Query 034584
Match_columns 90
No_of_seqs 104 out of 398
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 04:22:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034584.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034584hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00316 profilin; Provisional 100.0 3.1E-36 6.8E-41 202.9 10.3 86 1-90 1-90 (150)
2 smart00392 PROF Profilin. Bind 100.0 2E-33 4.4E-38 185.0 10.0 86 1-90 1-88 (129)
3 cd00148 PROF Profilin binds ac 100.0 6.1E-33 1.3E-37 182.6 10.3 84 2-90 1-86 (127)
4 KOG1755 Profilin [Cytoskeleton 100.0 2.5E-30 5.4E-35 170.0 8.6 85 1-89 1-86 (128)
5 PF00235 Profilin: Profilin; 100.0 5.7E-30 1.2E-34 165.8 6.5 84 2-89 1-84 (121)
6 PF03259 Robl_LC7: Roadblock/L 79.3 0.57 1.2E-05 27.6 -0.1 23 10-35 8-30 (91)
7 PF05176 ATP-synt_10: ATP10 pr 68.1 6.1 0.00013 28.8 2.9 34 19-55 216-250 (252)
8 PF14584 DUF4446: Protein of u 64.3 14 0.00029 25.0 3.8 30 23-53 115-150 (151)
9 PF02770 Acyl-CoA_dh_M: Acyl-C 63.2 9.2 0.0002 20.7 2.4 26 62-87 24-51 (52)
10 PF10144 SMP_2: Bacterial viru 62.2 11 0.00025 26.8 3.3 29 6-38 77-105 (210)
11 PRK00468 hypothetical protein; 57.1 22 0.00047 21.3 3.5 43 47-89 5-50 (75)
12 PRK02821 hypothetical protein; 51.2 24 0.00052 21.3 3.0 43 47-89 6-51 (77)
13 COG2018 Uncharacterized distan 49.1 42 0.0009 22.0 4.1 35 17-52 16-50 (119)
14 PF01509 TruB_N: TruB family p 47.8 33 0.00071 23.0 3.6 43 29-72 60-105 (149)
15 PF07485 DUF1529: Domain of Un 43.8 16 0.00034 24.0 1.5 39 38-84 62-100 (123)
16 PF07494 Reg_prop: Two compone 42.9 36 0.00078 15.5 2.5 16 22-37 8-23 (24)
17 PF00166 Cpn10: Chaperonin 10 40.7 40 0.00087 20.5 2.9 17 62-78 71-87 (93)
18 cd00320 cpn10 Chaperonin 10 Kd 39.6 32 0.0007 21.1 2.4 17 62-78 71-87 (93)
19 PF04312 DUF460: Protein of un 39.5 1E+02 0.0022 20.8 4.8 19 16-34 38-56 (138)
20 PF08356 EF_assoc_2: EF hand a 39.2 29 0.00062 21.5 2.1 30 41-70 3-34 (89)
21 COG1837 Predicted RNA-binding 38.5 72 0.0016 19.2 3.7 43 47-89 5-50 (76)
22 PRK11246 hypothetical protein; 38.5 47 0.001 24.0 3.3 27 10-39 80-106 (218)
23 COG4831 Roadblock/LC7 domain [ 36.8 1.1E+02 0.0025 19.5 5.2 64 7-78 5-86 (109)
24 PRK00364 groES co-chaperonin G 35.8 43 0.00094 20.7 2.5 17 62-78 72-88 (95)
25 PRK14533 groES co-chaperonin G 35.1 48 0.001 20.5 2.6 17 62-78 67-83 (91)
26 PRK01064 hypothetical protein; 34.6 98 0.0021 18.6 3.9 43 47-89 5-50 (78)
27 PTZ00414 10 kDa heat shock pro 33.7 36 0.00079 21.5 1.9 17 62-78 76-92 (100)
28 COG3726 AhpA Uncharacterized m 33.7 21 0.00045 25.6 0.9 31 5-39 76-106 (214)
29 PF13856 Gifsy-2: ATP-binding 32.4 56 0.0012 19.8 2.6 21 59-79 66-86 (95)
30 PF05952 ComX: Bacillus compet 31.8 56 0.0012 18.7 2.3 18 41-58 28-45 (57)
31 PHA02102 hypothetical protein 31.5 53 0.0012 19.4 2.2 18 19-36 53-70 (72)
32 PF09695 YtfJ_HI0045: Bacteria 30.9 1.1E+02 0.0023 21.1 4.0 31 22-55 127-158 (160)
33 PF09176 Mpt_N: Methylene-tetr 30.8 14 0.00031 22.7 -0.3 31 41-71 20-53 (81)
34 KOG2500 Uncharacterized conser 30.6 80 0.0017 23.2 3.5 33 50-82 68-100 (253)
35 COG1526 FdhD Uncharacterized p 28.9 51 0.0011 24.4 2.3 23 17-39 156-178 (266)
36 PF00649 Copper-fist: Copper f 26.5 72 0.0016 17.0 2.0 12 65-76 2-13 (40)
37 PHA02591 hypothetical protein; 26.4 23 0.0005 21.8 0.1 19 62-80 30-48 (83)
38 PF02911 Formyl_trans_C: Formy 26.2 1.5E+02 0.0032 17.5 4.7 37 38-78 10-46 (100)
39 PRK06988 putative formyltransf 26.1 1.7E+02 0.0036 21.7 4.6 38 38-78 211-248 (312)
40 PF02866 Ldh_1_C: lactate/mala 25.6 1.3E+02 0.0029 19.9 3.8 33 20-54 128-160 (174)
41 COG4667 Predicted esterase of 25.5 2.7E+02 0.0058 21.0 5.5 28 44-73 140-167 (292)
42 PF13822 ACC_epsilon: Acyl-CoA 25.3 63 0.0014 18.4 1.8 15 41-55 10-24 (62)
43 PF05228 CHASE4: CHASE4 domain 25.2 1.9E+02 0.004 18.3 7.7 71 5-75 34-116 (161)
44 PRK06714 S-adenosylhomocystein 24.6 2.6E+02 0.0056 19.8 5.3 42 42-88 9-50 (236)
45 PF14199 DUF4317: Domain of un 24.5 78 0.0017 24.6 2.7 18 64-82 348-365 (371)
46 PRK04210 phosphoenolpyruvate c 24.2 26 0.00055 28.9 0.0 34 39-73 384-417 (601)
47 PF05123 S_layer_N: S-layer li 23.8 91 0.002 23.5 2.8 25 62-86 241-267 (290)
48 cd00506 PseudoU_synth_TruB_lik 23.6 1.6E+02 0.0035 20.9 4.0 44 28-72 79-125 (210)
49 COG2152 Predicted glycosylase 23.6 1.6E+02 0.0034 22.5 4.0 53 21-76 234-288 (314)
50 cd09232 Snurportin-1_C C-termi 23.0 98 0.0021 21.5 2.7 24 66-89 28-51 (186)
51 cd03530 Rieske_NirD_small_Baci 22.7 1.6E+02 0.0035 17.4 3.4 24 62-86 15-38 (98)
52 KOG4614 Inner membrane protein 22.4 1.9E+02 0.0042 21.5 4.2 30 22-54 250-280 (287)
53 PF14827 Cache_3: Sensory doma 21.9 57 0.0012 20.2 1.3 29 4-36 27-55 (116)
54 PF08495 FIST: FIST N domain; 21.6 1.1E+02 0.0023 20.2 2.7 27 61-88 170-196 (198)
55 PF13540 RCC1_2: Regulator of 21.0 1.1E+02 0.0025 14.4 2.1 15 21-35 9-23 (30)
56 COG1582 FlgEa Uncharacterized 20.6 68 0.0015 18.9 1.3 14 65-78 31-44 (67)
57 PRK11649 putative peptidase; P 20.4 72 0.0016 25.1 1.8 28 29-57 192-219 (439)
58 PF12098 DUF3574: Protein of u 20.1 1.4E+02 0.0031 19.0 2.8 27 41-69 16-42 (104)
No 1
>PTZ00316 profilin; Provisional
Probab=100.00 E-value=3.1e-36 Score=202.89 Aligned_cols=86 Identities=38% Similarity=0.566 Sum_probs=81.2
Q ss_pred CchhhhhhhhccccCCCCccceEEEEec-CCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC
Q 034584 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGH-DGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP 79 (90)
Q Consensus 1 MSWq~yvd~~Li~~~~t~~v~~aaI~g~-dG~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~ 79 (90)
||||+|||++|++ +|+|++|||+|+ ||++||+|++| +++|+|+++|+++|+||+.++++||+|+|+||+++|+++
T Consensus 1 MSWQaYVD~~L~g---sg~v~kAAIiG~~DGsvWA~S~gF-~lspeE~~~I~~~F~d~~~l~~~Gi~l~G~KY~~lr~~~ 76 (150)
T PTZ00316 1 MSWQAYVDDSLIG---SGNMHSAAIVGLADGSYWAYGGSY-IPQPEEVAHILKCLGNFSLVQSSGVTIYGVKFFGLQSGT 76 (150)
T ss_pred CCHHHHHHhhhhc---cCCcceEEEEecCCCCEeecCCCC-ccCHHHHHHHHHHhcCCccccCCCEEEcceEEEEEEecc
Confidence 9999999999999 999999999997 89999999999 999999999999999999999999999999999999821
Q ss_pred ---CceEEEecCCC
Q 034584 80 ---GAVIRGKKTFE 90 (90)
Q Consensus 80 ---~~~iygkkg~~ 90 (90)
+++||||||.+
T Consensus 77 d~d~~~i~gKKg~~ 90 (150)
T PTZ00316 77 EGDMKYIFFKKGAA 90 (150)
T ss_pred CCCcceEEEecCCC
Confidence 58999999964
No 2
>smart00392 PROF Profilin. Binds actin monomers, membrane polyphosphoinositides and poly-L-proline.
Probab=100.00 E-value=2e-33 Score=185.03 Aligned_cols=86 Identities=49% Similarity=0.769 Sum_probs=81.6
Q ss_pred CchhhhhhhhccccCCCCccceEEEEecCCCEEEecCC--CCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeC
Q 034584 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSN--FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE 78 (90)
Q Consensus 1 MSWq~yvd~~Li~~~~t~~v~~aaI~g~dG~vwA~s~~--f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d 78 (90)
||||+|||++|++ ++++++|||+++||++||+|++ |..++|+|+++|+++|+||+.++++||+|+|+||+++|+|
T Consensus 1 MsWq~yvd~~l~~---~g~~~~AaI~g~dGsvWA~s~g~~f~~~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~Ky~~~~~d 77 (129)
T smart00392 1 MSWQAYVDNLLVG---SGCVDAAAIGGKDGSVWAASAGGNFQKITPEEIAAIAALFNSLAAVFSNGLTLGGQKYMVIRAD 77 (129)
T ss_pred CChHHHHHHHhhc---cCCCcEEEEEeCCCCeeeccCCCCCCcCCHHHHHHHHHHccCcchhccCCeEECCeEEEEEEec
Confidence 9999999999999 9999999999999999999999 7458999999999999999888999999999999999999
Q ss_pred CCceEEEecCCC
Q 034584 79 PGAVIRGKKTFE 90 (90)
Q Consensus 79 ~~~~iygkkg~~ 90 (90)
++++|||||.+
T Consensus 78 -~~~i~~kk~~~ 88 (129)
T smart00392 78 -DRSIMGKKGAG 88 (129)
T ss_pred -CcEEEeecCCc
Confidence 99999999864
No 3
>cd00148 PROF Profilin binds actin monomers, membrane polyphosphoinositides such as PI(4,5)P2, and poly-L-proline. Profilin can inhibit actin polymerization into F-actin by binding to monomeric actin (G-actin) and terminal F-actin subunits, but - as a regulator of the cytoskeleton - it may also promote actin polymerization. It plays a role in the assembly of branched actin filament networks, by activating WASP via binding to WASP's proline rich domain. Profilin may link the cytoskeleton with major signalling pathways by interacting with components of the phosphatidylinositol cycle and Ras pathway.
Probab=100.00 E-value=6.1e-33 Score=182.55 Aligned_cols=84 Identities=51% Similarity=0.908 Sum_probs=80.9
Q ss_pred chhhhhhhhccccCCCCccceEEEEecC-CCEEEecCC-CCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC
Q 034584 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHD-GSVWAQSSN-FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP 79 (90)
Q Consensus 2 SWq~yvd~~Li~~~~t~~v~~aaI~g~d-G~vwA~s~~-f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~ 79 (90)
|||+|||++|++ +++|++|||+|+| |++||+|++ | +++|+|+++|+++|+||+.++++||+|+|+||+++|+|
T Consensus 1 sWq~yvd~~L~~---~g~~~~aAI~g~d~g~vwA~s~~~f-~~t~~E~~~i~~~f~d~~~~~~~Gi~l~G~KY~~l~~d- 75 (127)
T cd00148 1 SWQAYVDDNLLG---TGKVDSAAIVGHDDGSVWAASAGGF-NLTPEEVGTLVAGFKDPDGVFSTGLTLGGQKYMVIRAD- 75 (127)
T ss_pred ChHHHHHHHHhh---cCCcCEEEEEecCCCCeEEecCCCC-ccCHHHHHHHHHHccCccccccCCEEECCeEEEEEecC-
Confidence 899999999999 9999999999998 899999999 9 99999999999999999999999999999999999999
Q ss_pred CceEEEecCCC
Q 034584 80 GAVIRGKKTFE 90 (90)
Q Consensus 80 ~~~iygkkg~~ 90 (90)
+++||||+|.+
T Consensus 76 ~~~i~~kk~~~ 86 (127)
T cd00148 76 DRSIYGKKGAG 86 (127)
T ss_pred ccEEEeeeCCC
Confidence 89999999863
No 4
>KOG1755 consensus Profilin [Cytoskeleton]
Probab=99.97 E-value=2.5e-30 Score=170.04 Aligned_cols=85 Identities=62% Similarity=1.052 Sum_probs=81.2
Q ss_pred CchhhhhhhhccccCCCCccceEEEEecCC-CEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC
Q 034584 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP 79 (90)
Q Consensus 1 MSWq~yvd~~Li~~~~t~~v~~aaI~g~dG-~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~ 79 (90)
||||+|||++|++ +++|++|||+|.+| +|||+|++| +++|+|+..+++.|+|+..++.+|++|+|+||+++|.|.
T Consensus 1 ~~Wq~Yvd~~l~~---~~~v~~AAIvg~~~~SVWA~S~~f-~~~~~e~~~~v~~F~d~~~~~~~Gl~L~Gqkylv~~ge~ 76 (128)
T KOG1755|consen 1 MSWQAYVDDHLLG---TGHVTRAAIVGYDGGSVWAASAGF-NVKPSEIPAIVAGFKDPGGLAGTGLTLGGQKYLVVRGEE 76 (128)
T ss_pred CCHHHHHHHhhcc---ccccceeeEEecCCCeeEEecCCC-cccHHHHHHHHhcccCcccccccceeecccEEEEEeccc
Confidence 9999999999999 99999999999966 999999999 999999999999999999999999999999999999997
Q ss_pred CceEEEecCC
Q 034584 80 GAVIRGKKTF 89 (90)
Q Consensus 80 ~~~iygkkg~ 89 (90)
++++|||++-
T Consensus 77 ~~~~~gk~~~ 86 (128)
T KOG1755|consen 77 GRVIRGKEGT 86 (128)
T ss_pred ceEEecccCC
Confidence 7889999863
No 5
>PF00235 Profilin: Profilin; InterPro: IPR002097 Profilin is a small eukaryotic protein that binds to monomeric actin (G-actin) in a 1:1 ratio thus preventing the polymerisation of actin into filaments (F-actin). It can also in certain circumstance promote actin polymerisation. Profilin also binds to polyphosphoinositides such as PIP2. Overall sequence similarity among profilin from organisms which belong to different phyla (ranging from fungi to mammals) is low, but the N-terminal region is relatively well conserved. That region is thought to be involved in the binding to actin. A protein structurally similar to profilin is present in the genome of Variola virus and Vaccinia virus (gene A42R). Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Ara t 8, Bet v 2, Cyn d 12, Hel a 2, Mer a 1 and Phl p 11.; GO: 0003779 actin binding, 0007010 cytoskeleton organization, 0015629 actin cytoskeleton; PDB: 1ACF_A 3NEC_C 2V8F_B 2V8C_A 2VK3_A 2JKF_A 2JKG_A 1F2K_B 2ACG_A 1YPR_B ....
Probab=99.96 E-value=5.7e-30 Score=165.75 Aligned_cols=84 Identities=45% Similarity=0.862 Sum_probs=79.8
Q ss_pred chhhhhhhhccccCCCCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCc
Q 034584 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGA 81 (90)
Q Consensus 2 SWq~yvd~~Li~~~~t~~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~ 81 (90)
|||+|||++|++ ++++++|||+|.||++||++++|++++|+|+++|+++|++|+.++.+||+|+|+||+++|+| ++
T Consensus 1 sW~~~i~~~L~~---~~~~~~aaI~~~dG~vwA~s~~f~~~~~~E~~~i~~~f~~~~~~~~~gi~l~G~kY~~~~~d-~~ 76 (121)
T PF00235_consen 1 SWQDYIDEQLIG---TGNITKAAIIGSDGSVWASSPGFSNISPEEAKAIIKAFNNPSKFPSNGITLGGKKYIVLRAD-DN 76 (121)
T ss_dssp THHHHHHTHHHT---TSSESEEEEEETTSSEEEEETTGGGCSHHHHHHHHHHHHSSSHHHHH-EEETTEEEEEEEEE-TT
T ss_pred ChhHHHHHHhcc---cCcEeEEEEEcCCCCEEEecCCCCCCCHHHHHHHHHHhcCchhcccCCeEEcCcEeEEEecC-Cc
Confidence 899999999999 89999999999999999999999889999999999999999888899999999999999999 99
Q ss_pred eEEEecCC
Q 034584 82 VIRGKKTF 89 (90)
Q Consensus 82 ~iygkkg~ 89 (90)
+||||+|.
T Consensus 77 ~i~~k~~~ 84 (121)
T PF00235_consen 77 SIYGKKGK 84 (121)
T ss_dssp EEEEEETT
T ss_pred eEEeeCCC
Confidence 99999985
No 6
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=79.31 E-value=0.57 Score=27.63 Aligned_cols=23 Identities=30% Similarity=0.328 Sum_probs=19.5
Q ss_pred hccccCCCCccceEEEEecCCCEEEe
Q 034584 10 HLMCDIDGHHLTSAAIVGHDGSVWAQ 35 (90)
Q Consensus 10 ~Li~~~~t~~v~~aaI~g~dG~vwA~ 35 (90)
.|.. ...+..++|++.||-+-++
T Consensus 8 ~l~~---~~gv~~~~l~~~dG~~i~~ 30 (91)
T PF03259_consen 8 ELQS---VPGVRGAVLVDKDGLVIAS 30 (91)
T ss_dssp HHHH---STTEEEEEEEETTSEEEEE
T ss_pred HHhC---CCCeeEEEEEcCCCCEEEE
Confidence 4555 7799999999999988887
No 7
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=68.09 E-value=6.1 Score=28.77 Aligned_cols=34 Identities=26% Similarity=0.474 Sum_probs=26.0
Q ss_pred ccceEEEEecCCCE-EEecCCCCCCCHHHHHHHHHhcC
Q 034584 19 HLTSAAIVGHDGSV-WAQSSNFPQFKPEEIAAIMKDFE 55 (90)
Q Consensus 19 ~v~~aaI~g~dG~v-wA~s~~f~~~~~~E~~~l~~~f~ 55 (90)
.+--.=+++.+|.+ ||.+..- +|+|+..|.++.+
T Consensus 216 ~~GYvyLVD~~grIRWagsG~A---t~~E~~~L~k~~~ 250 (252)
T PF05176_consen 216 YVGYVYLVDPNGRIRWAGSGPA---TPEELESLWKCVK 250 (252)
T ss_pred CcCeEEEECCCCeEEeCccCCC---CHHHHHHHHHHHh
Confidence 44466788889974 9987555 9999999998753
No 8
>PF14584 DUF4446: Protein of unknown function (DUF4446)
Probab=64.31 E-value=14 Score=25.05 Aligned_cols=30 Identities=27% Similarity=0.423 Sum_probs=22.2
Q ss_pred EEEEecCCC-EEEec-----CCCCCCCHHHHHHHHHh
Q 034584 23 AAIVGHDGS-VWAQS-----SNFPQFKPEEIAAIMKD 53 (90)
Q Consensus 23 aaI~g~dG~-vwA~s-----~~f~~~~~~E~~~l~~~ 53 (90)
-.|+|++++ +||+. +.. .++|||...|..+
T Consensus 115 tsI~~Re~s~~YaK~I~~G~S~~-~LS~EE~eal~~A 150 (151)
T PF14584_consen 115 TSIHSREESRTYAKPIVNGQSSY-PLSEEEKEALEKA 150 (151)
T ss_pred EeeecCCCcEEEEEEecCCcccc-cCCHHHHHHHHHh
Confidence 356677885 78875 235 7899999998775
No 9
>PF02770 Acyl-CoA_dh_M: Acyl-CoA dehydrogenase, middle domain; InterPro: IPR006091 Acyl-CoA dehydrogenases (1.3.99.3 from EC) are a family of flavoproteins that catalyse the alpha,beta-dehydrogenation of acyl-CoA thioesters to the corresponding trans 2,3-enoyl CoA-products with the concomitant reduction of enzyme-bound FAD. Different family members share a high sequence identity, catalytic mechanisms, and structural properties, but differ in the position of their catalytic bases and in their substrate binding specificity. Butyryl-CoA dehydrogenase [] prefers short chain substrates, medium chain- and long-chain acyl-CoA dehydrogenases prefer medium and long chain substrates, respectively, and Isovaleryl-CoA dehydrogenase [] prefers branched-chain substrates. The monomeric enzyme is folded into three domains of approximately equal size, where the N-terminal domain is all-alpha, the middle domain is an open (5,8) barrel, and the C-terminal domain is a four-helical bundle. The constituent families differ in the numbers of C-terminal domains. This entry represents the middle beta-barrel domain found in medium chain acyl-CoA dehydrogenases, as well as in the related peroxisomal acyl-CoA oxidase-II enzymes. Acyl-CoA oxidase (ACO; 1.3.3.6 from EC) catalyzes the first and rate-determining step of the peroxisomal beta-oxidation of fatty acids [].; GO: 0003995 acyl-CoA dehydrogenase activity, 0055114 oxidation-reduction process; PDB: 3MDD_B 1UDY_C 3MDE_B 2UXW_A 3B96_A 1SIQ_A 1SIR_A 2R0N_A 2R0M_A 2D29_B ....
Probab=63.17 E-value=9.2 Score=20.72 Aligned_cols=26 Identities=19% Similarity=0.275 Sum_probs=18.6
Q ss_pred ccceEEcCEEEEEEEeCC-C-ceEEEec
Q 034584 62 PTGLHLGGTKYMVIQGEP-G-AVIRGKK 87 (90)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d~-~-~~iygkk 87 (90)
..|+.|+|+|+++..+.. + -++.+|-
T Consensus 24 ~~~~~L~G~K~~v~~~~~a~~~~v~ar~ 51 (52)
T PF02770_consen 24 GDGYVLNGEKRFVSNAPDADWFLVFART 51 (52)
T ss_dssp TTEEEEEEEEEEEETTTTESEEEEEEEE
T ss_pred cceEEEeeEEEEECCcCccCEEEEEEEE
Confidence 578999999999987653 2 2355653
No 10
>PF10144 SMP_2: Bacterial virulence factor haemolysin; InterPro: IPR019305 This entry represents a group of bacterial proteins that are membrane proteins that effect the expression of haemolysin under anaerobic conditions [].
Probab=62.25 E-value=11 Score=26.76 Aligned_cols=29 Identities=28% Similarity=0.361 Sum_probs=23.9
Q ss_pred hhhhhccccCCCCccceEEEEecCCCEEEecCC
Q 034584 6 YVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSN 38 (90)
Q Consensus 6 yvd~~Li~~~~t~~v~~aaI~g~dG~vwA~s~~ 38 (90)
.++ +|.. ...|-+|+|++.+|..-|.|.+
T Consensus 77 ll~-~L~~---d~~VldAsIYd~~G~lLA~S~~ 105 (210)
T PF10144_consen 77 LLN-QLAK---DPFVLDASIYDADGVLLAQSGE 105 (210)
T ss_pred HHH-HHhc---CCeEeEEEEECCCCCEEEEcCC
Confidence 344 5666 7799999999999999999865
No 11
>PRK00468 hypothetical protein; Provisional
Probab=57.13 E-value=22 Score=21.28 Aligned_cols=43 Identities=14% Similarity=0.274 Sum_probs=23.6
Q ss_pred HHHHHHhc-CCCCCCCccceEEcCEEEEEEEeCCC--ceEEEecCC
Q 034584 47 IAAIMKDF-EEPGSLAPTGLHLGGTKYMVIQGEPG--AVIRGKKTF 89 (90)
Q Consensus 47 ~~~l~~~f-~d~~~~~~~Gi~l~G~KY~~lr~d~~--~~iygkkg~ 89 (90)
+..|+..| ++|..+.-+-..-+..-.+.++++++ .-|+||+|.
T Consensus 5 v~~iv~~LVd~Pe~v~V~~~~~~~~~~~~l~v~~~D~GrVIGk~Gr 50 (75)
T PRK00468 5 VETIAKALVDNPDAVQVNEIEGEQSVILELKVAPEDMGKVIGKQGR 50 (75)
T ss_pred HHHHHHHhcCCCCeEEEEEEeCCCeEEEEEEEChhhCcceecCCCh
Confidence 45566666 56765543433323333445666643 348899985
No 12
>PRK02821 hypothetical protein; Provisional
Probab=51.20 E-value=24 Score=21.26 Aligned_cols=43 Identities=7% Similarity=0.215 Sum_probs=25.0
Q ss_pred HHHHHHhc-CCCCCCCccceEEcCEEEEEEEeCCCc--eEEEecCC
Q 034584 47 IAAIMKDF-EEPGSLAPTGLHLGGTKYMVIQGEPGA--VIRGKKTF 89 (90)
Q Consensus 47 ~~~l~~~f-~d~~~~~~~Gi~l~G~KY~~lr~d~~~--~iygkkg~ 89 (90)
+..|++.+ ++|..+.-+-..-.+...+.++++++. -|.||+|.
T Consensus 6 v~~ivk~LVd~Pe~V~V~~~~~~~~~~i~l~v~~~D~GrVIGk~Gr 51 (77)
T PRK02821 6 VEHLVRGIVDNPDDVRVDSHTNRRGRTLEVRVHPDDLGKVIGRGGR 51 (77)
T ss_pred HHHHHHHhCCCCCeEEEEEEECCCcEEEEEEEChhhCcceeCCCCc
Confidence 34566665 456654434333445556677776532 37799985
No 13
>COG2018 Uncharacterized distant relative of homeotic protein bithoraxoid [General function prediction only]
Probab=49.06 E-value=42 Score=22.01 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=26.1
Q ss_pred CCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHH
Q 034584 17 GHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMK 52 (90)
Q Consensus 17 t~~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~ 52 (90)
.+.+..++|.+.||=+-|++.-+ +...+-+..+.+
T Consensus 16 v~gv~ga~Ivs~DGL~ia~~~p~-~~d~e~vaA~~a 50 (119)
T COG2018 16 VPGVRGALVVSKDGLPIAAELPG-NVDAEIVAAMAA 50 (119)
T ss_pred ccCceEEEEEccCCceEeecCCC-cccHHHHHHHHH
Confidence 46899999999999988877556 556555555554
No 14
>PF01509 TruB_N: TruB family pseudouridylate synthase (N terminal domain); InterPro: IPR002501 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. TruB is responsible for the pseudouridine residue present in the T loops of virtually all tRNAs. TruB recognises the preformed 3-D structure of the T loop primarily through shape complementarity. It accesses its substrate uridyl residue by flipping out the nucleotide and disrupts the tertiary structure of tRNA []. This entry represents pseudouridine synthase TruB, as well as Cbf5p that modifies rRNA [].; GO: 0006396 RNA processing; PDB: 1SGV_B 2AUS_C 3UAI_A 3U28_A 2RFK_A 3LWV_A 3HJY_A 3HAX_A 3LWO_A 3HAY_A ....
Probab=47.84 E-value=33 Score=22.99 Aligned_cols=43 Identities=12% Similarity=0.263 Sum_probs=27.8
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHHhcCCC---CCCCccceEEcCEEE
Q 034584 29 DGSVWAQSSNFPQFKPEEIAAIMKDFEEP---GSLAPTGLHLGGTKY 72 (90)
Q Consensus 29 dG~vwA~s~~f~~~~~~E~~~l~~~f~d~---~~~~~~Gi~l~G~KY 72 (90)
+|.+...++-. .++.+++..++..|.-. .+-.-+.+.++|++-
T Consensus 60 ~G~v~~~~~~~-~it~e~l~~~l~~f~G~~~Q~pP~ySAvki~G~ra 105 (149)
T PF01509_consen 60 EGEVTETKPYD-HITEEDLEKVLAKFQGEIEQVPPMYSAVKINGKRA 105 (149)
T ss_dssp TSSEEEE---T-T--HHHHHHHHHHTSEEEEES-SSSSSSECTTCEH
T ss_pred eeeEEEeeccc-cCCHHHHHHHHHhCcCCEeeeCchheeEcCCCccH
Confidence 57888876555 88999999999998531 223457888888764
No 15
>PF07485 DUF1529: Domain of Unknown Function (DUF1259); InterPro: IPR011094 This family is the lppY/lpqO homologue family. They are related to 'probable conserved lipoproteins' LppY and LpqO from Mycobacterium bovis.
Probab=43.85 E-value=16 Score=23.97 Aligned_cols=39 Identities=8% Similarity=0.242 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCceEE
Q 034584 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIR 84 (90)
Q Consensus 38 ~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~~iy 84 (90)
+| -+.++|++.+++++ +.+||.+--.+=..+..+ ++.+|
T Consensus 62 d~-vll~~EV~pvi~aL------~~~GI~vtAlHNH~l~e~-Prl~y 100 (123)
T PF07485_consen 62 DF-VLLEDEVNPVISAL------RKNGIEVTALHNHWLFEQ-PRLFY 100 (123)
T ss_pred cE-EecHHHHHHHHHHH------HHCCceEEEEecccccCC-CCEEE
Confidence 46 78999999999964 577898888888888888 88776
No 16
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=42.90 E-value=36 Score=15.50 Aligned_cols=16 Identities=19% Similarity=0.453 Sum_probs=11.7
Q ss_pred eEEEEecCCCEEEecC
Q 034584 22 SAAIVGHDGSVWAQSS 37 (90)
Q Consensus 22 ~aaI~g~dG~vwA~s~ 37 (90)
.+...+.+|.+|-.|.
T Consensus 8 ~~i~~D~~G~lWigT~ 23 (24)
T PF07494_consen 8 YSIYEDSDGNLWIGTY 23 (24)
T ss_dssp EEEEE-TTSCEEEEET
T ss_pred EEEEEcCCcCEEEEeC
Confidence 4667778999998774
No 17
>PF00166 Cpn10: Chaperonin 10 Kd subunit; InterPro: IPR020818 The chaperonins are `helper' molecules required for correct folding and subsequent assembly of some proteins []. These are required for normal cell growth [], and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions. Type I chaperonins present in eubacteria, mitochondria and chloroplasts require the concerted action of 2 proteins, chaperonin 60 (cpn60) and chaperonin 10 (cpn10) []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between six to eight identical subunits, while the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The central cavity of the cylindrical cpn60 tetradecamer provides as isolated environment for protein folding whilst cpn-10 binds to cpn-60 and synchronizes the release of the folded protein in an Mg2+-ATP dependent manner []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. Escherichia coli GroES has also been shown to bind ATP cooperatively, and with an affinity comparable to that of GroEL []. Each GroEL subunit contains three structurally distinct domains: an apical, an intermediate and an equatorial domain. The apical domain contains the binding sites for both GroES and the unfolded protein substrate. The equatorial domain contains the ATP-binding site and most of the oligomeric contacts. The intermediate domain links the apical and equatorial domains and transfers allosteric information between them. The GroEL oligomer is a tetradecamer, cylindrically shaped, that is organised in two heptameric rings stacked back to back. Each GroEL ring contains a central cavity, known as the `Anfinsen cage', that provides an isolated environment for protein folding. The identical 10 kDa subunits of GroES form a dome-like heptameric oligomer in solution. ATP binding to GroES may be important in charging the seven subunits of the interacting GroEL ring with ATP, to facilitate cooperative ATP binding and hydrolysis for substrate protein release.; GO: 0006457 protein folding, 0005737 cytoplasm; PDB: 1PF9_Q 1AON_P 1SX4_T 1SVT_R 2C7D_P 1PCQ_O 2C7C_Q 1GRU_Q 1WNR_F 1P3H_I ....
Probab=40.70 E-value=40 Score=20.55 Aligned_cols=17 Identities=24% Similarity=0.677 Sum_probs=15.1
Q ss_pred ccceEEcCEEEEEEEeC
Q 034584 62 PTGLHLGGTKYMVIQGE 78 (90)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (90)
..-+.++|++|+++|.+
T Consensus 71 g~~v~~~~~~~~~~~~~ 87 (93)
T PF00166_consen 71 GTEVKFDGEKYLIVRED 87 (93)
T ss_dssp SEEEEETTEEEEEEEGG
T ss_pred ceEEEECCEEEEEEEHH
Confidence 55789999999999988
No 18
>cd00320 cpn10 Chaperonin 10 Kd subunit (cpn10 or GroES); Cpn10 cooperates with chaperonin 60 (cpn60 or GroEL), an ATPase, to assist the folding and assembly of proteins and is found in eubacterial cytosol, as well as in the matrix of mitochondria and chloroplasts. It forms heptameric rings with a dome-like structure, forming a lid to the large cavity of the tetradecameric cpn60 cylinder and thereby tightly regulating release and binding of proteins to the cpn60 surface.
Probab=39.57 E-value=32 Score=21.14 Aligned_cols=17 Identities=24% Similarity=0.622 Sum_probs=15.1
Q ss_pred ccceEEcCEEEEEEEeC
Q 034584 62 PTGLHLGGTKYMVIQGE 78 (90)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (90)
..=|.++|++|+++|.+
T Consensus 71 g~~v~~~~~~y~i~~~~ 87 (93)
T cd00320 71 GTEVKLDGEEYLILRES 87 (93)
T ss_pred ceEEEECCEEEEEEEHH
Confidence 55699999999999988
No 19
>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function.
Probab=39.48 E-value=1e+02 Score=20.77 Aligned_cols=19 Identities=32% Similarity=0.368 Sum_probs=15.6
Q ss_pred CCCccceEEEEecCCCEEE
Q 034584 16 DGHHLTSAAIVGHDGSVWA 34 (90)
Q Consensus 16 ~t~~v~~aaI~g~dG~vwA 34 (90)
|-|....-||++++|.+..
T Consensus 38 DPG~ttgiAildL~G~~l~ 56 (138)
T PF04312_consen 38 DPGTTTGIAILDLDGELLD 56 (138)
T ss_pred CCCceeEEEEEecCCcEEE
Confidence 3678899999999998643
No 20
>PF08356 EF_assoc_2: EF hand associated; InterPro: IPR013567 This region predominantly appears near EF-hands (IPR002048 from INTERPRO) in GTP-binding proteins. It is found in all three eukaryotic kingdoms.
Probab=39.17 E-value=29 Score=21.54 Aligned_cols=30 Identities=30% Similarity=0.586 Sum_probs=21.8
Q ss_pred CCCHHHHHHHHHhcCC--CCCCCccceEEcCE
Q 034584 41 QFKPEEIAAIMKDFEE--PGSLAPTGLHLGGT 70 (90)
Q Consensus 41 ~~~~~E~~~l~~~f~d--~~~~~~~Gi~l~G~ 70 (90)
.++++|+..|.+.... |.....+||++.|-
T Consensus 3 pL~~~el~~ik~~v~~~~~~gv~~~GiT~~GF 34 (89)
T PF08356_consen 3 PLQPQELEDIKKVVRENIPDGVNDNGITLDGF 34 (89)
T ss_pred CCCHHHHHHHHHHHHHHCCCCcCCCccchhhH
Confidence 5689999888877632 44566789988773
No 21
>COG1837 Predicted RNA-binding protein (contains KH domain) [General function prediction only]
Probab=38.55 E-value=72 Score=19.22 Aligned_cols=43 Identities=16% Similarity=0.207 Sum_probs=26.8
Q ss_pred HHHHHHhc-CCCCCCCccceEEcCEEEEEEEeCCC--ceEEEecCC
Q 034584 47 IAAIMKDF-EEPGSLAPTGLHLGGTKYMVIQGEPG--AVIRGKKTF 89 (90)
Q Consensus 47 ~~~l~~~f-~d~~~~~~~Gi~l~G~KY~~lr~d~~--~~iygkkg~ 89 (90)
+..|++.| +.|..+.-.=.......-+-++.+++ .-|.||+|.
T Consensus 5 v~~ivk~lVd~Pd~v~V~~~~~~~~~~~~l~v~~~D~GkvIGk~GR 50 (76)
T COG1837 5 VEFIVKPLVDNPDDVRVDEEEGEKTVTIELRVAPEDMGKVIGKQGR 50 (76)
T ss_pred HHHHHHHhcCCccceEEEEEecCCeEEEEEEECcccccceecCCCh
Confidence 34566665 56766654444446666677777653 347799884
No 22
>PRK11246 hypothetical protein; Provisional
Probab=38.54 E-value=47 Score=23.97 Aligned_cols=27 Identities=19% Similarity=0.268 Sum_probs=23.1
Q ss_pred hccccCCCCccceEEEEecCCCEEEecCCC
Q 034584 10 HLMCDIDGHHLTSAAIVGHDGSVWAQSSNF 39 (90)
Q Consensus 10 ~Li~~~~t~~v~~aaI~g~dG~vwA~s~~f 39 (90)
+|.. ...|=+|.|++.+|..-|+|.+.
T Consensus 80 ~La~---d~~VlDAsIY~~~G~llA~S~~~ 106 (218)
T PRK11246 80 QLTD---ESRILDASVYDEQGDLIARSGES 106 (218)
T ss_pred HHhc---CCceeeEEEECCCCCEEEecCCC
Confidence 5666 67999999999999999998754
No 23
>COG4831 Roadblock/LC7 domain [Function unknown]
Probab=36.79 E-value=1.1e+02 Score=19.50 Aligned_cols=64 Identities=20% Similarity=0.286 Sum_probs=39.3
Q ss_pred hhhhccccCCCCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhc------------------CCCCCCCccceEEc
Q 034584 7 VDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDF------------------EEPGSLAPTGLHLG 68 (90)
Q Consensus 7 vd~~Li~~~~t~~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~~f------------------~d~~~~~~~Gi~l~ 68 (90)
+| .|+. -..+-.|.+|+.||.+-+--.+. |+|.+.+++-| .-..-.+.+|.-+.
T Consensus 5 Ld-eLlq---i~Gv~AAGefs~DGkLv~Ykgdm----~k~~A~maAkmcaAnnmM~~~qA~~~t~~sg~~w~P~~gwa~a 76 (109)
T COG4831 5 LD-ELLQ---IKGVMAAGEFSPDGKLVEYKGDM----PKEMAEMAAKMCAANNMMGDMQASGYTALSGMNWTPQNGWAVA 76 (109)
T ss_pred HH-HHhC---ccceeEeceeCCCCceEEeeCCC----CHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCccccccceEEe
Confidence 45 5665 45677899999999877755444 33333333211 11123457899999
Q ss_pred CEEEEEEEeC
Q 034584 69 GTKYMVIQGE 78 (90)
Q Consensus 69 G~KY~~lr~d 78 (90)
|-||.+--.-
T Consensus 77 gg~yavci~G 86 (109)
T COG4831 77 GGKYAVCIMG 86 (109)
T ss_pred cCceEEEEec
Confidence 9999865433
No 24
>PRK00364 groES co-chaperonin GroES; Reviewed
Probab=35.82 E-value=43 Score=20.67 Aligned_cols=17 Identities=18% Similarity=0.599 Sum_probs=14.8
Q ss_pred ccceEEcCEEEEEEEeC
Q 034584 62 PTGLHLGGTKYMVIQGE 78 (90)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (90)
..=|.++|++|+++|.+
T Consensus 72 g~ev~~~~~~y~iv~~~ 88 (95)
T PRK00364 72 GTEVKIDGEEYLILRES 88 (95)
T ss_pred CeEEEECCEEEEEEEHH
Confidence 44689999999999988
No 25
>PRK14533 groES co-chaperonin GroES; Provisional
Probab=35.06 E-value=48 Score=20.49 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=14.9
Q ss_pred ccceEEcCEEEEEEEeC
Q 034584 62 PTGLHLGGTKYMVIQGE 78 (90)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (90)
.+=|.++|++|+++|.+
T Consensus 67 g~ev~~~~~~y~iv~e~ 83 (91)
T PRK14533 67 GTEIKIDDEDYIIIDVN 83 (91)
T ss_pred CeEEEECCEEEEEEEhH
Confidence 45689999999999987
No 26
>PRK01064 hypothetical protein; Provisional
Probab=34.62 E-value=98 Score=18.57 Aligned_cols=43 Identities=19% Similarity=0.172 Sum_probs=22.6
Q ss_pred HHHHHHhc-CCCCCCCccceEEcCEEEEEEEeCCC--ceEEEecCC
Q 034584 47 IAAIMKDF-EEPGSLAPTGLHLGGTKYMVIQGEPG--AVIRGKKTF 89 (90)
Q Consensus 47 ~~~l~~~f-~d~~~~~~~Gi~l~G~KY~~lr~d~~--~~iygkkg~ 89 (90)
+..|+..+ ++|..+.-.-..-++.-.+-++.+++ ..+.||+|.
T Consensus 5 v~~iv~~LVd~Pe~V~V~~~~~~~~~~~~l~v~~~D~g~vIGk~G~ 50 (78)
T PRK01064 5 LAYIVKNLVDRPEEVHIKEVQGTHTIIYELTVAKPDIGKIIGKEGR 50 (78)
T ss_pred HHHHHHHhcCCCCeEEEEEEeCCCEEEEEEEECcccceEEECCCCc
Confidence 35566666 55665443322223333444555533 468899885
No 27
>PTZ00414 10 kDa heat shock protein; Provisional
Probab=33.75 E-value=36 Score=21.54 Aligned_cols=17 Identities=6% Similarity=0.429 Sum_probs=15.0
Q ss_pred ccceEEcCEEEEEEEeC
Q 034584 62 PTGLHLGGTKYMVIQGE 78 (90)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (90)
.+=+.++|++|+++|.+
T Consensus 76 Gtevk~dg~ey~i~~e~ 92 (100)
T PTZ00414 76 GSSVKVEGEEFFLYNED 92 (100)
T ss_pred CcEEEECCEEEEEEEhH
Confidence 45699999999999987
No 28
>COG3726 AhpA Uncharacterized membrane protein affecting hemolysin expression [General function prediction only]
Probab=33.69 E-value=21 Score=25.58 Aligned_cols=31 Identities=19% Similarity=0.300 Sum_probs=24.2
Q ss_pred hhhhhhccccCCCCccceEEEEecCCCEEEecCCC
Q 034584 5 TYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNF 39 (90)
Q Consensus 5 ~yvd~~Li~~~~t~~v~~aaI~g~dG~vwA~s~~f 39 (90)
+.+| +|.. ..-|-+|+|++.||...|.+..+
T Consensus 76 alln-ql~k---~~~VldAsIY~~~g~LlA~ag~~ 106 (214)
T COG3726 76 ALLN-QLTK---ESLVLDASIYDEDGDLLARAGSS 106 (214)
T ss_pred HHHH-HHhh---cceeeeceeecccchhHHhcccc
Confidence 3344 5665 66888999999999999988766
No 29
>PF13856 Gifsy-2: ATP-binding sugar transporter from pro-phage; PDB: 2PP6_A.
Probab=32.42 E-value=56 Score=19.83 Aligned_cols=21 Identities=14% Similarity=0.189 Sum_probs=15.7
Q ss_pred CCCccceEEcCEEEEEEEeCC
Q 034584 59 SLAPTGLHLGGTKYMVIQGEP 79 (90)
Q Consensus 59 ~~~~~Gi~l~G~KY~~lr~d~ 79 (90)
+.+..-++++|++|.+.+...
T Consensus 66 P~~gd~v~~dG~~y~V~~~~~ 86 (95)
T PF13856_consen 66 PRRGDRVVIDGESYTVTRFQE 86 (95)
T ss_dssp --TT-EEEETTEEEEEEEEEE
T ss_pred CCCCCEEEECCeEEEEeEEec
Confidence 345678999999999999763
No 30
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=31.83 E-value=56 Score=18.68 Aligned_cols=18 Identities=22% Similarity=0.403 Sum_probs=15.4
Q ss_pred CCCHHHHHHHHHhcCCCC
Q 034584 41 QFKPEEIAAIMKDFEEPG 58 (90)
Q Consensus 41 ~~~~~E~~~l~~~f~d~~ 58 (90)
.+++.|..+|+++|++..
T Consensus 28 Gv~~~e~~aIi~~F~~~~ 45 (57)
T PF05952_consen 28 GVDKDEQKAIIDAFKDEE 45 (57)
T ss_pred cCCHHHHHHHHHHHcccc
Confidence 458999999999998764
No 31
>PHA02102 hypothetical protein
Probab=31.48 E-value=53 Score=19.42 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=12.8
Q ss_pred ccceEEEEecCCCEEEec
Q 034584 19 HLTSAAIVGHDGSVWAQS 36 (90)
Q Consensus 19 ~v~~aaI~g~dG~vwA~s 36 (90)
.-..|-.+..||++|-.|
T Consensus 53 Eg~eaF~~~SDGsvWm~S 70 (72)
T PHA02102 53 EGGEAFVARSDGSVWMPS 70 (72)
T ss_pred cccceeeeccCCcEeccC
Confidence 334666677799999865
No 32
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=30.90 E-value=1.1e+02 Score=21.10 Aligned_cols=31 Identities=10% Similarity=0.400 Sum_probs=22.1
Q ss_pred eEEEEecCCC-EEEecCCCCCCCHHHHHHHHHhcC
Q 034584 22 SAAIVGHDGS-VWAQSSNFPQFKPEEIAAIMKDFE 55 (90)
Q Consensus 22 ~aaI~g~dG~-vwA~s~~f~~~~~~E~~~l~~~f~ 55 (90)
.-.+++.+|. .|+...- ++++|++..+.+++
T Consensus 127 aiiVlDK~G~V~F~k~G~---Ls~~Ev~qVi~Ll~ 158 (160)
T PF09695_consen 127 AIIVLDKQGKVQFVKEGA---LSPAEVQQVIALLK 158 (160)
T ss_pred eEEEEcCCccEEEEECCC---CCHHHHHHHHHHHh
Confidence 3455667886 4776544 49999999988764
No 33
>PF09176 Mpt_N: Methylene-tetrahydromethanopterin dehydrogenase, N-terminal; InterPro: IPR015259 Prokaryotic methylene-tetrahydromethanopterin dehydrogenase catalyses the dehydrogenation of methylene-tetrahydromethanopterin during growth on one-carbon compounds such as methanol. It can also catalyse the reversible dehydrogenation of methylene-tetrahydrofolate, though at much lower efficiency []. The pterin domain of this protein is composed of two alpha-beta segments found at the N- and C-terminal ends of the polypeptide respectivly. This entry represents the N-terminal segment of the pterin domain, with a core comprising three alpha/beta/alpha layers in which each sheet contains four strands. ; PDB: 1LUA_A 1LU9_C.
Probab=30.75 E-value=14 Score=22.65 Aligned_cols=31 Identities=26% Similarity=0.608 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHH--hc-CCCCCCCccceEEcCEE
Q 034584 41 QFKPEEIAAIMK--DF-EEPGSLAPTGLHLGGTK 71 (90)
Q Consensus 41 ~~~~~E~~~l~~--~f-~d~~~~~~~Gi~l~G~K 71 (90)
+++++|+..|+. .| +.|+.+..+||.|+|+.
T Consensus 20 ~V~~~~V~~LvqdaIFsR~P~~~~~TaiFIGG~d 53 (81)
T PF09176_consen 20 GVTPDEVRGLVQDAIFSRGPKDLKRTAIFIGGRD 53 (81)
T ss_dssp S--TTTHHHHHHHHHSSS-GGGGGGEEEEEE-S-
T ss_pred CcCHHHhhhhhcceeEccCCcCCceeEEEECCcc
Confidence 679999999986 35 56677788999999964
No 34
>KOG2500 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.59 E-value=80 Score=23.20 Aligned_cols=33 Identities=18% Similarity=0.168 Sum_probs=20.2
Q ss_pred HHHhcCCCCCCCccceEEcCEEEEEEEeCCCce
Q 034584 50 IMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAV 82 (90)
Q Consensus 50 l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~~ 82 (90)
++++|-|.....+-=-.+.--+|||||.++++-
T Consensus 68 fA~c~id~~~~~avEav~DSSRYFViRv~dgng 100 (253)
T KOG2500|consen 68 FAQCPIDEGPGNAVEAVSDSSRYFVIRVEDGNG 100 (253)
T ss_pred hhhCcccCCCCccceeecccceEEEEEEeCCCc
Confidence 455555543332333456677999999987553
No 35
>COG1526 FdhD Uncharacterized protein required for formate dehydrogenase activity [Energy production and conversion]
Probab=28.86 E-value=51 Score=24.42 Aligned_cols=23 Identities=17% Similarity=0.257 Sum_probs=20.3
Q ss_pred CCccceEEEEecCCCEEEecCCC
Q 034584 17 GHHLTSAAIVGHDGSVWAQSSNF 39 (90)
Q Consensus 17 t~~v~~aaI~g~dG~vwA~s~~f 39 (90)
||.++.||+|+.+|.++..-.+-
T Consensus 156 TG~~H~Aal~~~~g~l~~~~EDV 178 (266)
T COG1526 156 TGGVHAAALFDPDGELLLVREDV 178 (266)
T ss_pred hCcEeeEEEEcCCCCEEEEEEec
Confidence 88999999999999999877653
No 36
>PF00649 Copper-fist: Copper fist DNA binding domain; InterPro: IPR001083 Some fungal transcription factors contain an N-terminal domain, the copper fist, which seems to be involved in copper-dependent DNA-binding [, ]. These proteins activate the transcription of the metallothionein gene in response to copper. Metallothionein maintains copper levels in yeast [, ]. The copper fist domain, which is similar in structure to metallothionein itself, undergoes a large conformational change on copper-binding that allows DNA-binding. The domain contains a conserved array of zinc-binding residues (Cys-X2-Cys-X8-Cys-X-His) and forms a three-stranded antiparallel beta-sheet with two short helical segments that project from one end of the beta-sheet []. Conserved residues form a basic patch that may be important for DNA binding. ; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0005507 copper ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1CO4_A.
Probab=26.52 E-value=72 Score=17.01 Aligned_cols=12 Identities=25% Similarity=0.504 Sum_probs=9.6
Q ss_pred eEEcCEEEEEEE
Q 034584 65 LHLGGTKYMVIQ 76 (90)
Q Consensus 65 i~l~G~KY~~lr 76 (90)
|.++|+||-+..
T Consensus 2 ili~g~KyAC~~ 13 (40)
T PF00649_consen 2 ILIDGEKYACES 13 (40)
T ss_dssp EEETTEEEEETT
T ss_pred eeECCeEEEhhh
Confidence 468999998754
No 37
>PHA02591 hypothetical protein; Provisional
Probab=26.42 E-value=23 Score=21.77 Aligned_cols=19 Identities=21% Similarity=0.340 Sum_probs=15.0
Q ss_pred ccceEEcCEEEEEEEeCCC
Q 034584 62 PTGLHLGGTKYMVIQGEPG 80 (90)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d~~ 80 (90)
..=+.++|.+|++..-||.
T Consensus 30 ~k~vqv~~~ryfi~~~dd~ 48 (83)
T PHA02591 30 QKVVQVGQTRYFVESEDDL 48 (83)
T ss_pred HHhheeCCEEEEEeccchH
Confidence 3457899999999998843
No 38
>PF02911 Formyl_trans_C: Formyl transferase, C-terminal domain; InterPro: IPR005793 Methionyl-tRNA formyltransferase (2.1.2.9 from EC) transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. This family also includes formyltetrahydrofolate dehydrogenases, which produce formate from formyl-tetrahydrofolate. These enzymes contain an N-terminal domain in common with other formyl transferase enzymes (IPR002376 from INTERPRO). The C-terminal domain has an open beta-barrel fold [].; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3RFO_D 1Z7E_C 2BLN_A 1YRW_A 1FMT_A 2FMT_B 3Q0I_A 3R8X_A 3TQQ_A 2BW0_A ....
Probab=26.23 E-value=1.5e+02 Score=17.46 Aligned_cols=37 Identities=16% Similarity=0.362 Sum_probs=27.2
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeC
Q 034584 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE 78 (90)
Q Consensus 38 ~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d 78 (90)
+| +-+.+|+..++.+|. |- ...=..++|++..++++.
T Consensus 10 dw-~~~A~~I~~~vRal~-p~--pga~~~~~~~~i~i~~~~ 46 (100)
T PF02911_consen 10 DW-NQSAEEIYNLVRALN-PY--PGAFTTFNGKRIKILKAE 46 (100)
T ss_dssp -T-TSBHHHHHHHHHHTT-TT--T-EEEEETTEEEEEEEEE
T ss_pred CC-CCCHHHHHHHHhCCC-CC--CCEEEeeCCeEEEEEeee
Confidence 47 779999999999997 42 222356799999888875
No 39
>PRK06988 putative formyltransferase; Provisional
Probab=26.12 E-value=1.7e+02 Score=21.73 Aligned_cols=38 Identities=16% Similarity=0.378 Sum_probs=27.7
Q ss_pred CCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeC
Q 034584 38 NFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE 78 (90)
Q Consensus 38 ~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d 78 (90)
+| +-+..|+..++.+|.+|- ...=..++|+|+.++++.
T Consensus 211 dw-~~~a~~I~~~iRA~~~p~--pga~~~~~g~~v~i~~a~ 248 (312)
T PRK06988 211 DW-SKPAAQVYNLIRAVAPPY--PGAFTDLGGTRFVVARAR 248 (312)
T ss_pred CC-CCCHHHHHHHhccCCCCC--CeeEEEECCEEEEEEEEE
Confidence 36 567899999999996542 122247899999998865
No 40
>PF02866 Ldh_1_C: lactate/malate dehydrogenase, alpha/beta C-terminal domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR022383 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the C-terminal, and is thought to be an is an unusual alpha+beta fold.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 4MDH_B 5MDH_A 1GV0_A 1GUZ_D 2EWD_B 2FRM_D 2FNZ_B 2FN7_B 2FM3_A 1LTH_T ....
Probab=25.62 E-value=1.3e+02 Score=19.92 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=22.8
Q ss_pred cceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhc
Q 034584 20 LTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDF 54 (90)
Q Consensus 20 v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~~f 54 (90)
+.-=+++|.+| +|..-+++ .++++|.+.|..+.
T Consensus 128 ~s~P~~ig~~G-v~~i~~~~-~L~~~E~~~l~~sa 160 (174)
T PF02866_consen 128 FSVPVVIGKNG-VEKIVEDL-PLSEEEQEKLKESA 160 (174)
T ss_dssp EEEEEEEETTE-EEEEECSB-SSTHHHHHHHHHHH
T ss_pred ecceEEEcCCe-eEEEeCCC-CCCHHHHHHHHHHH
Confidence 34456667666 66655557 88999998887654
No 41
>COG4667 Predicted esterase of the alpha-beta hydrolase superfamily [General function prediction only]
Probab=25.55 E-value=2.7e+02 Score=21.04 Aligned_cols=28 Identities=14% Similarity=0.292 Sum_probs=19.9
Q ss_pred HHHHHHHHHhcCCCCCCCccceEEcCEEEE
Q 034584 44 PEEIAAIMKDFEEPGSLAPTGLHLGGTKYM 73 (90)
Q Consensus 44 ~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~ 73 (90)
.+++..|-+. ..-++.+.+++|+|++|+
T Consensus 140 ~~~m~viRAS--SaiPf~~~~V~i~G~~Yl 167 (292)
T COG4667 140 FNWLDVIRAS--SAIPFYSEGVEINGKNYL 167 (292)
T ss_pred HHHHHHHHHh--ccCCCCCCCeEECCEecc
Confidence 4556666553 323478999999999997
No 42
>PF13822 ACC_epsilon: Acyl-CoA carboxylase epsilon subunit
Probab=25.32 E-value=63 Score=18.40 Aligned_cols=15 Identities=27% Similarity=0.268 Sum_probs=12.6
Q ss_pred CCCHHHHHHHHHhcC
Q 034584 41 QFKPEEIAAIMKDFE 55 (90)
Q Consensus 41 ~~~~~E~~~l~~~f~ 55 (90)
+.+++|+..|+..|.
T Consensus 10 nPt~eElAAL~aVla 24 (62)
T PF13822_consen 10 NPTDEELAALTAVLA 24 (62)
T ss_pred CCCHHHHHHHHHHHH
Confidence 568999999998874
No 43
>PF05228 CHASE4: CHASE4 domain; InterPro: IPR007892 CHASE4 is an extracellular sensory domain, which is present in various classes of transmembrane receptors that are upstream of signal transduction pathways in prokaryotes. Specifically, CHASE4 domains are found in histidine kinases in archaea and in predicted diguanylate cyclases/phosphodiesterases in bacteria. Environmental factors that are recognised by CHASE4 domains are not known at this time [].
Probab=25.25 E-value=1.9e+02 Score=18.33 Aligned_cols=71 Identities=18% Similarity=0.395 Sum_probs=39.6
Q ss_pred hhhhhhccccC-CCCccceEEEEecCCC-EEEecCCCC------CCCHHHHHHHHHhcC---CCCCCCccceEE-cCEEE
Q 034584 5 TYVDDHLMCDI-DGHHLTSAAIVGHDGS-VWAQSSNFP------QFKPEEIAAIMKDFE---EPGSLAPTGLHL-GGTKY 72 (90)
Q Consensus 5 ~yvd~~Li~~~-~t~~v~~aaI~g~dG~-vwA~s~~f~------~~~~~E~~~l~~~f~---d~~~~~~~Gi~l-~G~KY 72 (90)
+|+++++.... .+-.++..+|++.+|. +|+.+.++. .--+.++..+++-.. ........|+.. +|.-|
T Consensus 34 ~~~~~N~~~~~~~~~~~d~~~~~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 113 (161)
T PF05228_consen 34 DWIDENLGPELFENFGLDLIFILDPDGRVLYSSSKGYDFEPGSFDPIPPSLSQLISDLRALSPSNPSSASGLVRIDGGPA 113 (161)
T ss_pred HHHHHhcChhhhhhcCccEEEEEcCCCCEEEEeccCcccCccccccccHHHHHHHHHHHhhccccCCceEEEEEECCeEE
Confidence 45654443211 2668999999999996 686665542 112345555555332 122234566554 66666
Q ss_pred EEE
Q 034584 73 MVI 75 (90)
Q Consensus 73 ~~l 75 (90)
++.
T Consensus 114 lva 116 (161)
T PF05228_consen 114 LVA 116 (161)
T ss_pred EEE
Confidence 654
No 44
>PRK06714 S-adenosylhomocysteine nucleosidase; Validated
Probab=24.59 E-value=2.6e+02 Score=19.85 Aligned_cols=42 Identities=5% Similarity=-0.092 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCceEEEecC
Q 034584 42 FKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGAVIRGKKT 88 (90)
Q Consensus 42 ~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~~iygkkg 88 (90)
..|+|+..|...+.++. -..++|.+|..-..++.++++...|
T Consensus 9 Am~~E~~~l~~~l~~~~-----~~~~~~~~~~~g~~~~~~vv~~~sG 50 (236)
T PRK06714 9 AWEPELTYLHQSYPSER-----IEKRAAWEFHFHTINDLEIISVITG 50 (236)
T ss_pred eCHHHHHHHHHhccccc-----eEEEcCeEEEEEEECCEEEEEEeCC
Confidence 47899999999887653 3466777777666553556665544
No 45
>PF14199 DUF4317: Domain of unknown function (DUF4317)
Probab=24.51 E-value=78 Score=24.56 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=14.8
Q ss_pred ceEEcCEEEEEEEeCCCce
Q 034584 64 GLHLGGTKYMVIQGEPGAV 82 (90)
Q Consensus 64 Gi~l~G~KY~~lr~d~~~~ 82 (90)
-..++|+||+++..| +.+
T Consensus 348 t~~idGrkcLvI~id-e~~ 365 (371)
T PF14199_consen 348 TRVIDGRKCLVIPID-EDV 365 (371)
T ss_pred EEEECCEEEEEEEcc-CCc
Confidence 478999999999998 543
No 46
>PRK04210 phosphoenolpyruvate carboxykinase; Provisional
Probab=24.24 E-value=26 Score=28.91 Aligned_cols=34 Identities=15% Similarity=0.421 Sum_probs=29.4
Q ss_pred CCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEE
Q 034584 39 FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYM 73 (90)
Q Consensus 39 f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~ 73 (90)
| .+...+...|...++||.-+.-++|.|+|++.-
T Consensus 384 F-t~p~~q~p~idp~wedP~GVpIsaiiFGGRr~~ 417 (601)
T PRK04210 384 F-TVPASQCPNLDPEWEDPAGVPISAIIFGGRRSD 417 (601)
T ss_pred e-eccHHHCCcCCccccCCCCCEEEEEEECCcCCC
Confidence 7 777888888888899999888899999998754
No 47
>PF05123 S_layer_N: S-layer like family, N-terminal region ; InterPro: IPR022650 This entry represents the N-terminal domain of archael S-layer proteins. Members of this family are found in (for example) Pyrococcus horikoshii (split into two tandem reading frames), Methanocaldococcus jannaschii (Methanococcus jannaschii), and related species. Some local similarity can be found to other S-layer protein families. This entry is found in association with PF05124 from PFAM
Probab=23.84 E-value=91 Score=23.45 Aligned_cols=25 Identities=16% Similarity=0.371 Sum_probs=19.0
Q ss_pred ccceEEcCEEEEEEEeC--CCceEEEe
Q 034584 62 PTGLHLGGTKYMVIQGE--PGAVIRGK 86 (90)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d--~~~~iygk 86 (90)
..-|.|-|++|.++..+ ++...+||
T Consensus 241 G~~ipfLG~ey~iv~id~d~d~i~lG~ 267 (290)
T PF05123_consen 241 GMRIPFLGEEYVIVKIDTDDDIIYLGK 267 (290)
T ss_pred CceeeecCceEEEEEecCCCCEEEecc
Confidence 34688999999999876 35566676
No 48
>cd00506 PseudoU_synth_TruB_like PseudoU_synth_TruB: Pseudouridine synthase, TruB family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruB, Saccharomyces cerevisiae Pus4, M. tuberculosis TruB, S. cerevisiae Cbf5 and human dyskerin. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E. coli TruB, M. tuberculosis TruB and S. cerevisiae Pus4, make psi55 in the T loop of tRNAs. Pus4 catalyses the formation of psi55 in both cytoplasmic and mitochondrial tRNAs. Psi55 is almost universally conserved. S. cerevisiae Cbf5 and human dyskerin are nucleolar proteins that, with the help of guide RNAs, make the hundreds of psueudouridnes present in rRNA and small nuclear RNAs (snRNAs). Cbf5/Dyskerin is the catalytic subunit of eukaryotic box H/ACA small nucleolar ribonucleoprotein (snoRNP) particles. Mutations in human dysker
Probab=23.62 E-value=1.6e+02 Score=20.88 Aligned_cols=44 Identities=9% Similarity=0.126 Sum_probs=30.1
Q ss_pred cCCCEEEecCCCCCCCHHHHHHHHHhcCCC---CCCCccceEEcCEEE
Q 034584 28 HDGSVWAQSSNFPQFKPEEIAAIMKDFEEP---GSLAPTGLHLGGTKY 72 (90)
Q Consensus 28 ~dG~vwA~s~~f~~~~~~E~~~l~~~f~d~---~~~~~~Gi~l~G~KY 72 (90)
.+|.+-..++-- .++.+++..+++.|... .+-.-+.+.++|++-
T Consensus 79 ~~G~v~~~~~~~-~it~e~l~~~l~~f~G~i~Q~pP~ySAvKv~G~ra 125 (210)
T cd00506 79 ATGQVIEETPYD-HITHEQLERALETLTGDIQQVPPLYSAVKRQGQRA 125 (210)
T ss_pred CCCCEEEEeCCC-CCCHHHHHHHHHHCCCeEEEeCCchheEEECCHhH
Confidence 357777665433 68999999999998643 112347888888764
No 49
>COG2152 Predicted glycosylase [Carbohydrate transport and metabolism]
Probab=23.59 E-value=1.6e+02 Score=22.53 Aligned_cols=53 Identities=25% Similarity=0.392 Sum_probs=39.6
Q ss_pred ceEEEEecCC--CEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEE
Q 034584 21 TSAAIVGHDG--SVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQ 76 (90)
Q Consensus 21 ~~aaI~g~dG--~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr 76 (90)
-.||++++++ .+-+.|+.+ -+.|+|.=....-+.+. +++.|+.+-|-+..+.-
T Consensus 234 ~GaALlDledp~kvl~rS~~~-IleP~~~yE~~Gdv~~V--VF~CG~v~~~~~l~iyY 288 (314)
T COG2152 234 LGAALLDLEDPTKVLARSPEY-ILEPEELYERYGDVPNV--VFPCGAVLLGDELLIYY 288 (314)
T ss_pred eeeEEEcCCCCcEEEecCCcc-ccCccchhhhcCCcCcE--EeecceEEECCEEEEEe
Confidence 3689999876 488999998 88998877666544333 67899988887766544
No 50
>cd09232 Snurportin-1_C C-terminal m3G cap-binding domain of nuclear import adaptor snurportin-1. Snurportin-1 (SPN1 or SNUPN) is a nuclear import adaptor for m3G-capped spliceosomal U small nucleoproteins (snRNPs), which are assembled in the cytoplasm. After capping and assembly, the U snRNPs are transported into the nucleus by SPN1 and importin beta; SPN1 is then returned to the cytoplasm by exportin 1 (CRM1), which also transports the non-capped U snRNPs. The U snRNPs are essential elements of the spliceosome, which catalyzes the excision of introns and the ligation of exons to form a mature mRNA. SPN1 contains two domains, an N-terminal importin beta-binding (IBB) domain and a C-terminal m3G cap-binding domain.
Probab=22.96 E-value=98 Score=21.46 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=17.4
Q ss_pred EEcCEEEEEEEeCCCceEEEecCC
Q 034584 66 HLGGTKYMVIQGEPGAVIRGKKTF 89 (90)
Q Consensus 66 ~l~G~KY~~lr~d~~~~iygkkg~ 89 (90)
.--|++|+++-....-.+|-|.|.
T Consensus 28 ~P~G~R~lvv~~~g~t~~~~r~g~ 51 (186)
T cd09232 28 CPVGKRCLVVASKGKTVARSKNGR 51 (186)
T ss_pred CcCceEEEEEEeCCEEEEEeCCCC
Confidence 346999999998734457777764
No 51
>cd03530 Rieske_NirD_small_Bacillus Small subunit of nitrite reductase (NirD) family, Rieske domain; composed of proteins similar to the Bacillus subtilis small subunit of assimilatory nitrite reductase containing a Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. Assimilatory nitrate and nitrite reductases convert nitrate through nitrite to ammonium.
Probab=22.71 E-value=1.6e+02 Score=17.36 Aligned_cols=24 Identities=13% Similarity=0.191 Sum_probs=18.2
Q ss_pred ccceEEcCEEEEEEEeCCCceEEEe
Q 034584 62 PTGLHLGGTKYMVIQGEPGAVIRGK 86 (90)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d~~~~iygk 86 (90)
...+.++|++.++.|.+ +.-+|+-
T Consensus 15 ~~~~~~~g~~i~l~r~~-~g~~~A~ 38 (98)
T cd03530 15 ARKVQTGGGEIAVFRTA-DDEVFAL 38 (98)
T ss_pred cEEEEECCEEEEEEEeC-CCCEEEE
Confidence 34688999999999987 4456653
No 52
>KOG4614 consensus Inner membrane protein required for assembly of the F0 sector of ATP synthase [Posttranslational modification, protein turnover, chaperones]
Probab=22.45 E-value=1.9e+02 Score=21.54 Aligned_cols=30 Identities=17% Similarity=0.356 Sum_probs=21.4
Q ss_pred eEEEEecCCC-EEEecCCCCCCCHHHHHHHHHhc
Q 034584 22 SAAIVGHDGS-VWAQSSNFPQFKPEEIAAIMKDF 54 (90)
Q Consensus 22 ~aaI~g~dG~-vwA~s~~f~~~~~~E~~~l~~~f 54 (90)
-.-+++..|. .|+.. -..||+|+..|.++.
T Consensus 250 yV~L~D~s~kIRW~g~---G~aTp~Eve~L~~~~ 280 (287)
T KOG4614|consen 250 YVLLLDKSGKIRWQGF---GTATPEEVEQLLSCT 280 (287)
T ss_pred EEEEEccCceEEEeec---CCCCHHHHHHHHHHH
Confidence 3456777776 59854 456999999988763
No 53
>PF14827 Cache_3: Sensory domain of two-component sensor kinase; PDB: 1OJG_A 3BY8_A 1P0Z_I 2V9A_A 2J80_B.
Probab=21.92 E-value=57 Score=20.22 Aligned_cols=29 Identities=24% Similarity=0.345 Sum_probs=20.8
Q ss_pred hhhhhhhccccCCCCccceEEEEecCCCEEEec
Q 034584 4 QTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQS 36 (90)
Q Consensus 4 q~yvd~~Li~~~~t~~v~~aaI~g~dG~vwA~s 36 (90)
|.+++ .+.. ...++-..|.+.+|.+++.+
T Consensus 27 q~~~~-~~~~---~~~~~~i~v~D~~g~~l~~s 55 (116)
T PF14827_consen 27 QALLE-QLRK---ESDIDYIVVTDRDGIVLAHS 55 (116)
T ss_dssp CCHHH-HHHH---HCT-SEEEEECTTSBECE-S
T ss_pred HHHHH-HHHh---hcCCeEEEEEcCCCCEEEcC
Confidence 44555 5555 45888999999999999987
No 54
>PF08495 FIST: FIST N domain; InterPro: IPR013702 The FIST N domain is a novel sensory domain, which is present in signal transduction proteins from Bacteria, Archaea and Eukarya. Chromosomal proximity of FIST-encoding genes to those coding for proteins involved in amino acid metabolism and transport suggest that FIST domains bind small ligands, such as amino acids [].
Probab=21.60 E-value=1.1e+02 Score=20.19 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=22.0
Q ss_pred CccceEEcCEEEEEEEeCCCceEEEecC
Q 034584 61 APTGLHLGGTKYMVIQGEPGAVIRGKKT 88 (90)
Q Consensus 61 ~~~Gi~l~G~KY~~lr~d~~~~iygkkg 88 (90)
..+|..--|+++.+++++ ++.||--.|
T Consensus 170 ~~~g~~p~g~~~~VT~a~-~~~I~eld~ 196 (198)
T PF08495_consen 170 VSHGWEPIGKPMTVTKAE-GNIIYELDG 196 (198)
T ss_pred EecCeEeCCCCEEEEEec-CCEEEEECC
Confidence 467888889999999998 999985443
No 55
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=21.04 E-value=1.1e+02 Score=14.44 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=9.2
Q ss_pred ceEEEEecCCCEEEe
Q 034584 21 TSAAIVGHDGSVWAQ 35 (90)
Q Consensus 21 ~~aaI~g~dG~vwA~ 35 (90)
.+.+++..||.+|+-
T Consensus 9 ~ht~al~~~g~v~~w 23 (30)
T PF13540_consen 9 YHTCALTSDGEVYCW 23 (30)
T ss_dssp SEEEEEE-TTEEEEE
T ss_pred CEEEEEEcCCCEEEE
Confidence 345666679988664
No 56
>COG1582 FlgEa Uncharacterized protein, possibly involved in motility [Cell motility and secretion]
Probab=20.61 E-value=68 Score=18.94 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=9.7
Q ss_pred eEEcCEEEEEEEeC
Q 034584 65 LHLGGTKYMVIQGE 78 (90)
Q Consensus 65 i~l~G~KY~~lr~d 78 (90)
--++|+||++-..-
T Consensus 31 tLinGkkyvVkEsv 44 (67)
T COG1582 31 TLINGKKYVVKESV 44 (67)
T ss_pred EEEcCcEEEEcccH
Confidence 34789999876543
No 57
>PRK11649 putative peptidase; Provisional
Probab=20.37 E-value=72 Score=25.06 Aligned_cols=28 Identities=29% Similarity=0.382 Sum_probs=19.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHHHhcCCC
Q 034584 29 DGSVWAQSSNFPQFKPEEIAAIMKDFEEP 57 (90)
Q Consensus 29 dG~vwA~s~~f~~~~~~E~~~l~~~f~d~ 57 (90)
+++.+++...- .+++.++..|+++|...
T Consensus 192 ~~Sl~~sa~~a-gl~~~~i~~~~~~~~~~ 219 (439)
T PRK11649 192 GGSFVASAKNA-GLTSAEISAVIKALQWQ 219 (439)
T ss_pred eccHHHHHHHc-CCCHHHHHHHHHHhccC
Confidence 45555544334 67999999999999754
No 58
>PF12098 DUF3574: Protein of unknown function (DUF3574); InterPro: IPR021957 This family of proteins is functionally uncharacterised. This protein is found in bacteria and viruses. Proteins in this family are typically between 144 to 163 amino acids in length. This protein has a conserved TPRF sequence motif.
Probab=20.11 E-value=1.4e+02 Score=18.97 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=20.0
Q ss_pred CCCHHHHHHHHHhcCCCCCCCccceEEcC
Q 034584 41 QFKPEEIAAIMKDFEEPGSLAPTGLHLGG 69 (90)
Q Consensus 41 ~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G 69 (90)
.+|..|.+.+++ +.-.+.++.|+++-.
T Consensus 16 ~Vs~~ew~~Fld--~~VTPRFpdGlTv~D 42 (104)
T PF12098_consen 16 AVSEAEWQAFLD--DEVTPRFPDGLTVLD 42 (104)
T ss_pred cCCHHHHHHHHh--CeeccCCCCCceEEe
Confidence 789999999998 544455777877643
Done!