
>d1sr2a_ a.24.10.4 (A:) Sensor-like histidine kinase YojN, C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=11.64 E-value=1e+02 Score=17.70 Aligned_cols=38 Identities=13% Similarity=0.339 Sum_probs=29.7
Q ss_pred hhhhhhHHHHHHHhhhChHHHHHHHHHHHHHHhhhhhhh
Q 034583 30 SFLEDLRDHIDEFIHASMDAHKACFKKTVQKMFAGMSKI 68 (90)
Q Consensus 30 tF~edlkDHi~EFihASmDEHktCfkkti~kmF~gmSK~ 68 (90)
-|++++.+.+.+.-.|--..-+.=.....++|= |.+-.
T Consensus 39 lF~~~~p~~l~~L~~a~~~~D~~~l~~~aH~LK-Gs~~~ 76 (116)
T d1sr2a_ 39 LFVDTVPDDVKRLYTEAATSDFAALAQTAHRLK-GVFAM 76 (116)
T ss_dssp HHTTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH-HHHHH
T ss_pred HHHHhhHHHHHHHHHHHHCcCHHHHHHHHHHHH-HHHHH
Confidence 388889999988888888778888888888876 66443
No 8
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=11.21 E-value=9.3 Score=20.65 Aligned_cols=7 Identities=14% Similarity=0.468 Sum_probs=3.6
Q ss_pred hhhhccc
Q 034583 19 TSCRKKK 25 (90)
Q Consensus 19 tsCRkk~ 25 (90)
..|.|.+
T Consensus 19 ~~C~k~V 25 (43)
T d1b8ta3 19 PRCGQAV 25 (43)
T ss_dssp TTTSCEE
T ss_pred ccCCCEe
Confidence 4455544
No 9
>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=11.13 E-value=61 Score=19.73 Aligned_cols=26 Identities=4% Similarity=0.220 Sum_probs=20.4
Q ss_pred hhhhHHHHHHHhhhChHHHHHHHHHH
Q 034583 32 LEDLRDHIDEFIHASMDAHKACFKKT 57 (90)
Q Consensus 32 ~edlkDHi~EFihASmDEHktCfkkt 57 (90)
++.+-+=..||+.++-||.+.++.+.
T Consensus 5 i~~~D~La~eF~~a~~~er~~ll~k~ 30 (106)
T d2c0ga1 5 IKEFNEVLKNYANIPDAEQLKLIEKL 30 (106)
T ss_dssp CHHHHHHHTTGGGSCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45566667899999999998887763
No 10
>d2co8a2 g.39.1.3 (A:8-43) Nedd9 interacting protein with calponin homology, NICAL (MICAL1) {Human (Homo sapiens) [TaxId: 9606]}
Probab=11.10 E-value=9.3 Score=20.34 Aligned_cols=8 Identities=13% Similarity=0.306 Sum_probs=4.5
Q ss_pred hhhhcccC
Q 034583 19 TSCRKKKN 26 (90)
Q Consensus 19 tsCRkk~~ 26 (90)
..|.|.+-
T Consensus 12 ~~C~K~VY 19 (36)
T d2co8a2 12 ALCGEHLY 19 (36)
T ss_dssp SSSCCBCC
T ss_pred cccCCEEe
Confidence 45666553
Done!