BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034587
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SGA6|RS191_ARATH 40S ribosomal protein S19-1 OS=Arabidopsis thaliana GN=RPS19A PE=2
SV=1
Length = 143
Score = 152 bits (385), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 71/86 (82%), Positives = 78/86 (90%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
SMARK+YLR GLGVG+FRRIYGGSKRNGSRPPHFCKSSG IARHILQQL+ MNI++++
Sbjct: 58 AASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMNIVELD 117
Query: 65 PKGGRRITSSGQRDLDQVAGRIVVAP 90
KGGRRITSSGQRDLDQVAGRI V P
Sbjct: 118 TKGGRRITSSGQRDLDQVAGRIAVEP 143
>sp|Q9FNP8|RS193_ARATH 40S ribosomal protein S19-3 OS=Arabidopsis thaliana GN=RPS19C PE=2
SV=1
Length = 143
Score = 152 bits (383), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 70/85 (82%), Positives = 77/85 (90%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
SMARK+YLR GLGVG+FRRIYGGSKRNGSRPPHFCKSSG +ARHILQQLQ MNI+D++
Sbjct: 58 AASMARKVYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGVARHILQQLQTMNIVDLD 117
Query: 65 PKGGRRITSSGQRDLDQVAGRIVVA 89
KGGR+ITSSGQRDLDQVAGRI A
Sbjct: 118 TKGGRKITSSGQRDLDQVAGRIAAA 142
>sp|Q9LF30|RS192_ARATH 40S ribosomal protein S19-2 OS=Arabidopsis thaliana GN=RPS19B PE=2
SV=1
Length = 143
Score = 147 bits (370), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/84 (82%), Positives = 76/84 (90%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
SMARKIYLR GLGVG+FRRIYGGSKRNGSRPPHFCKSSG IARHILQQL+ M+I++++
Sbjct: 58 AASMARKIYLRGGLGVGAFRRIYGGSKRNGSRPPHFCKSSGGIARHILQQLETMSIVELD 117
Query: 65 PKGGRRITSSGQRDLDQVAGRIVV 88
KGGRRITSSGQRDLDQVAGRI
Sbjct: 118 TKGGRRITSSGQRDLDQVAGRIAA 141
>sp|P40978|RS19_ORYSJ 40S ribosomal protein S19 OS=Oryza sativa subsp. japonica GN=RPS19A
PE=3 SV=1
Length = 146
Score = 137 bits (344), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 64/84 (76%), Positives = 75/84 (89%)
Query: 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
S+ARKIYLRQG+GVG F++IYGG +RNGSRPPHFCKSSGAI+R+ILQQLQ M IID++P
Sbjct: 61 ASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDP 120
Query: 66 KGGRRITSSGQRDLDQVAGRIVVA 89
KGGR ITS G+RDLDQVAGR+ V
Sbjct: 121 KGGRLITSQGRRDLDQVAGRVDVT 144
>sp|Q9Y0H3|RS19_MYXGL 40S ribosomal protein S19 OS=Myxine glutinosa GN=rps19 PE=2 SV=1
Length = 145
Score = 97.4 bits (241), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 65/84 (77%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
S+AR +Y+R G+GVG+ +IYGG +RNG+RP H+ + S +AR +LQ L+ + +++ +
Sbjct: 57 TASVARHLYMRGGVGVGAMTKIYGGRQRNGTRPSHYSRGSRNVARKVLQSLEMLKMVEKD 116
Query: 65 PKGGRRITSSGQRDLDQVAGRIVV 88
P GGRR+TS GQRD+D++AG++VV
Sbjct: 117 PNGGRRLTSIGQRDMDRIAGQVVV 140
>sp|Q94613|RS19_MYAAR 40S ribosomal protein S19 OS=Mya arenaria GN=RPS19 PE=2 SV=1
Length = 149
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 62/83 (74%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
S+ R +Y+R G+GSF +IYGG +R G+ P HFCK++G+I+R +LQ L+ + I++ +
Sbjct: 56 AASICRHLYIRSPAGIGSFEKIYGGRRRRGTAPSHFCKANGSISRRLLQSLEGLKIVEKD 115
Query: 65 PKGGRRITSSGQRDLDQVAGRIV 87
P GGRR+TS G+RDLD++A +I
Sbjct: 116 PNGGRRLTSQGRRDLDRIAAQIA 138
>sp|P17074|RS19_RAT 40S ribosomal protein S19 OS=Rattus norvegicus GN=Rps19 PE=2 SV=3
Length = 145
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 60/85 (70%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
S AR +YLR G GVGS +IYGG +RNG RP HF + S ++AR +LQ L+ + +++ +
Sbjct: 57 AASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKD 116
Query: 65 PKGGRRITSSGQRDLDQVAGRIVVA 89
GGR++T GQRDLD++AG++ A
Sbjct: 117 QDGGRKLTPQGQRDLDRIAGQVAAA 141
>sp|Q9CZX8|RS19_MOUSE 40S ribosomal protein S19 OS=Mus musculus GN=Rps19 PE=1 SV=3
Length = 145
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 60/85 (70%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
S AR +YLR G GVGS +IYGG +RNG RP HF + S ++AR +LQ L+ + +++ +
Sbjct: 57 AASTARHLYLRGGAGVGSMTKIYGGRQRNGVRPSHFSRGSKSVARRVLQALEGLKMVEKD 116
Query: 65 PKGGRRITSSGQRDLDQVAGRIVVA 89
GGR++T GQRDLD++AG++ A
Sbjct: 117 QDGGRKLTPQGQRDLDRIAGQVAAA 141
>sp|Q54X51|RS19_DICDI 40S ribosomal protein S19 OS=Dictyostelium discoideum GN=rps19 PE=3
SV=1
Length = 148
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 64/83 (77%), Gaps = 1/83 (1%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
+ ++ARK+Y+R G GV ++RR++GG++RNG RP HF +G R+ L+QLQN+ +I+ +
Sbjct: 59 IATLARKVYIRGGDGVATYRRVFGGNRRNGVRPNHFADVNGGNIRYCLKQLQNLKVIETD 118
Query: 65 P-KGGRRITSSGQRDLDQVAGRI 86
KGGR IT++G+RDLD++A +I
Sbjct: 119 AVKGGRTITATGRRDLDRIAKQI 141
>sp|Q5R8M9|RS19_PONAB 40S ribosomal protein S19 OS=Pongo abelii GN=RPS19 PE=2 SV=3
Length = 145
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 59/85 (69%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
S AR +YLR G GVGS +IYGG +RNG P HF + S ++AR +LQ L+ + +++ +
Sbjct: 57 AASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKD 116
Query: 65 PKGGRRITSSGQRDLDQVAGRIVVA 89
GGR++T GQRDLD++AG++ A
Sbjct: 117 QDGGRKLTPQGQRDLDRIAGQVAAA 141
>sp|P39019|RS19_HUMAN 40S ribosomal protein S19 OS=Homo sapiens GN=RPS19 PE=1 SV=2
Length = 145
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 59/85 (69%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
S AR +YLR G GVGS +IYGG +RNG P HF + S ++AR +LQ L+ + +++ +
Sbjct: 57 AASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKD 116
Query: 65 PKGGRRITSSGQRDLDQVAGRIVVA 89
GGR++T GQRDLD++AG++ A
Sbjct: 117 QDGGRKLTPQGQRDLDRIAGQVAAA 141
>sp|Q32PD5|RS19_BOVIN 40S ribosomal protein S19 OS=Bos taurus GN=RPS19 PE=2 SV=3
Length = 145
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 40/85 (47%), Positives = 59/85 (69%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
S AR +YLR G GVGS +IYGG +RNG P HF + S ++AR +LQ L+ + +++ +
Sbjct: 57 AASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKD 116
Query: 65 PKGGRRITSSGQRDLDQVAGRIVVA 89
GGR++T GQRDLD++AG++ A
Sbjct: 117 QDGGRKLTPQGQRDLDRIAGQVAAA 141
>sp|Q8ITC3|RS19_ARGIR 40S ribosomal protein S19 OS=Argopecten irradians GN=RPS19 PE=2
SV=1
Length = 144
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 36/80 (45%), Positives = 59/80 (73%)
Query: 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK 66
S+ R +Y+R GVG+ +IYG KRNG+ P H+C+SSG++AR +LQ L+ +++ +
Sbjct: 58 SICRHLYIRSPAGVGALTKIYGDRKRNGTVPSHYCRSSGSVARRVLQALETQKLVEKDAN 117
Query: 67 GGRRITSSGQRDLDQVAGRI 86
GGR++TS GQ+DLD++A ++
Sbjct: 118 GGRKLTSQGQKDLDRIAAQV 137
>sp|Q90YQ4|RS19_ICTPU 40S ribosomal protein S19 OS=Ictalurus punctatus GN=rps19 PE=2 SV=1
Length = 147
Score = 89.4 bits (220), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 41/84 (48%), Positives = 57/84 (67%)
Query: 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
S R +YLR G+GVGS +IYGG KRNG P HF S +AR +LQ L+ + +++ +P
Sbjct: 60 ASTVRHLYLRGGVGVGSMIKIYGGRKRNGVCPSHFSVGSKNVARKVLQALEALKMVEKDP 119
Query: 66 KGGRRITSSGQRDLDQVAGRIVVA 89
GGRR+T G RDLD++AG++ A
Sbjct: 120 NGGRRLTPQGTRDLDRIAGQVAAA 143
>sp|Q9DFR5|RS19_GILMI 40S ribosomal protein S19 OS=Gillichthys mirabilis GN=rps19 PE=2
SV=1
Length = 147
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 40/84 (47%), Positives = 58/84 (69%)
Query: 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
S R +YLR G GVGS +IYGG +RNG P H+ + S +AR +LQ L+ + +I+ +P
Sbjct: 58 ASTVRHLYLRGGAGVGSMTKIYGGRQRNGVCPAHYSEGSKNVARKVLQALELLKMIEKDP 117
Query: 66 KGGRRITSSGQRDLDQVAGRIVVA 89
GGRR+T+ G RDLD++AG++ A
Sbjct: 118 NGGRRLTAQGTRDLDRIAGQVSAA 141
>sp|Q29308|RS19_PIG 40S ribosomal protein S19 (Fragment) OS=Sus scrofa GN=RPS19 PE=2
SV=3
Length = 136
Score = 88.2 bits (217), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/80 (48%), Positives = 56/80 (70%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
S AR +YLR G GVGS +IYGG +RNG P HF + S ++AR +LQ L+ + +++ +
Sbjct: 57 AASTARHLYLRGGAGVGSMTKIYGGRQRNGVMPSHFSRGSKSVARRVLQALEGLKMVEKD 116
Query: 65 PKGGRRITSSGQRDLDQVAG 84
GGR++T GQRDLD++AG
Sbjct: 117 QDGGRKLTPQGQRDLDRIAG 136
>sp|P07281|RS19B_YEAST 40S ribosomal protein S19-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS19B PE=1 SV=2
Length = 144
Score = 87.4 bits (215), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 59/82 (71%)
Query: 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
S+AR IY+R+ +GVG ++YGG+K G RP +SG+I R +LQ L+ + I++I P
Sbjct: 59 ASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISP 118
Query: 66 KGGRRITSSGQRDLDQVAGRIV 87
KGGRRI+ +GQRDLD++A + +
Sbjct: 119 KGGRRISENGQRDLDRIAAQTL 140
>sp|P07280|RS19A_YEAST 40S ribosomal protein S19-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPS19A PE=1 SV=2
Length = 144
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 59/82 (71%)
Query: 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
S+AR IY+R+ +GVG ++YGG+K G RP +SG+I R +LQ L+ + I++I P
Sbjct: 59 ASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISP 118
Query: 66 KGGRRITSSGQRDLDQVAGRIV 87
KGGRRI+ +GQRDLD++A + +
Sbjct: 119 KGGRRISENGQRDLDRIAAQTL 140
>sp|P27073|RS19_EMENI 40S ribosomal protein S19 OS=Emericella nidulans (strain FGSC A4 /
ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=rps19 PE=3
SV=1
Length = 148
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 41/82 (50%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIID-IEP 65
++AR IYLR+ +GVG R+++G +K GSRP H +SGA+ R +LQ L+ + +++ E
Sbjct: 59 AVARHIYLRKTVGVGRLRKVHGSTKNRGSRPAHHVDASGAVDRKVLQSLEKIGVLEQDEE 118
Query: 66 KGGRRITSSGQRDLDQVAGRIV 87
KGGRRIT SGQRDLD++A V
Sbjct: 119 KGGRRITQSGQRDLDRIAKTTV 140
>sp|P39018|RS19A_DROME 40S ribosomal protein S19a OS=Drosophila melanogaster GN=RpS19a
PE=2 SV=3
Length = 156
Score = 86.7 bits (213), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 56/82 (68%)
Query: 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
S+ R +Y R GVGS +IYGG KRNG P HFC+++ AR LQ L++ +++ P
Sbjct: 58 ASILRHLYHRSPAGVGSITKIYGGRKRNGVHPSHFCRAADGAARKALQALEHARLVEKHP 117
Query: 66 KGGRRITSSGQRDLDQVAGRIV 87
GGR+++S GQRDLD++A +IV
Sbjct: 118 DGGRKLSSIGQRDLDRIANQIV 139
>sp|P61155|RS19_PAGMA 40S ribosomal protein S19 OS=Pagrus major GN=rps19 PE=2 SV=1
Length = 146
Score = 85.5 bits (210), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 39/84 (46%), Positives = 56/84 (66%)
Query: 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
S R +YLR G GVGS +IYG +RNG P H+ S +AR +LQ L+ + +I+ +P
Sbjct: 58 ASTVRHLYLRGGAGVGSMTKIYGSRQRNGVCPAHYSVGSKNVARKVLQALELLKMIEKDP 117
Query: 66 KGGRRITSSGQRDLDQVAGRIVVA 89
GGRR+T+ G RDLD++AG++ A
Sbjct: 118 NGGRRLTAQGTRDLDRIAGQVAAA 141
>sp|Q8T5Z4|RS19_BRABE 40S ribosomal protein S19 OS=Branchiostoma belcheri GN=RPS19 PE=2
SV=1
Length = 147
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 38/85 (44%), Positives = 59/85 (69%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
S AR +Y+R G+GVG+ +IYGG KR G++P F S ++R +LQ L+ + +++ +
Sbjct: 58 AASTARHLYMRGGVGVGAMCKIYGGRKRRGTKPAKFRVCSRGVSRTVLQSLEGIKMVEKD 117
Query: 65 PKGGRRITSSGQRDLDQVAGRIVVA 89
GGRR+TS GQRDLD++AG++ A
Sbjct: 118 AAGGRRLTSQGQRDLDRIAGQVATA 142
>sp|Q7KS38|RS19B_DROME 40S ribosomal protein S19b OS=Drosophila melanogaster GN=RpS19b
PE=1 SV=3
Length = 155
Score = 84.7 bits (208), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 38/81 (46%), Positives = 54/81 (66%)
Query: 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK 66
S+ R +YLR GVG+F ++Y G KRNG RP C+SS R LQ L+ N+++ P
Sbjct: 59 SIMRHLYLRSPAGVGAFTKVYSGRKRNGVRPSKHCRSSDGCIRKALQALEAANMVERHPD 118
Query: 67 GGRRITSSGQRDLDQVAGRIV 87
GGR++T GQR+LD++A +IV
Sbjct: 119 GGRKLTPQGQRNLDRIANKIV 139
>sp|P39698|RS19S_ASCSU 40S ribosomal protein S19S OS=Ascaris suum GN=RPS19S PE=2 SV=1
Length = 150
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 57/81 (70%), Gaps = 1/81 (1%)
Query: 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK 66
S+AR++Y+R GVG+ RR+YGG+KR G P HF ++SG++ R LQ L+ + ++ P
Sbjct: 60 SVARRLYIRSPTGVGALRRVYGGNKRRGVTPNHFARASGSVIRKALQTLEAIKWVEKHPD 119
Query: 67 G-GRRITSSGQRDLDQVAGRI 86
G GR +T G++DLD++A ++
Sbjct: 120 GNGRILTKQGRKDLDRIASQM 140
>sp|P58234|RS19A_SCHPO 40S ribosomal protein S19-A OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps19a PE=2 SV=1
Length = 144
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
++AR IYLR+ +GVG ++YGGS G RP H SG++ R ++Q L+ + +++
Sbjct: 58 AAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSD 117
Query: 66 KGGRRITSSGQRDLDQVA 83
GGRRI+ GQRDLD++A
Sbjct: 118 NGGRRISQQGQRDLDRIA 135
>sp|P79016|RS19B_SCHPO 40S ribosomal protein S19-B OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=rps19b PE=3 SV=2
Length = 143
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/78 (43%), Positives = 52/78 (66%)
Query: 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
++AR IYLR+ +GVG ++YGGS G RP H SG++ R ++Q L+ + +++
Sbjct: 58 AAIARHIYLRKQVGVGRLCKVYGGSVNRGMRPSHHRDGSGSVQRKVVQSLEKIGVLEKSD 117
Query: 66 KGGRRITSSGQRDLDQVA 83
GGRRI+ GQRDLD++A
Sbjct: 118 NGGRRISQQGQRDLDRIA 135
>sp|P24494|RS19G_ASCSU 40S ribosomal protein S19G OS=Ascaris suum GN=RPS19G PE=2 SV=1
Length = 148
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/81 (43%), Positives = 54/81 (66%), Gaps = 1/81 (1%)
Query: 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK 66
S+AR++Y+R GV + R +YGGSKR G P HF K+SG++ R LQ L+ + + P
Sbjct: 60 SIARRLYVRSPTGVDALRLVYGGSKRRGVVPNHFAKASGSVIRKALQTLEAIKWVQKHPD 119
Query: 67 G-GRRITSSGQRDLDQVAGRI 86
G GR +T G++DLD++A ++
Sbjct: 120 GNGRVLTKQGRKDLDRIASQM 140
>sp|O18650|RS19_CAEEL 40S ribosomal protein S19 OS=Caenorhabditis elegans GN=rps-19 PE=2
SV=1
Length = 146
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
S+AR +Y R G+G+F+++YGG+KR G P HF S+G R +QQL+ + ++
Sbjct: 58 AASLARHLYFRPA-GIGAFKKVYGGNKRRGVAPNHFQTSAGNCLRKAVQQLEKIKWVEKH 116
Query: 65 PKG-GRRITSSGQRDLDQVA 83
P G GR ++ G++DLD++A
Sbjct: 117 PDGKGRILSKQGRKDLDRIA 136
>sp|O15631|RS19_ENTHI 40S ribosomal protein S19 OS=Entamoeba histolytica GN=RPS19 PE=2
SV=1
Length = 148
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
++ARK+YL G+GV + RR YG P H SG + R+ILQQL+ M I+ +
Sbjct: 59 AAIARKVYLNNGIGVMALRRAYGDQYNKHYYPSHRTLGSGKVNRYILQQLEKMGIVG-KI 117
Query: 66 KGGRRITSSGQRDLDQVAGRIV 87
+ GR +T G++D+D++A + +
Sbjct: 118 QSGRSLTKEGRKDMDKIASKFI 139
>sp|O28210|RS19E_ARCFU 30S ribosomal protein S19e OS=Archaeoglobus fulgidus (strain ATCC
49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126)
GN=rps19e PE=3 SV=1
Length = 147
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
+ S+ R++Y+ +G+ R YGG KR GS+PP F K SGAI R+ L QL+ + + +
Sbjct: 53 LASIFRRVYIDGPVGIERLRTFYGGRKRRGSKPPKFRKGSGAIVRNALHQLEQLGFVK-K 111
Query: 65 PKGGRRITSSGQRDLDQVAGRI 86
+ GR +T G+ LD+VA +
Sbjct: 112 TREGRVVTPMGRSFLDKVATEL 133
>sp|P54057|RS19E_METJA 30S ribosomal protein S19e OS=Methanocaldococcus jannaschii (strain
ATCC 43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=rps19e PE=3 SV=1
Length = 148
Score = 62.0 bits (149), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
S+ RKIY+ +GV R YGG K G P HF K SG I R LQ+L+ + +++ P
Sbjct: 55 ASILRKIYIYGPVGVSRLRTAYGGRKNRGHEPEHFYKGSGNIIRKALQELEKLGLVEKTP 114
Query: 66 KGGRRITSSGQRDLDQVAGRI 86
+ GR +T G+ LD +A +
Sbjct: 115 E-GRVVTPKGRSFLDNIAKEV 134
>sp|Q9YD22|RS19E_AERPE 30S ribosomal protein S19e OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rps19e
PE=3 SV=1
Length = 153
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%), Gaps = 1/82 (1%)
Query: 7 SMARKIYLR-QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
S+ RK+Y + +G+ +FR IYGG + GS P HF K+ G++ R ILQQL+ ++ P
Sbjct: 58 SILRKLYKSPEPIGIETFRTIYGGRQNRGSAPEHFRKAGGSVPRKILQQLEEAGLVVKVP 117
Query: 66 KGGRRITSSGQRDLDQVAGRIV 87
GR I+ +G+ LD A I+
Sbjct: 118 GRGRTISPAGRSLLDTTAREIM 139
>sp|O27653|RS19E_METTH 30S ribosomal protein S19e OS=Methanothermobacter
thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM
10044 / NBRC 100330 / Delta H) GN=rps19e PE=3 SV=1
Length = 145
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
++ R++Y+ +GV S R YGG K GSRP F + SGAI R LQQL+ +I E
Sbjct: 56 AALLRRVYIDGPVGVNSLRTHYGGKKDRGSRPEKFRRGSGAIIRRALQQLEESGLIKRE- 114
Query: 66 KGGRRITSSGQRDLDQVAGRI 86
+ GR IT G+ LD+ A +
Sbjct: 115 ENGRVITPEGRSFLDKAAAEV 135
>sp|Q9V0G8|RS19E_PYRAB 30S ribosomal protein S19e OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rps19e PE=1 SV=1
Length = 150
Score = 59.7 bits (143), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 45/82 (54%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
V S+ R++YL +G+ R YGG K G P F K+ G+I R LQQL+ ++
Sbjct: 55 VASILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKV 114
Query: 65 PKGGRRITSSGQRDLDQVAGRI 86
P GR IT G+ LD++A +
Sbjct: 115 PGKGRVITPKGRSFLDKIATEL 136
>sp|O59041|RS19E_PYRHO 30S ribosomal protein S19e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rps19e PE=3 SV=1
Length = 150
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
V S+ R++Y+ +G+ R YGG K G P F K+ G+I R LQQL+ I+
Sbjct: 55 VASILRRVYIDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFIEKV 114
Query: 65 PKGGRRITSSGQRDLDQVAGRI 86
P GR +T G+ LD++A +
Sbjct: 115 PGKGRVVTPKGRSFLDKIATEL 136
>sp|P19952|RS19E_HALMA 30S ribosomal protein S19e OS=Haloarcula marismortui (strain ATCC
43049 / DSM 3752 / JCM 8966 / VKM B-1809) GN=rps19e PE=1
SV=3
Length = 153
Score = 52.4 bits (124), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 45/86 (52%), Gaps = 4/86 (4%)
Query: 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSR----PPHFCKSSGAIARHILQQLQNMNIID 62
S+ RK+ + +GV + R YG SK+ +R P K SG I R LQQL++ ++
Sbjct: 57 SLLRKVAVDGPVGVNALRSEYGTSKQGTTRYRVRPHQKTKGSGNIIRTALQQLEDAGYVE 116
Query: 63 IEPKGGRRITSSGQRDLDQVAGRIVV 88
GRR+T G+ LD AG ++
Sbjct: 117 TSENDGRRVTGDGRSLLDDTAGDLLT 142
>sp|Q9HM21|RS19E_THEAC 30S ribosomal protein S19e OS=Thermoplasma acidophilum (strain ATCC
25905 / DSM 1728 / JCM 9062 / NBRC 15155 / AMRC-C165)
GN=rps19e PE=3 SV=1
Length = 150
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
+M RK+Y+ LG+ YGG GS+ H + S +I R++ +L+ + P
Sbjct: 56 AAMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAAQGSRSIIRYLFHELEKAGYVQKTP 115
Query: 66 KGGRRITSSGQRDLDQVAGRIV 87
K GR ++ G LD + I+
Sbjct: 116 K-GRSLSPQGMSLLDNASKDII 136
>sp|Q97CU4|RS19E_THEVO 30S ribosomal protein S19e OS=Thermoplasma volcanium (strain ATCC
51530 / DSM 4299 / JCM 9571 / NBRC 15438 / GSS1)
GN=rps19e PE=3 SV=1
Length = 150
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Query: 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65
SM RK+Y+ LG+ YGG GS+ H S +I R + +L++ ++
Sbjct: 56 ASMLRKLYINGYLGISRMSSEYGGKVDRGSKRYHAASGSRSITRFLFHELESAGLVQKTQ 115
Query: 66 KGGRRITSSGQRDLDQVAGRIV 87
K GR ++ G LD + I+
Sbjct: 116 K-GRSLSPQGMSLLDNASKEII 136
>sp|Q8SQS8|RS19_ENCCU 40S ribosomal protein S19 OS=Encephalitozoon cuniculi (strain
GB-M1) GN=RPS19 PE=1 SV=1
Length = 137
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 39/82 (47%), Gaps = 2/82 (2%)
Query: 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64
+ S+ R+I ++ + + YG K G RP + + I +L+ L+NM I+
Sbjct: 56 MASIVRQISIKGAVTSEFLAKRYGSLKNRGCRPSKYVGAYPEIGESVLENLKNMGWINEH 115
Query: 65 PKGGRRITSSGQRDLDQVAGRI 86
PK +T G+ + ++ ++
Sbjct: 116 PKD--MLTEKGKTIVREIIEKV 135
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,250,988
Number of Sequences: 539616
Number of extensions: 1238953
Number of successful extensions: 2472
Number of sequences better than 100.0: 40
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2427
Number of HSP's gapped (non-prelim): 40
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)