Query 034584
Match_columns 90
No_of_seqs 104 out of 398
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 06:42:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034584.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034584hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d9y_A Profilin; yeast, actin- 100.0 6.7E-37 2.3E-41 200.4 8.0 85 1-90 1-86 (127)
2 3nul_A Profilin I; cytoskeleto 100.0 7.8E-35 2.7E-39 191.4 10.6 88 2-90 1-89 (130)
3 1acf_A Profilin I; protein bin 100.0 3.8E-34 1.3E-38 186.9 7.3 84 2-90 1-84 (125)
4 1ypr_A Profilin; actin-binding 100.0 4.8E-34 1.6E-38 186.6 7.7 83 2-90 1-84 (125)
5 2v8f_A Profilin-2, profilin II 100.0 6.6E-32 2.2E-36 179.6 7.8 84 1-90 1-95 (140)
6 3nec_A Profilin, inflammatory 100.0 1.4E-30 4.9E-35 177.4 4.4 84 1-89 4-121 (166)
7 2jkg_A Profilin; proline-rich 100.0 1.3E-30 4.3E-35 178.9 4.0 84 1-89 5-126 (179)
8 2pbd_P Profilin-1, profilin I; 100.0 3.5E-29 1.2E-33 166.2 8.2 83 2-90 1-94 (139)
9 3leq_A Uncharacterized protein 84.0 1.9 6.4E-05 27.0 4.6 62 17-78 16-77 (126)
10 1j3w_A Giding PROTEIN-MGLB; gl 57.9 3.8 0.00013 26.8 1.3 38 10-52 22-64 (163)
11 1vet_B P14, late endosomal/lys 51.7 37 0.0013 20.9 5.2 37 17-54 16-52 (125)
12 1p3h_A 10 kDa chaperonin; beta 38.7 19 0.00063 21.9 2.1 17 62-78 75-91 (99)
13 1pcq_O Groes protein; chaperon 38.4 19 0.00065 21.7 2.1 17 62-78 73-89 (97)
14 3nx6_A 10KDA chaperonin; bacte 37.4 31 0.0011 20.7 2.9 17 62-78 72-88 (95)
15 1v74_A Colicin D; colicin D - 35.2 10 0.00035 23.6 0.5 23 21-47 74-96 (107)
16 1we3_O CPN10(groes); chaperoni 32.6 17 0.00058 22.1 1.2 17 62-78 77-93 (100)
17 3kye_A Roadblock/LC7 domain, R 29.1 43 0.0015 21.7 2.8 61 17-78 38-109 (150)
18 2d0s_A Cytochrome C, cytochrom 28.9 50 0.0017 17.6 2.7 20 37-56 58-77 (79)
19 2k49_A UPF0339 protein SO_3888 27.8 1.1E+02 0.0038 18.9 5.9 58 27-87 21-81 (118)
20 2lna_A AFG3-like protein 2; st 27.6 43 0.0015 19.9 2.4 23 1-27 18-40 (99)
21 2lqc_B Voltage-dependent L-typ 33.4 13 0.00045 17.1 0.0 8 1-8 6-13 (26)
22 1zgh_A Methionyl-tRNA formyltr 26.3 1.7E+02 0.0057 20.4 6.4 46 38-86 203-250 (260)
23 2d30_A Cytidine deaminase; pur 26.2 82 0.0028 19.9 3.7 55 1-57 10-75 (141)
24 1ayg_A Cytochrome C-552; elect 25.8 49 0.0017 17.7 2.3 18 37-55 60-77 (80)
25 1ik9_C DNA ligase IV; DNA END 24.5 55 0.0019 16.1 2.1 15 41-55 21-35 (37)
26 4gac_A Alcohol dehydrogenase [ 24.1 1.3E+02 0.0044 20.7 4.7 36 36-73 275-310 (324)
27 2exv_A Cytochrome C-551; alpha 23.8 57 0.0019 17.3 2.3 18 37-55 62-79 (82)
28 2l4d_A SCO1/SENC family protei 22.0 62 0.0021 18.1 2.3 18 37-55 77-94 (110)
29 1cch_A Cytochrome C551; electr 21.4 69 0.0023 16.9 2.4 18 37-55 62-79 (82)
30 4hw6_A Hypothetical protein, I 21.1 1.1E+02 0.0038 22.1 4.0 25 61-86 48-72 (433)
31 3kcm_A Thioredoxin family prot 20.9 1.1E+02 0.0039 17.7 3.5 39 19-57 106-144 (154)
32 1nvp_C Transcription initiatio 20.3 86 0.0029 18.1 2.6 17 62-78 54-71 (76)
No 1
>3d9y_A Profilin; yeast, actin-binding, cytoskeleton, protein; 1.65A {Schizosaccharomyces pombe} SCOP: d.110.1.0 PDB: 3dav_A
Probab=100.00 E-value=6.7e-37 Score=200.44 Aligned_cols=85 Identities=45% Similarity=0.772 Sum_probs=81.2
Q ss_pred CchhhhhhhhccccCCCCccceEEEEecCC-CEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCC
Q 034584 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEP 79 (90)
Q Consensus 1 MSWq~yvd~~Li~~~~t~~v~~aaI~g~dG-~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~ 79 (90)
||||+|||++|++ +++|++|||+|+|| ++||+|++| +++|+|++.|+++|+||+.++++||+|+|+||+++|+|
T Consensus 1 MSWq~Yvd~~L~~---~~~~~~aAI~g~dG~svwA~s~gf-~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~vir~d- 75 (127)
T 3d9y_A 1 MSWQAYVDTSLLG---TGKIDRAAIVSRAGDSVWAASAGF-NLSPQEIQGLAAGFQDPPSMFGTGIILAGQKYITIRAE- 75 (127)
T ss_dssp -CHHHHHHTTTGG---GSSCCEEEEEETTSSCEEEECTTC-CCCHHHHHHHHHHHHSTTHHHHHCEEETTEEEEEEEEC-
T ss_pred CCHHHHHHHhhcc---cCceeeEEEEeCCCCeEEEeCCCC-ccCHHHHHHHHHHhcCcchhhcCCEEEcCeEEEEEEeC-
Confidence 9999999999999 99999999999999 799999999 99999999999999999988899999999999999999
Q ss_pred CceEEEecCCC
Q 034584 80 GAVIRGKKTFE 90 (90)
Q Consensus 80 ~~~iygkkg~~ 90 (90)
+++||||||.+
T Consensus 76 ~~~i~~kkg~~ 86 (127)
T 3d9y_A 76 GRSIYGKLQKE 86 (127)
T ss_dssp SSEEEEEETTE
T ss_pred cceEEEEcCCc
Confidence 99999999864
No 2
>3nul_A Profilin I; cytoskeleton, actin binding protein; HET: MSE; 1.60A {Arabidopsis thaliana} SCOP: d.110.1.1 PDB: 1a0k_A 1cqa_A 1g5u_A
Probab=100.00 E-value=7.8e-35 Score=191.44 Aligned_cols=88 Identities=76% Similarity=1.243 Sum_probs=82.7
Q ss_pred chhhhhhhhccccCCCC-ccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCC
Q 034584 2 SWQTYVDDHLMCDIDGH-HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPG 80 (90)
Q Consensus 2 SWq~yvd~~Li~~~~t~-~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~ 80 (90)
|||+|||++|+++. +| +|++|||+|+||++||+|++|++++|+|++.|+++|+||+.++++||+|+|+||+++|+|++
T Consensus 1 SWq~YVd~~L~~~~-~g~~~~~aAIig~dGsvWA~s~gf~~~~p~E~~~i~~~f~d~~~~~~~Gl~l~G~Ky~~ir~d~~ 79 (130)
T 3nul_A 1 SWQSYVDDHLMCDV-EGNHLTAAAILGQDGSVWAQSAKFPQLKPQEIDGIKKDFEEPGFLAPTGLFLGGEKYMVIQGEQG 79 (130)
T ss_dssp CHHHHHHHTTSCCB-TTBCCSEEEEEETTSCEEEECTTCCCCCHHHHHHHHHHHHSTTSSTTTCEEETTEEEEEEEEETT
T ss_pred CHHHHHHhhhcccc-cCCcEeeEEEEeCCCCEEEcCCCcccCCHHHHHHHHHhccCchhhccCCEEECCeEEEEEEeCCC
Confidence 89999999999865 55 99999999999999999999999999999999999999999999999999999999999878
Q ss_pred ceEEEecCCC
Q 034584 81 AVIRGKKTFE 90 (90)
Q Consensus 81 ~~iygkkg~~ 90 (90)
++||||||.+
T Consensus 80 ~~i~~kkg~~ 89 (130)
T 3nul_A 80 AVIRGKKGPG 89 (130)
T ss_dssp TEEEEEETTE
T ss_pred cEEEEecCCC
Confidence 8999999863
No 3
>1acf_A Profilin I; protein binding, actin-binding protein, contractIle protein; 2.00A {Acanthamoeba castellanii} SCOP: d.110.1.1 PDB: 1prq_A 2prf_A 1f2k_A 2acg_A
Probab=100.00 E-value=3.8e-34 Score=186.91 Aligned_cols=84 Identities=35% Similarity=0.652 Sum_probs=80.9
Q ss_pred chhhhhhhhccccCCCCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCCc
Q 034584 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPGA 81 (90)
Q Consensus 2 SWq~yvd~~Li~~~~t~~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~~ 81 (90)
|||+|||++|++ +|++++|||+|+||++||+|++| +++|+|++.|+++|+||..++++||+|+|+||+++|.| ++
T Consensus 1 SWq~yvd~~L~~---~g~~~~aAIig~dGsvwA~s~~f-~~~~~E~~~i~~~f~~~~~~~~~Gi~l~G~KY~~i~~d-~~ 75 (125)
T 1acf_A 1 SWQTYVDTNLVG---TGAVTQAAILGLDGNTWATSAGF-AVTPAQGTTLAGAFNNADAIRAGGFDLAGVHYVTLRAD-DR 75 (125)
T ss_dssp CHHHHHHTTTGG---GTSCSEEEEEETTSCEEEECTTC-CCCHHHHHHHHHHHHCCHHHHHHCEEETTEEEEEEEES-SS
T ss_pred ChHHHHHhhhhh---CCCcceEEEEcCCCCEEEecCCC-ccCHHHHHHHHHHhcCcchhhcCCeEECCEEEEEEEec-Cc
Confidence 899999988999 89999999999999999999999 99999999999999999888899999999999999999 99
Q ss_pred eEEEecCCC
Q 034584 82 VIRGKKTFE 90 (90)
Q Consensus 82 ~iygkkg~~ 90 (90)
+||||||.+
T Consensus 76 ~i~~kk~~~ 84 (125)
T 1acf_A 76 SIYGKKGSS 84 (125)
T ss_dssp EEEEEETTE
T ss_pred EEEeecCCC
Confidence 999999863
No 4
>1ypr_A Profilin; actin-binding protein, cytoskeleton; 2.30A {Saccharomyces cerevisiae} SCOP: d.110.1.1 PDB: 1k0k_A
Probab=100.00 E-value=4.8e-34 Score=186.61 Aligned_cols=83 Identities=35% Similarity=0.754 Sum_probs=79.8
Q ss_pred chhhhhhhhccccCCCCccceEEEEecCC-CEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeCCC
Q 034584 2 SWQTYVDDHLMCDIDGHHLTSAAIVGHDG-SVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGEPG 80 (90)
Q Consensus 2 SWq~yvd~~Li~~~~t~~v~~aaI~g~dG-~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~ 80 (90)
|||+|||+ |++ +|++++|||+|+|| ++||+|++| +++|+|++.|+++|+||+.++++||+|+|+||+++|+| +
T Consensus 1 SWq~yvd~-L~~---~g~~~~aAI~g~DG~svwA~s~~f-~~~~~E~~~i~~~f~~~~~~~~~Gl~l~G~KY~~i~~d-~ 74 (125)
T 1ypr_A 1 SWQAYTDN-LIG---TGKVDKAVIYSRAGDAVWATSGGL-SLQPNEIGEIVQGFDNPAGLQSNGLHIQGQKFMLLRAD-D 74 (125)
T ss_dssp CHHHHHHH-HHH---TSSCSEEEEEETTSCCEEEEESCC-CCCHHHHHHHHHHTTCTHHHHHHCEEETTEEEEEEEEC-S
T ss_pred ChHHHHHH-Hhc---CCCccEEEEEeCCCCcEEEECCCC-ccCHHHHHHHHHhccCcchhccCCeEECCEEEEEEecC-C
Confidence 89999996 999 99999999999999 999999999 99999999999999999888899999999999999999 9
Q ss_pred ceEEEecCCC
Q 034584 81 AVIRGKKTFE 90 (90)
Q Consensus 81 ~~iygkkg~~ 90 (90)
++||||||++
T Consensus 75 ~~i~~kk~~~ 84 (125)
T 1ypr_A 75 RSIYGRHDAE 84 (125)
T ss_dssp SEEEEEETTE
T ss_pred cEEEEecCCc
Confidence 9999999863
No 5
>2v8f_A Profilin-2, profilin IIA; alternative splicing, protein-binding, cytoplasm, acetylation, cytoskeleton, actin-binding; 1.1A {Mus musculus} PDB: 2v8c_A 2vk3_A* 1d1j_A*
Probab=99.97 E-value=6.6e-32 Score=179.62 Aligned_cols=84 Identities=38% Similarity=0.634 Sum_probs=78.3
Q ss_pred Cc-hhhhhhhhccccCCCCccceEEEEecCC--CEEEecCC--CCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEE
Q 034584 1 MS-WQTYVDDHLMCDIDGHHLTSAAIVGHDG--SVWAQSSN--FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVI 75 (90)
Q Consensus 1 MS-Wq~yvd~~Li~~~~t~~v~~aaI~g~dG--~vwA~s~~--f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~l 75 (90)
|| ||+|||+ |++ +++|++|||+|+|| ++||+|++ |++++|+|++.|+ + +||+.++++||+|+|+||+++
T Consensus 1 MS~Wq~yvd~-L~~---~g~v~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~-~-~d~~~~~~~Gl~l~G~Ky~~i 74 (140)
T 2v8f_A 1 MAGWQSYVDN-LMC---DGCCQEAAIVGYCDAKYVWAATAGGVFQSITPVEIDMIV-G-KDREGFFTNGLTLGAKKCSVI 74 (140)
T ss_dssp -CTTHHHHHH-HHT---TSCEEEEEEEECSSSCSEEEECTTSSGGGCCHHHHHHHH-S-SCSSHHHHHCEEETTEEEEEE
T ss_pred CchHHHHHHH-Hhc---cCCcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHH-c-CCccccccCCeEECCEEEEEE
Confidence 99 9999996 999 99999999999999 99999999 9889999999999 7 999888999999999999999
Q ss_pred Ee----CCCce--EEEecCCC
Q 034584 76 QG----EPGAV--IRGKKTFE 90 (90)
Q Consensus 76 r~----d~~~~--iygkkg~~ 90 (90)
|+ |++++ ||||||.+
T Consensus 75 r~~l~~d~~~~~di~~kk~~~ 95 (140)
T 2v8f_A 75 RDSLYVDGDCTMDIRTKSQGG 95 (140)
T ss_dssp EEETTSTTTCEEEEEECCCSS
T ss_pred ecccccCCCceEEEEEecCCC
Confidence 99 76788 99999864
No 6
>3nec_A Profilin, inflammatory profilin; actin-binding, actin-binding protein; HET: MSE; 1.70A {Toxoplasma gondii}
Probab=99.96 E-value=1.4e-30 Score=177.45 Aligned_cols=84 Identities=26% Similarity=0.453 Sum_probs=76.3
Q ss_pred Cc-hhhhhhhhccccCCCCccceEEEEe-cCCCEEEecCCC------------------------CCCCHHHHHHHHHhc
Q 034584 1 MS-WQTYVDDHLMCDIDGHHLTSAAIVG-HDGSVWAQSSNF------------------------PQFKPEEIAAIMKDF 54 (90)
Q Consensus 1 MS-Wq~yvd~~Li~~~~t~~v~~aaI~g-~dG~vwA~s~~f------------------------~~~~~~E~~~l~~~f 54 (90)
|| ||+|||++|++ +++|++|||+| +||++||+|++| ++++|+|+++|+++|
T Consensus 4 MS~Wq~YVd~~L~~---~g~v~~AAI~g~~DG~vWA~s~~~~~~w~~~~~~~y~~~v~~~~g~~~~~~~~~E~~~i~~~f 80 (166)
T 3nec_A 4 MSDWDPVVKEWLVD---TGYCCAGGIANAEDGVVFAAAADDDDGWSKLYKDDHEEDTIGEDGNACGKVSINEASTIKAAV 80 (166)
T ss_dssp -CCCHHHHHHHHTT---TSSCSEEEEEETTTCCEEEEEETTSCHHHHHCCCCEEEEEECTTSCEEEEEEECHHHHHHHHH
T ss_pred ccHHHHHHHHHhhc---cCceeEEEEEecCCCCEEeecCCCCcccccccccccccccccccccccccCCHHHHHHHHHHh
Confidence 99 99999999999 99999999999 799999999999 256999999999999
Q ss_pred CCCCCCCccceEEcCEEEEEEEeCCC--------ceEEEecCC
Q 034584 55 EEPGSLAPTGLHLGGTKYMVIQGEPG--------AVIRGKKTF 89 (90)
Q Consensus 55 ~d~~~~~~~Gi~l~G~KY~~lr~d~~--------~~iygkkg~ 89 (90)
++. ++++||+|+|+||+++|+|++ ++|||||++
T Consensus 81 ~~~--~~~~Gl~lgG~KY~~ir~d~~~~~~~~~~~~i~~kK~~ 121 (166)
T 3nec_A 81 DDG--SAPNGVWIGGQKYKVVRPEKGFEYNDCTFDITMCARSK 121 (166)
T ss_dssp HHS--CCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETT
T ss_pred hcC--CccCCeEEeCeEEEEEEecCCccccccceeEEEeccCC
Confidence 884 578999999999999999933 789999986
No 7
>2jkg_A Profilin; proline-rich ligand, protein-binding, malaria, cytoskeleton; 1.89A {Plasmodium falciparum} PDB: 2jkf_A
Probab=99.96 E-value=1.3e-30 Score=178.94 Aligned_cols=84 Identities=32% Similarity=0.563 Sum_probs=78.6
Q ss_pred CchhhhhhhhccccCCCCccceEEEEec-CCCEEEecC------------------CCC-CC----------CHHHHHHH
Q 034584 1 MSWQTYVDDHLMCDIDGHHLTSAAIVGH-DGSVWAQSS------------------NFP-QF----------KPEEIAAI 50 (90)
Q Consensus 1 MSWq~yvd~~Li~~~~t~~v~~aaI~g~-dG~vwA~s~------------------~f~-~~----------~~~E~~~l 50 (90)
||||+|||++|++ ||+|++|||+|+ ||++||+|+ +|+ ++ +|+|+++|
T Consensus 5 mSWq~YVd~~Ll~---tG~v~~AaI~g~~DG~vwA~s~~~~e~~~~~~~w~~~~k~~f~~~v~~e~g~~~~~~~~E~~~I 81 (179)
T 2jkg_A 5 YSWDSYLNDRLLA---TNQVSGAGLASEEDGVVYACVAQGEESDPNFDKWSLFYKEDYDIEVEDENGTKTTKTINEGQTI 81 (179)
T ss_dssp CCHHHHHHHHTGG---GSSCSEEEEEETTTCCEEEEEESSCTTSTTCCGGGGTCCCCEEEEEECTTCCEEEEEECHHHHH
T ss_pred ccHHHHHHHhhhh---cCCEehheeecccCCCEEEecCccccccccccchhhhccCCchhhhccccCccccCCHHHHHHH
Confidence 9999999999999 999999999999 999999999 884 47 89999999
Q ss_pred HHhcCCCCCCCccceEEcCEEEEEEEeCCC--------ceEEEecCC
Q 034584 51 MKDFEEPGSLAPTGLHLGGTKYMVIQGEPG--------AVIRGKKTF 89 (90)
Q Consensus 51 ~~~f~d~~~~~~~Gi~l~G~KY~~lr~d~~--------~~iygkkg~ 89 (90)
+++|++ .++++||+|+|+||+++|.|++ ++||||||+
T Consensus 82 ~~~f~~--~~~~~Gv~lgG~KY~~i~~d~d~~~~~~~~~~i~gkKgk 126 (179)
T 2jkg_A 82 LVVFNE--GYAPDGVWLGGTKYQFINIERDLEFEGYNFDVATCAKLK 126 (179)
T ss_dssp HHHHHH--SCCTTCEEETTEEEEEEEEEEEEEETTEEEEEEEEEETT
T ss_pred HHHHhc--CCCCCCEEECCEEEEEEEecCCccccCcceeEEEEecCC
Confidence 999987 5789999999999999999977 899999986
No 8
>2pbd_P Profilin-1, profilin I; ternary complex, profilin, actin, poly-proline, loading poly-Pro site, GAB domain, structural protein; HET: HIC ATP; 1.50A {Homo sapiens} SCOP: d.110.1.1 PDB: 1fik_A 1cjf_A 1pfl_A 1fil_A* 2pav_P* 3chw_P* 1awi_A 1cf0_A* 1pne_A 1hlu_P 2btf_P* 3u4l_P* 3ub5_P*
Probab=99.96 E-value=3.5e-29 Score=166.16 Aligned_cols=83 Identities=35% Similarity=0.606 Sum_probs=77.5
Q ss_pred c-hhhhhhhhccccCCCCccceEEEEecCC--CEEEecCC--CCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEE
Q 034584 2 S-WQTYVDDHLMCDIDGHHLTSAAIVGHDG--SVWAQSSN--FPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQ 76 (90)
Q Consensus 2 S-Wq~yvd~~Li~~~~t~~v~~aaI~g~dG--~vwA~s~~--f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr 76 (90)
| ||+|||+ |++ +++|++|||+|+|| ++||+|++ |.+++|+|++.|+ + +||+.++++||+|+|+||+++|
T Consensus 1 s~Wq~Yvd~-L~~---~g~~~~AAIig~dG~~svWA~s~g~~f~~~~~~E~~~i~-~-~d~~~~~~~Gl~lgG~Ky~~ir 74 (139)
T 2pbd_P 1 AGWNAYIDN-LMA---DGTCQDAAIVGYKDSPSVWAAVPGKTFVNITPAEVGVLV-G-KDRSSFYVNGLTLGGQKCSVIR 74 (139)
T ss_dssp CCSHHHHHH-HHT---TSCEEEEEEEESSSSCEEEEECTTSSGGGCCHHHHHHHH-S-SCCSTHHHHCEEETTEEEEEEE
T ss_pred CchHHHHHH-Hhc---cCCcceEEEEecCCCccEEEECCCCCcccCCHHHHHHHH-c-cCcccccccCeEECCEEEEEEe
Confidence 5 9999996 999 89999999999999 99999999 9889999999999 6 8888889999999999999999
Q ss_pred e----CCCceE--EEecCCC
Q 034584 77 G----EPGAVI--RGKKTFE 90 (90)
Q Consensus 77 ~----d~~~~i--ygkkg~~ 90 (90)
+ |++++| |+||+.+
T Consensus 75 ~~~~~d~~~~id~~~kk~~~ 94 (139)
T 2pbd_P 75 DSLLQDGEFSMDLRTKSTGG 94 (139)
T ss_dssp EETTCTTTCEEEEEECCSTT
T ss_pred cccccCCCcEEeeeeccCCC
Confidence 9 767899 9999864
No 9
>3leq_A Uncharacterized protein CVNB5; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptomyces avermitilis}
Probab=84.00 E-value=1.9 Score=27.03 Aligned_cols=62 Identities=18% Similarity=0.210 Sum_probs=33.7
Q ss_pred CCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEEEEEeC
Q 034584 17 GHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYMVIQGE 78 (90)
Q Consensus 17 t~~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~~lr~d 78 (90)
+..+..|++++.||=+-+++.+.+...++-+..+...+-.-......=+..+..+-++++.+
T Consensus 16 v~gv~~avlvs~DGl~ia~~~~~~~~dae~lAA~~a~l~sl~~~~~~~~~~G~~~qv~ve~~ 77 (126)
T 3leq_A 16 VAEVDHAVVLSEDGLVVSKSTGFLRDDAERLAATASGLMSLSKGVSMDFRRGPVRQALIEMG 77 (126)
T ss_dssp CTTEEEEEEEETTSCEEEECTTSCHHHHHHHHHHHHHHHHC-------------CEEEEECS
T ss_pred CCCceEEEEEcCCCcEEEeeCCCCcccHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEeC
Confidence 56899999999999998987666112445555555544221111122234566677777777
No 10
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=57.86 E-value=3.8 Score=26.84 Aligned_cols=38 Identities=13% Similarity=0.178 Sum_probs=27.6
Q ss_pred hccccCCCCccceEEEEecCCCEEEe-----cCCCCCCCHHHHHHHHH
Q 034584 10 HLMCDIDGHHLTSAAIVGHDGSVWAQ-----SSNFPQFKPEEIAAIMK 52 (90)
Q Consensus 10 ~Li~~~~t~~v~~aaI~g~dG~vwA~-----s~~f~~~~~~E~~~l~~ 52 (90)
.|+. ...+..|+|++.||-+-++ +... . ..+-+.++..
T Consensus 22 ~L~~---v~Gv~~avlvs~DGl~ia~~~~~~~~~~-~-d~d~lAA~~A 64 (163)
T 1j3w_A 22 ETLR---ETGARYALLIDRKGFVLAHKEALWAPKP-P-PLDTLATLVA 64 (163)
T ss_dssp HHHH---HHCCSEEEEEETTSCEEEEEECTTSCCC-S-CHHHHHHHHH
T ss_pred HHhc---cCCceEEEEEcCCCCEEEeecccccCCC-C-cHHHHHHHHH
Confidence 4555 4479999999999998888 6666 5 6665555544
No 11
>1vet_B P14, late endosomal/lysosomal MP1 interacting protein; profilin, scaffold, adaptor, signaling protein/protein binding complex; 1.90A {Mus musculus} SCOP: d.110.7.1 PDB: 2zl1_B 1veu_B 1szv_A 1sko_B 3cpt_B
Probab=51.73 E-value=37 Score=20.91 Aligned_cols=37 Identities=22% Similarity=0.216 Sum_probs=28.5
Q ss_pred CCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhc
Q 034584 17 GHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDF 54 (90)
Q Consensus 17 t~~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~~f 54 (90)
+..+..+++++.||-+-|++..= ....+-+.++...+
T Consensus 16 ~~gv~~a~lvs~DGllia~s~~~-~~dae~laAias~~ 52 (125)
T 1vet_B 16 TGGVQSTLLLNNEGSLLAYSGYG-DTDARVTAAIASNI 52 (125)
T ss_dssp CTTEEEEEEECTTCCEEEEEECC-SSCHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCeEEecCCC-CccHHHHHHHHHHH
Confidence 66999999999999988877542 55777777776654
No 12
>1p3h_A 10 kDa chaperonin; beta barrel, acidic cluster, flexible loop, structural genomics, PSI, protein structure initiative; 2.80A {Mycobacterium tuberculosis} SCOP: b.35.1.1 PDB: 1hx5_A 1lep_A 1p82_A 1p83_A
Probab=38.72 E-value=19 Score=21.87 Aligned_cols=17 Identities=18% Similarity=0.573 Sum_probs=14.9
Q ss_pred ccceEEcCEEEEEEEeC
Q 034584 62 PTGLHLGGTKYMVIQGE 78 (90)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (90)
.+=+.++|++|+++|.+
T Consensus 75 Gtevk~dgeey~i~re~ 91 (99)
T 1p3h_A 75 GTEIKYNGEEYLILSAR 91 (99)
T ss_dssp CEEEEETTEEEEEEEGG
T ss_pred CeEEEECCEEEEEEEhH
Confidence 45599999999999987
No 13
>1pcq_O Groes protein; chaperone; HET: ADP; 2.81A {Escherichia coli} SCOP: b.35.1.1 PDB: 1gru_O 1aon_O* 1pf9_O* 1svt_O* 1sx4_O* 2c7c_O 2c7d_O
Probab=38.35 E-value=19 Score=21.74 Aligned_cols=17 Identities=0% Similarity=0.155 Sum_probs=14.8
Q ss_pred ccceEEcCEEEEEEEeC
Q 034584 62 PTGLHLGGTKYMVIQGE 78 (90)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (90)
.+=+.++|++|+++|.+
T Consensus 73 Gtevk~dgeey~i~re~ 89 (97)
T 1pcq_O 73 VKSEKIDNEEVLIMSES 89 (97)
T ss_dssp CEEEEETTEEEEEEEGG
T ss_pred CeEEEECCEEEEEEEhH
Confidence 45599999999999987
No 14
>3nx6_A 10KDA chaperonin; bacterial blight, XOO4289, groes, xanthomonas oryzae PV. ORY KACC10331, chaperone; 1.97A {Xanthomonas oryzae PV} SCOP: b.35.1.0
Probab=37.37 E-value=31 Score=20.71 Aligned_cols=17 Identities=18% Similarity=0.429 Sum_probs=14.8
Q ss_pred ccceEEcCEEEEEEEeC
Q 034584 62 PTGLHLGGTKYMVIQGE 78 (90)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (90)
.+=+.++|++|+++|.+
T Consensus 72 Gtevk~dg~ey~i~re~ 88 (95)
T 3nx6_A 72 GSSYKSEGVEYKVLRED 88 (95)
T ss_dssp SEEEEETTEEEEEEEGG
T ss_pred CeEEEECCEEEEEEEHH
Confidence 45689999999999987
No 15
>1v74_A Colicin D; colicin D - IMMD complex, cytotoxicity, transfer RNAse, protein-protein inhibition; HET: 1PE; 2.00A {Escherichia coli} SCOP: d.243.1.1 PDB: 1tfo_A 1tfk_A*
Probab=35.22 E-value=10 Score=23.56 Aligned_cols=23 Identities=13% Similarity=0.430 Sum_probs=17.4
Q ss_pred ceEEEEecCCCEEEecCCCCCCCHHHH
Q 034584 21 TSAAIVGHDGSVWAQSSNFPQFKPEEI 47 (90)
Q Consensus 21 ~~aaI~g~dG~vwA~s~~f~~~~~~E~ 47 (90)
..|+|++.+|+.|. +| .++|.+.
T Consensus 74 ~~~Viid~~g~Fvs---Gw-Kl~p~q~ 96 (107)
T 1v74_A 74 MNVVIIKSNGEFLS---GW-KINPDAD 96 (107)
T ss_dssp CEEEEECTTSCEEE---EE-ECCTTSH
T ss_pred CeEEEEcCCCCEEE---EE-EcCCCch
Confidence 47999999998865 57 7766544
No 16
>1we3_O CPN10(groes); chaperonin, chaperone, groel, HSP60, HSP10, folding, ADP, ATP; HET: ADP; 2.80A {Thermus thermophilus} SCOP: b.35.1.1 PDB: 1wf4_o* 1wnr_A
Probab=32.62 E-value=17 Score=22.09 Aligned_cols=17 Identities=18% Similarity=0.569 Sum_probs=14.8
Q ss_pred ccceEEcCEEEEEEEeC
Q 034584 62 PTGLHLGGTKYMVIQGE 78 (90)
Q Consensus 62 ~~Gi~l~G~KY~~lr~d 78 (90)
.+=+.++|++|+++|.+
T Consensus 77 Gtevk~dgeeyli~re~ 93 (100)
T 1we3_O 77 GTEIEIDGEEYVILSER 93 (100)
T ss_dssp SEEEECSSCEEEEECTT
T ss_pred CeEEEECCEEEEEEEhH
Confidence 45599999999999987
No 17
>3kye_A Roadblock/LC7 domain, ROBL_LC7; alpga-beta-alpha sandwich, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.15A {Streptomyces avermitilis}
Probab=29.10 E-value=43 Score=21.66 Aligned_cols=61 Identities=21% Similarity=0.265 Sum_probs=36.5
Q ss_pred CCccceEEEEecCCCEEEecCCCCCCCHHHHHHHHH-----------hcCCCCCCCccceEEcCEEEEEEEeC
Q 034584 17 GHHLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMK-----------DFEEPGSLAPTGLHLGGTKYMVIQGE 78 (90)
Q Consensus 17 t~~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~-----------~f~d~~~~~~~Gi~l~G~KY~~lr~d 78 (90)
+..|..|++++.||= -++|.+.+...++-+.++.. .|.+...+++.=|...+-..+++.+-
T Consensus 38 vpGV~~AvvvS~DGL-la~S~~l~~~dae~LAA~aSgl~SLa~~aa~~~~~~G~vrqv~VE~~~G~l~v~~aG 109 (150)
T 3kye_A 38 VPHTTSAVLLSCDGL-VKSVHGLDPDSADHMAALASGLYSLGRSAGIRFGDGGDVRQVVVELDSTLLFVSTAG 109 (150)
T ss_dssp STTEEEEEEEETTSC-EEEEESSCHHHHHHHHHHHHHHHHHHHHHHHHHSSSSCCCEEEEEESSEEEEEEEEE
T ss_pred CCCeeEEEEEcCCCC-EeecCCCCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCeEEEEEEeCCcEEEEEEcC
Confidence 568999999999998 77776662223344443333 23323334455555555555555555
No 18
>2d0s_A Cytochrome C, cytochrome C552; heme protein, electron transport; HET: HEC; 2.20A {Hydrogenophilus thermoluteolus}
Probab=28.95 E-value=50 Score=17.57 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=15.5
Q ss_pred CCCCCCCHHHHHHHHHhcCC
Q 034584 37 SNFPQFKPEEIAAIMKDFEE 56 (90)
Q Consensus 37 ~~f~~~~~~E~~~l~~~f~d 56 (90)
|.|..++++|++.|++-+..
T Consensus 58 p~~~~Ls~~ei~~l~~yl~~ 77 (79)
T 2d0s_A 58 PPHPQVAEADIEKIVRWVLT 77 (79)
T ss_dssp CCCTTSCHHHHHHHHHHHTT
T ss_pred CCCCCCCHHHHHHHHHHHHh
Confidence 44657899999999987653
No 19
>2k49_A UPF0339 protein SO_3888; solution structure, structural genomics, unknown functio protein structure initiative; NMR {Shewanella oneidensis} SCOP: d.348.1.1 d.348.1.1
Probab=27.85 E-value=1.1e+02 Score=18.87 Aligned_cols=58 Identities=12% Similarity=0.185 Sum_probs=35.7
Q ss_pred ecCCCEEEecCCCCCCCHHHHHHHHHhcC-C-C-CCCCccceEEcCEEEEEEEeCCCceEEEec
Q 034584 27 GHDGSVWAQSSNFPQFKPEEIAAIMKDFE-E-P-GSLAPTGLHLGGTKYMVIQGEPGAVIRGKK 87 (90)
Q Consensus 27 g~dG~vwA~s~~f~~~~~~E~~~l~~~f~-d-~-~~~~~~Gi~l~G~KY~~lr~d~~~~iygkk 87 (90)
..+|.+-++|.++ . +......=+..++ + + ...+.--..-+|+-|+.|++. ..-|.|+.
T Consensus 21 a~NgeiI~sSe~Y-~-sk~~a~~gI~sVk~na~~~~~fe~~~~~~gk~yF~Lka~-NgqvIg~S 81 (118)
T 2k49_A 21 AGNGEVILTSELY-T-GKSGAMNGIESVQTNSPIEARYAKEVAKNDKPYFNLKAA-NHQIIGTS 81 (118)
T ss_dssp CSSSCEEEECCCB-S-SHHHHHHHHHHHHHHTTCGGGEEEEEETTTEEEEEEECT-TCCEEEEB
T ss_pred ECCCCEEEECCCc-C-CHHHHHHHHHHHHHhCcccceEEEEEccCCCEEEEEEcC-CCcEEEEc
Confidence 3489999998888 4 4444443333332 1 1 122344566689999999998 55555653
No 20
>2lna_A AFG3-like protein 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, MPP, hydrolase; NMR {Homo sapiens}
Probab=27.63 E-value=43 Score=19.92 Aligned_cols=23 Identities=13% Similarity=0.541 Sum_probs=17.6
Q ss_pred CchhhhhhhhccccCCCCccceEEEEe
Q 034584 1 MSWQTYVDDHLMCDIDGHHLTSAAIVG 27 (90)
Q Consensus 1 MSWq~yvd~~Li~~~~t~~v~~aaI~g 27 (90)
+||+.|.. .++. .|.|++-.++.
T Consensus 18 Is~~eF~~-~~L~---kG~V~kI~V~n 40 (99)
T 2lna_A 18 ITWKDFVN-NYLS---KGVVDRLEVVN 40 (99)
T ss_dssp CCHHHHHH-HTGG---GTCEEEEEEET
T ss_pred cCHHHHHH-HHhh---CCCceEEEEEc
Confidence 48999996 4777 78999966654
No 21
>2lqc_B Voltage-dependent L-type calcium channel subunit; metal binding protein-transport protein complex; NMR {Homo sapiens}
Probab=33.36 E-value=13 Score=17.14 Aligned_cols=8 Identities=50% Similarity=1.170 Sum_probs=6.5
Q ss_pred Cchhhhhh
Q 034584 1 MSWQTYVD 8 (90)
Q Consensus 1 MSWq~yvd 8 (90)
.|||+-||
T Consensus 6 LSWQAAId 13 (26)
T 2lqc_B 6 LSWQAAID 13 (26)
Confidence 48998887
No 22
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=26.26 E-value=1.7e+02 Score=20.38 Aligned_cols=46 Identities=13% Similarity=0.120 Sum_probs=31.6
Q ss_pred CCCCCCHHHHHHHHHhcC-CCCCCCccceEEcCEEEEEEEeCC-CceEEEe
Q 034584 38 NFPQFKPEEIAAIMKDFE-EPGSLAPTGLHLGGTKYMVIQGEP-GAVIRGK 86 (90)
Q Consensus 38 ~f~~~~~~E~~~l~~~f~-d~~~~~~~Gi~l~G~KY~~lr~d~-~~~iygk 86 (90)
+| +-+.+|+..++.+|. +|-+ ..=..++|+++.+.++.. +.-|.++
T Consensus 203 dw-~~~a~~I~~~IRa~~~~p~P--gA~t~~~g~~~ki~~a~~~~~~~~~~ 250 (260)
T 1zgh_A 203 SP-DFDLEKIYDYIRMLDGEGYP--RAFIKYGKYRLEFSRASMKNGKIIAD 250 (260)
T ss_dssp CT-TSCHHHHHHHHHHTCSTTCC--CCEEEETTEEEEEEEEEEETTEEEEE
T ss_pred Cc-ccCHHHHHHHHHhhCCCCCC--cEEEEECCEEEEEEEEEEcCCeEEEE
Confidence 47 678999999999996 4522 122467999999988753 3344443
No 23
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=26.15 E-value=82 Score=19.93 Aligned_cols=55 Identities=20% Similarity=0.315 Sum_probs=33.8
Q ss_pred Cchhhhhhhhccc------cCCCCccceEEEEecCCCEEEecCCCC----CC-CHHHHHHHHHhcCCC
Q 034584 1 MSWQTYVDDHLMC------DIDGHHLTSAAIVGHDGSVWAQSSNFP----QF-KPEEIAAIMKDFEEP 57 (90)
Q Consensus 1 MSWq~yvd~~Li~------~~~t~~v~~aaI~g~dG~vwA~s~~f~----~~-~~~E~~~l~~~f~d~ 57 (90)
|.|+.+++..+-+ |+ ++.--.||+...||.++... |.- .+ .=.|...|.++....
T Consensus 10 ~~~~~L~~~A~~a~~~AyaPY-S~f~VGAAll~~dG~i~~G~-NvEnasy~~t~CAEr~Ai~~Avs~G 75 (141)
T 2d30_A 10 MNSKQLIQEAIEARKQAYVPY-SKFQVGAALLTQDGKVYRGC-NVENASYGLCNCAERTALFKAVSEG 75 (141)
T ss_dssp CCHHHHHHHHHHHHTTCBCTT-TCCCEEEEEEETTCCEEEEE-CBCCSSGGGCBCHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHhcCCCc-CCCcEEEEEEeCCCCEEEee-ccccCCCCcccCHHHHHHHHHHHCC
Confidence 8899998743222 22 34445688888999887643 211 11 226888888877543
No 24
>1ayg_A Cytochrome C-552; electron transport, porphyrin, ferrous iron; HET: HEC; NMR {Hydrogenobacter thermophilus} SCOP: a.3.1.1 PDB: 1ynr_A* 2ai5_A*
Probab=25.81 E-value=49 Score=17.68 Aligned_cols=18 Identities=6% Similarity=-0.073 Sum_probs=14.8
Q ss_pred CCCCCCCHHHHHHHHHhcC
Q 034584 37 SNFPQFKPEEIAAIMKDFE 55 (90)
Q Consensus 37 ~~f~~~~~~E~~~l~~~f~ 55 (90)
|.| .++++|++.|++-+.
T Consensus 60 p~~-~Lsd~ei~~l~~yl~ 77 (80)
T 1ayg_A 60 PPQ-NVTDAEAKQLAQWIL 77 (80)
T ss_dssp CCC-CCCHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHH
Confidence 567 899999999988653
No 25
>1ik9_C DNA ligase IV; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens}
Probab=24.50 E-value=55 Score=16.09 Aligned_cols=15 Identities=0% Similarity=0.202 Sum_probs=12.6
Q ss_pred CCCHHHHHHHHHhcC
Q 034584 41 QFKPEEIAAIMKDFE 55 (90)
Q Consensus 41 ~~~~~E~~~l~~~f~ 55 (90)
.++++|++.|+..++
T Consensus 21 d~t~~eLk~il~~m~ 35 (37)
T 1ik9_C 21 DTDLNQLKEVFSGIK 35 (37)
T ss_dssp CCCHHHHHHHHHTCC
T ss_pred cCCHHHHHHHHHHcc
Confidence 579999999998764
No 26
>4gac_A Alcohol dehydrogenase [NADP(+)]; TIM barrel, aldheyde reductase AKR1A4, SMAR1, oxidoreductase; HET: FLC; 1.64A {Mus musculus} PDB: 2alr_A 3h4g_A* 3cv7_A* 3fx4_A* 1ae4_A* 1cwn_A* 1hqt_A*
Probab=24.11 E-value=1.3e+02 Score=20.72 Aligned_cols=36 Identities=17% Similarity=0.212 Sum_probs=25.7
Q ss_pred cCCCCCCCHHHHHHHHHhcCCCCCCCccceEEcCEEEE
Q 034584 36 SSNFPQFKPEEIAAIMKDFEEPGSLAPTGLHLGGTKYM 73 (90)
Q Consensus 36 s~~f~~~~~~E~~~l~~~f~d~~~~~~~Gi~l~G~KY~ 73 (90)
+.+| .++++|++.|-++-++. ......+.+.|.+|-
T Consensus 275 a~~~-~Ls~ee~~~id~l~~~~-R~~~p~~~~~g~~~p 310 (324)
T 4gac_A 275 VFDF-TFSPEEMKQLDALNKNW-RYIVPMITVDGKRVP 310 (324)
T ss_dssp CSSC-CCCHHHHHHHHTTCCCC-CCCCCEEEETTEEEE
T ss_pred hCCC-CCCHHHHHHHhccCcCC-CccCCccccccccCc
Confidence 3468 89999999997654432 234557888888885
No 27
>2exv_A Cytochrome C-551; alpha helix, heme C, electron transport; HET: HEC; 1.86A {Pseudomonas aeruginosa} PDB: 2pac_A* 351c_A* 451c_A* 1dvv_A*
Probab=23.76 E-value=57 Score=17.30 Aligned_cols=18 Identities=11% Similarity=-0.016 Sum_probs=14.9
Q ss_pred CCCCCCCHHHHHHHHHhcC
Q 034584 37 SNFPQFKPEEIAAIMKDFE 55 (90)
Q Consensus 37 ~~f~~~~~~E~~~l~~~f~ 55 (90)
|.| .++++|+..|++-+.
T Consensus 62 p~~-~ls~~ei~~l~~yl~ 79 (82)
T 2exv_A 62 PPN-AVSDDEAQTLAKWVL 79 (82)
T ss_dssp CCC-CCCHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHH
Confidence 567 899999999998664
No 28
>2l4d_A SCO1/SENC family protein/cytochrome C; electron transfer, electron transport; HET: HEC; NMR {Pseudomonas putida}
Probab=21.98 E-value=62 Score=18.15 Aligned_cols=18 Identities=22% Similarity=0.481 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHhcC
Q 034584 37 SNFPQFKPEEIAAIMKDFE 55 (90)
Q Consensus 37 ~~f~~~~~~E~~~l~~~f~ 55 (90)
|.| .++++|+..|++-+.
T Consensus 77 p~~-~Ls~~ei~~l~~yl~ 94 (110)
T 2l4d_A 77 PNM-RLGDAEVSALISYLE 94 (110)
T ss_dssp CCC-CCCHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHH
Confidence 557 799999999988663
No 29
>1cch_A Cytochrome C551; electron transport; HET: HEM; NMR {Pseudomonas stutzeri} SCOP: a.3.1.1 PDB: 1fi3_A* 2i8f_A* 1cor_A*
Probab=21.39 E-value=69 Score=16.89 Aligned_cols=18 Identities=11% Similarity=-0.062 Sum_probs=14.7
Q ss_pred CCCCCCCHHHHHHHHHhcC
Q 034584 37 SNFPQFKPEEIAAIMKDFE 55 (90)
Q Consensus 37 ~~f~~~~~~E~~~l~~~f~ 55 (90)
|.| .++++|+..|++-+.
T Consensus 62 p~~-~ls~~ei~~l~~yl~ 79 (82)
T 1cch_A 62 PPN-PVTEEEAKILAEWVL 79 (82)
T ss_dssp CCC-SCCHHHHHHHHHHHH
T ss_pred CCC-CCCHHHHHHHHHHHH
Confidence 567 899999999988653
No 30
>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}
Probab=21.09 E-value=1.1e+02 Score=22.14 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=22.3
Q ss_pred CccceEEcCEEEEEEEeCCCceEEEe
Q 034584 61 APTGLHLGGTKYMVIQGEPGAVIRGK 86 (90)
Q Consensus 61 ~~~Gi~l~G~KY~~lr~d~~~~iygk 86 (90)
....++|+|++..++.+. +..||++
T Consensus 48 ~~~~v~~~~~~a~v~~~~-~~~i~~~ 72 (433)
T 4hw6_A 48 SKVKVTIGGYPAKVINVK-GESLLCI 72 (433)
T ss_dssp GGEEEEETTEEEEEEEEC-SSEEEEE
T ss_pred ceeEEEECCEEEEEEEeC-CCEEEEE
Confidence 456899999999999999 9999986
No 31
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=20.92 E-value=1.1e+02 Score=17.69 Aligned_cols=39 Identities=8% Similarity=0.184 Sum_probs=26.8
Q ss_pred ccceEEEEecCCCEEEecCCCCCCCHHHHHHHHHhcCCC
Q 034584 19 HLTSAAIVGHDGSVWAQSSNFPQFKPEEIAAIMKDFEEP 57 (90)
Q Consensus 19 ~v~~aaI~g~dG~vwA~s~~f~~~~~~E~~~l~~~f~d~ 57 (90)
.+-...|++.+|.+.....+....+.+++..+++.+...
T Consensus 106 ~~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~ 144 (154)
T 3kcm_A 106 GVPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSK 144 (154)
T ss_dssp SBCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC---
T ss_pred CCCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHH
Confidence 455688999999876665555245778888888877544
No 32
>1nvp_C Transcription initiation factor IIA beta chain; transcription regulation, DNA, complex, transcription/DNA complex; 2.10A {Homo sapiens} SCOP: b.56.1.1
Probab=20.30 E-value=86 Score=18.12 Aligned_cols=17 Identities=24% Similarity=0.573 Sum_probs=13.3
Q ss_pred ccc-eEEcCEEEEEEEeC
Q 034584 62 PTG-LHLGGTKYMVIQGE 78 (90)
Q Consensus 62 ~~G-i~l~G~KY~~lr~d 78 (90)
..| ++|+|+.|++.++.
T Consensus 54 KdGim~ingkdy~F~ka~ 71 (76)
T 1nvp_C 54 KDGIMNLNGRDYIFSKAI 71 (76)
T ss_dssp EEEEEEETTEEEEEEEEE
T ss_pred eccEEEECCEEEEEeccc
Confidence 344 46999999999886
Done!