Query 034587
Match_columns 90
No_of_seqs 100 out of 303
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 06:45:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034587.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034587hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz6_S 40S ribosomal protein S 100.0 5.1E-45 1.7E-49 259.8 7.2 87 3-89 58-144 (146)
2 3u5c_T 40S ribosomal protein S 100.0 3.6E-45 1.2E-49 260.1 6.1 87 3-89 56-142 (144)
3 2xzm_T RPS19E; ribosome, trans 100.0 1.3E-43 4.3E-48 254.6 8.8 86 3-88 59-149 (155)
4 2v7f_A RPS19, RPS19E SSU ribos 99.9 6.8E-28 2.3E-32 170.7 7.7 87 2-88 52-138 (150)
5 1r7j_A Conserved hypothetical 97.7 0.00013 4.3E-09 46.9 6.2 63 5-84 10-72 (95)
6 2pg4_A Uncharacterized protein 97.6 0.00015 5.3E-09 45.0 5.4 70 3-86 15-90 (95)
7 3g3z_A NMB1585, transcriptiona 97.5 0.0004 1.4E-08 44.9 7.2 69 4-86 32-106 (145)
8 1on2_A Transcriptional regulat 97.5 0.00042 1.5E-08 45.2 7.2 68 3-84 4-75 (142)
9 2x4h_A Hypothetical protein SS 97.5 0.00048 1.6E-08 44.7 7.3 68 2-84 12-83 (139)
10 2h09_A Transcriptional regulat 97.5 0.00035 1.2E-08 46.3 6.8 62 9-84 46-107 (155)
11 2gxg_A 146AA long hypothetical 97.5 0.0006 2.1E-08 43.7 7.6 67 4-85 38-110 (146)
12 3k0l_A Repressor protein; heli 97.5 0.00076 2.6E-08 44.7 8.2 68 5-86 48-121 (162)
13 3ech_A MEXR, multidrug resista 97.5 0.00058 2E-08 44.1 7.4 69 4-86 38-112 (142)
14 1jgs_A Multiple antibiotic res 97.4 0.00082 2.8E-08 42.8 7.7 69 4-86 35-109 (138)
15 3oop_A LIN2960 protein; protei 97.4 0.00046 1.6E-08 44.5 6.5 68 5-86 39-112 (143)
16 2qvo_A Uncharacterized protein 97.4 0.00026 9E-09 44.2 4.7 70 2-86 11-88 (95)
17 3eco_A MEPR; mutlidrug efflux 97.4 0.00084 2.9E-08 42.9 7.2 69 4-86 32-108 (139)
18 2frh_A SARA, staphylococcal ac 97.4 0.00055 1.9E-08 44.4 6.4 68 5-86 39-114 (127)
19 1sfx_A Conserved hypothetical 97.3 0.00085 2.9E-08 40.8 6.6 70 3-86 20-94 (109)
20 3bro_A Transcriptional regulat 97.3 0.0012 4.1E-08 42.0 7.5 68 4-85 35-110 (141)
21 3bpv_A Transcriptional regulat 97.3 0.0011 3.8E-08 42.1 7.2 69 3-85 29-103 (138)
22 2qww_A Transcriptional regulat 97.3 0.00087 3E-08 43.5 6.8 67 5-85 43-117 (154)
23 2rdp_A Putative transcriptiona 97.3 0.0013 4.4E-08 42.4 7.5 69 4-86 43-117 (150)
24 4hbl_A Transcriptional regulat 97.3 0.00078 2.7E-08 44.0 6.5 68 5-86 43-116 (149)
25 2nyx_A Probable transcriptiona 97.3 0.001 3.4E-08 44.5 7.1 67 5-85 47-119 (168)
26 3s2w_A Transcriptional regulat 97.3 0.00094 3.2E-08 44.0 6.8 67 6-86 53-125 (159)
27 1tbx_A ORF F-93, hypothetical 97.3 0.00084 2.9E-08 41.6 6.1 69 4-86 9-84 (99)
28 2bv6_A MGRA, HTH-type transcri 97.2 0.00099 3.4E-08 42.7 6.3 68 4-85 38-111 (142)
29 2hr3_A Probable transcriptiona 97.2 0.0013 4.5E-08 42.2 6.9 67 5-85 37-110 (147)
30 3jw4_A Transcriptional regulat 97.2 0.00093 3.2E-08 43.4 6.2 68 5-86 43-118 (148)
31 3e6m_A MARR family transcripti 97.2 0.0012 4E-08 43.7 6.6 68 5-86 55-128 (161)
32 2eth_A Transcriptional regulat 97.2 0.0018 6.2E-08 42.3 7.5 69 3-85 44-118 (154)
33 3bja_A Transcriptional regulat 97.2 0.0016 5.6E-08 41.2 7.1 68 4-85 34-107 (139)
34 2fa5_A Transcriptional regulat 97.2 0.0025 8.6E-08 41.7 7.9 67 5-85 51-123 (162)
35 3kp7_A Transcriptional regulat 97.2 0.0022 7.5E-08 41.7 7.5 65 6-85 41-113 (151)
36 3hsr_A HTH-type transcriptiona 97.1 0.00095 3.3E-08 43.2 5.6 69 4-86 37-111 (140)
37 2fbi_A Probable transcriptiona 97.1 0.0014 4.7E-08 41.7 6.3 69 3-85 36-110 (142)
38 2nnn_A Probable transcriptiona 97.1 0.0018 6.3E-08 41.0 6.8 69 3-85 38-112 (140)
39 3bj6_A Transcriptional regulat 97.1 0.0021 7.3E-08 41.5 7.0 67 5-85 42-114 (152)
40 3nrv_A Putative transcriptiona 97.1 0.0029 1E-07 40.7 7.7 68 4-85 41-114 (148)
41 3cjn_A Transcriptional regulat 97.1 0.0021 7E-08 42.2 6.9 68 4-85 53-126 (162)
42 1lj9_A Transcriptional regulat 97.0 0.0028 9.5E-08 40.5 7.0 67 5-85 31-103 (144)
43 3deu_A Transcriptional regulat 97.0 0.003 1E-07 42.4 7.3 68 5-86 55-129 (166)
44 2fbh_A Transcriptional regulat 97.0 0.0047 1.6E-07 39.3 7.9 67 5-85 39-112 (146)
45 3cuo_A Uncharacterized HTH-typ 97.0 0.0028 9.6E-08 38.5 6.5 67 7-87 28-97 (99)
46 2a61_A Transcriptional regulat 97.0 0.0026 8.8E-08 40.6 6.5 68 4-85 34-107 (145)
47 3cdh_A Transcriptional regulat 97.0 0.004 1.4E-07 40.5 7.5 67 5-85 45-117 (155)
48 1ub9_A Hypothetical protein PH 96.9 0.0022 7.6E-08 38.9 5.6 66 7-86 20-91 (100)
49 3tgn_A ADC operon repressor AD 96.9 0.0036 1.2E-07 40.1 6.9 63 6-83 41-109 (146)
50 1stz_A Heat-inducible transcri 96.9 0.0043 1.5E-07 47.7 8.4 70 2-83 16-92 (338)
51 3hrs_A Metalloregulator SCAR; 96.9 0.0025 8.5E-08 45.4 6.6 63 8-84 7-73 (214)
52 1s3j_A YUSO protein; structura 96.9 0.0023 7.8E-08 41.4 5.9 68 4-85 38-111 (155)
53 2hzt_A Putative HTH-type trans 96.9 0.0023 7.7E-08 40.8 5.8 64 6-83 17-86 (107)
54 2oqg_A Possible transcriptiona 96.9 0.0031 1E-07 39.5 6.2 64 6-85 24-91 (114)
55 3fm5_A Transcriptional regulat 96.9 0.0047 1.6E-07 40.1 7.2 68 5-86 41-115 (150)
56 2fsw_A PG_0823 protein; alpha- 96.9 0.0023 8E-08 40.6 5.4 63 7-83 29-97 (107)
57 1z7u_A Hypothetical protein EF 96.8 0.002 7E-08 41.3 5.0 63 6-83 25-94 (112)
58 3u2r_A Regulatory protein MARR 96.7 0.0042 1.4E-07 41.2 6.2 68 5-86 48-123 (168)
59 2p8t_A Hypothetical protein PH 96.7 0.0046 1.6E-07 45.3 6.6 62 8-84 20-82 (200)
60 1xmk_A Double-stranded RNA-spe 96.7 0.0021 7.2E-08 40.7 4.1 62 4-80 12-77 (79)
61 2f2e_A PA1607; transcription f 96.6 0.0051 1.7E-07 41.5 6.2 62 7-83 28-94 (146)
62 3bdd_A Regulatory protein MARR 96.6 0.0027 9.3E-08 40.3 4.6 62 4-79 32-99 (142)
63 2o0m_A Transcriptional regulat 96.6 0.00031 1.1E-08 53.2 0.0 65 3-82 20-84 (345)
64 3nqo_A MARR-family transcripti 96.6 0.0085 2.9E-07 41.0 7.3 68 5-86 43-118 (189)
65 4b8x_A SCO5413, possible MARR- 96.6 0.0055 1.9E-07 40.5 6.0 65 7-85 39-111 (147)
66 3f3x_A Transcriptional regulat 96.5 0.0086 2.9E-07 38.4 6.5 66 6-86 40-111 (144)
67 2pex_A Transcriptional regulat 96.5 0.0035 1.2E-07 40.7 4.6 66 4-83 48-119 (153)
68 3boq_A Transcriptional regulat 96.5 0.0068 2.3E-07 39.4 5.9 68 5-86 49-123 (160)
69 4a5n_A Uncharacterized HTH-typ 96.5 0.0077 2.6E-07 40.8 6.4 64 6-83 29-98 (131)
70 1y0u_A Arsenical resistance op 96.5 0.0043 1.5E-07 38.5 4.6 54 7-77 35-88 (96)
71 2fxa_A Protease production reg 96.5 0.0057 2E-07 43.0 5.7 67 5-85 50-122 (207)
72 3l7w_A Putative uncharacterize 96.5 0.0033 1.1E-07 40.4 4.1 68 7-85 13-87 (108)
73 1z91_A Organic hydroperoxide r 96.4 0.0022 7.6E-08 41.2 3.2 66 4-83 41-112 (147)
74 3df8_A Possible HXLR family tr 96.4 0.0064 2.2E-07 39.2 5.4 62 7-83 31-97 (111)
75 1yg2_A Gene activator APHA; vi 96.4 0.014 4.7E-07 40.3 7.2 77 1-85 1-85 (179)
76 1fx7_A Iron-dependent represso 96.3 0.012 4E-07 42.0 6.7 68 3-84 6-77 (230)
77 1bja_A Transcription regulator 96.3 0.011 3.8E-07 38.8 6.1 68 2-84 15-83 (95)
78 1q1h_A TFE, transcription fact 96.3 0.004 1.4E-07 39.3 3.8 54 5-72 20-78 (110)
79 3b73_A PHIH1 repressor-like pr 96.2 0.012 4E-07 39.0 6.0 60 7-80 17-78 (111)
80 2b0l_A GTP-sensing transcripti 96.2 0.005 1.7E-07 39.8 3.8 51 19-83 45-97 (102)
81 4aik_A Transcriptional regulat 96.2 0.038 1.3E-06 36.7 8.3 66 7-86 35-107 (151)
82 1okr_A MECI, methicillin resis 96.2 0.011 3.9E-07 37.3 5.4 69 4-82 11-83 (123)
83 3pqk_A Biofilm growth-associat 96.1 0.045 1.5E-06 33.9 7.9 61 7-82 27-90 (102)
84 4fx0_A Probable transcriptiona 96.1 0.017 5.8E-07 38.3 6.1 64 7-84 37-110 (148)
85 1yyv_A Putative transcriptiona 96.1 0.0072 2.5E-07 40.3 4.2 63 7-83 39-107 (131)
86 2y75_A HTH-type transcriptiona 96.0 0.025 8.4E-07 36.7 6.6 60 4-77 10-74 (129)
87 3f8b_A Transcriptional regulat 96.0 0.01 3.5E-07 38.7 4.7 44 42-85 44-95 (116)
88 2qq9_A Diphtheria toxin repres 95.9 0.017 5.8E-07 41.2 5.9 68 3-84 6-77 (226)
89 3jth_A Transcription activator 95.8 0.039 1.3E-06 33.9 6.5 66 7-87 27-95 (98)
90 2fbk_A Transcriptional regulat 95.7 0.021 7.2E-07 38.4 5.4 67 5-85 71-146 (181)
91 3f6v_A Possible transcriptiona 95.7 0.019 6.4E-07 39.2 5.1 65 6-86 61-129 (151)
92 2obp_A Putative DNA-binding pr 95.6 0.037 1.3E-06 36.1 6.2 63 6-82 19-91 (96)
93 2wte_A CSA3; antiviral protein 95.6 0.041 1.4E-06 40.4 7.0 66 2-81 151-217 (244)
94 3ihu_A Transcriptional regulat 95.5 0.018 6.2E-07 40.3 4.7 51 18-82 40-90 (222)
95 1hsj_A Fusion protein consisti 95.5 0.024 8.3E-07 43.2 5.7 68 6-87 407-482 (487)
96 1ku9_A Hypothetical protein MJ 95.4 0.093 3.2E-06 33.0 7.4 66 4-83 27-97 (152)
97 4esb_A Transcriptional regulat 95.4 0.03 1E-06 36.6 5.1 70 8-86 14-91 (115)
98 2kko_A Possible transcriptiona 95.3 0.024 8.3E-07 36.0 4.4 61 7-82 29-92 (108)
99 3tqn_A Transcriptional regulat 95.3 0.022 7.7E-07 36.7 4.2 50 19-82 35-84 (113)
100 1r1u_A CZRA, repressor protein 95.2 0.092 3.1E-06 32.9 6.9 59 6-79 29-90 (106)
101 3ic7_A Putative transcriptiona 95.2 0.016 5.4E-07 38.2 3.3 40 44-83 48-87 (126)
102 3f6o_A Probable transcriptiona 95.1 0.049 1.7E-06 34.9 5.5 64 7-85 22-88 (118)
103 3sxy_A Transcriptional regulat 95.1 0.017 5.7E-07 40.4 3.4 66 4-83 16-87 (218)
104 1u2w_A CADC repressor, cadmium 95.1 0.1 3.5E-06 33.7 7.0 60 7-81 46-109 (122)
105 1xma_A Predicted transcription 95.0 0.029 1E-06 38.1 4.3 72 7-85 45-124 (145)
106 3by6_A Predicted transcription 95.0 0.14 4.7E-06 33.7 7.5 42 19-74 37-78 (126)
107 2hs5_A Putative transcriptiona 95.0 0.024 8.2E-07 40.5 4.0 51 18-82 52-102 (239)
108 2co5_A Viral protein F93; vira 95.0 0.044 1.5E-06 35.4 4.9 44 43-86 42-88 (99)
109 3hhh_A Transcriptional regulat 95.0 0.035 1.2E-06 36.4 4.5 69 8-85 18-94 (116)
110 4esf_A PADR-like transcription 94.8 0.044 1.5E-06 35.9 4.6 44 42-85 41-92 (117)
111 1mkm_A ICLR transcriptional re 94.8 0.17 5.8E-06 36.2 8.1 60 3-76 8-68 (249)
112 3c7j_A Transcriptional regulat 94.7 0.035 1.2E-06 39.8 4.2 52 17-82 49-100 (237)
113 2htj_A P fimbrial regulatory p 94.7 0.06 2.1E-06 32.4 4.7 45 7-65 4-48 (81)
114 2d1h_A ST1889, 109AA long hypo 94.7 0.21 7E-06 30.0 7.2 46 6-65 24-70 (109)
115 2dql_A PEX protein; circadian 94.6 0.052 1.8E-06 35.4 4.6 46 41-86 52-106 (115)
116 2ek5_A Predicted transcription 94.6 0.15 5.2E-06 33.7 7.0 47 19-79 30-76 (129)
117 3neu_A LIN1836 protein; struct 94.6 0.063 2.2E-06 35.2 5.0 43 19-75 39-81 (125)
118 1p4x_A Staphylococcal accessor 94.5 0.071 2.4E-06 39.0 5.6 67 6-86 161-235 (250)
119 2esh_A Conserved hypothetical 94.5 0.026 9E-07 36.5 2.9 72 7-85 17-96 (118)
120 3l9f_A Putative uncharacterize 94.2 0.035 1.2E-06 39.9 3.4 65 15-85 47-119 (204)
121 1sd4_A Penicillinase repressor 94.2 0.16 5.5E-06 31.9 6.2 54 6-69 13-66 (126)
122 2xrn_A HTH-type transcriptiona 94.2 0.082 2.8E-06 37.9 5.2 59 3-75 6-66 (241)
123 1v4r_A Transcriptional repress 94.2 0.058 2E-06 33.7 3.9 43 19-75 37-79 (102)
124 2jt1_A PEFI protein; solution 94.1 0.11 3.9E-06 32.2 5.1 53 4-71 5-63 (77)
125 2jsc_A Transcriptional regulat 93.9 0.11 3.8E-06 33.3 5.0 56 6-77 24-83 (118)
126 4ham_A LMO2241 protein; struct 93.7 0.047 1.6E-06 36.0 3.0 42 19-74 40-81 (134)
127 1r1t_A Transcriptional repress 93.6 0.16 5.5E-06 33.0 5.4 53 7-75 50-106 (122)
128 3mq0_A Transcriptional repress 93.6 0.12 4.2E-06 37.8 5.3 58 3-74 30-88 (275)
129 2zfw_A PEX; five alpha-helices 93.4 0.067 2.3E-06 36.9 3.5 44 42-85 75-127 (148)
130 2e1n_A PEX, period extender; c 93.4 0.076 2.6E-06 36.0 3.7 46 41-86 64-118 (138)
131 2di3_A Bacterial regulatory pr 93.3 0.045 1.5E-06 38.7 2.5 44 20-77 31-78 (239)
132 3elk_A Putative transcriptiona 93.2 0.054 1.9E-06 35.5 2.6 38 46-83 48-93 (117)
133 1ylf_A RRF2 family protein; st 93.1 0.25 8.5E-06 33.0 5.9 57 6-76 17-76 (149)
134 1i1g_A Transcriptional regulat 93.1 0.38 1.3E-05 30.9 6.6 70 5-89 6-87 (141)
135 2o0y_A Transcriptional regulat 93.1 0.3 1E-05 35.2 6.7 60 3-76 23-83 (260)
136 3aaf_A Werner syndrome ATP-dep 93.1 0.62 2.1E-05 31.3 7.9 80 4-83 17-110 (134)
137 3ri2_A Transcriptional regulat 92.9 0.15 5.2E-06 33.8 4.5 44 42-85 49-99 (123)
138 3u1d_A Uncharacterized protein 92.8 0.12 4E-06 36.2 4.0 62 7-81 33-107 (151)
139 2lkp_A Transcriptional regulat 92.7 0.36 1.2E-05 30.3 5.9 60 7-81 36-96 (119)
140 3cta_A Riboflavin kinase; stru 92.7 0.31 1.1E-05 34.3 6.1 66 6-85 10-84 (230)
141 3r4k_A Transcriptional regulat 92.5 0.12 4.1E-06 37.4 3.9 58 3-74 6-65 (260)
142 1p4x_A Staphylococcal accessor 92.3 0.23 7.7E-06 36.3 5.2 66 7-86 38-111 (250)
143 3t8r_A Staphylococcus aureus C 92.2 0.28 9.5E-06 32.8 5.2 56 7-76 15-75 (143)
144 1hw1_A FADR, fatty acid metabo 92.2 0.082 2.8E-06 36.9 2.6 42 19-74 33-74 (239)
145 2g9w_A Conserved hypothetical 91.9 0.58 2E-05 30.4 6.4 61 6-76 12-78 (138)
146 2g7u_A Transcriptional regulat 91.5 0.35 1.2E-05 34.8 5.4 58 3-75 14-72 (257)
147 3k69_A Putative transcription 91.5 0.38 1.3E-05 33.0 5.3 46 16-75 27-74 (162)
148 2pn6_A ST1022, 150AA long hypo 91.4 0.71 2.4E-05 30.0 6.4 71 6-90 6-89 (150)
149 1xn7_A Hypothetical protein YH 91.4 0.43 1.5E-05 29.6 5.0 44 7-64 6-49 (78)
150 2heo_A Z-DNA binding protein 1 91.4 0.41 1.4E-05 28.2 4.7 46 7-66 14-60 (67)
151 1uly_A Hypothetical protein PH 91.1 0.26 8.8E-06 34.7 4.2 67 6-87 23-105 (192)
152 2rkh_A Putative APHA-like tran 90.7 0.098 3.4E-06 37.1 1.7 37 51-87 54-97 (180)
153 2ia0_A Putative HTH-type trans 90.6 1.9 6.5E-05 29.3 8.2 70 7-90 21-108 (171)
154 3lwf_A LIN1550 protein, putati 90.6 0.6 2.1E-05 32.1 5.6 46 16-75 43-90 (159)
155 2k02_A Ferrous iron transport 89.9 0.49 1.7E-05 30.2 4.4 44 7-64 6-49 (87)
156 1p6r_A Penicillinase repressor 89.8 0.4 1.4E-05 28.5 3.7 51 6-66 12-62 (82)
157 2cg4_A Regulatory protein ASNC 89.4 1.9 6.4E-05 28.2 7.2 71 6-90 11-93 (152)
158 3l09_A Putative transcriptiona 89.3 0.22 7.4E-06 37.5 2.7 75 3-88 22-105 (266)
159 1in4_A RUVB, holliday junction 89.0 0.48 1.6E-05 34.9 4.3 50 15-79 274-324 (334)
160 2w48_A Sorbitol operon regulat 88.9 0.92 3.1E-05 33.5 5.8 47 4-64 8-55 (315)
161 2wv0_A YVOA, HTH-type transcri 88.6 0.41 1.4E-05 34.3 3.7 42 19-74 36-77 (243)
162 3eet_A Putative GNTR-family tr 88.6 0.36 1.2E-05 35.4 3.4 42 19-74 55-96 (272)
163 2ia2_A Putative transcriptiona 88.2 0.46 1.6E-05 34.4 3.7 57 3-74 21-78 (265)
164 1xd7_A YWNA; structural genomi 88.1 0.47 1.6E-05 31.5 3.5 54 7-75 13-68 (145)
165 3edp_A LIN2111 protein; APC883 88.0 0.36 1.2E-05 34.5 3.0 42 19-74 35-76 (236)
166 2k4b_A Transcriptional regulat 87.7 0.53 1.8E-05 30.1 3.4 52 7-69 39-90 (99)
167 2p5v_A Transcriptional regulat 87.5 3.2 0.00011 27.3 7.4 70 6-90 13-96 (162)
168 3bwg_A Uncharacterized HTH-typ 87.1 0.44 1.5E-05 34.0 3.0 41 19-73 31-71 (239)
169 3f8m_A GNTR-family protein tra 86.9 0.39 1.3E-05 34.6 2.7 41 19-74 38-78 (248)
170 2fu4_A Ferric uptake regulatio 86.4 0.94 3.2E-05 26.7 3.8 54 4-66 18-73 (83)
171 3kfw_X Uncharacterized protein 85.5 1.1 3.8E-05 33.1 4.6 75 1-87 1-78 (247)
172 1olt_A Oxygen-independent copr 84.6 0.64 2.2E-05 36.2 3.0 62 14-86 379-440 (457)
173 2zkz_A Transcriptional repress 84.6 1.6 5.3E-05 27.0 4.3 60 7-81 31-93 (99)
174 2qm3_A Predicted methyltransfe 84.1 1.8 6E-05 32.5 5.2 57 7-81 47-103 (373)
175 3r0a_A Putative transcriptiona 84.1 4.8 0.00017 25.7 6.7 46 6-65 29-76 (123)
176 2qlz_A Transcription factor PF 82.1 0.59 2E-05 34.1 1.8 42 7-63 16-57 (232)
177 2p4w_A Transcriptional regulat 80.6 2.7 9.1E-05 29.7 4.8 44 7-65 19-62 (202)
178 3u5c_Z RP45, S31, YS23, 40S ri 79.8 0.75 2.6E-05 30.8 1.6 22 44-65 72-93 (108)
179 1oyi_A Double-stranded RNA-bin 79.4 2.3 8E-05 26.8 3.7 45 6-65 20-64 (82)
180 2ra5_A Putative transcriptiona 79.3 0.4 1.4E-05 34.5 0.1 42 19-74 42-83 (247)
181 2vxz_A Pyrsv_GP04; viral prote 79.2 2.4 8.2E-05 30.4 4.1 50 3-67 11-60 (165)
182 3iz6_V 40S ribosomal protein S 79.1 0.76 2.6E-05 30.8 1.4 22 44-65 73-94 (108)
183 3k2z_A LEXA repressor; winged 79.0 3.1 0.00011 28.5 4.6 39 17-69 24-62 (196)
184 2dk5_A DNA-directed RNA polyme 78.8 4.1 0.00014 25.6 4.8 42 7-62 24-67 (91)
185 1bm9_A RTP, TER, replication t 78.7 1.8 6.2E-05 29.3 3.2 33 45-77 54-96 (122)
186 1bia_A BIRA bifunctional prote 78.2 5.7 0.0002 29.5 6.2 59 2-74 4-63 (321)
187 2w25_A Probable transcriptiona 77.2 6.4 0.00022 25.5 5.6 44 6-63 10-53 (150)
188 1qbj_A Protein (double-strande 76.1 5.5 0.00019 24.5 4.7 45 7-65 14-61 (81)
189 2xzm_8 RPS25E,; ribosome, tran 76.0 1.6 5.5E-05 30.6 2.4 22 44-65 76-97 (143)
190 2ijl_A AGR_C_4647P, molybdenum 75.3 3.2 0.00011 27.9 3.7 38 46-83 53-97 (135)
191 3pfi_A Holliday junction ATP-d 75.0 1.8 6.2E-05 31.0 2.6 33 47-80 295-328 (338)
192 3rkx_A Biotin-[acetyl-COA-carb 74.0 7 0.00024 29.4 5.7 60 1-74 1-63 (323)
193 2cfx_A HTH-type transcriptiona 72.4 10 0.00034 24.5 5.5 68 7-89 9-88 (144)
194 2cyy_A Putative HTH-type trans 70.4 9.2 0.00031 24.8 5.0 69 6-89 10-90 (151)
195 1ixc_A CBNR, LYSR-type regulat 68.4 4.2 0.00014 27.5 3.1 37 46-83 30-69 (294)
196 2dbb_A Putative HTH-type trans 68.4 10 0.00034 24.4 4.9 70 6-90 12-93 (151)
197 2v1x_A ATP-dependent DNA helic 67.4 16 0.00054 29.3 6.7 76 5-80 446-534 (591)
198 3hhg_A Transcriptional regulat 65.5 6.8 0.00023 26.6 3.7 37 46-83 32-71 (306)
199 2qc0_A Uncharacterized protein 64.7 5.7 0.00019 30.3 3.5 51 5-70 299-349 (373)
200 1qgp_A Protein (double strande 63.1 8.8 0.0003 23.1 3.5 45 7-65 18-65 (77)
201 2e1c_A Putative HTH-type trans 62.9 19 0.00065 24.2 5.6 70 6-90 30-111 (171)
202 2esn_A Probable transcriptiona 62.3 6.6 0.00023 26.9 3.2 36 47-83 40-78 (310)
203 1qzz_A RDMB, aclacinomycin-10- 62.2 27 0.00094 25.2 6.7 52 10-76 43-96 (374)
204 3i4p_A Transcriptional regulat 61.2 19 0.00064 23.8 5.2 71 6-90 6-90 (162)
205 3isp_A HTH-type transcriptiona 61.2 12 0.00041 25.5 4.4 37 46-84 35-74 (303)
206 3fzv_A Probable transcriptiona 61.0 4.6 0.00016 27.5 2.1 37 47-83 34-73 (306)
207 1b9m_A Protein (mode); DNA-bin 60.9 8.8 0.0003 26.8 3.7 33 50-82 53-92 (265)
208 3szp_A Transcriptional regulat 60.6 7.6 0.00026 25.9 3.2 36 47-83 31-69 (291)
209 1j5y_A Transcriptional regulat 60.2 23 0.00077 24.0 5.6 57 3-74 21-79 (187)
210 3eqx_A FIC domain containing t 59.3 8 0.00027 29.7 3.5 50 6-70 300-349 (373)
211 1z6r_A MLC protein; transcript 59.2 12 0.0004 28.0 4.3 45 6-64 19-63 (406)
212 2hoe_A N-acetylglucosamine kin 59.1 6.1 0.00021 29.5 2.7 43 7-64 24-66 (380)
213 1tw3_A COMT, carminomycin 4-O- 58.7 24 0.00082 25.4 5.8 49 14-76 49-97 (360)
214 3fxq_A LYSR type regulator of 57.5 12 0.0004 25.7 3.8 37 46-83 31-70 (305)
215 2qlz_A Transcription factor PF 55.1 15 0.00051 26.6 4.1 50 8-72 169-218 (232)
216 3i53_A O-methyltransferase; CO 52.6 48 0.0016 23.6 6.6 51 15-79 36-86 (332)
217 1hqc_A RUVB; extended AAA-ATPa 50.3 8.8 0.0003 27.0 2.2 33 47-80 281-313 (324)
218 1i96_V Translation initiation 50.2 8.3 0.00029 24.5 1.9 32 41-72 47-79 (89)
219 2h9b_A HTH-type transcriptiona 49.0 3.6 0.00012 28.6 0.0 35 47-82 31-68 (312)
220 1t6s_A Conserved hypothetical 48.9 28 0.00095 24.1 4.6 45 8-69 99-146 (162)
221 2ip2_A Probable phenazine-spec 48.5 43 0.0015 23.7 5.7 50 15-78 39-88 (334)
222 2gqq_A Leucine-responsive regu 47.2 3.4 0.00011 27.4 -0.4 42 7-62 17-58 (163)
223 3tvt_B PINS, partner of inscut 46.5 3.8 0.00013 23.8 -0.2 26 41-66 13-38 (50)
224 1z05_A Transcriptional regulat 46.1 30 0.001 26.1 4.7 45 6-64 42-86 (429)
225 3mcz_A O-methyltransferase; ad 43.4 37 0.0013 24.3 4.7 51 15-80 54-104 (352)
226 3mz1_A Putative transcriptiona 42.9 5.1 0.00018 26.8 0.0 35 48-83 29-66 (300)
227 1uth_A LYSR-type regulatory pr 41.9 5.4 0.00018 27.8 0.0 35 47-82 44-81 (315)
228 2vn2_A DNAD, chromosome replic 41.7 19 0.00063 23.2 2.6 22 44-65 64-85 (128)
229 2h98_A HTH-type transcriptiona 41.3 5.6 0.00019 27.9 0.0 35 47-82 31-68 (313)
230 4asn_A TUBR; transcription, tu 40.4 36 0.0012 22.1 3.8 39 43-82 46-88 (101)
231 1o57_A PUR operon repressor; p 40.4 35 0.0012 25.2 4.2 78 2-87 6-92 (291)
232 2yx5_A UPF0062 protein MJ1593; 39.4 39 0.0013 20.5 3.7 37 53-90 24-70 (83)
233 3oon_A Outer membrane protein 39.0 21 0.00073 22.4 2.6 24 67-90 24-47 (123)
234 3v32_B Ribonuclease ZC3H12A; r 38.2 34 0.0012 24.3 3.7 36 49-84 85-123 (185)
235 3gwz_A MMCR; methyltransferase 38.0 46 0.0016 24.4 4.6 49 15-77 69-118 (369)
236 2hqs_H Peptidoglycan-associate 36.5 23 0.00079 22.4 2.4 24 67-90 13-36 (118)
237 3dv8_A Transcriptional regulat 36.2 40 0.0014 21.9 3.6 36 45-83 183-218 (220)
238 2fmy_A COOA, carbon monoxide o 35.8 90 0.0031 20.3 5.8 21 44-64 180-200 (220)
239 2r3s_A Uncharacterized protein 35.7 54 0.0019 23.0 4.5 49 15-78 37-85 (335)
240 2xvc_A ESCRT-III, SSO0910; cel 35.4 31 0.001 20.8 2.6 33 17-63 25-57 (59)
241 2yu3_A DNA-directed RNA polyme 35.0 18 0.00063 23.1 1.7 44 8-65 42-87 (95)
242 3td3_A Outer membrane protein 34.8 26 0.00089 22.0 2.5 24 67-90 21-44 (123)
243 1jg5_A GTP cyclohydrolase I fe 34.2 20 0.00069 22.9 1.8 14 48-61 52-65 (83)
244 2key_A Putative phage integras 33.7 23 0.00077 20.7 1.9 21 45-65 79-99 (112)
245 2f96_A Ribonuclease T; RNAse, 33.6 45 0.0015 22.8 3.7 51 7-59 165-217 (224)
246 2z99_A Putative uncharacterize 32.7 50 0.0017 24.1 3.9 40 8-64 105-144 (219)
247 2ife_A Protein (translation in 31.9 18 0.00061 23.5 1.3 28 44-71 61-90 (100)
248 1tig_A IF3-C, translation init 30.9 9.7 0.00033 24.4 -0.1 33 40-72 51-84 (94)
249 2d48_A Interleukin-4; four hel 30.7 19 0.00066 24.7 1.3 14 4-17 47-60 (129)
250 2oxo_A Integrase; DNA-binding 30.6 38 0.0013 18.6 2.5 28 40-67 66-93 (103)
251 2gau_A Transcriptional regulat 30.4 59 0.002 21.3 3.8 24 42-65 191-214 (232)
252 2crq_A Mitochondrial translati 29.9 23 0.0008 23.3 1.6 39 48-86 33-74 (112)
253 3lst_A CALO1 methyltransferase 29.9 46 0.0016 24.1 3.4 50 15-79 53-102 (348)
254 3i4u_A ATP-dependent RNA helic 29.6 28 0.00097 25.4 2.2 30 45-78 17-46 (270)
255 4ev0_A Transcription regulator 28.2 44 0.0015 21.5 2.8 37 45-84 177-213 (216)
256 2cos_A Serine/threonine protei 28.0 12 0.00042 22.1 -0.0 17 46-62 7-23 (54)
257 3ryp_A Catabolite gene activat 27.8 38 0.0013 21.8 2.4 22 44-65 180-201 (210)
258 3cyp_B Chemotaxis protein MOTB 27.5 33 0.0011 22.3 2.0 22 69-90 12-34 (138)
259 2kgw_A Outer membrane protein 27.3 34 0.0012 21.7 2.1 39 49-89 15-53 (129)
260 1al3_A Cys regulon transcripti 27.2 13 0.00045 25.9 0.0 36 47-83 32-71 (324)
261 2kd1_A DNA integration/recombi 27.2 31 0.0011 20.2 1.7 27 42-68 74-100 (118)
262 1oyw_A RECQ helicase, ATP-depe 26.9 1.4E+02 0.0049 23.1 5.9 66 15-80 427-503 (523)
263 2oz6_A Virulence factor regula 26.7 40 0.0014 21.6 2.4 21 44-64 177-197 (207)
264 2xub_A DNA-directed RNA polyme 26.3 56 0.0019 26.0 3.5 61 4-66 102-162 (534)
265 3iwz_A CAP-like, catabolite ac 26.0 42 0.0014 21.9 2.4 22 44-65 200-221 (230)
266 3dp7_A SAM-dependent methyltra 25.5 71 0.0024 23.3 3.8 57 8-79 40-97 (363)
267 2aiz_P Outer membrane protein 25.3 37 0.0013 22.0 2.0 23 68-90 38-60 (134)
268 1x19_A CRTF-related protein; m 25.2 1.1E+02 0.0037 22.1 4.6 50 15-79 62-111 (359)
269 2wvl_A Mannosyl-3-phosphoglyce 24.8 1.8E+02 0.0062 23.1 6.2 56 21-87 325-382 (391)
270 2kob_A Uncharacterized protein 24.1 48 0.0017 18.8 2.2 24 43-66 68-91 (108)
271 3nrw_A Phage integrase/site-sp 23.9 56 0.0019 19.6 2.5 46 19-65 55-100 (117)
272 3lcz_A YCZA, inhibitor of trap 23.8 22 0.00076 20.3 0.6 39 37-84 11-49 (53)
273 3e6c_C CPRK, cyclic nucleotide 23.8 79 0.0027 21.1 3.5 22 44-65 190-211 (250)
274 4g6q_A Putative uncharacterize 23.8 77 0.0026 21.4 3.4 44 8-65 28-71 (182)
275 1avy_A Fibritin, gpwac M; bact 23.6 43 0.0015 20.9 1.9 19 50-68 36-54 (74)
276 2kkv_A Integrase; protein stru 23.5 58 0.002 19.2 2.5 24 43-66 74-97 (121)
277 1whz_A Hypothetical protein; a 23.5 44 0.0015 19.2 1.9 16 48-63 7-22 (70)
278 2k1s_A Inner membrane lipoprot 23.3 43 0.0015 21.9 2.0 23 68-90 42-64 (149)
279 3lys_A Prophage PI2 protein 01 23.3 59 0.002 19.1 2.5 22 45-66 76-97 (112)
280 3v33_A Ribonuclease ZC3H12A; r 23.0 61 0.0021 23.7 2.9 37 49-85 85-124 (223)
281 2zcw_A TTHA1359, transcription 22.5 83 0.0028 20.2 3.3 22 44-65 159-180 (202)
282 2kiw_A INT protein; alpha, str 22.4 56 0.0019 18.8 2.2 24 44-67 68-91 (111)
283 2p6r_A Afuhel308 helicase; pro 22.3 64 0.0022 25.8 3.2 32 45-78 452-483 (702)
284 2ve8_A FTSK, DNA translocase F 22.2 59 0.002 20.0 2.3 37 15-65 22-58 (73)
285 2va8_A SSO2462, SKI2-type heli 22.1 52 0.0018 26.2 2.6 30 48-78 473-502 (715)
286 2kj8_A Putative prophage CPS-5 21.7 66 0.0023 19.0 2.5 22 44-65 74-95 (118)
287 2hgc_A YJCQ protein; SR346, st 21.6 73 0.0025 20.6 2.8 36 46-81 31-75 (102)
288 2kj5_A Phage integrase; GFT PS 21.6 61 0.0021 18.8 2.3 23 44-66 75-97 (116)
289 3kcc_A Catabolite gene activat 21.5 60 0.0021 22.1 2.5 21 44-64 230-250 (260)
290 2dgb_A Hypothetical protein PU 21.5 39 0.0013 20.6 1.4 41 45-90 21-70 (84)
291 4i1u_A Dephospho-COA kinase; s 21.3 83 0.0028 22.2 3.3 41 5-54 39-79 (210)
292 2v9v_A Selenocysteine-specific 20.8 1.5E+02 0.0051 18.3 4.2 40 14-65 84-123 (135)
293 1ify_A HHR23A, UV excision rep 20.7 67 0.0023 17.6 2.2 19 44-62 4-22 (49)
294 2cp8_A NEXT to BRCA1 gene 1 pr 20.7 32 0.0011 20.1 0.8 17 49-65 10-26 (54)
295 2va1_A Uridylate kinase; UMPK, 20.4 42 0.0014 23.8 1.6 48 36-87 4-57 (256)
296 2khq_A Integrase; all-alpha, s 20.3 69 0.0024 18.3 2.3 23 44-66 71-93 (110)
297 3d0s_A Transcriptional regulat 20.1 1.1E+02 0.0036 20.0 3.5 22 44-65 190-211 (227)
No 1
>3iz6_S 40S ribosomal protein S19 (S19E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=5.1e-45 Score=259.84 Aligned_cols=87 Identities=74% Similarity=1.223 Sum_probs=84.9
Q ss_pred hhHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHH
Q 034587 3 ELVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQV 82 (90)
Q Consensus 3 ~r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~i 82 (90)
+||||||||||++||+||++|+++|||+||||++|+||++|||+|||+||||||++||||+++++||+|||+||+|||+|
T Consensus 58 ~RaASi~R~lYlrg~vGV~~lrk~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~Vek~~~gGR~lT~~G~~~LD~i 137 (146)
T 3iz6_S 58 TRAASIARKIYLRQGIGVGGFQKIYGGRQRNGSRPPHFCKSSGAISRNILQQLQKMGIIDVDPKGGRLITSQGRRDLDQV 137 (146)
T ss_dssp HHHHHHHHHHHHHCSBCHHHHHSSSCCCCCCCSSCCCCCCCCHHHHHHHHHHHHHHTSEEEETTTEEEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHCCCCCCCCCCCcccCCCcHHHHHHHHHHHHCCCeEecCCCCcEECHhHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHhhcC
Q 034587 83 AGRIVVA 89 (90)
Q Consensus 83 A~~v~~~ 89 (90)
|.+|+++
T Consensus 138 A~~v~~~ 144 (146)
T 3iz6_S 138 AGRVDVT 144 (146)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9999753
No 2
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=100.00 E-value=3.6e-45 Score=260.12 Aligned_cols=87 Identities=45% Similarity=0.866 Sum_probs=85.0
Q ss_pred hhHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHH
Q 034587 3 ELVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQV 82 (90)
Q Consensus 3 ~r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~i 82 (90)
+||||||||||++||+||++|+++|||+||||++|+||++|||+|||+||||||++|||++++++||+|||+||+|||+|
T Consensus 56 ~RaASi~R~lYl~g~vGV~~lrk~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~vek~~~~GR~lT~~G~~~LD~i 135 (144)
T 3u5c_T 56 KRAASVARHIYMRKQVGVGKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISPKGGRRISENGQRDLDRI 135 (144)
T ss_dssp HHHHHHHHHHHTSSBCCHHHHHHHHCCEEEETTEEEEECCCCHHHHHHHHHHHHHTTSEECCSSSSCEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHCCCCCCCCCCccccccCcHHHHHHHHHHHHCCCeeecCCCCcEECHhHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999989999999999999999
Q ss_pred HHHhhcC
Q 034587 83 AGRIVVA 89 (90)
Q Consensus 83 A~~v~~~ 89 (90)
|.+|+++
T Consensus 136 A~~v~~~ 142 (144)
T 3u5c_T 136 AAQTLEE 142 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHhc
Confidence 9999864
No 3
>2xzm_T RPS19E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_T
Probab=100.00 E-value=1.3e-43 Score=254.64 Aligned_cols=86 Identities=28% Similarity=0.543 Sum_probs=84.0
Q ss_pred hhHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCC-----CeeeCcchHh
Q 034587 3 ELVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG-----GRRITSSGQR 77 (90)
Q Consensus 3 ~r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~-----GR~lT~~G~~ 77 (90)
+|||||||||||+||+||++|+++|||+||||++|+||++|||+|||+||||||++||||+++++ ||+|||+||+
T Consensus 59 iRaASi~R~lYlrg~vGV~~lrk~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~Vek~~~g~~~k~GR~lT~~G~~ 138 (155)
T 2xzm_T 59 IRTAALARKVYLKPHTGISTLKHIFGSNKDRGNLRNKHQACHGKILRWALKSLEDLKIIRKDKNSATKKFSRVITKEGMT 138 (155)
T ss_dssp HHHHHHHHHHHHSTTCCHHHHHHHTCCEECCSSSCCEECCCCHHHHHHHHHHHHHTTSEEECSSCSSSTTCEEECHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCCCCCCCCCCCcccCCCcHHHHHHHHHHHHCCCEeecCCCCcCCCCCEECHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999877 9999999999
Q ss_pred hHHHHHHHhhc
Q 034587 78 DLDQVAGRIVV 88 (90)
Q Consensus 78 ~lD~iA~~v~~ 88 (90)
|||+||.+|+.
T Consensus 139 ~LDriA~~i~~ 149 (155)
T 2xzm_T 139 ELNRIATQIAI 149 (155)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999999975
No 4
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=99.95 E-value=6.8e-28 Score=170.66 Aligned_cols=87 Identities=36% Similarity=0.605 Sum_probs=80.2
Q ss_pred hhhHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHH
Q 034587 2 SELVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQ 81 (90)
Q Consensus 2 ~~r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~ 81 (90)
..++|+++|++|++|+.|+..|++.|||+||||++|+||++.|+++||.+||+||++|||++.+++|+.+|+.|+++||+
T Consensus 52 y~ria~~lr~~i~~g~~G~~~La~~~gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~~~~G~~Vt~~~~~~l~~ 131 (150)
T 2v7f_A 52 YYRVASILRRVYLDGPVGIERLRTYYGGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKVPGKGRVITPKGRSFLDK 131 (150)
T ss_dssp HHHHHHHHHHHHHHCSBCHHHHHHHHCC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHCCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEeCCCceEECCCCHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred HHHHhhc
Q 034587 82 VAGRIVV 88 (90)
Q Consensus 82 iA~~v~~ 88 (90)
||.+|++
T Consensus 132 ia~~i~~ 138 (150)
T 2v7f_A 132 IATELKK 138 (150)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999875
No 5
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=97.66 E-value=0.00013 Score=46.93 Aligned_cols=63 Identities=14% Similarity=0.096 Sum_probs=51.7
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHHHH
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 84 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~iA~ 84 (90)
...||+.++ .+ +|...|+..-|=. -+.++..+..|++.|||++.. +|-.||++|...|+.+..
T Consensus 10 i~~IL~~i~-~~-~~~t~La~~~~ls--------------~~~~~~~l~~L~~~GLI~~~~-~~~~LT~kG~~~l~~l~~ 72 (95)
T 1r7j_A 10 IQAILEACK-SG-SPKTRIMYGANLS--------------YALTGRYIKMLMDLEIIRQEG-KQYMLTKKGEELLEDIRK 72 (95)
T ss_dssp HHHHHHHHT-TC-BCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHHHHHH
T ss_pred HHHHHHHHH-cC-CCHHHHHHHhCcC--------------HHHHHHHHHHHHHCCCeEEEC-CeeEEChhHHHHHHHHHH
Confidence 467888887 45 9999998876653 379999999999999999885 689999999987776543
No 6
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=97.57 E-value=0.00015 Score=45.02 Aligned_cols=70 Identities=11% Similarity=0.066 Sum_probs=54.9
Q ss_pred hhHHHHHHHHhhcC-CCchhHHHHHhcCCCCCCCCCCccccCchhH-HHHHHHHHHhCCcccccCCCCe----eeCcchH
Q 034587 3 ELVTSMARKIYLRQ-GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAI-ARHILQQLQNMNIIDIEPKGGR----RITSSGQ 76 (90)
Q Consensus 3 ~r~ASi~RklYl~g-~vGV~~Lr~~YGg~krrG~~P~h~~~asg~i-iR~~LqqLE~~glV~k~~~~GR----~lT~~G~ 76 (90)
.|.-.++..++-.+ ++.+..|++..|-. .+- +-.+++.||+.|||+.++.++| .||++|+
T Consensus 15 ~~~l~~L~~l~~~~~~~t~~eLa~~l~is--------------~~t~vs~~l~~Le~~Glv~~~~~drR~~~~~LT~~G~ 80 (95)
T 2pg4_A 15 IRILPTLLEFEKKGYEPSLAEIVKASGVS--------------EKTFFMGLKDRLIRAGLVKEETLSYRVKTLKLTEKGR 80 (95)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHCCC--------------HHHHHTTHHHHHHHTTSEEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHCCC--------------chHHHHHHHHHHHHCCCeecCCCCCCeEEEEECHhHH
Confidence 35566777777777 89999999988753 245 7778999999999996654444 6999999
Q ss_pred hhHHHHHHHh
Q 034587 77 RDLDQVAGRI 86 (90)
Q Consensus 77 ~~lD~iA~~v 86 (90)
..++.+....
T Consensus 81 ~~~~~~~~~~ 90 (95)
T 2pg4_A 81 RLAECLEKCR 90 (95)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999886653
No 7
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=97.52 E-value=0.0004 Score=44.87 Aligned_cols=69 Identities=7% Similarity=0.080 Sum_probs=55.1
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~ 77 (90)
.-..|+..|+-.+++.+..|+...|-. .+-+-.+++.||+.|||+..+ .++| .||++|+.
T Consensus 32 ~q~~iL~~l~~~~~~t~~eLa~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~ 97 (145)
T 3g3z_A 32 NLFAVLYTLATEGSRTQKHIGEKWSLP--------------KQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSLTETGKA 97 (145)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEECHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEeeccCCCCCceeeeeEChhHHH
Confidence 345788899999999999999988753 256778999999999999754 3444 49999999
Q ss_pred hHHHHHHHh
Q 034587 78 DLDQVAGRI 86 (90)
Q Consensus 78 ~lD~iA~~v 86 (90)
.++.+...+
T Consensus 98 ~~~~~~~~~ 106 (145)
T 3g3z_A 98 YAAPLTESA 106 (145)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876543
No 8
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=97.51 E-value=0.00042 Score=45.21 Aligned_cols=68 Identities=15% Similarity=0.150 Sum_probs=54.7
Q ss_pred hhHHHHHHHHhh----cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhh
Q 034587 3 ELVTSMARKIYL----RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRD 78 (90)
Q Consensus 3 ~r~ASi~RklYl----~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~ 78 (90)
.....+++.||. .+++.+..|+...|-. .+-++.+|+.||+.|||+..+.++-.||++|+..
T Consensus 4 ~~~~~~L~~i~~l~~~~~~~~~~ela~~l~vs--------------~~tvs~~l~~Le~~Glv~r~~~~~~~LT~~g~~~ 69 (142)
T 1on2_A 4 PSMEMYIEQIYMLIEEKGYARVSDIAEALAVH--------------PSSVTKMVQKLDKDEYLIYEKYRGLVLTSKGKKI 69 (142)
T ss_dssp HHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEEEETTTEEEECHHHHHH
T ss_pred hHHHHHHHHHHHHHhhcCCCCHHHHHHHhCCC--------------HHHHHHHHHHHHHCCCEEEeeCceEEEchhHHHH
Confidence 344456666663 5899999999998753 3688999999999999998876778999999998
Q ss_pred HHHHHH
Q 034587 79 LDQVAG 84 (90)
Q Consensus 79 lD~iA~ 84 (90)
++.+..
T Consensus 70 ~~~~~~ 75 (142)
T 1on2_A 70 GKRLVY 75 (142)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 9
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=97.49 E-value=0.00048 Score=44.68 Aligned_cols=68 Identities=15% Similarity=0.151 Sum_probs=55.1
Q ss_pred hhhHHHHHHHHhh----cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHh
Q 034587 2 SELVTSMARKIYL----RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQR 77 (90)
Q Consensus 2 ~~r~ASi~RklYl----~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~ 77 (90)
+.....+++.||. .+++.+..|+...|-. .+-++.+|+.||+.|||+..+ ++-.||++|+.
T Consensus 12 t~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is--------------~~tv~~~l~~Le~~Gli~r~~-~~~~Lt~~g~~ 76 (139)
T 2x4h_A 12 SRREFSYLLTIKRYNDSGEGAKINRIAKDLKIA--------------PSSVFEEVSHLEEKGLVKKKE-DGVWITNNGTR 76 (139)
T ss_dssp CHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEET-TEEEECHHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCC--------------hHHHHHHHHHHHHCCCEEecC-CeEEEChhHHH
Confidence 3445567777765 5789999999998753 368999999999999999887 68899999999
Q ss_pred hHHHHHH
Q 034587 78 DLDQVAG 84 (90)
Q Consensus 78 ~lD~iA~ 84 (90)
..+.+..
T Consensus 77 ~~~~~~~ 83 (139)
T 2x4h_A 77 SINYLIK 83 (139)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876654
No 10
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=97.49 E-value=0.00035 Score=46.34 Aligned_cols=62 Identities=18% Similarity=0.190 Sum_probs=51.3
Q ss_pred HHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHHHH
Q 034587 9 ARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 84 (90)
Q Consensus 9 ~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~iA~ 84 (90)
+..++-.+++.+..|+..+|-. .+-++.+|+.||+.|||+..+..|-.||+.|+..++.+..
T Consensus 46 ~~~l~~~~~~~~~~la~~l~vs--------------~~tvs~~l~~Le~~Glv~r~~~~~~~lT~~g~~~~~~~~~ 107 (155)
T 2h09_A 46 SDLIREVGEARQVDMAARLGVS--------------QPTVAKMLKRLATMGLIEMIPWRGVFLTAEGEKLAQESRE 107 (155)
T ss_dssp HHHHHHHSCCCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTCEEEETTTEEEECHHHHHHHHHHHH
T ss_pred HHHHHhCCCcCHHHHHHHhCcC--------------HHHHHHHHHHHHHCCCEEEecCCceEEChhHHHHHHHHHH
Confidence 3344556889999999998764 3689999999999999998877788999999998887654
No 11
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=97.48 E-value=0.0006 Score=43.70 Aligned_cols=67 Identities=13% Similarity=0.093 Sum_probs=53.4
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~ 77 (90)
.-..|+..|+ .+++.+..|+...|- +.+-+..+|+.||+.|||+..+ .++| .||++|+.
T Consensus 38 ~~~~iL~~l~-~~~~~~~ela~~l~~--------------s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~~lT~~G~~ 102 (146)
T 2gxg_A 38 LDFLVLRATS-DGPKTMAYLANRYFV--------------TQSAITASVDKLEEMGLVVRVRDREDRRKILIEITEKGLE 102 (146)
T ss_dssp HHHHHHHHHT-TSCBCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHH
T ss_pred HHHHHHHHHh-cCCcCHHHHHHHhCC--------------CchhHHHHHHHHHHCCCEEeecCCCCCceEEEEECHHHHH
Confidence 3456888899 999999999998864 3367888999999999998654 2333 68999999
Q ss_pred hHHHHHHH
Q 034587 78 DLDQVAGR 85 (90)
Q Consensus 78 ~lD~iA~~ 85 (90)
.++.+...
T Consensus 103 ~~~~~~~~ 110 (146)
T 2gxg_A 103 TFNKGIEI 110 (146)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 12
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=97.47 E-value=0.00076 Score=44.65 Aligned_cols=68 Identities=22% Similarity=0.207 Sum_probs=54.9
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHhh
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRD 78 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~ 78 (90)
-..||..|+-.+++.+..|+...|-.+ +-+-.+++.||+.|||++.+ ..+| .||++|+..
T Consensus 48 q~~iL~~l~~~~~~t~~eLa~~l~~~~--------------~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~ 113 (162)
T 3k0l_A 48 QFTALSVLAAKPNLSNAKLAERSFIKP--------------QSANKILQDLLANGWIEKAPDPTHGRRILVTVTPSGLDK 113 (162)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTSCG--------------GGHHHHHHHHHHTTSEEEEECCSSSCCEEEEECHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCH--------------HHHHHHHHHHHHCcCeEecCCCCcCCeeEeEECHhHHHH
Confidence 356889999999999999999887543 45778999999999998654 3444 599999999
Q ss_pred HHHHHHHh
Q 034587 79 LDQVAGRI 86 (90)
Q Consensus 79 lD~iA~~v 86 (90)
++++...+
T Consensus 114 ~~~~~~~~ 121 (162)
T 3k0l_A 114 LNQCNQVV 121 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876543
No 13
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=97.46 E-value=0.00058 Score=44.08 Aligned_cols=69 Identities=17% Similarity=0.173 Sum_probs=51.4
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CCe----eeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~ 77 (90)
.-..||..|+-.+++.+..|+...|-.+ +-+-.+++.||+.|||+..++ ++| .||++|+.
T Consensus 38 ~~~~vL~~l~~~~~~t~~eLa~~l~~~~--------------~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~~ 103 (142)
T 3ech_A 38 PDVHVLKLIDEQRGLNLQDLGRQMCRDK--------------ALITRKIRELEGRNLVRRERNPSDQRSFQLFLTDEGLA 103 (142)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHC-----------------CHHHHHHHHHHHTTSEEC----------CCEECHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCH--------------HHHHHHHHHHHHCCCEeeccCCCCCCeeeeEECHHHHH
Confidence 3457889999999999999999887543 467789999999999987552 344 59999999
Q ss_pred hHHHHHHHh
Q 034587 78 DLDQVAGRI 86 (90)
Q Consensus 78 ~lD~iA~~v 86 (90)
.++.+...+
T Consensus 104 ~~~~~~~~~ 112 (142)
T 3ech_A 104 IHLHAELIM 112 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876543
No 14
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=97.43 E-value=0.00082 Score=42.80 Aligned_cols=69 Identities=12% Similarity=0.124 Sum_probs=53.5
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~ 77 (90)
.-..|+..|+-.+++.+..|+...|-. .+-+-.+++.||+.|||+..+ +++| .||++|+.
T Consensus 35 ~~~~iL~~l~~~~~~~~~~la~~l~~~--------------~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~ 100 (138)
T 1jgs_A 35 AQFKVLCSIRCAACITPVELKKVLSVD--------------LGALTRMLDRLVCKGWVERLPNPNDKRGVLVKLTTGGAA 100 (138)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEECTTCSSCEEEEECHHHHH
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHCCC--------------hHHHHHHHHHHHHCCCEEecCCcccCceeEeEEChhHHH
Confidence 345678888888999999999877643 256778999999999998653 3444 59999999
Q ss_pred hHHHHHHHh
Q 034587 78 DLDQVAGRI 86 (90)
Q Consensus 78 ~lD~iA~~v 86 (90)
.++++...+
T Consensus 101 ~~~~~~~~~ 109 (138)
T 1jgs_A 101 ICEQCHQLV 109 (138)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876543
No 15
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=97.42 E-value=0.00046 Score=44.48 Aligned_cols=68 Identities=13% Similarity=0.135 Sum_probs=53.8
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHhh
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRD 78 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~ 78 (90)
-..|+..|+-.+++.+..|+...|-. .+-+-.+++.||+.|||++.+ .++| .||++|+..
T Consensus 39 ~~~iL~~l~~~~~~t~~eLa~~l~~~--------------~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~ 104 (143)
T 3oop_A 39 QWSVLEGIEANEPISQKEIALWTKKD--------------TPTVNRIVDVLLRKELIVREISTEDRRISLLSLTDKGRKE 104 (143)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEC----CCSCEEEECHHHHHH
T ss_pred HHHHHHHHHHcCCcCHHHHHHHHCCC--------------HhhHHHHHHHHHHCCCeeccCCCccCceeeeeECHHHHHH
Confidence 45688888888999999999988653 356778999999999998655 3454 499999999
Q ss_pred HHHHHHHh
Q 034587 79 LDQVAGRI 86 (90)
Q Consensus 79 lD~iA~~v 86 (90)
++.+...+
T Consensus 105 ~~~~~~~~ 112 (143)
T 3oop_A 105 TTELRDIV 112 (143)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876553
No 16
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=97.38 E-value=0.00026 Score=44.15 Aligned_cols=70 Identities=19% Similarity=0.275 Sum_probs=53.6
Q ss_pred hhhHHHHHHHHhhc-CC---CchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCe----eeCc
Q 034587 2 SELVTSMARKIYLR-QG---LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR----RITS 73 (90)
Q Consensus 2 ~~r~ASi~RklYl~-g~---vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR----~lT~ 73 (90)
+.+...|+-.+|-. ++ +.+..|+...|-. .+-+-.+|+.||+.||| .++..+| .||+
T Consensus 11 ~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~--------------~~tvs~~l~~Le~~Glv-~~~~d~R~~~v~LT~ 75 (95)
T 2qvo_A 11 KEKALEILMTIYYESLGGNDVYIQYIASKVNSP--------------HSYVWLIIKKFEEAKMV-ECELEGRTKIIRLTD 75 (95)
T ss_dssp CHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSC--------------HHHHHHHHHHHHHTTSE-EEEEETTEEEEEECH
T ss_pred chhHHHHHHHHHHccCCCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCcCc-cCCCCCCeEEEEECh
Confidence 45666777777653 45 8899999987653 25677789999999999 4444566 7999
Q ss_pred chHhhHHHHHHHh
Q 034587 74 SGQRDLDQVAGRI 86 (90)
Q Consensus 74 ~G~~~lD~iA~~v 86 (90)
+|+..++++...+
T Consensus 76 ~G~~~~~~~~~~~ 88 (95)
T 2qvo_A 76 KGQKIAQQIKSII 88 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 9999999887654
No 17
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=97.36 E-value=0.00084 Score=42.93 Aligned_cols=69 Identities=17% Similarity=0.255 Sum_probs=53.5
Q ss_pred hHHHHHHHHhhcC--CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcch
Q 034587 4 LVTSMARKIYLRQ--GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSG 75 (90)
Q Consensus 4 r~ASi~RklYl~g--~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G 75 (90)
--..|+..|+-.+ ++.+..|+...|-. .+-+-.+++.||+.|||+..+ .++| .||++|
T Consensus 32 ~~~~vL~~l~~~~~~~~t~~ela~~l~~~--------------~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~LT~~G 97 (139)
T 3eco_A 32 EQGHTLGYLYAHQQDGLTQNDIAKALQRT--------------GPTVSNLLRNLERKKLIYRYVDAQDTRRKNIGLTTSG 97 (139)
T ss_dssp HHHHHHHHHHHSTTTCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEECCC--CCEEEEECHHH
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHHHhCCC--------------cccHHHHHHHHHHCCCEeecCCCCCCCeeeeEECHHH
Confidence 3457888899887 99999999988753 256778999999999998654 3455 499999
Q ss_pred HhhHHHHHHHh
Q 034587 76 QRDLDQVAGRI 86 (90)
Q Consensus 76 ~~~lD~iA~~v 86 (90)
+..++.+...+
T Consensus 98 ~~~~~~~~~~~ 108 (139)
T 3eco_A 98 IKLVEAFTSIF 108 (139)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999876543
No 18
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=97.36 E-value=0.00055 Score=44.41 Aligned_cols=68 Identities=7% Similarity=0.084 Sum_probs=53.0
Q ss_pred HHHHHHHHhhc--CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc--CCCCe----eeCcchH
Q 034587 5 VTSMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE--PKGGR----RITSSGQ 76 (90)
Q Consensus 5 ~ASi~RklYl~--g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~--~~~GR----~lT~~G~ 76 (90)
-..||..||-. +++.+..|+...|-. .+-+-.+|+.||+.|||++. +.++| .||++|+
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i~LT~~G~ 104 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNYK--------------QPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQR 104 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSSH--------------HHHHHHHHHHHHHTTSSCCBCCSSSSCCCEEECCSHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHH
Confidence 34678888887 888999999977743 24667789999999999874 34455 6999999
Q ss_pred hhHHHHHHHh
Q 034587 77 RDLDQVAGRI 86 (90)
Q Consensus 77 ~~lD~iA~~v 86 (90)
..++++...+
T Consensus 105 ~~~~~~~~~~ 114 (127)
T 2frh_A 105 KKIESLLSRV 114 (127)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876654
No 19
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=97.33 E-value=0.00085 Score=40.85 Aligned_cols=70 Identities=17% Similarity=0.146 Sum_probs=55.6
Q ss_pred hhHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC-CCe----eeCcchHh
Q 034587 3 ELVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK-GGR----RITSSGQR 77 (90)
Q Consensus 3 ~r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~-~GR----~lT~~G~~ 77 (90)
..-..|+..|+-.+++.+..|+...|- +.+-+...|+.||+.|||+..+. ++| .+|+.|+.
T Consensus 20 ~~~~~il~~l~~~~~~s~~ela~~l~i--------------s~~tv~~~l~~L~~~glv~~~~~~~~r~~~~~~t~~g~~ 85 (109)
T 1sfx_A 20 PSDVRIYSLLLERGGMRVSEIARELDL--------------SARFVRDRLKVLLKRGFVRREIVEKGWVGYIYSAEKPEK 85 (109)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEEESSSEEEEEEECCHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEEeecCCceEEEEecCcHHH
Confidence 344668888888899999999998864 34689999999999999986543 455 69999999
Q ss_pred hHHHHHHHh
Q 034587 78 DLDQVAGRI 86 (90)
Q Consensus 78 ~lD~iA~~v 86 (90)
.++.+...+
T Consensus 86 ~~~~~~~~~ 94 (109)
T 1sfx_A 86 VLKEFKSSI 94 (109)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 988776543
No 20
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=97.32 E-value=0.0012 Score=42.02 Aligned_cols=68 Identities=9% Similarity=0.092 Sum_probs=53.1
Q ss_pred hHHHHHHHHhhcC--CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcch
Q 034587 4 LVTSMARKIYLRQ--GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSG 75 (90)
Q Consensus 4 r~ASi~RklYl~g--~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G 75 (90)
.-..|+..|+-.+ ++.+..|+...|-. .+-+..+++.||+.|||+..+ +++| .||++|
T Consensus 35 ~~~~iL~~l~~~~~~~~~~~ela~~l~~~--------------~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i~lT~~G 100 (141)
T 3bro_A 35 TQMTIIDYLSRNKNKEVLQRDLESEFSIK--------------SSTATVLLQRMEIKKLLYRKVSGKDSRQKCLKLTKKA 100 (141)
T ss_dssp HHHHHHHHHHHTTTSCCBHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHH
T ss_pred HHHHHHHHHHHCCCCCcCHHHHHHHHCCC--------------cchHHHHHHHHHHCCCEEeeCCCcCCCeeeeEECHHH
Confidence 3456788888887 89999999988753 357888999999999998654 3333 389999
Q ss_pred HhhHHHHHHH
Q 034587 76 QRDLDQVAGR 85 (90)
Q Consensus 76 ~~~lD~iA~~ 85 (90)
+..++.+...
T Consensus 101 ~~~~~~~~~~ 110 (141)
T 3bro_A 101 NKLETIILSY 110 (141)
T ss_dssp HTTHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876554
No 21
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=97.30 E-value=0.0011 Score=42.06 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=54.5
Q ss_pred hhHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchH
Q 034587 3 ELVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQ 76 (90)
Q Consensus 3 ~r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~ 76 (90)
..-..|+..|+-.+++.+..|+...|-. .+-+..+++.||+.|||+..+ .++| .||++|+
T Consensus 29 ~~~~~iL~~l~~~~~~~~~ela~~l~~s--------------~~tvs~~l~~L~~~glv~~~~~~~d~R~~~~~lT~~G~ 94 (138)
T 3bpv_A 29 DAQVACLLRIHREPGIKQDELATFFHVD--------------KGTIARTLRRLEESGFIEREQDPENRRRYILEVTRRGE 94 (138)
T ss_dssp HHHHHHHHHHHHSTTCBHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEeecCCCCceeEEeeECHhHH
Confidence 3445688888888999999999988642 367888999999999999754 2333 5999999
Q ss_pred hhHHHHHHH
Q 034587 77 RDLDQVAGR 85 (90)
Q Consensus 77 ~~lD~iA~~ 85 (90)
..++.+...
T Consensus 95 ~~~~~~~~~ 103 (138)
T 3bpv_A 95 EIIPLILKV 103 (138)
T ss_dssp HTHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 22
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=97.30 E-value=0.00087 Score=43.54 Aligned_cols=67 Identities=13% Similarity=0.220 Sum_probs=52.9
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccc--cC--CCCe----eeCcchH
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI--EP--KGGR----RITSSGQ 76 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k--~~--~~GR----~lT~~G~ 76 (90)
-..|+..|+-.+++.+..|+...|-. .+-+-.+++.||+.|||+. .+ .++| .||++|+
T Consensus 43 ~~~iL~~l~~~~~~t~~eLa~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~LT~~G~ 108 (154)
T 2qww_A 43 QLAMINVIYSTPGISVADLTKRLIIT--------------GSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKLSKKGE 108 (154)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEEECHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeEECHHHH
Confidence 35688888889999999999988642 3567789999999999998 33 3344 5999999
Q ss_pred hhHHHHHHH
Q 034587 77 RDLDQVAGR 85 (90)
Q Consensus 77 ~~lD~iA~~ 85 (90)
..++++...
T Consensus 109 ~~~~~~~~~ 117 (154)
T 2qww_A 109 DLSKRSTAN 117 (154)
T ss_dssp HHHHHHHSC
T ss_pred HHHHHHHhh
Confidence 998877544
No 23
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=97.30 E-value=0.0013 Score=42.42 Aligned_cols=69 Identities=12% Similarity=0.163 Sum_probs=52.7
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~ 77 (90)
.-..|+..|+-.+++.+..|+...|-. .+-+-.+|+.||+.|||+..+ .++| .||++|+.
T Consensus 43 ~~~~iL~~l~~~~~~t~~ela~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~ 108 (150)
T 2rdp_A 43 PQFVALQWLLEEGDLTVGELSNKMYLA--------------CSTTTDLVDRMERNGLVARVRDEHDRRVVRIRLLEKGER 108 (150)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEECCC---CEEEEECHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCCC--------------chhHHHHHHHHHHCCCeeecCCCCCcceeEeEECHhHHH
Confidence 345678888888999999999988642 356788999999999998653 3343 59999999
Q ss_pred hHHHHHHHh
Q 034587 78 DLDQVAGRI 86 (90)
Q Consensus 78 ~lD~iA~~v 86 (90)
.++.+...+
T Consensus 109 ~~~~~~~~~ 117 (150)
T 2rdp_A 109 IIEEVIEKR 117 (150)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998876543
No 24
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=97.29 E-value=0.00078 Score=44.02 Aligned_cols=68 Identities=18% Similarity=0.196 Sum_probs=52.2
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHhh
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRD 78 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~ 78 (90)
-..||..|+-.+++.+..|+...|-. .+-+-.+++.||+.|||+..+ .++| .||++|+..
T Consensus 43 q~~iL~~l~~~~~~~~~eLa~~l~~~--------------~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~~ 108 (149)
T 4hbl_A 43 QYLVMLTLWEENPQTLNSIGRHLDLS--------------SNTLTPMLKRLEQSGWVKRERQQSDKRQLIITLTDNGQQQ 108 (149)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHTCC--------------HHHHHHHHHHHHHHTSEEC---------CEEEECSHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEeeCCCCCCcceeeeeECHHHHHH
Confidence 45688888889999999999988653 357778999999999998654 3455 499999999
Q ss_pred HHHHHHHh
Q 034587 79 LDQVAGRI 86 (90)
Q Consensus 79 lD~iA~~v 86 (90)
++.+...+
T Consensus 109 ~~~~~~~~ 116 (149)
T 4hbl_A 109 QEAVFEAI 116 (149)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876654
No 25
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=97.28 E-value=0.001 Score=44.52 Aligned_cols=67 Identities=15% Similarity=0.225 Sum_probs=53.1
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHhh
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRD 78 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~ 78 (90)
-..||..|+-.+++.+..|+...|-. .+-+-.+++.||+.|||++.+ .++| .||++|+..
T Consensus 47 ~~~iL~~L~~~~~~t~~eLa~~l~is--------------~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G~~~ 112 (168)
T 2nyx_A 47 QFRTLVILSNHGPINLATLATLLGVQ--------------PSATGRMVDRLVGAELIDRLPHPTSRRELLAALTKRGRDV 112 (168)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHhCCC--------------HHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHHHH
Confidence 34678888888999999999988653 356777999999999998643 3344 599999999
Q ss_pred HHHHHHH
Q 034587 79 LDQVAGR 85 (90)
Q Consensus 79 lD~iA~~ 85 (90)
++++...
T Consensus 113 ~~~~~~~ 119 (168)
T 2nyx_A 113 VRQVTEH 119 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9886554
No 26
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=97.28 E-value=0.00094 Score=43.95 Aligned_cols=67 Identities=15% Similarity=0.174 Sum_probs=53.0
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHhhH
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDL 79 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~l 79 (90)
..||..|+-.+++.+..|+...|-.+ +-+-.+++.||+.|||++.+ .++| .||++|+..+
T Consensus 53 ~~vL~~l~~~~~~t~~eLa~~l~~~~--------------~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~~ 118 (159)
T 3s2w_A 53 FPFLMRLYREDGINQESLSDYLKIDK--------------GTTARAIQKLVDEGYVFRQRDEKDRRSYRVFLTEKGKKLE 118 (159)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSEEEEECC---CCEEEEECHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCH--------------HHHHHHHHHHHHCCCEEEecCCCCCCeeEEEECHHHHHHH
Confidence 56888888899999999999887542 57788999999999998654 3444 4999999999
Q ss_pred HHHHHHh
Q 034587 80 DQVAGRI 86 (90)
Q Consensus 80 D~iA~~v 86 (90)
+.+...+
T Consensus 119 ~~~~~~~ 125 (159)
T 3s2w_A 119 PDMKKIA 125 (159)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876553
No 27
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=97.26 E-value=0.00084 Score=41.58 Aligned_cols=69 Identities=12% Similarity=0.031 Sum_probs=51.6
Q ss_pred hHHHHHHHHhhcCCCchhHH----HHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCC---CeeeCcchH
Q 034587 4 LVTSMARKIYLRQGLGVGSF----RRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG---GRRITSSGQ 76 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~L----r~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~---GR~lT~~G~ 76 (90)
.-..|+..|+-.+++.+..| +...|- +.+-+-.+|+.||+.|||++.++. .-.||++|+
T Consensus 9 ~q~~iL~~l~~~~~~~~~el~~~la~~l~i--------------s~~tvs~~l~~Le~~gli~r~~~~r~~~~~LT~~G~ 74 (99)
T 1tbx_A 9 PEAIVLAYLYDNEGIATYDLYKKVNAEFPM--------------STATFYDAKKFLIQEGFVKERQERGEKRLYLTEKGK 74 (99)
T ss_dssp HHHHHHHHHTTCTTCBHHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHHHHcCC--------------CHHHHHHHHHHHHHCCCEEEEecCCceEEEECHHHH
Confidence 34567888888889999999 553332 335778899999999999876532 235999999
Q ss_pred hhHHHHHHHh
Q 034587 77 RDLDQVAGRI 86 (90)
Q Consensus 77 ~~lD~iA~~v 86 (90)
..++.+...+
T Consensus 75 ~~~~~~~~~~ 84 (99)
T 1tbx_A 75 LFAISLKTAI 84 (99)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 28
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=97.22 E-value=0.00099 Score=42.72 Aligned_cols=68 Identities=9% Similarity=0.117 Sum_probs=53.1
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CCe----eeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~ 77 (90)
.-..|+..|+-.+++.+..|+...|-.+ +-+..+|+.||+.|||+..++ ++| .||++|+.
T Consensus 38 ~~~~iL~~l~~~~~~~~~ela~~l~~~~--------------~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~lT~~G~~ 103 (142)
T 2bv6_A 38 PQFLVLTILWDESPVNVKKVVTELALDT--------------GTVSPLLKRMEQVDLIKRERSEVDQREVFIHLTDKSET 103 (142)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHHTTCCT--------------TTHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCCh--------------hhHHHHHHHHHHCCCEEeecCCCCcceEEEEEChHHHH
Confidence 3456888888889999999999887532 357789999999999986542 344 57999999
Q ss_pred hHHHHHHH
Q 034587 78 DLDQVAGR 85 (90)
Q Consensus 78 ~lD~iA~~ 85 (90)
.++.+...
T Consensus 104 ~~~~~~~~ 111 (142)
T 2bv6_A 104 IRPELSNA 111 (142)
T ss_dssp HHHHHTTH
T ss_pred HHHHHHHH
Confidence 99887543
No 29
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.22 E-value=0.0013 Score=42.25 Aligned_cols=67 Identities=15% Similarity=0.149 Sum_probs=52.2
Q ss_pred HHHHHHHHhh-cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CCe----eeCcchHh
Q 034587 5 VTSMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQR 77 (90)
Q Consensus 5 ~ASi~RklYl-~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~ 77 (90)
-..|+..|+- .+++.+..|+...|-. .+-+-.+++.||+.|||+..++ ++| .||++|+.
T Consensus 37 ~~~iL~~l~~~~~~~~~~~la~~l~i~--------------~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~ 102 (147)
T 2hr3_A 37 QLVVLGAIDRLGGDVTPSELAAAERMR--------------SSNLAALLRELERGGLIVRHADPQDGRRTRVSLSSEGRR 102 (147)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHTTCC--------------HHHHHHHHHHHHHTTSEEEEC------CCEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCC--------------hhhHHHHHHHHHHCCCEeeCCCCCCCCceeeEECHHHHH
Confidence 3568888888 8999999999987643 3678889999999999987642 344 59999999
Q ss_pred hHHHHHHH
Q 034587 78 DLDQVAGR 85 (90)
Q Consensus 78 ~lD~iA~~ 85 (90)
.++.+...
T Consensus 103 ~~~~~~~~ 110 (147)
T 2hr3_A 103 NLYGNRAK 110 (147)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 30
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=97.21 E-value=0.00093 Score=43.38 Aligned_cols=68 Identities=18% Similarity=0.270 Sum_probs=47.5
Q ss_pred HHHHHHHHhhc--CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCee----eCcchH
Q 034587 5 VTSMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRR----ITSSGQ 76 (90)
Q Consensus 5 ~ASi~RklYl~--g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR~----lT~~G~ 76 (90)
-..|+..|+-. +++.+..|+...|-.+ +-+-.+++.||+.|||++.+ .++|. ||++|+
T Consensus 43 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~--------------~~vs~~l~~L~~~Glv~r~~~~~DrR~~~~~LT~~G~ 108 (148)
T 3jw4_A 43 QGRMIGYIYENQESGIIQKDLAQFFGRRG--------------ASITSMLQGLEKKGYIERRIPENNARQKNIYVLPKGA 108 (148)
T ss_dssp HHHHHHHHHHHTTTCCCHHHHHHC--------------------CHHHHHHHHHHTTSBCCC--------CCCCBCHHHH
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHCCCh--------------hHHHHHHHHHHHCCCEEeeCCCCCchhheeeECHHHH
Confidence 35688888887 8999999999776432 35668999999999998664 34553 999999
Q ss_pred hhHHHHHHHh
Q 034587 77 RDLDQVAGRI 86 (90)
Q Consensus 77 ~~lD~iA~~v 86 (90)
..++.+...+
T Consensus 109 ~~~~~~~~~~ 118 (148)
T 3jw4_A 109 ALVEEFNNIF 118 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 31
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=97.20 E-value=0.0012 Score=43.71 Aligned_cols=68 Identities=15% Similarity=0.168 Sum_probs=54.1
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHhh
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRD 78 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~ 78 (90)
-..||..|+-.+++.+..|+...|-. .+-+-.+++.||+.|||++.+ +++| .||++|+..
T Consensus 55 q~~vL~~l~~~~~~t~~eLa~~l~~~--------------~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~LT~~G~~~ 120 (161)
T 3e6m_A 55 KLRLLSSLSAYGELTVGQLATLGVME--------------QSTTSRTVDQLVDEGLAARSISDADQRKRTVVLTRKGKKK 120 (161)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHTTCC--------------HHHHHHHHHHHHHTTSEEECC---CCCSCEEEECHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEeeCCcccCCeeEeeECHHHHHH
Confidence 34688888888999999999987653 257778999999999998665 3344 599999999
Q ss_pred HHHHHHHh
Q 034587 79 LDQVAGRI 86 (90)
Q Consensus 79 lD~iA~~v 86 (90)
++++...+
T Consensus 121 ~~~~~~~~ 128 (161)
T 3e6m_A 121 LAEISPLI 128 (161)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876543
No 32
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=97.20 E-value=0.0018 Score=42.35 Aligned_cols=69 Identities=9% Similarity=0.068 Sum_probs=54.3
Q ss_pred hhHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchH
Q 034587 3 ELVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQ 76 (90)
Q Consensus 3 ~r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~ 76 (90)
..-..|+..|+-.+++.+..|+...|-. .+-+-.+++.||+.|||+..+ .++| .||++|+
T Consensus 44 ~~~~~iL~~l~~~~~~t~~ela~~l~is--------------~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~ 109 (154)
T 2eth_A 44 TTELYAFLYVALFGPKKMKEIAEFLSTT--------------KSNVTNVVDSLEKRGLVVREMDPVDRRTYRVVLTEKGK 109 (154)
T ss_dssp HHHHHHHHHHHHHCCBCHHHHHHHTTSC--------------HHHHHHHHHHHHHTTSEEEEECTTTSSCEEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEeeCCCCCcceeEEEECHHHH
Confidence 3445688889988999999999988642 356778999999999998643 3344 5899999
Q ss_pred hhHHHHHHH
Q 034587 77 RDLDQVAGR 85 (90)
Q Consensus 77 ~~lD~iA~~ 85 (90)
..++.+...
T Consensus 110 ~~~~~~~~~ 118 (154)
T 2eth_A 110 EIFGEILSN 118 (154)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 33
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=97.19 E-value=0.0016 Score=41.18 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=53.0
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~ 77 (90)
.-..|+..|+-.+++.+..|+...|-.+ +-+-.+|+.||+.|||+..+ .++| .||++|+.
T Consensus 34 ~~~~iL~~l~~~~~~~~~ela~~l~~~~--------------~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~lT~~G~~ 99 (139)
T 3bja_A 34 VQFGVIQVLAKSGKVSMSKLIENMGCVP--------------SNMTTMIQRMKRDGYVMTEKNPNDQRETLVYLTKKGEE 99 (139)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHCSSCC--------------TTHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCCh--------------hHHHHHHHHHHHCCCeeeccCCCCCceeEEEECHHHHH
Confidence 3456788888889999999999886532 35677899999999998643 3343 59999999
Q ss_pred hHHHHHHH
Q 034587 78 DLDQVAGR 85 (90)
Q Consensus 78 ~lD~iA~~ 85 (90)
.++.+...
T Consensus 100 ~~~~~~~~ 107 (139)
T 3bja_A 100 TKKQVDVQ 107 (139)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887654
No 34
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=97.16 E-value=0.0025 Score=41.65 Aligned_cols=67 Identities=12% Similarity=0.086 Sum_probs=51.2
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCC----eeeCcchHhh
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGG----RRITSSGQRD 78 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~G----R~lT~~G~~~ 78 (90)
-..|+..|+-.+++.+..|+...|-. .+-+-.+|+.||+.|||+..+ .++ -.||++|+..
T Consensus 51 ~~~iL~~l~~~~~~t~~ela~~l~is--------------~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~~ 116 (162)
T 2fa5_A 51 EWRVITILALYPGSSASEVSDRTAMD--------------KVAVSRAVARLLERGFIRRETHGDDRRRSMLALSPAGRQV 116 (162)
T ss_dssp HHHHHHHHHHSTTCCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEC---------CCCEECHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEeeecCCCCCCeeEEEECHHHHHH
Confidence 35688888888999999999988743 257888999999999998754 233 3599999999
Q ss_pred HHHHHHH
Q 034587 79 LDQVAGR 85 (90)
Q Consensus 79 lD~iA~~ 85 (90)
++.+...
T Consensus 117 ~~~~~~~ 123 (162)
T 2fa5_A 117 YETVAPL 123 (162)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876554
No 35
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=97.15 E-value=0.0022 Score=41.69 Aligned_cols=65 Identities=15% Similarity=0.304 Sum_probs=48.9
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccc----cCCCCe----eeCcchHh
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI----EPKGGR----RITSSGQR 77 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k----~~~~GR----~lT~~G~~ 77 (90)
..|+..| -.+++.+..|+...|-.+ +-+-.+++.||+.|||+. +++++| .||++|+.
T Consensus 41 ~~iL~~l-~~~~~t~~eLa~~l~~~~--------------~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~~~~lT~~G~~ 105 (151)
T 3kp7_A 41 SHVLNML-SIEALTVGQITEKQGVNK--------------AAVSRRVKKLLNAELVKLEKPDSNTDQRLKIIKLSNKGKK 105 (151)
T ss_dssp HHHHHHH-HHSCBCHHHHHHHHCSCS--------------SHHHHHHHHHHHTTSEEC-----------CCBEECHHHHH
T ss_pred HHHHHHH-HcCCcCHHHHHHHHCCCH--------------HHHHHHHHHHHHCCCEEeeCCCCCCCCCeeEEEECHhHHH
Confidence 4577778 789999999999887543 467789999999999996 555555 59999999
Q ss_pred hHHHHHHH
Q 034587 78 DLDQVAGR 85 (90)
Q Consensus 78 ~lD~iA~~ 85 (90)
.++.+...
T Consensus 106 ~~~~~~~~ 113 (151)
T 3kp7_A 106 YIKERKAI 113 (151)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887554
No 36
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=97.14 E-value=0.00095 Score=43.17 Aligned_cols=69 Identities=13% Similarity=0.044 Sum_probs=52.8
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~ 77 (90)
--..|+..|+-.+++.+..|+...+-. .+-+-.+++.||+.|||++.+ .++| .||++|+.
T Consensus 37 ~q~~vL~~l~~~~~~t~~eLa~~l~~~--------------~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~LT~~G~~ 102 (140)
T 3hsr_A 37 TGYIVLMAIENDEKLNIKKLGERVFLD--------------SGTLTPLLKKLEKKDYVVRTREEKDERNLQISLTEQGKA 102 (140)
T ss_dssp HHHHHHHHSCTTCEEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHH
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCC--------------hhhHHHHHHHHHHCCCeEecCCCCCcceeeeeEChHHHH
Confidence 345678888888999999999988653 367788999999999998665 3444 58999999
Q ss_pred hHHHHHHHh
Q 034587 78 DLDQVAGRI 86 (90)
Q Consensus 78 ~lD~iA~~v 86 (90)
.++.+....
T Consensus 103 ~~~~~~~~~ 111 (140)
T 3hsr_A 103 IKSPLAEIS 111 (140)
T ss_dssp THHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876543
No 37
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.14 E-value=0.0014 Score=41.69 Aligned_cols=69 Identities=16% Similarity=0.103 Sum_probs=54.3
Q ss_pred hhHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchH
Q 034587 3 ELVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQ 76 (90)
Q Consensus 3 ~r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~ 76 (90)
..-..|+..|+-.+++.+..|+...|-. .+-+-.+|+.||+.|||+..+ +++| .||++|+
T Consensus 36 ~~~~~iL~~l~~~~~~t~~ela~~l~~s--------------~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~ 101 (142)
T 2fbi_A 36 EQQWRVIRILRQQGEMESYQLANQACIL--------------RPSMTGVLARLERDGIVRRWKAPKDQRRVYVNLTEKGQ 101 (142)
T ss_dssp HHHHHHHHHHHHHCSEEHHHHHHHTTCC--------------HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCC--------------HhHHHHHHHHHHHCCCEEeecCCCCCCeeEEEECHHHH
Confidence 3445688888888999999999987643 357888999999999998654 3344 4999999
Q ss_pred hhHHHHHHH
Q 034587 77 RDLDQVAGR 85 (90)
Q Consensus 77 ~~lD~iA~~ 85 (90)
..++++...
T Consensus 102 ~~~~~~~~~ 110 (142)
T 2fbi_A 102 QCFVSMSGD 110 (142)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887654
No 38
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=97.12 E-value=0.0018 Score=40.98 Aligned_cols=69 Identities=12% Similarity=0.181 Sum_probs=53.8
Q ss_pred hhHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchH
Q 034587 3 ELVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQ 76 (90)
Q Consensus 3 ~r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~ 76 (90)
..-..|+..|+-.+++.+..|+...|-. .+-+-.+|+.||+.|||+..+ .++| .||++|+
T Consensus 38 ~~~~~iL~~l~~~~~~t~~ela~~l~~~--------------~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~ 103 (140)
T 2nnn_A 38 PTQWAALVRLGETGPCPQNQLGRLTAMD--------------AATIKGVVERLDKRGLIQRSADPDDGRRLLVSLSPAGR 103 (140)
T ss_dssp HHHHHHHHHHHHHSSBCHHHHHHHTTCC--------------HHHHHHHHHHHHHTTCEEEEEETTEEEEEEEEECHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEeeCCCCCCCeeeeEECHhHH
Confidence 3445688888888999999999987643 356788999999999998754 2233 5999999
Q ss_pred hhHHHHHHH
Q 034587 77 RDLDQVAGR 85 (90)
Q Consensus 77 ~~lD~iA~~ 85 (90)
..++++...
T Consensus 104 ~~~~~~~~~ 112 (140)
T 2nnn_A 104 AELEAGLAA 112 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887554
No 39
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=97.10 E-value=0.0021 Score=41.45 Aligned_cols=67 Identities=15% Similarity=0.214 Sum_probs=53.4
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CCe----eeCcchHhh
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRD 78 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~ 78 (90)
-..|+..|+-.+++.+..|+...|-. .+-+..+|+.||+.|||+..++ ++| .||++|+..
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l~~~--------------~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~ 107 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAALQMK--------------RQYISRILQEVQRAGLIERRTNPEHARSHRYWLTPRGEAI 107 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEECHHHHHH
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCeeecCCcccccceeeEEChhhHHH
Confidence 45678888888999999999988753 3578889999999999987542 333 589999999
Q ss_pred HHHHHHH
Q 034587 79 LDQVAGR 85 (90)
Q Consensus 79 lD~iA~~ 85 (90)
++.+...
T Consensus 108 ~~~~~~~ 114 (152)
T 3bj6_A 108 ITAIRAD 114 (152)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876544
No 40
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=97.10 E-value=0.0029 Score=40.74 Aligned_cols=68 Identities=13% Similarity=0.141 Sum_probs=52.7
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CC----CeeeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KG----GRRITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~----GR~lT~~G~~ 77 (90)
.-..|+..|+-.+++.+..|+...|-. .+-+-.+++.||+.|||+..+ .+ .=.||++|+.
T Consensus 41 ~~~~iL~~l~~~~~~t~~ela~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~lT~~G~~ 106 (148)
T 3nrv_A 41 TEWRIISVLSSASDCSVQKISDILGLD--------------KAAVSRTVKKLEEKKYIEVNGHSEDKRTYAINLTEMGQE 106 (148)
T ss_dssp HHHHHHHHHHHSSSBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEC---------CCBEECHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEeecCCCCcceeEeEECHhHHH
Confidence 345688889999999999999988743 357888999999999998664 22 3369999999
Q ss_pred hHHHHHHH
Q 034587 78 DLDQVAGR 85 (90)
Q Consensus 78 ~lD~iA~~ 85 (90)
.++.+...
T Consensus 107 ~~~~~~~~ 114 (148)
T 3nrv_A 107 LYEVASDF 114 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99987654
No 41
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=97.09 E-value=0.0021 Score=42.19 Aligned_cols=68 Identities=16% Similarity=0.169 Sum_probs=53.7
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~ 77 (90)
.-..|+..|+-.+++.+..|+...|-. .+-+..+|+.||+.|||+..+ +++| .||++|+.
T Consensus 53 ~~~~iL~~l~~~~~~t~~ela~~l~is--------------~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~ 118 (162)
T 3cjn_A 53 AKMRALAILSAKDGLPIGTLGIFAVVE--------------QSTLSRALDGLQADGLVRREVDSDDQRSSRVYLTPAGRA 118 (162)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEECHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCC--------------hhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHH
Confidence 345688888888999999999988643 357888999999999998754 2333 59999999
Q ss_pred hHHHHHHH
Q 034587 78 DLDQVAGR 85 (90)
Q Consensus 78 ~lD~iA~~ 85 (90)
.++.+...
T Consensus 119 ~~~~~~~~ 126 (162)
T 3cjn_A 119 VYDRLWPH 126 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887554
No 42
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=97.03 E-value=0.0028 Score=40.54 Aligned_cols=67 Identities=9% Similarity=0.085 Sum_probs=53.3
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHhh
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRD 78 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~ 78 (90)
-..|+..|+-.+++.+..|+...|-. .+-+-.+++.||+.|||+..+ .++| .||++|+..
T Consensus 31 ~~~iL~~l~~~~~~t~~~la~~l~~s--------------~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~lT~~G~~~ 96 (144)
T 1lj9_A 31 QYLYLVRVCENPGIIQEKIAELIKVD--------------RTTAARAIKRLEEQGFIYRQEDASNKKIKRIYATEKGKNV 96 (144)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECHHHHHH
T ss_pred HHHHHHHHHHCcCcCHHHHHHHHCCC--------------HhHHHHHHHHHHHCCCEEeecCCCCCceeeeEEChhHHHH
Confidence 35678888888999999999988643 357888999999999998654 3343 599999999
Q ss_pred HHHHHHH
Q 034587 79 LDQVAGR 85 (90)
Q Consensus 79 lD~iA~~ 85 (90)
++.+...
T Consensus 97 ~~~~~~~ 103 (144)
T 1lj9_A 97 YPIIVRE 103 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9877554
No 43
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=97.01 E-value=0.003 Score=42.43 Aligned_cols=68 Identities=13% Similarity=0.111 Sum_probs=51.3
Q ss_pred HHHHHHHHhh-cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHh
Q 034587 5 VTSMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQR 77 (90)
Q Consensus 5 ~ASi~RklYl-~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~ 77 (90)
-..||..|+- .+++.+..|+...|-. .+-+-.+++.||+.|||++.+ +++| .||++|+.
T Consensus 55 q~~vL~~L~~~~~~~t~~eLa~~l~i~--------------~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~ 120 (166)
T 3deu_A 55 HWVTLHNIHQLPPDQSQIQLAKAIGIE--------------QPSLVRTLDQLEDKGLISRQTCASDRRAKRIKLTEKAEP 120 (166)
T ss_dssp HHHHHHHHHHSCSSEEHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEEEC--------CEEEECGGGHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCC--------------HhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEECHHHHH
Confidence 3567888887 6789999999988753 256778999999999999765 3444 49999999
Q ss_pred hHHHHHHHh
Q 034587 78 DLDQVAGRI 86 (90)
Q Consensus 78 ~lD~iA~~v 86 (90)
.++.+...+
T Consensus 121 ~~~~~~~~~ 129 (166)
T 3deu_A 121 LIAEMEEVI 129 (166)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876543
No 44
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.00 E-value=0.0047 Score=39.33 Aligned_cols=67 Identities=10% Similarity=0.094 Sum_probs=51.8
Q ss_pred HHHHHHHH-hhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CCe----eeCcchHh
Q 034587 5 VTSMARKI-YLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQR 77 (90)
Q Consensus 5 ~ASi~Rkl-Yl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~ 77 (90)
-..|+..| +-.+++.+..|+...|-. .+-+..+++.||+.|||+..++ ++| .||++|+.
T Consensus 39 ~~~iL~~l~~~~~~~t~~~la~~l~~s--------------~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~~lT~~G~~ 104 (146)
T 2fbh_A 39 RWLVLLHLARHRDSPTQRELAQSVGVE--------------GPTLARLLDGLESQGLVRRLAVAEDRRAKHIVLTPKADV 104 (146)
T ss_dssp HHHHHHHHHHCSSCCBHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEECCBTTBCSCEEEECTTHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHhCCC--------------hhhHHHHHHHHHHCCCeeecCCCcccCeeeeEECHhHHH
Confidence 34678888 557889999999988643 3578889999999999987642 333 68999999
Q ss_pred hHHHHHHH
Q 034587 78 DLDQVAGR 85 (90)
Q Consensus 78 ~lD~iA~~ 85 (90)
.++.+...
T Consensus 105 ~~~~~~~~ 112 (146)
T 2fbh_A 105 LIADIEAI 112 (146)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99887544
No 45
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=97.00 E-value=0.0028 Score=38.51 Aligned_cols=67 Identities=15% Similarity=0.197 Sum_probs=51.4
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCC---eeeCcchHhhHHHHH
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGG---RRITSSGQRDLDQVA 83 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~lD~iA 83 (90)
.|+..|.-.+++.+..|+...|- |.+-+...|+.||+.|||+..+++. ..||++|...+-...
T Consensus 28 ~il~~l~~~~~~s~~ela~~l~i--------------s~~tvs~~l~~L~~~glv~~~~~~r~~~y~l~~~~~~~l~~~l 93 (99)
T 3cuo_A 28 LILCMLSGSPGTSAGELTRITGL--------------SASATSQHLARMRDEGLIDSQRDAQRILYSIKNEAVNAIIATL 93 (99)
T ss_dssp HHHHHHTTCCSEEHHHHHHHHCC--------------CHHHHHHHHHHHHHTTSEEEEECSSCEEEEECCHHHHHHHHHH
T ss_pred HHHHHHHhCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEecCCEEEEEEChHHHHHHHHHH
Confidence 46666666668999999998874 3468999999999999999876432 268999977776665
Q ss_pred HHhh
Q 034587 84 GRIV 87 (90)
Q Consensus 84 ~~v~ 87 (90)
.+++
T Consensus 94 ~~~~ 97 (99)
T 3cuo_A 94 KNVY 97 (99)
T ss_dssp HHHH
T ss_pred HHhh
Confidence 5543
No 46
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=96.98 E-value=0.0026 Score=40.63 Aligned_cols=68 Identities=19% Similarity=0.319 Sum_probs=53.8
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~ 77 (90)
.-..|+..|+-.+++.+..|+...|- +.+-+-.+++.||+.|||+..+ .++| .||++|+.
T Consensus 34 ~~~~iL~~l~~~~~~~~~~la~~l~~--------------s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~~lT~~G~~ 99 (145)
T 2a61_A 34 AQFDILQKIYFEGPKRPGELSVLLGV--------------AKSTVTGLVKRLEADGYLTRTPDPADRRAYFLVITRKGEE 99 (145)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCC--------------CchhHHHHHHHHHHCCCeeecCCCCCCceEEEEECHHHHH
Confidence 34568888888899999999998864 2357888999999999998754 2333 58999999
Q ss_pred hHHHHHHH
Q 034587 78 DLDQVAGR 85 (90)
Q Consensus 78 ~lD~iA~~ 85 (90)
.++.+...
T Consensus 100 ~~~~~~~~ 107 (145)
T 2a61_A 100 VIEKVIER 107 (145)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99876544
No 47
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=96.97 E-value=0.004 Score=40.51 Aligned_cols=67 Identities=10% Similarity=0.128 Sum_probs=50.9
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHhh
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRD 78 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~ 78 (90)
-..|+..|+-.+++.+..|+...|-. .+-+-.+|+.||+.|||+..+ +++| .||++|+..
T Consensus 45 ~~~iL~~l~~~~~~t~~ela~~l~i~--------------~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~lT~~G~~~ 110 (155)
T 3cdh_A 45 EWRVLACLVDNDAMMITRLAKLSLME--------------QSRMTRIVDQMDARGLVTRVADAKDKRRVRVRLTDDGRAL 110 (155)
T ss_dssp HHHHHHHHSSCSCBCHHHHHHHTTCC--------------HHHHHHHHHHHHHTTSEEECC------CCCEEECHHHHHH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEeccCCCcCCeeEeEECHHHHHH
Confidence 34678888888899999999987643 256778999999999999754 2333 599999999
Q ss_pred HHHHHHH
Q 034587 79 LDQVAGR 85 (90)
Q Consensus 79 lD~iA~~ 85 (90)
++.+...
T Consensus 111 ~~~~~~~ 117 (155)
T 3cdh_A 111 AESLVAS 117 (155)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9887544
No 48
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=96.93 E-value=0.0022 Score=38.92 Aligned_cols=66 Identities=8% Similarity=0.103 Sum_probs=50.6
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCC----eeeCcchHhhHH
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGG----RRITSSGQRDLD 80 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~G----R~lT~~G~~~lD 80 (90)
.|+..|+-.++..+..|+...|- +.+-+-..|+.||+.|||+... ..+ -.||++|...+.
T Consensus 20 ~iL~~L~~~~~~~~~ela~~l~i--------------s~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~lt~~g~~~~~ 85 (100)
T 1ub9_A 20 GIMIFLLPRRKAPFSQIQKVLDL--------------TPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEITDFGMEEAK 85 (100)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHHhcCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEECHHHHHHHH
Confidence 46777777789999999998864 3367888999999999998533 223 358999998888
Q ss_pred HHHHHh
Q 034587 81 QVAGRI 86 (90)
Q Consensus 81 ~iA~~v 86 (90)
.+...+
T Consensus 86 ~~~~~~ 91 (100)
T 1ub9_A 86 RFLSSL 91 (100)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 49
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=96.93 E-value=0.0036 Score=40.09 Aligned_cols=63 Identities=13% Similarity=0.135 Sum_probs=49.2
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHhhH
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDL 79 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~l 79 (90)
..|+..|+-.+ +.+..|+...|-. .+-+..+|+.||+.|||+..+ .++| .||++|+..+
T Consensus 41 ~~iL~~l~~~~-~t~~eLa~~l~~s--------------~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~lT~~g~~~~ 105 (146)
T 3tgn_A 41 EHILMLLSEES-LTNSELARRLNVS--------------QAAVTKAIKSLVKEGMLETSKDSKDARVIFYQLTDLARPIA 105 (146)
T ss_dssp HHHHHHHTTCC-CCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEC----------CCEECGGGHHHH
T ss_pred HHHHHHHHhCC-CCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCeEeccCCCCCceeEEEECHhHHHHH
Confidence 56888888777 9999999998753 367899999999999998665 2444 4999999999
Q ss_pred HHHH
Q 034587 80 DQVA 83 (90)
Q Consensus 80 D~iA 83 (90)
+.+.
T Consensus 106 ~~~~ 109 (146)
T 3tgn_A 106 EEHH 109 (146)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8886
No 50
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=96.92 E-value=0.0043 Score=47.66 Aligned_cols=70 Identities=14% Similarity=0.115 Sum_probs=53.0
Q ss_pred hhhHHHHHH-----HHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCC-CeeeCcch
Q 034587 2 SELVTSMAR-----KIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG-GRRITSSG 75 (90)
Q Consensus 2 ~~r~ASi~R-----klYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~-GR~lT~~G 75 (90)
+.|--.|++ .|--.+|||+..|++.|+= .-|..-||+-|..||++|++++.-.+ ||..|.+|
T Consensus 16 ~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l------------~VS~aTIRrDL~~LE~~GlL~r~HgsAgript~~g 83 (338)
T 1stz_A 16 NDRQRKVLYCIVREYIENKKPVSSQRVLEVSNI------------EFSSATIRNDMKKLEYLGYIYQPHTSAGRIPTDKG 83 (338)
T ss_dssp CHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCC------------CSCHHHHHHHHHHHHHTTSEECCSSCSCBEECHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCC------------CCCHHHHHHHHHHHHHCCCEEEccCcceecCCccc
Confidence 467777887 4444699999999998842 12558999999999999999976643 68888888
Q ss_pred -HhhHHHHH
Q 034587 76 -QRDLDQVA 83 (90)
Q Consensus 76 -~~~lD~iA 83 (90)
+.+.|.+.
T Consensus 84 ~r~yvd~l~ 92 (338)
T 1stz_A 84 LRFYYEEML 92 (338)
T ss_dssp HHHHHHHHH
T ss_pred chhhhhhhh
Confidence 44566554
No 51
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=96.92 E-value=0.0025 Score=45.43 Aligned_cols=63 Identities=11% Similarity=0.178 Sum_probs=52.6
Q ss_pred HHHHHhh----cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHHH
Q 034587 8 MARKIYL----RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVA 83 (90)
Q Consensus 8 i~RklYl----~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~iA 83 (90)
.|.-||. .+++.+..|+...|-.+ +-+..+|+.||+.|||+..+.++=.||++|+....++.
T Consensus 7 YL~~I~~l~~~~~~~~~~~lA~~l~vs~--------------~tvs~~l~~Le~~GlV~r~~~~~i~LT~~G~~~~~~~~ 72 (214)
T 3hrs_A 7 YLKCLYELGTRHNKITNKEIAQLMQVSP--------------PAVTEMMKKLLAEELLIKDKKAGYLLTDLGLKLVSDLY 72 (214)
T ss_dssp HHHHHHHTTSSCSCCCHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSEEEETTTEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCcCHHHHHHHHCCCh--------------hHHHHHHHHHHHCCCEEEecCCCeEECHHHHHHHHHHH
Confidence 3556665 46899999999887643 67889999999999999988778899999999988876
Q ss_pred H
Q 034587 84 G 84 (90)
Q Consensus 84 ~ 84 (90)
.
T Consensus 73 ~ 73 (214)
T 3hrs_A 73 R 73 (214)
T ss_dssp H
T ss_pred H
Confidence 5
No 52
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.92 E-value=0.0023 Score=41.44 Aligned_cols=68 Identities=13% Similarity=0.144 Sum_probs=53.3
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CCe----eeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~ 77 (90)
.-..|+..|+-.+++.+..|+...|-. .+-+..+++.||+.|||+..++ ++| .||++|+.
T Consensus 38 ~~~~iL~~l~~~~~~t~~ela~~l~~s--------------~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~ 103 (155)
T 1s3j_A 38 AQLFVLASLKKHGSLKVSEIAERMEVK--------------PSAVTLMADRLEQKNLIARTHNTKDRRVIDLSLTDEGDI 103 (155)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEEEEECSSCTTSEEEEECHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEeecCCCCCCceEEEEECHHHHH
Confidence 345678888888999999999988642 3678889999999999986542 333 68999999
Q ss_pred hHHHHHHH
Q 034587 78 DLDQVAGR 85 (90)
Q Consensus 78 ~lD~iA~~ 85 (90)
.++.+...
T Consensus 104 ~~~~~~~~ 111 (155)
T 1s3j_A 104 KFEEVLAG 111 (155)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99886554
No 53
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.91 E-value=0.0023 Score=40.78 Aligned_cols=64 Identities=8% Similarity=0.061 Sum_probs=49.2
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CC----eeeCcchHhhH
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GG----RRITSSGQRDL 79 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~G----R~lT~~G~~~l 79 (90)
..|+..|+ .++..+..|.+... .-|.+.+-..|+.||+.|||+.... ++ -.||++|+..+
T Consensus 17 ~~IL~~L~-~~~~~~~eLa~~l~-------------~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~~G~~l~ 82 (107)
T 2hzt_A 17 XVILXHLT-HGKKRTSELKRLMP-------------NITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSEYGRSLE 82 (107)
T ss_dssp HHHHHHHT-TCCBCHHHHHHHCT-------------TSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHHH-hCCCCHHHHHHHhc-------------CCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECccHHHHH
Confidence 35777887 89999999998761 2345788999999999999986542 23 48999999877
Q ss_pred HHHH
Q 034587 80 DQVA 83 (90)
Q Consensus 80 D~iA 83 (90)
+.+.
T Consensus 83 ~~~~ 86 (107)
T 2hzt_A 83 GILD 86 (107)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 54
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=96.90 E-value=0.0031 Score=39.48 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=50.7
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCe----eeCcchHhhHHH
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR----RITSSGQRDLDQ 81 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR----~lT~~G~~~lD~ 81 (90)
..|+..| -.+|+.+..|+...|- |.+-+...|+.||+.|||+..++ || .||++|...+..
T Consensus 24 ~~IL~~L-~~~~~~~~ela~~l~i--------------s~~tv~~~l~~L~~~gli~~~~~-gr~~~y~l~~~~~~~~~~ 87 (114)
T 2oqg_A 24 WEILTEL-GRADQSASSLATRLPV--------------SRQAIAKHLNALQACGLVESVKV-GREIRYRALGAELNKTAR 87 (114)
T ss_dssp HHHHHHH-HHSCBCHHHHHHHSSS--------------CHHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECSHHHHHHHH
T ss_pred HHHHHHH-HcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeeEEec-CCEEEEEechHHHHHHHH
Confidence 3577777 6799999999998863 34689999999999999987764 54 799999877765
Q ss_pred HHHH
Q 034587 82 VAGR 85 (90)
Q Consensus 82 iA~~ 85 (90)
....
T Consensus 88 ~~~~ 91 (114)
T 2oqg_A 88 TLER 91 (114)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
No 55
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=96.88 E-value=0.0047 Score=40.06 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=49.4
Q ss_pred HHHHHHHHhhcC-CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHh
Q 034587 5 VTSMARKIYLRQ-GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQR 77 (90)
Q Consensus 5 ~ASi~RklYl~g-~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~ 77 (90)
-..||..|+-.+ ++.+..|+...|-. .+-+-.+++.||+.|||++.+ .++| .||++|+.
T Consensus 41 q~~vL~~l~~~~~~~t~~eLa~~l~i~--------------~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~ 106 (150)
T 3fm5_A 41 SYSVLVLACEQAEGVNQRGVAATMGLD--------------PSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRR 106 (150)
T ss_dssp HHHHHHHHHHSTTCCCSHHHHHHHTCC--------------HHHHHHHHHHHHTTTSEEC-----------CEECHHHHH
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHCCC--------------HhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHH
Confidence 456777777654 78999999988743 356778899999999998755 3343 59999999
Q ss_pred hHHHHHHHh
Q 034587 78 DLDQVAGRI 86 (90)
Q Consensus 78 ~lD~iA~~v 86 (90)
.++.+...+
T Consensus 107 ~~~~~~~~~ 115 (150)
T 3fm5_A 107 LRDDAKARV 115 (150)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876553
No 56
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=96.85 E-value=0.0023 Score=40.62 Aligned_cols=63 Identities=19% Similarity=0.189 Sum_probs=49.0
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CC----eeeCcchHhhHH
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GG----RRITSSGQRDLD 80 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~G----R~lT~~G~~~lD 80 (90)
.|+..|+ .++..+..|++..++ -+.+.+-..|+.||+.|||+..+. ++ -.||++|+..++
T Consensus 29 ~IL~~L~-~~~~~~~eL~~~l~g-------------is~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 94 (107)
T 2fsw_A 29 LIIFQIN-RRIIRYGELKRAIPG-------------ISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPLGEKVLP 94 (107)
T ss_dssp HHHHHHT-TSCEEHHHHHHHSTT-------------CCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHHHHTTHH
T ss_pred HHHHHHH-hCCcCHHHHHHHccc-------------CCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECccHHHHHH
Confidence 4777777 889999999987742 244788999999999999986542 23 379999998877
Q ss_pred HHH
Q 034587 81 QVA 83 (90)
Q Consensus 81 ~iA 83 (90)
.+.
T Consensus 95 ~l~ 97 (107)
T 2fsw_A 95 IID 97 (107)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 57
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=96.82 E-value=0.002 Score=41.31 Aligned_cols=63 Identities=14% Similarity=0.221 Sum_probs=48.8
Q ss_pred HHHHHHHhhcCCCchhHHHHHh-cCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CC----eeeCcchHhh
Q 034587 6 TSMARKIYLRQGLGVGSFRRIY-GGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GG----RRITSSGQRD 78 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~Y-Gg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~G----R~lT~~G~~~ 78 (90)
..|+..|+ .++..+..|+... | -+.+.+-..|+.||+.|||+..+. ++ -.||++|+..
T Consensus 25 ~~IL~~L~-~~~~~~~eLa~~l~~--------------is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~~G~~~ 89 (112)
T 1z7u_A 25 LSLMDELF-QGTKRNGELMRALDG--------------ITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTPEGYAL 89 (112)
T ss_dssp HHHHHHHH-HSCBCHHHHHHHSTT--------------CCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHhcc--------------CCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECHhHHHH
Confidence 35777777 6899999999977 3 244788899999999999986552 23 3789999987
Q ss_pred HHHHH
Q 034587 79 LDQVA 83 (90)
Q Consensus 79 lD~iA 83 (90)
++.+.
T Consensus 90 ~~~~~ 94 (112)
T 1z7u_A 90 YDALS 94 (112)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 76653
No 58
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=96.73 E-value=0.0042 Score=41.23 Aligned_cols=68 Identities=10% Similarity=0.139 Sum_probs=51.5
Q ss_pred HHHHHHHHhhc--CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchH
Q 034587 5 VTSMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQ 76 (90)
Q Consensus 5 ~ASi~RklYl~--g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~ 76 (90)
-..||..|+-. +++.+..|+...|-.+ +-+-.+++.||+.|||++.+ .++| .||++|+
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~--------------~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~ 113 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADRLISRA--------------PDITRLIDRLDDRGLVLRTRKPENRRVVEVALTDAGL 113 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHC---C--------------THHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHH
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCCCh--------------hhHHHHHHHHHHCCCEeecCCCCCCCeeEeEECHHHH
Confidence 35688888885 5899999999886532 46778999999999998654 3344 4999999
Q ss_pred hhHHHHHHHh
Q 034587 77 RDLDQVAGRI 86 (90)
Q Consensus 77 ~~lD~iA~~v 86 (90)
..++.+...+
T Consensus 114 ~~~~~~~~~~ 123 (168)
T 3u2r_A 114 KLLKDLEEPV 123 (168)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998876543
No 59
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=96.69 E-value=0.0046 Score=45.27 Aligned_cols=62 Identities=21% Similarity=0.330 Sum_probs=49.7
Q ss_pred HHHHHhh-cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHHHH
Q 034587 8 MARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 84 (90)
Q Consensus 8 i~RklYl-~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~iA~ 84 (90)
.+--||. .+|+|...|+..-|-+ -..+|..++-|++.|||+..+ +|=.||++|++...++-.
T Consensus 20 YLk~I~~L~~~V~~~~LA~~LgvS--------------~~SV~~~lkkL~e~GLV~~~~-~Gv~LTe~G~~~A~~i~~ 82 (200)
T 2p8t_A 20 VLAVIFLLKEPLGRKQISERLELG--------------EGSVRTLLRKLSHLDIIRSKQ-RGHFLTLKGKEIRDKLLS 82 (200)
T ss_dssp HHHHHHHTTSCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEC---CEEECHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCccHHHHHHHhCCC--------------HHHHHHHHHHHHHCCCEEEeC-CCeEECHHHHHHHHHHHH
Confidence 3444554 6899999999998843 368999999999999999888 899999999998777654
No 60
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=96.67 E-value=0.0021 Score=40.73 Aligned_cols=62 Identities=8% Similarity=0.092 Sum_probs=50.7
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchh-HHHHHHHHHHhCCcccccCCCCe---eeCcchHhhH
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGA-IARHILQQLQNMNIIDIEPKGGR---RITSSGQRDL 79 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~-iiR~~LqqLE~~glV~k~~~~GR---~lT~~G~~~l 79 (90)
.-..|+.-|.-+||..+..|++..|-.+ . -+|..|+.||+.|+|++.. .|| .||++|+..|
T Consensus 12 ~~~~IL~~Lk~~g~~ta~eiA~~Lgit~--------------~~aVr~hL~~Le~eGlV~~~~-~gRP~w~LT~~g~~~~ 76 (79)
T 1xmk_A 12 IKEKICDYLFNVSDSSALNLAKNIGLTK--------------ARDINAVLIDMERQGDVYRQG-TTPPIWHLTDKKRERM 76 (79)
T ss_dssp HHHHHHHHHHHTCCEEHHHHHHHHCGGG--------------HHHHHHHHHHHHHTTSEEEEC-SSSCEEEECHHHHTTT
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHcCCCc--------------HHHHHHHHHHHHHCCCEEecC-CCCCCeEeCHhHHhHh
Confidence 3456788888899999999999998643 4 7999999999999998663 466 7899998765
Q ss_pred H
Q 034587 80 D 80 (90)
Q Consensus 80 D 80 (90)
+
T Consensus 77 ~ 77 (79)
T 1xmk_A 77 Q 77 (79)
T ss_dssp C
T ss_pred c
Confidence 3
No 61
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=96.65 E-value=0.0051 Score=41.46 Aligned_cols=62 Identities=18% Similarity=0.260 Sum_probs=49.1
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCC-----CeeeCcchHhhHHH
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG-----GRRITSSGQRDLDQ 81 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~-----GR~lT~~G~~~lD~ 81 (90)
.|++.++ .|+..+..|.+..|- |.+.+-..|+.||+.|||++.+.. .-.||++|+..+..
T Consensus 28 ~IL~~L~-~g~~~~~eLa~~lgi--------------s~~tls~~L~~Le~~GlI~r~~~~~d~~~~y~LT~~G~~l~~~ 92 (146)
T 2f2e_A 28 LIVRDAF-EGLTRFGEFQKSLGL--------------AKNILAARLRNLVEHGVMVAVPAESGSHQEYRLTDKGRALFPL 92 (146)
T ss_dssp HHHHHHH-TTCCSHHHHHHHHCC--------------CHHHHHHHHHHHHHTTSEEEEECSSSSCEEEEECHHHHTTHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhCC--------------CHHHHHHHHHHHHHCCCEEEEecCCCCeEEEEECchHHHHHHH
Confidence 4778886 789999999997754 447899999999999999976532 34799999987665
Q ss_pred HH
Q 034587 82 VA 83 (90)
Q Consensus 82 iA 83 (90)
+.
T Consensus 93 l~ 94 (146)
T 2f2e_A 93 LV 94 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 62
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=96.64 E-value=0.0027 Score=40.27 Aligned_cols=62 Identities=15% Similarity=0.047 Sum_probs=49.6
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CCe----eeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~ 77 (90)
.-..|+..|+-.+++.+..|+...|- +.+-+..+++.||+.|||+..++ ++| .||++|+.
T Consensus 32 ~~~~iL~~l~~~~~~~~~ela~~l~i--------------s~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~lT~~G~~ 97 (142)
T 3bdd_A 32 TRYSILQTLLKDAPLHQLALQERLQI--------------DRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWPTEQARE 97 (142)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEECHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEECHHHHH
Confidence 34568888888899999999998864 33678889999999999986542 333 58999999
Q ss_pred hH
Q 034587 78 DL 79 (90)
Q Consensus 78 ~l 79 (90)
.+
T Consensus 98 ~~ 99 (142)
T 3bdd_A 98 AL 99 (142)
T ss_dssp HH
T ss_pred HH
Confidence 98
No 63
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=96.62 E-value=0.00031 Score=53.23 Aligned_cols=65 Identities=22% Similarity=0.319 Sum_probs=0.0
Q ss_pred hhHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHH
Q 034587 3 ELVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQV 82 (90)
Q Consensus 3 ~r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~i 82 (90)
.|-..|+..||-.+++++..|+..+|-.+ .-||..|+.||+.|||+... .|=.||++|+..++.+
T Consensus 20 ~r~~~iL~~l~~~~~~t~~eLa~~l~vs~--------------~Tv~r~l~~Le~~Glv~~~~-~gi~LT~~G~~~~~~~ 84 (345)
T 2o0m_A 20 QERFQILRNIYWMQPIGRRSLSETMGITE--------------RVLRTETDVLKQLNLIEPSK-SGMTLTERGLEVYQGL 84 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEEEe-cceEEcHHHHHHHHHH
Confidence 45568999999999999999999998743 57999999999999998554 4789999999766543
No 64
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=96.62 E-value=0.0085 Score=41.04 Aligned_cols=68 Identities=15% Similarity=0.205 Sum_probs=52.8
Q ss_pred HHHHHHHHhh--cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchH
Q 034587 5 VTSMARKIYL--RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQ 76 (90)
Q Consensus 5 ~ASi~RklYl--~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~ 76 (90)
-..||..|+- .+++.+..|+...|-. .+-+-.+++.||+.|||+..+ ..+| .||++|+
T Consensus 43 q~~vL~~L~~~~~~~~t~~eLa~~l~is--------------~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~ 108 (189)
T 3nqo_A 43 QYMTILSILHLPEEETTLNNIARKMGTS--------------KQNINRLVANLEKNGYVDVIPSPHDKRAINVKVTDLGK 108 (189)
T ss_dssp HHHHHHHHHHSCGGGCCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEEEEECSSCSSCEEEEECHHHH
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHHHH
Confidence 3467788887 5689999999988753 256778999999999998654 3444 5899999
Q ss_pred hhHHHHHHHh
Q 034587 77 RDLDQVAGRI 86 (90)
Q Consensus 77 ~~lD~iA~~v 86 (90)
..++.+....
T Consensus 109 ~~~~~~~~~~ 118 (189)
T 3nqo_A 109 KVMVTCSRTG 118 (189)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999876543
No 65
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=96.60 E-value=0.0055 Score=40.50 Aligned_cols=65 Identities=12% Similarity=0.182 Sum_probs=46.8
Q ss_pred HHHHHHhhc--CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHhh
Q 034587 7 SMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRD 78 (90)
Q Consensus 7 Si~RklYl~--g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~ 78 (90)
.+|..||.. +++.++.|+...+-.+ +-+=.++..||+.|||+..+ +.+| .||++|+..
T Consensus 39 ~vL~~L~~~~~~~~t~~eLa~~l~~~~--------------~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~LT~~G~~~ 104 (147)
T 4b8x_A 39 EALVLLTFSKSGELPMSKIGERLMVHP--------------TSVTNTVDRLVRSGLVAKRPNPNDGRGTLATITDKGREV 104 (147)
T ss_dssp HHHHHHHTSGGGEEEHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSEEEEECC----CEEEEECHHHHHH
T ss_pred HHHHHHHHCCCCCcCHHHHHHHHCCCH--------------HHHHHHHHHHHhCCCEEEeecCCcCceeEEEECHHHHHH
Confidence 466677764 5688888888776543 45667899999999998655 3444 389999999
Q ss_pred HHHHHHH
Q 034587 79 LDQVAGR 85 (90)
Q Consensus 79 lD~iA~~ 85 (90)
++++...
T Consensus 105 ~~~~~~~ 111 (147)
T 4b8x_A 105 VEAATRD 111 (147)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 66
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=96.53 E-value=0.0086 Score=38.41 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=51.5
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CCe----eeCcchHhhH
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRDL 79 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~l 79 (90)
..|+..|+-.++ .+..|+...|-. .+-+-.+++.||+.|||++.++ ++| .||++|+..+
T Consensus 40 ~~iL~~l~~~~~-~~~~la~~l~~~--------------~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~ 104 (144)
T 3f3x_A 40 FSILKATSEEPR-SMVYLANRYFVT--------------QSAITAAVDKLEAKGLVRRIRDSKDRRIVIVEITPKGRQVL 104 (144)
T ss_dssp HHHHHHHHHSCE-EHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEEETTEEEEEEEEECHHHHHHH
T ss_pred HHHHHHHHHCCC-CHHHHHHHHCCC--------------hhHHHHHHHHHHHCCCEEeccCCCCCceEEEEECHHHHHHH
Confidence 467888888888 999999987653 2567789999999999986653 333 5999999999
Q ss_pred HHHHHHh
Q 034587 80 DQVAGRI 86 (90)
Q Consensus 80 D~iA~~v 86 (90)
+.+....
T Consensus 105 ~~~~~~~ 111 (144)
T 3f3x_A 105 LEANEVL 111 (144)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 67
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=96.53 E-value=0.0035 Score=40.68 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=49.9
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CCe----eeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~ 77 (90)
.-..|+..|+-.+++.+..|+...|- +.+-+..+|+.||+.|||+..++ ++| .||++|+.
T Consensus 48 ~~~~iL~~l~~~~~~t~~ela~~l~~--------------s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~lT~~G~~ 113 (153)
T 2pex_A 48 PQYLVMLVLWETDERSVSEIGERLYL--------------DSATLTPLLKRLQAAGLVTRTRAASDERQVIIALTETGRA 113 (153)
T ss_dssp HHHHHHHHHHHSCSEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEC-------CEEEECHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCC--------------CcccHHHHHHHHHHCCCEeecCCcccCCeeEeeECHHHHH
Confidence 34567888888899999999998874 23578889999999999987542 333 58999998
Q ss_pred hHHHHH
Q 034587 78 DLDQVA 83 (90)
Q Consensus 78 ~lD~iA 83 (90)
.++.+.
T Consensus 114 ~~~~~~ 119 (153)
T 2pex_A 114 LRSKAG 119 (153)
T ss_dssp GGGGST
T ss_pred HHHHHH
Confidence 877643
No 68
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=96.51 E-value=0.0068 Score=39.44 Aligned_cols=68 Identities=12% Similarity=0.168 Sum_probs=49.8
Q ss_pred HHHHHHHHh-hcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHh
Q 034587 5 VTSMARKIY-LRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQR 77 (90)
Q Consensus 5 ~ASi~RklY-l~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~ 77 (90)
-..|+..|| -.+++.+..|+...|-.+ +-+-.+++.||+.|||++.+ .++| .||++|+.
T Consensus 49 ~~~iL~~L~~~~~~~~~~ela~~l~i~~--------------~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~lT~~G~~ 114 (160)
T 3boq_A 49 KFDAMAQLARNPDGLSMGKLSGALKVTN--------------GNVSGLVNRLIKDGMVVKAMSADDRRSFSAKLTDAGLT 114 (160)
T ss_dssp HHHHHHHHHHCTTCEEHHHHHHHCSSCC--------------SCHHHHHHHHHHHTSEEEC--------CEEEECHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCCCh--------------hhHHHHHHHHHHCCCEEeecCCCCCCeEEEEEChhHHH
Confidence 346788885 468999999999876533 34667899999999998754 2333 59999999
Q ss_pred hHHHHHHHh
Q 034587 78 DLDQVAGRI 86 (90)
Q Consensus 78 ~lD~iA~~v 86 (90)
.++.+...+
T Consensus 115 ~~~~~~~~~ 123 (160)
T 3boq_A 115 TFKQASEAH 123 (160)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 998875543
No 69
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.50 E-value=0.0077 Score=40.77 Aligned_cols=64 Identities=17% Similarity=0.123 Sum_probs=49.7
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHhhH
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDL 79 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~l 79 (90)
..|++.|+ .|+...+.|++.-.+ -|.+.+-..|..||+.|||+... ...| .||++|++.+
T Consensus 29 l~IL~~L~-~g~~rf~eL~~~l~g-------------Is~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~~G~~l~ 94 (131)
T 4a5n_A 29 GILFYHMI-DGKKRFNEFRRICPS-------------ITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTEFGRTLE 94 (131)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHCTT-------------SCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECTTGGGGH
T ss_pred HHHHHHHh-cCCcCHHHHHHHhcc-------------cCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECHhHHHHH
Confidence 35778887 889999999987622 34579999999999999998664 2222 6999999988
Q ss_pred HHHH
Q 034587 80 DQVA 83 (90)
Q Consensus 80 D~iA 83 (90)
..+.
T Consensus 95 ~~l~ 98 (131)
T 4a5n_A 95 PIVL 98 (131)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7654
No 70
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.48 E-value=0.0043 Score=38.45 Aligned_cols=54 Identities=15% Similarity=0.065 Sum_probs=45.2
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHh
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQR 77 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~ 77 (90)
.|+..| .+++.+..|+..+|- |.+-++..|+.||+.|+|+... +...||+.|+.
T Consensus 35 ~Il~~L--~~~~~~~eLa~~l~i--------------s~~tv~~~L~~L~~~Glv~~~~-g~y~l~~~g~~ 88 (96)
T 1y0u_A 35 KILRML--DKGRSEEEIMQTLSL--------------SKKQLDYHLKVLEAGFCIERVG-ERWVVTDAGKI 88 (96)
T ss_dssp HHHHHH--HTTCCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEET-TEEEECTTTCC
T ss_pred HHHHHH--cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEC-CEEEECCCchH
Confidence 467777 899999999998865 3468999999999999999877 66789999864
No 71
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=96.47 E-value=0.0057 Score=42.96 Aligned_cols=67 Identities=10% Similarity=0.121 Sum_probs=52.3
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CCe----eeCcchHhh
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQRD 78 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~~ 78 (90)
-..||..|+-.+++.+..|+...|-. .+-+-.+|+.||+.|||+..++ ++| .||++|+..
T Consensus 50 q~~iL~~L~~~~~~t~~eLa~~l~i~--------------~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l~LT~~G~~~ 115 (207)
T 2fxa_A 50 EHHILWIAYQLNGASISEIAKFGVMH--------------VSTAFNFSKKLEERGYLRFSKRLNDKRNTYVQLTEEGTEV 115 (207)
T ss_dssp HHHHHHHHHHHTSEEHHHHHHHTTCC--------------HHHHHHHHHHHHHHTSEEEECC------CEEEECHHHHHH
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEEEecCCCCCceEEEEECHHHHHH
Confidence 45688888888999999999988653 3567779999999999987553 344 599999999
Q ss_pred HHHHHHH
Q 034587 79 LDQVAGR 85 (90)
Q Consensus 79 lD~iA~~ 85 (90)
++.+...
T Consensus 116 ~~~~~~~ 122 (207)
T 2fxa_A 116 FWSLLEE 122 (207)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
No 72
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=96.46 E-value=0.0033 Score=40.39 Aligned_cols=68 Identities=13% Similarity=0.118 Sum_probs=46.3
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe-----eeCcchHhhH
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR-----RITSSGQRDL 79 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR-----~lT~~G~~~l 79 (90)
.||.-|.- +|.--..+.+.... +..-+.+.+-.+|+.||+.|||+... .+|| .||++|+..+
T Consensus 13 ~IL~~L~~-~~~~gyel~~~l~~----------~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT~~G~~~l 81 (108)
T 3l7w_A 13 LILAIVSK-HDSYGYDISQTIKL----------IASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLTDSGEKHL 81 (108)
T ss_dssp HHHHHHHH-SCEEHHHHHHHHTT----------TCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEECHHHHHHH
T ss_pred HHHHHHHc-CCCcHHHHHHHHHH----------HhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEECHHHHHHH
Confidence 35555553 55544455555443 12356678999999999999998654 2454 4999999999
Q ss_pred HHHHHH
Q 034587 80 DQVAGR 85 (90)
Q Consensus 80 D~iA~~ 85 (90)
++....
T Consensus 82 ~~~~~~ 87 (108)
T 3l7w_A 82 VYLTKE 87 (108)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 73
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=96.44 E-value=0.0022 Score=41.16 Aligned_cols=66 Identities=11% Similarity=0.087 Sum_probs=51.1
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CCe----eeCcchHh
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~GR----~lT~~G~~ 77 (90)
.-..|+..|+-.+++.+..|+...|- +.+-+-.+++.||+.|||+..++ ++| .||++|+.
T Consensus 41 ~~~~iL~~l~~~~~~~~~~la~~l~~--------------~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~LT~~G~~ 106 (147)
T 1z91_A 41 PQYLALLLLWEHETLTVKKMGEQLYL--------------DSGTLTPMLKRMEQQGLITRKRSEEDERSVLISLTEDGAL 106 (147)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHTTTC--------------CHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEEECHHHHS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCC--------------CcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEEECHhHHH
Confidence 34567888888889999999997753 23678889999999999987653 343 58999999
Q ss_pred hHHHHH
Q 034587 78 DLDQVA 83 (90)
Q Consensus 78 ~lD~iA 83 (90)
.++.+.
T Consensus 107 ~~~~~~ 112 (147)
T 1z91_A 107 LKEKAV 112 (147)
T ss_dssp GGGGTT
T ss_pred HHHHHH
Confidence 887653
No 74
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.43 E-value=0.0064 Score=39.22 Aligned_cols=62 Identities=11% Similarity=0.124 Sum_probs=49.4
Q ss_pred HHHHHHhhcCCCc--hhHHHHHh-cCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCeeeCcchHhhHHH
Q 034587 7 SMARKIYLRQGLG--VGSFRRIY-GGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRRITSSGQRDLDQ 81 (90)
Q Consensus 7 Si~RklYl~g~vG--V~~Lr~~Y-Gg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR~lT~~G~~~lD~ 81 (90)
.|++.++ .|+.. ++.|++.. |- |.+.+-..|+.||+.|||++.. ..-..||++|++.++.
T Consensus 31 ~IL~~L~-~g~~~~~~~eL~~~l~gi--------------s~~~ls~~L~~Le~~GlV~r~~~r~~~y~LT~~G~~l~~~ 95 (111)
T 3df8_A 31 LIISVLG-NGSTRQNFNDIRSSIPGI--------------SSTILSRRIKDLIDSGLVERRSGQITTYALTEKGMNVRNS 95 (111)
T ss_dssp HHHHHHT-SSSSCBCHHHHHHTSTTC--------------CHHHHHHHHHHHHHTTSEEEEESSSEEEEECHHHHHHHHH
T ss_pred HHHHHHh-cCCCCCCHHHHHHHccCC--------------CHHHHHHHHHHHHHCCCEEEeecCcEEEEECccHHHHHHH
Confidence 4777777 88888 99999866 33 4578999999999999999764 2345899999988776
Q ss_pred HH
Q 034587 82 VA 83 (90)
Q Consensus 82 iA 83 (90)
+.
T Consensus 96 l~ 97 (111)
T 3df8_A 96 LM 97 (111)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 75
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=96.39 E-value=0.014 Score=40.30 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=55.9
Q ss_pred ChhhHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC---C-----CeeeC
Q 034587 1 MSELVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK---G-----GRRIT 72 (90)
Q Consensus 1 ~~~r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~---~-----GR~lT 72 (90)
||.+-+ ||.-|. .+|.-...|.+.+... -.++...|-+.|-..|+.||+.|||+.... + =..||
T Consensus 1 M~l~~~-iL~lL~-~~~~~gyel~~~l~~~------~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT 72 (179)
T 1yg2_A 1 MSLPHV-ILTVLS-TRDATGYDITKEFSAS------IGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSIT 72 (179)
T ss_dssp -CHHHH-HHHHHH-HCCBCHHHHHHHHTTG------GGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEEC
T ss_pred CchHHH-HHHHHh-cCCCCHHHHHHHHHHH------hCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeC
Confidence 454443 666665 4888888999988642 134566777899999999999999985431 2 25799
Q ss_pred cchHhhHHHHHHH
Q 034587 73 SSGQRDLDQVAGR 85 (90)
Q Consensus 73 ~~G~~~lD~iA~~ 85 (90)
++|+..+.+...+
T Consensus 73 ~~G~~~l~~~~~~ 85 (179)
T 1yg2_A 73 QAGRSALGEWFDQ 85 (179)
T ss_dssp HHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhC
Confidence 9999999886554
No 76
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=96.32 E-value=0.012 Score=41.98 Aligned_cols=68 Identities=13% Similarity=0.185 Sum_probs=52.4
Q ss_pred hhHHHHHHHHhhc--CCCch--hHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhh
Q 034587 3 ELVTSMARKIYLR--QGLGV--GSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRD 78 (90)
Q Consensus 3 ~r~ASi~RklYl~--g~vGV--~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~ 78 (90)
...-.+++-||.- .++.+ ..|+...|-. .+-+..+|+.||+.|||+..++.+=.||++|+..
T Consensus 6 ~~~e~~L~~L~~l~~~~~~~~~~~La~~l~vs--------------~~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~ 71 (230)
T 1fx7_A 6 DTTEMYLRTIYDLEEEGVTPLRARIAERLDQS--------------GPTVSQTVSRMERDGLLRVAGDRHLELTEKGRAL 71 (230)
T ss_dssp SHHHHHHHHHHHHHHHTSCCCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEECTTSCEEECHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCcHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEeCCccEEECHHHHHH
Confidence 3445567777752 35556 8898887653 3678899999999999998887778899999999
Q ss_pred HHHHHH
Q 034587 79 LDQVAG 84 (90)
Q Consensus 79 lD~iA~ 84 (90)
++.+..
T Consensus 72 ~~~~~~ 77 (230)
T 1fx7_A 72 AIAVMR 77 (230)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887643
No 77
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=96.32 E-value=0.011 Score=38.75 Aligned_cols=68 Identities=15% Similarity=0.124 Sum_probs=53.3
Q ss_pred hhhHHHHHHHHhhcCCCchhHHHH-HhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHH
Q 034587 2 SELVTSMARKIYLRQGLGVGSFRR-IYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLD 80 (90)
Q Consensus 2 ~~r~ASi~RklYl~g~vGV~~Lr~-~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD 80 (90)
+.--.|||+.|+-++++.+..|+. .-+-.+ +.+=.-++-||+.|||+.+. ++=.||++|+..+.
T Consensus 15 ~~~QfsiL~~L~~~~~~t~~~Lae~~l~~dr--------------stvsrnl~~L~r~GlVe~~~-~Dl~LT~~G~~~l~ 79 (95)
T 1bja_A 15 NEKTATILITIAKKDFITAAEVREVHPDLGN--------------AVVNSNIGVLIKKGLVEKSG-DGLIITGEAQDIIS 79 (95)
T ss_dssp CHHHHHHHHHHHHSTTBCHHHHHHTCTTSCH--------------HHHHHHHHHHHTTTSEEEET-TEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCHHHHHHHHhcccH--------------HHHHHHHHHHHHCCCeecCC-CCeeeCHhHHHHHH
Confidence 344579999999999999999998 544432 45556789999999999443 35679999999998
Q ss_pred HHHH
Q 034587 81 QVAG 84 (90)
Q Consensus 81 ~iA~ 84 (90)
..+.
T Consensus 80 ~a~~ 83 (95)
T 1bja_A 80 NAAT 83 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8754
No 78
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=96.31 E-value=0.004 Score=39.30 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=43.0
Q ss_pred HHHHHHHHhhcC-CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc----CCCCeeeC
Q 034587 5 VTSMARKIYLRQ-GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE----PKGGRRIT 72 (90)
Q Consensus 5 ~ASi~RklYl~g-~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~----~~~GR~lT 72 (90)
...|+..++-.| ++.+..|+..+|-. .+-+|.+|+.|++.|||+.. +.+|+.+.
T Consensus 20 ~l~Il~~l~~~g~~~s~~eLa~~lgvs--------------~~tV~~~L~~L~~~GlV~~~~~~~~~~g~~v~ 78 (110)
T 1q1h_A 20 VIDVLRILLDKGTEMTDEEIANQLNIK--------------VNDVRKKLNLLEEQGFVSYRKTRDKDSGWFIY 78 (110)
T ss_dssp THHHHHHHHHHCSCBCHHHHHHTTTSC--------------HHHHHHHHHHHHHHTSCEEEEEC---CCCCEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEEecccCCCceEEE
Confidence 446788887777 89999999998874 37899999999999999987 66675554
No 79
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.24 E-value=0.012 Score=39.05 Aligned_cols=60 Identities=15% Similarity=0.086 Sum_probs=48.5
Q ss_pred HHHHHHhhcCCCchhHHHHHh--cCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHH
Q 034587 7 SMARKIYLRQGLGVGSFRRIY--GGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLD 80 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~Y--Gg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD 80 (90)
.||..|--+|+..+..|.... |- |...++.-|+.||+.|||+....+=-.||++|+..+.
T Consensus 17 ~IL~~L~~~g~~s~~eLA~~l~~gi--------------S~~aVs~rL~~Le~~GLV~~~~rg~Y~LT~~G~~~l~ 78 (111)
T 3b73_A 17 RILEIIHEEGNGSPKELEDRDEIRI--------------SKSSVSRRLKKLADHDLLQPLANGVYVITEEGEAYLN 78 (111)
T ss_dssp HHHHHHHHHSCBCHHHHHTSTTCCS--------------CHHHHHHHHHHHHHTTSEEECSTTCEEECHHHHHHHT
T ss_pred HHHHHHHHcCCCCHHHHHHHHhcCC--------------CHHHHHHHHHHHHHCCCEEecCCceEEECchHHHHHH
Confidence 467666667999999999866 33 4478999999999999999875444799999998875
No 80
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=96.19 E-value=0.005 Score=39.81 Aligned_cols=51 Identities=14% Similarity=0.175 Sum_probs=43.6
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCeeeCcchHhhHHHHH
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRRITSSGQRDLDQVA 83 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR~lT~~G~~~lD~iA 83 (90)
.+..|+..||- |..-+|.+|+.||+.|||+..+ ..|-.+++....++..+.
T Consensus 45 s~~eLa~~lgV--------------Sr~tVr~al~~L~~~GlI~~~~gG~~G~~V~~~~~~~~~~~~ 97 (102)
T 2b0l_A 45 VASKIADRVGI--------------TRSVIVNALRKLESAGVIESRSLGMKGTYIKVLNNKFLIELE 97 (102)
T ss_dssp CHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECSSSCEEEEECCHHHHHHHH
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEeCCCCcEEEecCCHHHHHHHH
Confidence 78888888876 3579999999999999999888 569999998888887764
No 81
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=96.18 E-value=0.038 Score=36.72 Aligned_cols=66 Identities=18% Similarity=0.179 Sum_probs=46.0
Q ss_pred HHHHHHhhcC-CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHhhH
Q 034587 7 SMARKIYLRQ-GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQRDL 79 (90)
Q Consensus 7 Si~RklYl~g-~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~~l 79 (90)
.||..|+-.+ +.....|+...|-.+ +-+=.+++.||+.|||++.+ +++| .||++|+..+
T Consensus 35 ~vL~~L~~~~~~~~~~eLa~~l~~~~--------------~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l~LT~~G~~~~ 100 (151)
T 4aik_A 35 VTLYNINRLPPEQSQIQLAKAIGIEQ--------------PSLVRTLDQLEEKGLITRHTSANDRRAKRIKLTEQSSPII 100 (151)
T ss_dssp HHHHHHHHSCTTSCHHHHHHHHTSCH--------------HHHHHHHHHHHHTTSEEEEECSSCTTCEEEEECGGGHHHH
T ss_pred HHHHHHHHcCCCCcHHHHHHHHCcCH--------------HHHHHHHHHHHhCCCeEeecCCCCCcchhhhcCHHHHHHH
Confidence 4566666543 344567777666532 56677899999999998544 4455 4799999999
Q ss_pred HHHHHHh
Q 034587 80 DQVAGRI 86 (90)
Q Consensus 80 D~iA~~v 86 (90)
+++...+
T Consensus 101 ~~~~~~~ 107 (151)
T 4aik_A 101 EQVDGVI 107 (151)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8876543
No 82
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=96.16 E-value=0.011 Score=37.28 Aligned_cols=69 Identities=9% Similarity=0.065 Sum_probs=52.7
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCe----eeCcchHhhH
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR----RITSSGQRDL 79 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR----~lT~~G~~~l 79 (90)
.-..|+..|+-.+|+.+..|....+-. .++ +.+-+-.+|+.||+.|||+..+++.| .||++|+...
T Consensus 11 ~~~~vL~~l~~~~~~t~~ela~~l~~~--~~~--------s~~tv~~~l~~L~~~Glv~r~~~~rr~~~~~lT~~g~~~~ 80 (123)
T 1okr_A 11 AEWEVMNIIWMKKYASANNIIEEIQMQ--KDW--------SPKTIRTLITRLYKKGFIDRKKDNKIFQYYSLVEESDIKY 80 (123)
T ss_dssp HHHHHHHHHHHHSSEEHHHHHHHHHHH--CCC--------CHHHHHHHHHHHHHHTSEEEEEETTEEEEEESSCHHHHHH
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHHhcc--CCC--------cHhhHHHHHHHHHHCCCeEEEecCCeEEEEEecCHHHHHH
Confidence 345688888888999999999988742 111 33678899999999999998775332 3799999877
Q ss_pred HHH
Q 034587 80 DQV 82 (90)
Q Consensus 80 D~i 82 (90)
+.+
T Consensus 81 ~~~ 83 (123)
T 1okr_A 81 KTS 83 (123)
T ss_dssp HHH
T ss_pred HHH
Confidence 655
No 83
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.11 E-value=0.045 Score=33.90 Aligned_cols=61 Identities=15% Similarity=0.217 Sum_probs=46.6
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCC---eeeCcchHhhHHHH
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGG---RRITSSGQRDLDQV 82 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~lD~i 82 (90)
.|++.| ..+|..++.|....|-.+ +.+.+.|+.||+.|||+...++. ..||+.+-..+=..
T Consensus 27 ~Il~~L-~~~~~~~~ela~~l~is~--------------~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~~~~~ 90 (102)
T 3pqk_A 27 MLVCTL-VEGEFSVGELEQQIGIGQ--------------PTLSQQLGVLRESGIVETRRNIKQIFYRLTEAKAAQLVNA 90 (102)
T ss_dssp HHHHHH-HTCCBCHHHHHHHHTCCT--------------THHHHHHHHHHHTTSEEEECSSSCCEEEECSSTHHHHHHH
T ss_pred HHHHHH-HhCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCeEEEEeCCEEEEEECcHHHHHHHHH
Confidence 577777 478999999999987633 57899999999999998776432 56888766554333
No 84
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=96.06 E-value=0.017 Score=38.31 Aligned_cols=64 Identities=16% Similarity=0.244 Sum_probs=38.7
Q ss_pred HHHHHHhhcC-----CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc-CCCCe----eeCcchH
Q 034587 7 SMARKIYLRQ-----GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE-PKGGR----RITSSGQ 76 (90)
Q Consensus 7 Si~RklYl~g-----~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~-~~~GR----~lT~~G~ 76 (90)
+||..|+..+ ++.+..|+...|-.+ +-+=.+++.||+.|||+.. +.++| .||++|+
T Consensus 37 ~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~--------------~tvsr~v~~Le~~glVr~~~~~DrR~~~v~LT~~G~ 102 (148)
T 4fx0_A 37 STLAVISLSEGSAGIDLTMSELAARIGVER--------------TTLTRNLEVMRRDGLVRVMAGADARCKRIELTAKGR 102 (148)
T ss_dssp HHHHHHHC---------CHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSBC-----------CCBCHHHH
T ss_pred HHHHHHHHhcCCCCCCcCHHHHHHHHCCCh--------------hhHHHHHHHHHHCCCEEeeCCCCCCeeEEEECHHHH
Confidence 3455555442 356666766655432 4566789999999999643 23344 5899999
Q ss_pred hhHHHHHH
Q 034587 77 RDLDQVAG 84 (90)
Q Consensus 77 ~~lD~iA~ 84 (90)
..++++..
T Consensus 103 ~~~~~~~~ 110 (148)
T 4fx0_A 103 AALQKAVP 110 (148)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99988754
No 85
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=96.06 E-value=0.0072 Score=40.27 Aligned_cols=63 Identities=21% Similarity=0.208 Sum_probs=48.7
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CC----eeeCcchHhhHH
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GG----RRITSSGQRDLD 80 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~G----R~lT~~G~~~lD 80 (90)
.||..|+ .|+..+..|.+..++ -+.+.+-..|+.||+.|||+.... .+ -.||++|+..++
T Consensus 39 ~IL~~L~-~g~~~~~eLa~~l~g-------------is~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~G~~l~~ 104 (131)
T 1yyv_A 39 LILVALR-DGTHRFSDLRRXMGG-------------VSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLTPLGEQVSD 104 (131)
T ss_dssp HHHHHGG-GCCEEHHHHHHHSTT-------------CCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEECHHHHHHHH
T ss_pred HHHHHHH-cCCCCHHHHHHHhcc-------------CCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEECccHHHHHH
Confidence 4777887 899999999997731 245789999999999999986542 23 369999998776
Q ss_pred HHH
Q 034587 81 QVA 83 (90)
Q Consensus 81 ~iA 83 (90)
.+.
T Consensus 105 ~l~ 107 (131)
T 1yyv_A 105 XVA 107 (131)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 86
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=96.02 E-value=0.025 Score=36.69 Aligned_cols=60 Identities=12% Similarity=0.108 Sum_probs=46.7
Q ss_pred hHHHHHHHHhhc---CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCeeeCcchHh
Q 034587 4 LVTSMARKIYLR---QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRRITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~---g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR~lT~~G~~ 77 (90)
.|-.++..|..+ +++.+..|+..+|-. -..++++|++|+++|||+... .||..|+.....
T Consensus 10 ~al~iL~~la~~~~~~~~s~~ela~~~~i~--------------~~~v~~il~~L~~~Glv~~~~g~~ggy~L~~~~~~ 74 (129)
T 2y75_A 10 YGLTIMIELAKKHGEGPTSLKSIAQTNNLS--------------EHYLEQLVSPLRNAGLVKSIRGAYGGYVLGSEPDA 74 (129)
T ss_dssp HHHHHHHHHHHTTTSCCBCHHHHHHHTTSC--------------HHHHHHHHHHHHHTTSEEEC----CCEEESSCGGG
T ss_pred HHHHHHHHHHhCCCCCcCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCceEecCCCCCceEeCCCHHH
Confidence 466777777764 579999999988764 379999999999999998764 478899876543
No 87
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=96.00 E-value=0.01 Score=38.71 Aligned_cols=44 Identities=20% Similarity=0.235 Sum_probs=33.7
Q ss_pred cCchhHHHHHHHHHHhCCcccccC---CCCe-----eeCcchHhhHHHHHHH
Q 034587 42 KSSGAIARHILQQLQNMNIIDIEP---KGGR-----RITSSGQRDLDQVAGR 85 (90)
Q Consensus 42 ~asg~iiR~~LqqLE~~glV~k~~---~~GR-----~lT~~G~~~lD~iA~~ 85 (90)
.-+.+.+-.+|+.||+.|||+... .+|+ .||++|++.++.....
T Consensus 44 ~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~ 95 (116)
T 3f8b_A 44 ELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTEIGHENMRLAFES 95 (116)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECHHHHHHHHHHHHH
Confidence 456688999999999999998652 2342 6999999999886554
No 88
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=95.91 E-value=0.017 Score=41.19 Aligned_cols=68 Identities=12% Similarity=0.173 Sum_probs=52.0
Q ss_pred hhHHHHHHHHhhc--CCCch--hHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhh
Q 034587 3 ELVTSMARKIYLR--QGLGV--GSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRD 78 (90)
Q Consensus 3 ~r~ASi~RklYl~--g~vGV--~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~ 78 (90)
...-.+|+-||.- .++.+ ..|+...|-.+ +-+..+|+.||+.|||+..++.+=.||++|+..
T Consensus 6 ~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~--------------~tvs~~l~~Le~~GlV~r~~~~~v~LT~~G~~~ 71 (226)
T 2qq9_A 6 ATTEMYLRTIYELEEEGVTPLRARIAERLEQSG--------------PTVSQTVARMERDGLVVVASDRSLQMTPTGRTL 71 (226)
T ss_dssp HHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSEEECTTSBEEECHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCH--------------HHHHHHHHHHHHCCCEEEeCCCCeEECHHHHHH
Confidence 3445678888873 23444 88888776532 567779999999999998887778999999998
Q ss_pred HHHHHH
Q 034587 79 LDQVAG 84 (90)
Q Consensus 79 lD~iA~ 84 (90)
..++..
T Consensus 72 ~~~~~~ 77 (226)
T 2qq9_A 72 ATAVMR 77 (226)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887764
No 89
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=95.79 E-value=0.039 Score=33.86 Aligned_cols=66 Identities=12% Similarity=0.107 Sum_probs=49.7
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCC---eeeCcchHhhHHHHH
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGG---RRITSSGQRDLDQVA 83 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~lD~iA 83 (90)
.|+..|. +++..+..|+...|- |.+-+.+-|+.||+.|||+...++. ..||+.+-..+-...
T Consensus 27 ~Il~~L~-~~~~~~~ela~~l~i--------------s~~tvs~~L~~L~~~Glv~~~~~g~~~~y~l~~~~~~~l~~~l 91 (98)
T 3jth_A 27 QILCMLH-NQELSVGELCAKLQL--------------SQSALSQHLAWLRRDGLVTTRKEAQTVYYTLKSEEVKAMIKLL 91 (98)
T ss_dssp HHHHHTT-TSCEEHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEECCTTCCEEEECCHHHHHHHHHH
T ss_pred HHHHHHh-cCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEeCCEEEEEECHHHHHHHHHHH
Confidence 4666665 489999999998865 3468999999999999998776432 358888877666665
Q ss_pred HHhh
Q 034587 84 GRIV 87 (90)
Q Consensus 84 ~~v~ 87 (90)
.+++
T Consensus 92 ~~~~ 95 (98)
T 3jth_A 92 HSLY 95 (98)
T ss_dssp HHHC
T ss_pred HHHh
Confidence 5554
No 90
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=95.70 E-value=0.021 Score=38.40 Aligned_cols=67 Identities=13% Similarity=0.143 Sum_probs=49.0
Q ss_pred HHHHHHHHhhcCC---CchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC--CCe----eeCcch
Q 034587 5 VTSMARKIYLRQG---LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK--GGR----RITSSG 75 (90)
Q Consensus 5 ~ASi~RklYl~g~---vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~--~GR----~lT~~G 75 (90)
-..||..|+-.++ +.+..|+...|-.+ +-+-.+|+.||+.|||+..++ ++| .||++|
T Consensus 71 ~~~iL~~L~~~~~~~~~t~~eLa~~l~is~--------------~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~~LT~~G 136 (181)
T 2fbk_A 71 GWDLLLTLYRSAPPEGLRPTELSALAAISG--------------PSTSNRIVRLLEKGLIERREDERDRRSASIRLTPQG 136 (181)
T ss_dssp HHHHHHHHHHHCCSSCBCHHHHHHHCSCCS--------------GGGSSHHHHHHHHTSEECCC-------CCBEECHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHCCCH--------------HHHHHHHHHHHHCcCEEecCCCCCCCeeEEEECHHH
Confidence 3567888888775 89999999776432 344558999999999987642 333 699999
Q ss_pred HhhHHHHHHH
Q 034587 76 QRDLDQVAGR 85 (90)
Q Consensus 76 ~~~lD~iA~~ 85 (90)
+..++++...
T Consensus 137 ~~~~~~~~~~ 146 (181)
T 2fbk_A 137 RALVTHLLPA 146 (181)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999886554
No 91
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.68 E-value=0.019 Score=39.22 Aligned_cols=65 Identities=12% Similarity=0.203 Sum_probs=51.5
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCC----eeeCcchHhhHHH
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGG----RRITSSGQRDLDQ 81 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~G----R~lT~~G~~~lD~ 81 (90)
-.|++.|. ++|..+..|+...|-. .+-+.+-|+.||++|||+...+ | -.||+.|...+-.
T Consensus 61 ~~IL~~L~-~~~~t~~eLa~~lgls--------------~stvs~hL~~L~~aGlV~~~~~-Gr~~~y~lt~~~~~~l~~ 124 (151)
T 3f6v_A 61 RRLVQLLT-SGEQTVNNLAAHFPAS--------------RSAISQHLRVLTEAGLVTPRKD-GRFRYYRLDPQGLAQLRA 124 (151)
T ss_dssp HHHHHHGG-GCCEEHHHHHTTSSSC--------------HHHHHHHHHHHHHTTSEEEEEE-TTEEEEEECHHHHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEEec-CCEEEEEEChHHHHHHHH
Confidence 35788887 8999999999987753 3689999999999999987754 4 4699999877766
Q ss_pred HHHHh
Q 034587 82 VAGRI 86 (90)
Q Consensus 82 iA~~v 86 (90)
+..++
T Consensus 125 ~l~~~ 129 (151)
T 3f6v_A 125 LFDSF 129 (151)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 92
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=95.63 E-value=0.037 Score=36.06 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=48.4
Q ss_pred HHHHHHHhhc------CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC-CCe---eeCcch
Q 034587 6 TSMARKIYLR------QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK-GGR---RITSSG 75 (90)
Q Consensus 6 ASi~RklYl~------g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~-~GR---~lT~~G 75 (90)
-++++.|+.- +++-...|++.-+- +.+-++..|..||+.|||+..+. .|| .||++|
T Consensus 19 ~~vL~~L~~~~~~~~g~~~s~~eLa~~l~l--------------~~stLsR~l~rLe~~GLV~r~~~~D~R~~v~LT~~G 84 (96)
T 2obp_A 19 VEVLLVLREAGIENGATPWSLPKIAKRAQL--------------PMSVLRRVLTQLQAAGLADVSVEADGRGHASLTQEG 84 (96)
T ss_dssp HHHHHHHHHHTSSTTCCCCBHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEEECTTSCEEEEECHHH
T ss_pred HHHHHHHHHHHhhCCCCCcCHHHHHHHhCC--------------chhhHHHHHHHHHHCCCEEeecCCCCceeEEECHHH
Confidence 3567777765 67778888876554 45789999999999999986442 344 599999
Q ss_pred HhhHHHH
Q 034587 76 QRDLDQV 82 (90)
Q Consensus 76 ~~~lD~i 82 (90)
+..+++.
T Consensus 85 ~~~l~~~ 91 (96)
T 2obp_A 85 AALAAQL 91 (96)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9998865
No 93
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=95.59 E-value=0.041 Score=40.40 Aligned_cols=66 Identities=14% Similarity=0.226 Sum_probs=53.8
Q ss_pred hhhHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC-CCeeeCcchHhhHH
Q 034587 2 SELVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK-GGRRITSSGQRDLD 80 (90)
Q Consensus 2 ~~r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~-~GR~lT~~G~~~lD 80 (90)
+...-.||..|.-++++.+..|++..|-. .+-+...|+.||+.|||+..+. .--.||++|+....
T Consensus 151 ~~~~~~IL~~L~~~~~~s~~eLA~~lgls--------------ksTv~r~L~~Le~~GlV~r~~r~~~~~LT~~G~~l~~ 216 (244)
T 2wte_A 151 SREEMKLLNVLYETKGTGITELAKMLDKS--------------EKTLINKIAELKKFGILTQKGKDRKVELNELGLNVIK 216 (244)
T ss_dssp CHHHHHHHHHHHHHTCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEETTTTEEEECHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEeCCccEEEECHHHHHHHH
Confidence 34566789988889999999999999863 3678889999999999998643 34689999999765
Q ss_pred H
Q 034587 81 Q 81 (90)
Q Consensus 81 ~ 81 (90)
.
T Consensus 217 ~ 217 (244)
T 2wte_A 217 L 217 (244)
T ss_dssp H
T ss_pred H
Confidence 4
No 94
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=95.51 E-value=0.018 Score=40.30 Aligned_cols=51 Identities=22% Similarity=0.251 Sum_probs=42.8
Q ss_pred CchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHH
Q 034587 18 LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQV 82 (90)
Q Consensus 18 vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~i 82 (90)
+-...|+..||- |...+|.+|+.||..|||+..+..|-.+++-...++..+
T Consensus 40 L~E~~La~~lgV--------------SRtpVREAl~~L~~eGlv~~~~~~G~~V~~~~~~~~~e~ 90 (222)
T 3ihu_A 40 LVETDLVAHFGV--------------GRNSVREALQRLAAEGIVDLQRHRGAVIRRLSLQETLDV 90 (222)
T ss_dssp ECHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECSTTCEEECCCCHHHHHHH
T ss_pred cCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEecCCCeEEecCCHHHHHHH
Confidence 446779999986 458999999999999999999988999988777766654
No 95
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=95.49 E-value=0.024 Score=43.18 Aligned_cols=68 Identities=9% Similarity=0.170 Sum_probs=51.6
Q ss_pred HHHHHHHhhc--CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc--CCCCe----eeCcchHh
Q 034587 6 TSMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE--PKGGR----RITSSGQR 77 (90)
Q Consensus 6 ASi~RklYl~--g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~--~~~GR----~lT~~G~~ 77 (90)
-.||+.|+-+ +++.+..|+...+-. .+-+=.+|+.||+.|||++. ++..| .||++|+.
T Consensus 407 ~~vl~~l~~~~~~~~~~~~l~~~~~~~--------------~~~~t~~~~~le~~g~v~r~~~~~D~R~~~i~lT~~g~~ 472 (487)
T 1hsj_A 407 IYILNHILRSESNEISSKEIAKCSEFK--------------PYYLTKALQKLKDLKLLSKKRSLQDERTVIVYVTDTQKA 472 (487)
T ss_dssp HHHHHHHHTCSCSEEEHHHHHHSSCCC--------------HHHHHHHHHHHHTTTTSCCEECCSSSSCCEEECCSSHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEeecCCCCCCCeEEEEECHHHHH
Confidence 3578888888 888899998855443 24566789999999999864 34455 37999999
Q ss_pred hHHHHHHHhh
Q 034587 78 DLDQVAGRIV 87 (90)
Q Consensus 78 ~lD~iA~~v~ 87 (90)
.++++...+.
T Consensus 473 ~~~~~~~~~~ 482 (487)
T 1hsj_A 473 NIQKLISELE 482 (487)
T ss_dssp HHHHHHHHHG
T ss_pred HHHHHHHHHH
Confidence 9998876653
No 96
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=95.42 E-value=0.093 Score=33.03 Aligned_cols=66 Identities=14% Similarity=0.122 Sum_probs=48.8
Q ss_pred hHHHHHHHHhh-cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--C--CCeeeCcchHhh
Q 034587 4 LVTSMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--K--GGRRITSSGQRD 78 (90)
Q Consensus 4 r~ASi~RklYl-~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~--~GR~lT~~G~~~ 78 (90)
--..++.-|++ .+|+.+..|+...|-. .+-+..+|+.||+.|||+..+ . ....++..|...
T Consensus 27 ~~~~il~~L~~~~~~~t~~ela~~l~~~--------------~stvs~~l~~L~~~G~v~r~~~~~d~r~~~~~~~~~~~ 92 (152)
T 1ku9_A 27 SVGAVYAILYLSDKPLTISDIMEELKIS--------------KGNVSMSLKKLEELGFVRKVWIKGERKNYYEAVDGFSS 92 (152)
T ss_dssp HHHHHHHHHHHCSSCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEECCTTCSSCEEEECCHHHH
T ss_pred hHHHHHHHHHHcCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEEecCCCceEEEeecchHHH
Confidence 34567777776 6899999999998753 357889999999999999763 2 234678777655
Q ss_pred HHHHH
Q 034587 79 LDQVA 83 (90)
Q Consensus 79 lD~iA 83 (90)
++.+.
T Consensus 93 ~~~~~ 97 (152)
T 1ku9_A 93 IKDIA 97 (152)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55444
No 97
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=95.39 E-value=0.03 Score=36.55 Aligned_cols=70 Identities=16% Similarity=0.115 Sum_probs=47.1
Q ss_pred HHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC---CCC-----eeeCcchHhhH
Q 034587 8 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP---KGG-----RRITSSGQRDL 79 (90)
Q Consensus 8 i~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~---~~G-----R~lT~~G~~~l 79 (90)
||--|. .+|.---.|.+.... . .+..-+.+.+-.+|+.||+.|||+... .+| -.||++|+..+
T Consensus 14 IL~~L~-~~~~~Gyei~~~l~~---~-----~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l 84 (115)
T 4esb_A 14 ILYIIS-QEEVYGYELSTKLNK---H-----GFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITDKGLEQL 84 (115)
T ss_dssp HHHHHH-HSCEEHHHHHHHHHH---T-----TCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECHHHHHHH
T ss_pred HHHHHH-cCCCCHHHHHHHHHH---c-----CCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECHHHHHHH
Confidence 444444 455544455555543 1 244567789999999999999998542 234 24999999999
Q ss_pred HHHHHHh
Q 034587 80 DQVAGRI 86 (90)
Q Consensus 80 D~iA~~v 86 (90)
+......
T Consensus 85 ~~~~~~~ 91 (115)
T 4esb_A 85 EEFKQSW 91 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876553
No 98
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=95.32 E-value=0.024 Score=35.99 Aligned_cols=61 Identities=16% Similarity=0.154 Sum_probs=45.9
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCC---eeeCcchHhhHHHH
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGG---RRITSSGQRDLDQV 82 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~lD~i 82 (90)
.|+.-|. .++..+..|+...|-. .+-+...|+.||+.|||+...++. ..||+++...+=+.
T Consensus 29 ~IL~~L~-~~~~s~~eLa~~lgis--------------~stvs~~L~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~ 92 (108)
T 2kko_A 29 QILDLLA-QGERAVEAIATATGMN--------------LTTASANLQALKSGGLVEARREGTRQYYRIAGEDVARLFAL 92 (108)
T ss_dssp HHHHHHT-TCCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHHTSEEEEEETTEEEEEESCHHHHHHHHH
T ss_pred HHHHHHH-cCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHHHHH
Confidence 4666665 6899999999988753 368999999999999998776432 36899886554433
No 99
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=95.30 E-value=0.022 Score=36.69 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=42.2
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHH
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQV 82 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~i 82 (90)
.+..|+..||- |...+|.+|+.||+.|||+..+..|-.+++....++..+
T Consensus 35 s~~~La~~~~v--------------Sr~tvr~al~~L~~~Gli~~~~~~G~~V~~~~~~~~~~~ 84 (113)
T 3tqn_A 35 SIRKISTEYQI--------------NPLTVSKAYQSLLDDNVIEKRRGLGMLVKAGARQRLLTQ 84 (113)
T ss_dssp CHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECTTHHHHHHHH
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEecCCeEEEeCCchHHHHHH
Confidence 67889999986 347999999999999999999888999998877665543
No 100
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=95.20 E-value=0.092 Score=32.89 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=45.1
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCC---eeeCcchHhhH
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGG---RRITSSGQRDL 79 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~l 79 (90)
-.|+..|. +++..+..|+...|-. .+-+.+.|+.||+.|||+...++. -.||+.+-..+
T Consensus 29 ~~IL~~L~-~~~~~~~ela~~l~is--------------~stvs~~L~~L~~~Glv~~~~~gr~~~y~l~~~~~~~~ 90 (106)
T 1r1u_A 29 IRIMELLS-VSEASVGHISHQLNLS--------------QSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATM 90 (106)
T ss_dssp HHHHHHHH-HCCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEEETTEEEEEESSHHHHHH
T ss_pred HHHHHHHH-hCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCeEEEEeCCEEEEEEChHHHHHH
Confidence 35777776 8999999999988763 368899999999999998776432 35788775443
No 101
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=95.20 E-value=0.016 Score=38.24 Aligned_cols=40 Identities=13% Similarity=0.076 Sum_probs=34.1
Q ss_pred chhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHHH
Q 034587 44 SGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVA 83 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~iA 83 (90)
|...+|.+|+.||+.|||+..+..|-.+++....++..+.
T Consensus 48 Sr~tvr~Al~~L~~~G~i~~~~~~G~~V~~~~~~~~~~~~ 87 (126)
T 3ic7_A 48 NANTVMRSYEYLQSQEVIYNKRGIGFFVASGAKMLIHSLR 87 (126)
T ss_dssp CSGGGHHHHHHHHTTTSEEEETTTEEEECTTHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCcEEEEcCCccEEccCcHHHHHHHH
Confidence 4578999999999999999999889999998876665543
No 102
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=95.13 E-value=0.049 Score=34.90 Aligned_cols=64 Identities=9% Similarity=0.082 Sum_probs=49.0
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCC---eeeCcchHhhHHHHH
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGG---RRITSSGQRDLDQVA 83 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~lD~iA 83 (90)
.|+..|. ++|..++.|....|-. .+-+.+-|+.||+.|||+....+. -.||+.|...+....
T Consensus 22 ~Il~~L~-~~~~~~~eLa~~l~is--------------~~tvs~hL~~L~~~GlV~~~~~gr~~~y~l~~~~~~~l~~~~ 86 (118)
T 3f6o_A 22 AVLGRLS-RGPATVSELAKPFDMA--------------LPSFMKHIHFLEDSGWIRTHKQGRVRTCAIEKEPFTAVEAWL 86 (118)
T ss_dssp HHHHHHH-TCCEEHHHHHTTCCSC--------------HHHHHHHHHHHHHTTSEEEEEETTEEEEEECSHHHHHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHhCcC--------------HHHHHHHHHHHHHCCCeEEEecCCEEEEEECHHHHHHHHHHH
Confidence 4667776 7999999999977653 367889999999999998766422 468999988776554
Q ss_pred HH
Q 034587 84 GR 85 (90)
Q Consensus 84 ~~ 85 (90)
..
T Consensus 87 ~~ 88 (118)
T 3f6o_A 87 AE 88 (118)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 103
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=95.12 E-value=0.017 Score=40.41 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=49.9
Q ss_pred hHHHHHHHHhhcC------CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHh
Q 034587 4 LVTSMARKIYLRQ------GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQR 77 (90)
Q Consensus 4 r~ASi~RklYl~g------~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~ 77 (90)
.++.-+|.-=+.| .+....|+..||- |...+|.+|+.||..|||+..+..|-.+++-...
T Consensus 16 ~v~~~l~~~I~~g~l~pG~~L~e~~La~~lgV--------------SRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~ 81 (218)
T 3sxy_A 16 KVYNLLKEMILNHELKLGEKLNVRELSEKLGI--------------SFTPVRDALLQLATEGLVKVVPRVGFFVTDVDEK 81 (218)
T ss_dssp HHHHHHHHHHHTTSSCTTCEECHHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEEEETTTEEEECCCCHH
T ss_pred HHHHHHHHHHHhCCCCCCCEeCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEeCCCceEEcCCCHH
Confidence 3444445444444 2457789999987 4589999999999999999999889999987777
Q ss_pred hHHHHH
Q 034587 78 DLDQVA 83 (90)
Q Consensus 78 ~lD~iA 83 (90)
++..+-
T Consensus 82 ~~~el~ 87 (218)
T 3sxy_A 82 FIRETI 87 (218)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 766543
No 104
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=95.08 E-value=0.1 Score=33.67 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=44.8
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCe----eeCcchHhhHHH
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR----RITSSGQRDLDQ 81 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR----~lT~~G~~~lD~ 81 (90)
.|+..|.-.++..+..|....|-. .+-+.+.|+.||+.|||+...+ || .||+.+-..+-.
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~is--------------~stvs~~L~~L~~~Glv~~~~~-gr~~~y~l~~~~~~~~~~ 109 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILGVT--------------IANASHHLRTLYKQGVVNFRKE-GKLALYSLGDEHIRQIMM 109 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEC-----CCEEEESCHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCeEEEEE-CCEEEEEECHHHHHHHHH
Confidence 467777667999999999988753 3688899999999999987754 44 788887655433
No 105
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=95.01 E-value=0.029 Score=38.12 Aligned_cols=72 Identities=11% Similarity=0.017 Sum_probs=45.2
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC---CCe-----eeCcchHhh
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK---GGR-----RITSSGQRD 78 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~---~GR-----~lT~~G~~~ 78 (90)
.||.-|+ .+|.--..|.+.....-. .+..-+-+.+-.+|+.||+.|||+.... +|+ .||++|++.
T Consensus 45 ~IL~~L~-~~~~~gyeI~~~l~~~~~------~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~~G~~~ 117 (145)
T 1xma_A 45 IILSLLI-EGDSYGYEISKNIRIKTD------ELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITPEGIKY 117 (145)
T ss_dssp HHHHHHH-HCCEEHHHHHHHHHHHHT------TSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECHHHHHH
T ss_pred HHHHHHH-hCCCCHHHHHHHHHHhhC------CccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECHHHHHH
Confidence 4555554 356544444444432100 1123556789999999999999986531 232 799999999
Q ss_pred HHHHHHH
Q 034587 79 LDQVAGR 85 (90)
Q Consensus 79 lD~iA~~ 85 (90)
+......
T Consensus 118 l~~~~~~ 124 (145)
T 1xma_A 118 YKQKCEE 124 (145)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9876554
No 106
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=95.00 E-value=0.14 Score=33.69 Aligned_cols=42 Identities=17% Similarity=0.112 Sum_probs=36.8
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcc
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 74 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~ 74 (90)
.+..|+..||-. ..-+|.+|+.|+..|||+..+..|-.+++.
T Consensus 37 se~~La~~~~vS--------------r~tvr~Al~~L~~~Gli~~~~g~G~~V~~~ 78 (126)
T 3by6_A 37 SVRETALQEKIN--------------PNTVAKAYKELEAQKVIRTIPGKGTFITGN 78 (126)
T ss_dssp CHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEETTTEEEECSC
T ss_pred CHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEecCCeEEEccC
Confidence 788899988863 478999999999999999998889999883
No 107
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=94.98 E-value=0.024 Score=40.54 Aligned_cols=51 Identities=16% Similarity=0.144 Sum_probs=43.4
Q ss_pred CchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHH
Q 034587 18 LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQV 82 (90)
Q Consensus 18 vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~i 82 (90)
+....|+..||- |..-+|.+|+.||..|||+..+..|-.+++-...++..+
T Consensus 52 L~e~~La~~lgV--------------SRtpVREAL~~L~~eGlv~~~~~~G~~V~~~~~~~~~el 102 (239)
T 2hs5_A 52 LSEPDICAALDV--------------SRNTVREAFQILIEDRLVAHELNRGVFVRVPTAEDITEL 102 (239)
T ss_dssp ECHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECCCCHHHHHHH
T ss_pred eCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEeCCCeeEEeCCCHHHHHHH
Confidence 567788888887 457999999999999999999988999998877776654
No 108
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=94.97 E-value=0.044 Score=35.40 Aligned_cols=44 Identities=14% Similarity=0.225 Sum_probs=34.8
Q ss_pred CchhHHHHHHHHHHhCCcccccCCCC---eeeCcchHhhHHHHHHHh
Q 034587 43 SSGAIARHILQQLQNMNIIDIEPKGG---RRITSSGQRDLDQVAGRI 86 (90)
Q Consensus 43 asg~iiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~lD~iA~~v 86 (90)
-+-+.+=-+|+.||+.|||+...+.. -.||++|+..+++...+.
T Consensus 42 is~GtlYp~L~rLe~~GlI~~~~~~~rk~Y~iT~~Gr~~l~~~~~~~ 88 (99)
T 2co5_A 42 ISDGVLYPLIDSLIDDKILREEEAPDGKVLFLTEKGMKEFEELHEFF 88 (99)
T ss_dssp CCHHHHHHHHHHHHHTTSEEEECCTTSCEEEECHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHCCCEEEeeCCCcEEEEECHHHHHHHHHHHHhH
Confidence 34567888999999999998765222 479999999999877654
No 109
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=94.96 E-value=0.035 Score=36.43 Aligned_cols=69 Identities=23% Similarity=0.240 Sum_probs=45.9
Q ss_pred HHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC---CCC-----eeeCcchHhhH
Q 034587 8 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP---KGG-----RRITSSGQRDL 79 (90)
Q Consensus 8 i~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~---~~G-----R~lT~~G~~~l 79 (90)
||--|. .+|.---.|.+.... . .+..-+-+.+-.+|+.||+.|||+... .+| -.||++|+..|
T Consensus 18 IL~lL~-~~p~~Gyei~~~l~~---~-----g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~~G~~~l 88 (116)
T 3hhh_A 18 VLAIIQ-RKETYGYEITKILND---Q-----GFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTSSGEAEL 88 (116)
T ss_dssp HHHHHH-HSCBCHHHHHHHHHT---T-----SCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECHHHHHHH
T ss_pred HHHHHh-cCCCCHHHHHHHHHH---c-----CCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHH
Confidence 444444 455544456665544 1 244556788999999999999998543 234 35999999999
Q ss_pred HHHHHH
Q 034587 80 DQVAGR 85 (90)
Q Consensus 80 D~iA~~ 85 (90)
+.....
T Consensus 89 ~~~~~~ 94 (116)
T 3hhh_A 89 ADFWQR 94 (116)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 886554
No 110
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=94.79 E-value=0.044 Score=35.94 Aligned_cols=44 Identities=18% Similarity=0.357 Sum_probs=33.7
Q ss_pred cCchhHHHHHHHHHHhCCcccccC---CCC-----eeeCcchHhhHHHHHHH
Q 034587 42 KSSGAIARHILQQLQNMNIIDIEP---KGG-----RRITSSGQRDLDQVAGR 85 (90)
Q Consensus 42 ~asg~iiR~~LqqLE~~glV~k~~---~~G-----R~lT~~G~~~lD~iA~~ 85 (90)
.-+-+.+-.+|+.||+.|||+... .+| -.||++|+..|+.....
T Consensus 41 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~~G~~~l~~~~~~ 92 (117)
T 4esf_A 41 EVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNEAGRQELELFWKK 92 (117)
T ss_dssp TCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECHHHHHHHHHHHHH
T ss_pred CCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECHHHHHHHHHHHHH
Confidence 456688999999999999998653 233 35999999999886554
No 111
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=94.77 E-value=0.17 Score=36.18 Aligned_cols=60 Identities=8% Similarity=-0.061 Sum_probs=49.5
Q ss_pred hhHHHHHHHHhhcC-CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchH
Q 034587 3 ELVTSMARKIYLRQ-GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQ 76 (90)
Q Consensus 3 ~r~ASi~RklYl~g-~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~ 76 (90)
.|+-.||..|.-.+ ++++..|....|-.+ +-+..+|+.||+.|||+.+.++...|+++..
T Consensus 8 ~r~l~iL~~l~~~~~~~~~~ela~~~gl~~--------------stv~r~l~~L~~~G~v~~~~~~~Y~lg~~~~ 68 (249)
T 1mkm_A 8 KKAFEILDFIVKNPGDVSVSEIAEKFNMSV--------------SNAYKYMVVLEEKGFVLRKKDKRYVPGYKLI 68 (249)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHTTCCH--------------HHHHHHHHHHHHTTSEEECTTSCEEECTHHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCcEEECCCCcEEECHHHH
Confidence 57888998887765 799999999887744 6788999999999999988556678988654
No 112
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=94.69 E-value=0.035 Score=39.81 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=43.9
Q ss_pred CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHH
Q 034587 17 GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQV 82 (90)
Q Consensus 17 ~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~i 82 (90)
.+....|+..||- |..-+|.+|+.||..|||+..+.+|-.+++....++..+
T Consensus 49 ~L~e~~La~~lgV--------------Sr~~VReAL~~L~~~Glv~~~~~~G~~V~~~~~~~~~~~ 100 (237)
T 3c7j_A 49 ALRQQELATLFGV--------------SRMPVREALRQLEAQSLLRVETHKGAVVAPLITEDAVDA 100 (237)
T ss_dssp BCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECCCHHHHHHHH
T ss_pred eeCHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEeCCCceEEecCCHHHHHHH
Confidence 4678899999987 457999999999999999999888999998877665543
No 113
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=94.67 E-value=0.06 Score=32.37 Aligned_cols=45 Identities=13% Similarity=0.141 Sum_probs=37.2
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~ 65 (90)
.|+.-|.-.+++.+..|+..+|-. .+-++..|+.||+.|+|+..+
T Consensus 4 ~Il~~L~~~~~~s~~eLa~~lgvs--------------~~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 4 EILEFLNRHNGGKTAEIAEALAVT--------------DYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTSC--------------HHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEec
Confidence 466667767899999999999863 367999999999999998543
No 114
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=94.65 E-value=0.21 Score=30.00 Aligned_cols=46 Identities=11% Similarity=0.149 Sum_probs=37.1
Q ss_pred HHHHHHHhh-cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC
Q 034587 6 TSMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 6 ASi~RklYl-~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~ 65 (90)
..++..++- .+++.+..|+..+|-. .+-+...|+.||+.|||+..+
T Consensus 24 ~~~l~~l~~~~~~~t~~ela~~l~is--------------~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 24 VAVLLKMVEIEKPITSEELADIFKLS--------------KTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCeEeec
Confidence 345666665 7899999999998753 368999999999999998654
No 115
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=94.62 E-value=0.052 Score=35.38 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=35.6
Q ss_pred ccCchhHHHHHHHHHHhCCcccccC----CCC-----eeeCcchHhhHHHHHHHh
Q 034587 41 CKSSGAIARHILQQLQNMNIIDIEP----KGG-----RRITSSGQRDLDQVAGRI 86 (90)
Q Consensus 41 ~~asg~iiR~~LqqLE~~glV~k~~----~~G-----R~lT~~G~~~lD~iA~~v 86 (90)
..-+-+.+-.+|+.||+.|||+... .+| -.||++|++.++....+.
T Consensus 52 ~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~~G~~~l~~~~~~~ 106 (115)
T 2dql_A 52 YRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSPEWQHQAEDLARLW 106 (115)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECGGGHHHHHHHHHHH
T ss_pred CCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence 3556688999999999999998542 124 479999999998876543
No 116
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=94.60 E-value=0.15 Score=33.72 Aligned_cols=47 Identities=15% Similarity=0.060 Sum_probs=39.8
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhH
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDL 79 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~l 79 (90)
....|+..||- |...+|.+|+.||..|||+..+..|-.+++....++
T Consensus 30 se~~La~~~gv--------------Sr~tVr~Al~~L~~~Gli~~~~g~G~~V~~~~~~~~ 76 (129)
T 2ek5_A 30 STNELAAFHRI--------------NPATARNGLTLLVEAGILYKKRGIGMFVSAQAPALI 76 (129)
T ss_dssp CHHHHHHHTTC--------------CHHHHHHHHHHHHTTTSEEEETTTEEEECTTHHHHH
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEecCCEEEEecCchHhh
Confidence 67788888886 347999999999999999999888999998765554
No 117
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=94.57 E-value=0.063 Score=35.16 Aligned_cols=43 Identities=16% Similarity=0.085 Sum_probs=37.3
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcch
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSG 75 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G 75 (90)
.+..|+..||- |...+|.+|+.|++.|||+..+..|-.+++.-
T Consensus 39 s~~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~~ 81 (125)
T 3neu_A 39 SVREMGVKLAV--------------NPNTVSRAYQELERAGYIYAKRGMGSFVTSDK 81 (125)
T ss_dssp CHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECCCH
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCeEEEecCCEEEEecCc
Confidence 58889998886 34799999999999999999988898998854
No 118
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=94.50 E-value=0.071 Score=39.03 Aligned_cols=67 Identities=10% Similarity=0.075 Sum_probs=49.4
Q ss_pred HHHHHHHhhcC--CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCe----eeCcchHh
Q 034587 6 TSMARKIYLRQ--GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGR----RITSSGQR 77 (90)
Q Consensus 6 ASi~RklYl~g--~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR----~lT~~G~~ 77 (90)
..||..|+-.+ ++.++.|+...+-. .+-+=.+++.||+.|||+..+ ++.| .||++|+.
T Consensus 161 ~~vL~~L~~~~~~~~t~~eLa~~l~i~--------------~~tvt~~v~rLe~~GlV~R~~~~~DrR~~~i~LT~~G~~ 226 (250)
T 1p4x_A 161 FTILAIITSQNKNIVLLKDLIETIHHK--------------YPQTVRALNNLKKQGYLIKERSTEDERKILIHMDDAQQD 226 (250)
T ss_dssp HHHHHHHHTTTTCCEEHHHHHHHSSSC--------------HHHHHHHHHHHHHHTSSEEEECSSSTTCEEEECCHHHHH
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCCC--------------hhhHHHHHHHHHHCCCEEeeCCCCCCCeEEEEECHHHHH
Confidence 35677777765 47888888866543 245667899999999998654 4555 38999999
Q ss_pred hHHHHHHHh
Q 034587 78 DLDQVAGRI 86 (90)
Q Consensus 78 ~lD~iA~~v 86 (90)
.++++...+
T Consensus 227 ~~~~~~~~~ 235 (250)
T 1p4x_A 227 HAEQLLAQV 235 (250)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999886654
No 119
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=94.49 E-value=0.026 Score=36.53 Aligned_cols=72 Identities=13% Similarity=0.029 Sum_probs=47.7
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCch-hHHHHHHHHHHhCCcccccCC--CC-----eeeCcchHhh
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSG-AIARHILQQLQNMNIIDIEPK--GG-----RRITSSGQRD 78 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg-~iiR~~LqqLE~~glV~k~~~--~G-----R~lT~~G~~~ 78 (90)
.||.-|.- +|.-...|.+.... .|.-. ..-+- +.+-.+|+.||+.|||+.... .| -.||++|+..
T Consensus 17 ~IL~~L~~-~~~~gyel~~~l~~---~g~~~---~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~~G~~~ 89 (118)
T 2esh_A 17 TILLLVAE-KPSHGYELAERLAE---FGIEI---PGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITPQGKLY 89 (118)
T ss_dssp HHHHHHHH-SCBCHHHHHHHHHT---TCCSS---TTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECHHHHHH
T ss_pred HHHHHHHc-CCCCHHHHHHHHHH---hCCcc---cCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEEChHHHHH
Confidence 45666643 67766677777653 22110 12344 578889999999999985531 23 2799999999
Q ss_pred HHHHHHH
Q 034587 79 LDQVAGR 85 (90)
Q Consensus 79 lD~iA~~ 85 (90)
+......
T Consensus 90 l~~~~~~ 96 (118)
T 2esh_A 90 LREILRS 96 (118)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9886554
No 120
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=94.23 E-value=0.035 Score=39.94 Aligned_cols=65 Identities=18% Similarity=0.196 Sum_probs=46.9
Q ss_pred cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC---CCC-----eeeCcchHhhHHHHHHH
Q 034587 15 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP---KGG-----RRITSSGQRDLDQVAGR 85 (90)
Q Consensus 15 ~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~---~~G-----R~lT~~G~~~lD~iA~~ 85 (90)
.+|.---.|.+.+...- .++...+-+-|-.+|+.||+.|||+... .+| ..||++|+..|.+...+
T Consensus 47 ~~p~~GYeL~~~l~~~~------~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~~Gr~~l~~~l~~ 119 (204)
T 3l9f_A 47 KKERSGYEINDILQNQL------SYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITESGKKELASYLQS 119 (204)
T ss_dssp SCCEEHHHHHHHHHHTS------TTTEECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECHHHHHHHHHHHHS
T ss_pred cCCCCHHHHHHHHHHHh------CCccCCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEEChHHHHHHHHHHhc
Confidence 56666666777765431 2455667788999999999999998543 233 36999999999876654
No 121
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=94.23 E-value=0.16 Score=31.92 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=42.6
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCe
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR 69 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR 69 (90)
..|+.-|+-.+|+.+..|....+-. ++. +.+-+-.+|+.||+.|||+..+++.+
T Consensus 13 ~~vL~~L~~~~~~t~~el~~~l~~~--~~~--------~~~Tvt~~l~rLe~kGlv~R~~~~r~ 66 (126)
T 1sd4_A 13 WDVMNIIWDKKSVSANEIVVEIQKY--KEV--------SDKTIRTLITRLYKKEIIKRYKSENI 66 (126)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHTT--SCC--------CHHHHHHHHHHHHHTTSEEEEEETTE
T ss_pred HHHHHHHHhcCCCCHHHHHHHHhhc--CCC--------ChhhHHHHHHHHHHCCceEEEeCCCe
Confidence 4688999999999999999998753 222 23678899999999999997775333
No 122
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=94.16 E-value=0.082 Score=37.85 Aligned_cols=59 Identities=17% Similarity=0.312 Sum_probs=48.7
Q ss_pred hhHHHHHHHHhhcC-CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC-CCeeeCcch
Q 034587 3 ELVTSMARKIYLRQ-GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK-GGRRITSSG 75 (90)
Q Consensus 3 ~r~ASi~RklYl~g-~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~-~GR~lT~~G 75 (90)
.|+-.||..|.-.+ ++++..|....|-.| +-+..+|+.||+.|||+.+++ +...|+++.
T Consensus 6 ~r~l~iL~~l~~~~~~~s~~ela~~~gl~~--------------stv~r~l~~L~~~G~v~~~~~~~~Y~lg~~~ 66 (241)
T 2xrn_A 6 ARAASIMRALGSHPHGLSLAAIAQLVGLPR--------------STVQRIINALEEEFLVEALGPAGGFRLGPAL 66 (241)
T ss_dssp HHHHHHHHHHHTCTTCEEHHHHHHHTTSCH--------------HHHHHHHHHHHTTTSEEECGGGCEEEECSHH
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEEeCCCCeEEECHHH
Confidence 57888999887664 799999999887754 689999999999999998875 556787764
No 123
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=94.16 E-value=0.058 Score=33.72 Aligned_cols=43 Identities=14% Similarity=0.228 Sum_probs=36.2
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcch
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSG 75 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G 75 (90)
.+..|+..||-. ...+|.+|+.||+.|+|+..+..|..+++..
T Consensus 37 s~~eLa~~~~vS--------------r~tvr~al~~L~~~Gli~~~~g~G~~v~~~~ 79 (102)
T 1v4r_A 37 SVADIRAQFGVA--------------AKTVSRALAVLKSEGLVSSRGALGTVVEKNP 79 (102)
T ss_dssp CHHHHHHHSSSC--------------TTHHHHHTTTTTTSSCCEEETTTEEESCSCC
T ss_pred CHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEeCCCeEEEccCC
Confidence 788999988863 3689999999999999998887788877654
No 124
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=94.09 E-value=0.11 Score=32.25 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=41.2
Q ss_pred hHHHHHHHHhhc------CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeee
Q 034587 4 LVTSMARKIYLR------QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRI 71 (90)
Q Consensus 4 r~ASi~RklYl~------g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~l 71 (90)
|...|+--|--. +|+.|..++..+|=+ -.-||.-|..||+.|+|+.++ +||.+
T Consensus 5 r~~~IL~~I~~~i~~~~g~~psv~EIa~~lgvS--------------~~TVrr~L~~Le~kG~I~R~~-ggr~~ 63 (77)
T 2jt1_A 5 IVTKIISIVQERQNMDDGAPVKTRDIADAAGLS--------------IYQVRLYLEQLHDVGVLEKVN-AGKGV 63 (77)
T ss_dssp HHHHHHHHHHHHHHHHTTSCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEES-CSSSS
T ss_pred HHHHHHHHHHHHHhhccCCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCcEEecC-CCCCc
Confidence 344556555555 899999999988752 356999999999999999987 56655
No 125
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=93.90 E-value=0.11 Score=33.31 Aligned_cols=56 Identities=13% Similarity=0.091 Sum_probs=43.4
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCe----eeCcchHh
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR----RITSSGQR 77 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR----~lT~~G~~ 77 (90)
-.|++.|. .++..+..|+...|-. .+-+.+.|+.||+.|||+...+ || .||+.+-.
T Consensus 24 ~~IL~~L~-~~~~~~~eLa~~lgis--------------~stvs~~L~~L~~~GlV~~~~~-gr~~~y~l~~~~~~ 83 (118)
T 2jsc_A 24 CRILVALL-DGVCYPGQLAAHLGLT--------------RSNVSNHLSCLRGCGLVVATYE-GRQVRYALADSHLA 83 (118)
T ss_dssp HHHHHHHH-TTCCSTTTHHHHHSSC--------------HHHHHHHHHHHTTTTSEEEEEC-SSSEEEEESSHHHH
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCceEEEEE-CCEEEEEEChHHHH
Confidence 35777666 7889999999988753 3689999999999999987654 44 67887643
No 126
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=93.75 E-value=0.047 Score=35.96 Aligned_cols=42 Identities=17% Similarity=0.196 Sum_probs=35.3
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcc
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 74 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~ 74 (90)
.+..|+..||- |..-+|.+|++||..|||+..+..|-.+++.
T Consensus 40 ser~La~~~gV--------------Sr~tVReAl~~L~~eGlv~~~~g~G~~V~~~ 81 (134)
T 4ham_A 40 SIREFASRIGV--------------NPNTVSKAYQELERQEVIITVKGKGTFIANQ 81 (134)
T ss_dssp CHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred cHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEEEcCcEEEEeCC
Confidence 56778888886 4479999999999999999988778777654
No 127
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=93.60 E-value=0.16 Score=33.03 Aligned_cols=53 Identities=23% Similarity=0.418 Sum_probs=40.2
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCe----eeCcch
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR----RITSSG 75 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR----~lT~~G 75 (90)
.|+..|+ +++..+..|+...|-. .+-+.+.|+.||+.|||....+ || .+|+++
T Consensus 50 ~IL~~L~-~~~~s~~ela~~lgis--------------~stvs~~L~~Le~~Glv~~~~~-gr~~~y~l~~~~ 106 (122)
T 1r1t_A 50 RLLSLLA-RSELCVGDLAQAIGVS--------------ESAVSHQLRSLRNLRLVSYRKQ-GRHVYYQLQDHH 106 (122)
T ss_dssp HHHHHHT-TCCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEEE-TTEEEEEESSHH
T ss_pred HHHHHHH-cCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCeEEEEe-CCEEEEEEChHH
Confidence 4666665 6889999999988753 3688999999999999987654 43 356554
No 128
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=93.56 E-value=0.12 Score=37.83 Aligned_cols=58 Identities=14% Similarity=0.204 Sum_probs=48.1
Q ss_pred hhHHHHHHHHhhc-CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcc
Q 034587 3 ELVTSMARKIYLR-QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 74 (90)
Q Consensus 3 ~r~ASi~RklYl~-g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~ 74 (90)
.|+-.||.-|--. +++++..|+..-|-.| +-+..+|+.|++.|||++++++...|+++
T Consensus 30 ~Ral~IL~~l~~~~~~ltl~eia~~lgl~k--------------sTv~RlL~tL~~~G~v~~~~~~~Y~LG~~ 88 (275)
T 3mq0_A 30 RRAVRILDLVAGSPRDLTAAELTRFLDLPK--------------SSAHGLLAVMTELDLLARSADGTLRIGPH 88 (275)
T ss_dssp HHHHHHHHHHHHCSSCEEHHHHHHHHTCC----------------CHHHHHHHHHHTTSEEECTTSEEEECTH
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEECCCCcEEehHH
Confidence 5788899988875 4799999999998765 56889999999999999998666788876
No 129
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=93.43 E-value=0.067 Score=36.86 Aligned_cols=44 Identities=18% Similarity=0.166 Sum_probs=34.4
Q ss_pred cCchhHHHHHHHHHHhCCcccccCC----CC-----eeeCcchHhhHHHHHHH
Q 034587 42 KSSGAIARHILQQLQNMNIIDIEPK----GG-----RRITSSGQRDLDQVAGR 85 (90)
Q Consensus 42 ~asg~iiR~~LqqLE~~glV~k~~~----~G-----R~lT~~G~~~lD~iA~~ 85 (90)
.-+-+.+-.+|+.||+.|||+.... +| -.||++|++.++.....
T Consensus 75 ~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~ 127 (148)
T 2zfw_A 75 RLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQL 127 (148)
T ss_dssp ECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESSSSCSTTHHHHHH
T ss_pred CCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECHHHHHHHHHHHHH
Confidence 4556789999999999999986431 24 47999999988877654
No 130
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=93.41 E-value=0.076 Score=36.00 Aligned_cols=46 Identities=15% Similarity=0.107 Sum_probs=35.7
Q ss_pred ccCchhHHHHHHHHHHhCCcccccC--C--CC-----eeeCcchHhhHHHHHHHh
Q 034587 41 CKSSGAIARHILQQLQNMNIIDIEP--K--GG-----RRITSSGQRDLDQVAGRI 86 (90)
Q Consensus 41 ~~asg~iiR~~LqqLE~~glV~k~~--~--~G-----R~lT~~G~~~lD~iA~~v 86 (90)
..-+-+.+-.+|+.||+.|||+... . +| -.||++|++.++....+.
T Consensus 64 ~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~~Gr~~l~~~~~~~ 118 (138)
T 2e1n_A 64 YRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQANDDRSRDLAQLW 118 (138)
T ss_dssp EECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESCSCCHHHHHHHHHH
T ss_pred CCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECHHHHHHHHHHHHHH
Confidence 3556688999999999999998542 1 24 479999999988876543
No 131
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=93.33 E-value=0.045 Score=38.66 Aligned_cols=44 Identities=20% Similarity=0.253 Sum_probs=36.9
Q ss_pred hhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccc--cCC--CCeeeCcchHh
Q 034587 20 VGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI--EPK--GGRRITSSGQR 77 (90)
Q Consensus 20 V~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k--~~~--~GR~lT~~G~~ 77 (90)
-..|+..||- |...+|.+|+.||..|||+. .+. +|-.+++....
T Consensus 31 E~~La~~lgV--------------SRtpVREAL~~L~~~GlV~~~~~~~~~~G~~V~~~~~~ 78 (239)
T 2di3_A 31 ERALSETLGV--------------SRSSLREALRVLEALGTISTATGSGPRSGTIITAAPGQ 78 (239)
T ss_dssp HHHHHHHHTC--------------CHHHHHHHHHHHHHHTSEECCSTTSGGGCCEECCCCCS
T ss_pred HHHHHHHHCC--------------CHHHHHHHHHHHHHCCCeEeecccCCCCCceeeCCcch
Confidence 4589999986 45799999999999999999 887 78888876553
No 132
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=93.23 E-value=0.054 Score=35.47 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhCCcccccC---CCC-----eeeCcchHhhHHHHH
Q 034587 46 AIARHILQQLQNMNIIDIEP---KGG-----RRITSSGQRDLDQVA 83 (90)
Q Consensus 46 ~iiR~~LqqLE~~glV~k~~---~~G-----R~lT~~G~~~lD~iA 83 (90)
+.+-.+|+.||+.|||+... .+| -.||++|+..|++..
T Consensus 48 gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT~~G~~~l~~~~ 93 (117)
T 3elk_A 48 GSIYILLKTMKERGFVISESSVNEKGQQLTVYHITDAGKKFLCDHS 93 (117)
T ss_dssp THHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEECHHHHHHHHHTS
T ss_pred chHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECHHHHHHHHHHH
Confidence 68899999999999998543 123 359999999998753
No 133
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=93.14 E-value=0.25 Score=33.03 Aligned_cols=57 Identities=9% Similarity=0.104 Sum_probs=42.4
Q ss_pred HHHHHHHhhc--CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC-CCCeeeCcchH
Q 034587 6 TSMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP-KGGRRITSSGQ 76 (90)
Q Consensus 6 ASi~RklYl~--g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~-~~GR~lT~~G~ 76 (90)
-.++-.|..+ +++.+..++..++-. -..++++|++|+++|||+... .||..|+....
T Consensus 17 l~~L~~La~~~~~~~~~~~iA~~~~i~--------------~~~l~kil~~L~~~Glv~s~rG~GGy~L~~~p~ 76 (149)
T 1ylf_A 17 VHILSILKNNPSSLCTSDYMAESVNTN--------------PVVIRKIMSYLKQAGFVYVNRGPGGAGLLKDLH 76 (149)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEEEC---CCEEESSCGG
T ss_pred HHHHHHHHhCCCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCcEEEccCCCceEeCCChh
Confidence 3455555553 478899999988874 379999999999999998654 57888887643
No 134
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=93.10 E-value=0.38 Score=30.91 Aligned_cols=70 Identities=17% Similarity=0.135 Sum_probs=51.9
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc-----C-CCCeeeCc-----
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE-----P-KGGRRITS----- 73 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~-----~-~~GR~lT~----- 73 (90)
--.|++.|.-++++....|+..+|- |.+-++..|+.||+.|+|+.. + +-|..+|.
T Consensus 6 ~~~il~~L~~~~~~~~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~~~v~~~ 71 (141)
T 1i1g_A 6 DKIILEILEKDARTPFTEIAKKLGI--------------SETAVRKRVKALEEKGIIEGYTIKINPKKLGYSLVTITGVD 71 (141)
T ss_dssp HHHHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHHTSSCCCCCCCCSGGGTCCEEEEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEeccccccChHHhCccEEEEEEEE
Confidence 3467887777889999999999875 347899999999999999742 2 23666655
Q ss_pred -chHhhHHHHHHHhhcC
Q 034587 74 -SGQRDLDQVAGRIVVA 89 (90)
Q Consensus 74 -~G~~~lD~iA~~v~~~ 89 (90)
.+ ..++.++..+..-
T Consensus 72 ~~~-~~~~~~~~~l~~~ 87 (141)
T 1i1g_A 72 TKP-EKLFEVAEKLKEY 87 (141)
T ss_dssp ECG-GGHHHHHHHHHHS
T ss_pred ECc-hhHHHHHHHHhcC
Confidence 44 4678888777543
No 135
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=93.09 E-value=0.3 Score=35.25 Aligned_cols=60 Identities=5% Similarity=-0.007 Sum_probs=48.2
Q ss_pred hhHHHHHHHHhh-cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchH
Q 034587 3 ELVTSMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQ 76 (90)
Q Consensus 3 ~r~ASi~RklYl-~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~ 76 (90)
.|+-.||.-|.- .+++++..|....|-.| +-+..+|+.||+.|||+.++++...|+++.-
T Consensus 23 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~k--------------stv~r~l~tL~~~G~v~~~~~~~Y~lg~~~~ 83 (260)
T 2o0y_A 23 TRVIDLLELFDAAHPTRSLKELVEGTKLPK--------------TTVVRLVATMCARSVLTSRADGSYSLGPEML 83 (260)
T ss_dssp HHHHHHHTTCBTTBSSBCHHHHHHHHCCCH--------------HHHHHHHHHHHHTTSEEECTTSCEEECHHHH
T ss_pred HHHHHHHHHHhhCCCCcCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEECCCCeEEecHHHH
Confidence 467778877653 57899999999988754 6888999999999999998765667877643
No 136
>3aaf_A Werner syndrome ATP-dependent helicase; helix-turn-helix, winged-helix, protein-DNA complex, DNA-BIN helicase; HET: DNA; 1.90A {Homo sapiens} PDB: 2axl_A
Probab=93.09 E-value=0.62 Score=31.27 Aligned_cols=80 Identities=13% Similarity=0.070 Sum_probs=58.3
Q ss_pred hHHHHHHHHh-hcCCCchhHHHHHhcCCCCCCCCCCcccc---C-----chhHHHHHHHHHHhCCcccccCCC----C-e
Q 034587 4 LVTSMARKIY-LRQGLGVGSFRRIYGGSKRNGSRPPHFCK---S-----SGAIARHILQQLQNMNIIDIEPKG----G-R 69 (90)
Q Consensus 4 r~ASi~RklY-l~g~vGV~~Lr~~YGg~krrG~~P~h~~~---a-----sg~iiR~~LqqLE~~glV~k~~~~----G-R 69 (90)
-|-.+|.-|| +.+..|++.+..+.-|+++.-+.-.|... | +-.-++.++.||...|+++.+... + =
T Consensus 17 ~AqkiLs~V~r~~~rfG~~~iidvLrGs~~~ki~~~~~~l~tfGigk~~s~~~w~~lirqLi~~G~L~~~~~~~~~~~~L 96 (134)
T 3aaf_A 17 QAFKLLSAVDILGEKFGIGLPILFLRGSNSQRLADQYRRHSLFGTGKDQTESWWKAFSRQLITEGFLVEVSRYNKFMKIC 96 (134)
T ss_dssp HHHHHHHHHHHTTTCSCTHHHHHHHTTCCCTTSCGGGGGSTTTTTTTTSCHHHHHHHHHHHHHTTSEEEEECSSTTCEEE
T ss_pred HHHHHHHHHHHHcCcccccchhhhhcCCcHHHHHHHhCCCCccCCCCCCCHHHHHHHHHHHHHcCCceeecCcCccCceE
Confidence 3444555555 36789999999999999887665522211 2 234799999999999999876533 2 6
Q ss_pred eeCcchHhhHHHHH
Q 034587 70 RITSSGQRDLDQVA 83 (90)
Q Consensus 70 ~lT~~G~~~lD~iA 83 (90)
.||++|+..|..--
T Consensus 97 ~Lt~~g~~vL~~~~ 110 (134)
T 3aaf_A 97 ALTKKGRNWLHKAN 110 (134)
T ss_dssp EECHHHHHHHHHHT
T ss_pred EECHHHHHHHhCCc
Confidence 89999999987643
No 137
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=92.90 E-value=0.15 Score=33.79 Aligned_cols=44 Identities=20% Similarity=0.297 Sum_probs=33.7
Q ss_pred cCchhHHHHHHHHHHhCCcccccC--CCC-----eeeCcchHhhHHHHHHH
Q 034587 42 KSSGAIARHILQQLQNMNIIDIEP--KGG-----RRITSSGQRDLDQVAGR 85 (90)
Q Consensus 42 ~asg~iiR~~LqqLE~~glV~k~~--~~G-----R~lT~~G~~~lD~iA~~ 85 (90)
.-+.+.+=.+|+.||+.|||+... .++ -.||++|+..++.....
T Consensus 49 ~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~~Gr~~l~~~~~~ 99 (123)
T 3ri2_A 49 PIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTDEGLRVLREVEAQ 99 (123)
T ss_dssp CCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECHHHHHHHHHHHHH
Confidence 445678888999999999998542 122 34999999999887655
No 138
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=92.85 E-value=0.12 Score=36.23 Aligned_cols=62 Identities=18% Similarity=0.164 Sum_probs=43.5
Q ss_pred HHHHHHhhc--CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC------CCCe-----eeCc
Q 034587 7 SMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP------KGGR-----RITS 73 (90)
Q Consensus 7 Si~RklYl~--g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~------~~GR-----~lT~ 73 (90)
+|+..|.-+ ++..+..|....+ .=|-.-|+.-|+.|++.|+|++.. ..|| .||+
T Consensus 33 ~IL~~Ll~~p~~~~ta~eL~~~l~-------------~lS~aTVyrhL~~L~eaGLV~~~~~~~~~~~rGrP~k~Y~LT~ 99 (151)
T 3u1d_A 33 DVLHQILAQPDGVLSVEELLYRNP-------------DETEANLRYHVDELVDRGIVEKIPVPRAKSVDDPPTTFYAVTG 99 (151)
T ss_dssp HHHHHHHHSTTSCBCHHHHHHHCT-------------TSCHHHHHHHHHHHHHTTSEEEEECCCCTTSSSCCCEEEEECH
T ss_pred HHHHHHHcCCCCCCCHHHHHHhcC-------------CCCHHHHHHHHHHHHHCCCeEEeecCcCcccCCCCceEEEECH
Confidence 345555444 2356777765432 135679999999999999998542 1254 8999
Q ss_pred chHhhHHH
Q 034587 74 SGQRDLDQ 81 (90)
Q Consensus 74 ~G~~~lD~ 81 (90)
+|+..++.
T Consensus 100 ~Gr~~l~~ 107 (151)
T 3u1d_A 100 EGIALLRA 107 (151)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 139
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=92.68 E-value=0.36 Score=30.28 Aligned_cols=60 Identities=12% Similarity=0.087 Sum_probs=44.2
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC-CCeeeCcchHhhHHH
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK-GGRRITSSGQRDLDQ 81 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~-~GR~lT~~G~~~lD~ 81 (90)
.|+..|+- ++..+..++...|-.+ +-+...|+.||+.|+|....+ ....+|..|...++.
T Consensus 36 ~il~~L~~-~~~s~~ela~~l~is~--------------stvsr~l~~Le~~Glv~~~~~~r~~~~~~~~~~~~~~ 96 (119)
T 2lkp_A 36 MILTQLRN-GPLPVTDLAEAIGMEQ--------------SAVSHQLRVLRNLGLVVGDRAGRSIVYSLYDTHVAQL 96 (119)
T ss_dssp HHHHHHHH-CCCCHHHHHHHHSSCH--------------HHHHHHHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred HHHHHHHH-CCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEEEecCCEEEEEEchHHHHHH
Confidence 46666664 7899999999887643 688999999999999987653 234577777655443
No 140
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=92.67 E-value=0.31 Score=34.33 Aligned_cols=66 Identities=20% Similarity=0.105 Sum_probs=47.5
Q ss_pred HHHHHHHhhcCC------CchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC---CCeeeCcchH
Q 034587 6 TSMARKIYLRQG------LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK---GGRRITSSGQ 76 (90)
Q Consensus 6 ASi~RklYl~g~------vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~---~GR~lT~~G~ 76 (90)
-.+++.|+..+. +.+..++...+-.+ +-+=..+++||+.|||+..++ .+=.||++|+
T Consensus 10 l~~l~~l~~~~~l~~~~~~s~s~aA~~L~isq--------------~avSr~I~~LE~~~L~~R~~~~R~~~v~LT~~G~ 75 (230)
T 3cta_A 10 YRAIKKIKEAAEASNRAYLTSSKLADMLGISQ--------------QSASRIIIDLEKNGYITRTVTKRGQILNITEKGL 75 (230)
T ss_dssp HHHHHHHHHHTTTSSEEECCHHHHHHHHTSCH--------------HHHHHHHHHHHHTTSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHHhcccccCCCcCHHHHHHHHCCCH--------------HHHHHHHHHHHHCCCEEEEEcCCeEEEEECHHHH
Confidence 345555555443 56888888776643 567778899999999997732 3557999999
Q ss_pred hhHHHHHHH
Q 034587 77 RDLDQVAGR 85 (90)
Q Consensus 77 ~~lD~iA~~ 85 (90)
..++.+...
T Consensus 76 ~l~~~~~~~ 84 (230)
T 3cta_A 76 DVLYTEFAD 84 (230)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876543
No 141
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=92.50 E-value=0.12 Score=37.43 Aligned_cols=58 Identities=16% Similarity=0.265 Sum_probs=48.6
Q ss_pred hhHHHHHHHHhh-cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC-CCeeeCcc
Q 034587 3 ELVTSMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK-GGRRITSS 74 (90)
Q Consensus 3 ~r~ASi~RklYl-~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~-~GR~lT~~ 74 (90)
.|+-.||.-|-- .+++++..|...-|-.| +-+..+|+.|++.|||+++++ +...|+++
T Consensus 6 ~Ral~IL~~l~~~~~~lsl~eia~~lgl~k--------------sT~~RlL~tL~~~G~v~~~~~~~~Y~lG~~ 65 (260)
T 3r4k_A 6 SKALTLLTYFNHGRLEIGLSDLTRLSGMNK--------------ATVYRLMSELQEAGFVEQVEGARSYRLGPQ 65 (260)
T ss_dssp HHHHHHHTTCBTTBSEEEHHHHHHHHCSCH--------------HHHHHHHHHHHHTTSEEECSSSSEEEECTT
T ss_pred HHHHHHHHHHhhCCCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEEcCCCCcEEcCHH
Confidence 578888888875 57899999999988754 788999999999999999886 55677765
No 142
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=92.35 E-value=0.23 Score=36.34 Aligned_cols=66 Identities=8% Similarity=0.062 Sum_probs=46.7
Q ss_pred HHHHHHhhc--CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc--CCCCee----eCcchHhh
Q 034587 7 SMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE--PKGGRR----ITSSGQRD 78 (90)
Q Consensus 7 Si~RklYl~--g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~--~~~GR~----lT~~G~~~ 78 (90)
.||..||-. +++.+..|....+-. ++.+- .+|+.||+.|||++. +++.|. ||++|+..
T Consensus 38 ~vL~~L~~~~~~~~~~~el~~~l~~~-------------~~t~t-~~l~rLe~~G~i~R~~~~~DrR~~~i~LT~~G~~~ 103 (250)
T 1p4x_A 38 ILLTYLFHQQENTLPFKKIVSDLCYK-------------QSDLV-QHIKVLVKHSYISKVRSKIDERNTYISISEEQREK 103 (250)
T ss_dssp HHHHHHHSCSCSEEEHHHHHHHSSSC-------------GGGTH-HHHHHHHHTTSCEEEECSSSTTSEEEECCHHHHHH
T ss_pred HHHHHHHhcCCCCcCHHHHHHHHCCC-------------HhhHH-HHHHHHHHCCCEEecCCCCCCCeEEEEECHHHHHH
Confidence 467777764 478888888755443 33343 689999999999854 444443 89999998
Q ss_pred HHHHHHHh
Q 034587 79 LDQVAGRI 86 (90)
Q Consensus 79 lD~iA~~v 86 (90)
++.+...+
T Consensus 104 ~~~~~~~~ 111 (250)
T 1p4x_A 104 IAERVTLF 111 (250)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88776554
No 143
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=92.20 E-value=0.28 Score=32.84 Aligned_cols=56 Identities=14% Similarity=0.202 Sum_probs=42.2
Q ss_pred HHHHHHhhc---CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCeeeCcchH
Q 034587 7 SMARKIYLR---QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRRITSSGQ 76 (90)
Q Consensus 7 Si~RklYl~---g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR~lT~~G~ 76 (90)
.++-.|..+ +++.+..++..+|-. -..++++|++|.++|||+... .||-.|+..-.
T Consensus 15 ~~L~~La~~~~~~~~s~~~IA~~~~i~--------------~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p~ 75 (143)
T 3t8r_A 15 TLMISLAKKEGQGCISLKSIAEENNLS--------------DLYLEQLVGPLRNAGLIRSVRGAKGGYQLRVPAE 75 (143)
T ss_dssp HHHHHHHTTTTSCCEEHHHHHHHTTCC--------------HHHHHHHHHHHHHTTSEEECSSSSSEEEESSCGG
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCEEEecCCCCCCeeecCCcc
Confidence 344455543 378999999988764 379999999999999998554 47888886554
No 144
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=92.16 E-value=0.082 Score=36.93 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=35.8
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcc
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 74 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~ 74 (90)
.-..|+..||- |..-+|.+|+.||..|||+..+..|-.+++.
T Consensus 33 sE~eLa~~~gV--------------SR~tVReAL~~L~~eGlv~~~~g~G~~V~~~ 74 (239)
T 1hw1_A 33 AERELSELIGV--------------TRTTLREVLQRLARDGWLTIQHGKPTKVNNF 74 (239)
T ss_dssp CHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEEETTEEEEECCH
T ss_pred CHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEEecCCCcEeeCc
Confidence 56788888886 4579999999999999999998778888763
No 145
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=91.91 E-value=0.58 Score=30.41 Aligned_cols=61 Identities=8% Similarity=0.041 Sum_probs=45.0
Q ss_pred HHHHHHHhh-cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCe-----eeCcchH
Q 034587 6 TSMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR-----RITSSGQ 76 (90)
Q Consensus 6 ASi~RklYl-~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR-----~lT~~G~ 76 (90)
..|+.-|+- .+|+.+..|....+.. ++. +-+-+-.+|+.||+.|||+..+++.+ .+|++|.
T Consensus 12 ~~vL~~L~~~~~~~t~~el~~~l~~~--~~~--------~~~Tvt~~l~rLe~kGlv~r~~~~r~~~~~~~lt~~~~ 78 (138)
T 2g9w_A 12 RAVMDHLWSRTEPQTVRQVHEALSAR--RDL--------AYTTVMAVLQRLAKKNLVLQIRDDRAHRYAPVHGRDEL 78 (138)
T ss_dssp HHHHHHHHTCSSCEEHHHHHHHHTTT--CCC--------CHHHHHHHHHHHHHTTSEEEEC---CCEEEESSCHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHhcc--CCC--------CHHHHHHHHHHHHHCCCEEEEecCCeEEEEeCCCHHHH
Confidence 468888988 5999999999999753 222 23578889999999999998775322 2577764
No 146
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=91.52 E-value=0.35 Score=34.75 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=47.2
Q ss_pred hhHHHHHHHHhh-cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcch
Q 034587 3 ELVTSMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSG 75 (90)
Q Consensus 3 ~r~ASi~RklYl-~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G 75 (90)
.|+-.||..|.- .+++++..|.+..|-.| +-+..+|+.|++.|||+.+. +...|+++.
T Consensus 14 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~~--------------stv~r~l~~L~~~G~v~~~~-~~Y~Lg~~~ 72 (257)
T 2g7u_A 14 ERGFAVLLAFDAQRPNPTLAELATEAGLSR--------------PAVRRILLTLQKLGYVAGSG-GRWSLTPRV 72 (257)
T ss_dssp HHHHHHHHTCSSSCSSCBHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSEEEET-TEEEECGGG
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEeCC-CEEEEcHHH
Confidence 467778887764 46899999999998754 67889999999999999874 567888875
No 147
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=91.50 E-value=0.38 Score=32.97 Aligned_cols=46 Identities=13% Similarity=0.158 Sum_probs=37.6
Q ss_pred CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCeeeCcch
Q 034587 16 QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRRITSSG 75 (90)
Q Consensus 16 g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR~lT~~G 75 (90)
+++.+..++..++-.. ..++++|++|.++|||+... .||-.|+..-
T Consensus 27 ~~~s~~~IA~~~~is~--------------~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 74 (162)
T 3k69_A 27 SKVASRELAQSLHLNP--------------VMIRNILSVLHKHGYLTGTVGKNGGYQLDLAL 74 (162)
T ss_dssp SCBCHHHHHHHHTSCG--------------GGTHHHHHHHHHTTSSEEECSTTCEEECCSCG
T ss_pred CCcCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEeecCCCCCeEecCCh
Confidence 4789999999888743 68999999999999998654 4678887554
No 148
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=91.43 E-value=0.71 Score=30.04 Aligned_cols=71 Identities=8% Similarity=0.075 Sum_probs=52.5
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc-----C-CCCee------eCc
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE-----P-KGGRR------ITS 73 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~-----~-~~GR~------lT~ 73 (90)
-.|++.|.-++++.+..|+...|-. .+-++..|+.||+.|+|+.. + +-|+. ++.
T Consensus 6 ~~il~~L~~~~~~~~~ela~~lg~s--------------~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~ 71 (150)
T 2pn6_A 6 LRILKILQYNAKYSLDEIAREIRIP--------------KATLSYRIKKLEKDGVIKGYYAYINPASLNLDYIVITSVKA 71 (150)
T ss_dssp HHHHHHHTTCTTSCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCcEEEEEeecCHHHhCCceEEEEEEEe
Confidence 4578877778899999999998763 46899999999999999852 2 22544 354
Q ss_pred ch-HhhHHHHHHHhhcCC
Q 034587 74 SG-QRDLDQVAGRIVVAP 90 (90)
Q Consensus 74 ~G-~~~lD~iA~~v~~~~ 90 (90)
.+ ...++.++..+.+-|
T Consensus 72 ~~~~~~~~~~~~~l~~~p 89 (150)
T 2pn6_A 72 KYGKNYHVELGNKLAQIP 89 (150)
T ss_dssp CCCTTHHHHHHHHHHTST
T ss_pred cCChhHHHHHHHHHhcCc
Confidence 44 567888888776543
No 149
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=91.39 E-value=0.43 Score=29.57 Aligned_cols=44 Identities=16% Similarity=0.177 Sum_probs=38.8
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~ 64 (90)
.|+..|--+|.+.|..|+..|+- |-.-||.-|..||+.|+|+..
T Consensus 6 ~Il~~L~~~g~vsv~eLa~~l~V--------------S~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 6 QVRDLLALRGRMEAAQISQTLNT--------------PQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHSCSBCHHHHHHHTTC--------------CHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEe
Confidence 47777888999999999998876 457999999999999999887
No 150
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=91.36 E-value=0.41 Score=28.21 Aligned_cols=46 Identities=4% Similarity=0.018 Sum_probs=37.1
Q ss_pred HHHHHHhhc-CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC
Q 034587 7 SMARKIYLR-QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK 66 (90)
Q Consensus 7 Si~RklYl~-g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~ 66 (90)
.||.-|--. +|+.+..|+...|-. .+.+.++|+.||+.|+|+..++
T Consensus 14 ~IL~~L~~~~~~~s~~eLA~~lgls--------------r~tv~~~l~~L~~~G~I~~~~~ 60 (67)
T 2heo_A 14 KILQVLSDDGGPVAIFQLVKKCQVP--------------KKTLNQVLYRLKKEDRVSSPSP 60 (67)
T ss_dssp HHHHHHHHHCSCEEHHHHHHHHCSC--------------HHHHHHHHHHHHHTTSEEEEET
T ss_pred HHHHHHHHcCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCcEecCCC
Confidence 466666545 589999999999875 4789999999999999987543
No 151
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=91.07 E-value=0.26 Score=34.67 Aligned_cols=67 Identities=12% Similarity=0.261 Sum_probs=49.6
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc--CCCCe-------------e
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE--PKGGR-------------R 70 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~--~~~GR-------------~ 70 (90)
..|++.|. ++++.+..|+...|-. .+-++.-|+.||+.|+|+.. ...|+ .
T Consensus 23 ~~IL~~L~-~~~~s~~eLA~~lglS--------------~stv~~~l~~Le~~GlI~~~~~~~~~~~~~~~~g~~~~~~~ 87 (192)
T 1uly_A 23 RKILKLLR-NKEMTISQLSEILGKT--------------PQTIYHHIEKLKEAGLVEVKRTEMKGNLVEKYYGRTADVFY 87 (192)
T ss_dssp HHHHHHHT-TCCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEEEEEETTEEEEEEEESSSEEE
T ss_pred HHHHHHHH-cCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEEeccccccchhhhcCcceEEEE
Confidence 46788888 8999999999988753 36799999999999999876 22233 3
Q ss_pred eCcchH-hhHHHHHHHhh
Q 034587 71 ITSSGQ-RDLDQVAGRIV 87 (90)
Q Consensus 71 lT~~G~-~~lD~iA~~v~ 87 (90)
||.++. ..++.++..+.
T Consensus 88 v~~~~~~~~~~~~~~~~~ 105 (192)
T 1uly_A 88 INLYLGDEELRYIARSRL 105 (192)
T ss_dssp ECSCSSCHHHHHHHHHHH
T ss_pred EecCCchhHHHHHHHHHH
Confidence 677763 45666665543
No 152
>2rkh_A Putative APHA-like transcription factor; ZP_00208345.1, STRU genomics, joint center for structural genomics, JCSG; 2.00A {Magnetospirillum magnetotacticum}
Probab=90.66 E-value=0.098 Score=37.13 Aligned_cols=37 Identities=16% Similarity=0.331 Sum_probs=27.4
Q ss_pred HHHHHHhCCcccccC-CCC------eeeCcchHhhHHHHHHHhh
Q 034587 51 ILQQLQNMNIIDIEP-KGG------RRITSSGQRDLDQVAGRIV 87 (90)
Q Consensus 51 ~LqqLE~~glV~k~~-~~G------R~lT~~G~~~lD~iA~~v~ 87 (90)
+|.+||+.|||+... .+| ..||++|+..+.+.-.+.+
T Consensus 54 ~l~~Le~~GlI~~~~~~~~rpektvY~ITe~Gr~~l~~~l~~~~ 97 (180)
T 2rkh_A 54 SIELLRYEGLVEAVDDGQGMEDDAMLAISAAGRRELHSLLTARL 97 (180)
T ss_dssp CTHHHHHTTSEECCC--------CEEEECHHHHHHHHHHHSCCC
T ss_pred HHHHHHHCCCeeeeecCCCCCccceeeeCHHHHHHHHHHHHHHh
Confidence 789999999997555 333 4799999999987655443
No 153
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=90.61 E-value=1.9 Score=29.29 Aligned_cols=70 Identities=10% Similarity=0.167 Sum_probs=52.8
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc-----C-CCCe-------eeCc
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE-----P-KGGR-------RITS 73 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~-----~-~~GR-------~lT~ 73 (90)
.|+..|.-++++.+..|++..|- |.+-++..|+.||+.|+|+.. + +-|+ .+++
T Consensus 21 ~IL~~L~~~~~~s~~eLA~~lgl--------------S~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~ 86 (171)
T 2ia0_A 21 NILRLLKKDARLTISELSEQLKK--------------PESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGK 86 (171)
T ss_dssp HHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEESC
T ss_pred HHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEECC
Confidence 57788888899999999999885 346899999999999999742 2 2354 3455
Q ss_pred c-----hHhhHHHHHHHhhcCC
Q 034587 74 S-----GQRDLDQVAGRIVVAP 90 (90)
Q Consensus 74 ~-----G~~~lD~iA~~v~~~~ 90 (90)
. ....+|.++..+..-|
T Consensus 87 ~~~~~f~~~~~~~~~~~l~~~p 108 (171)
T 2ia0_A 87 PVIEDFLERYISYISSTLSALP 108 (171)
T ss_dssp C--CHHHHHHHHHHHHHHHTST
T ss_pred ccccccchhHHHHHHHHHHCCC
Confidence 5 5557888888876544
No 154
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=90.56 E-value=0.6 Score=32.13 Aligned_cols=46 Identities=15% Similarity=0.177 Sum_probs=37.4
Q ss_pred CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCeeeCcch
Q 034587 16 QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRRITSSG 75 (90)
Q Consensus 16 g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR~lT~~G 75 (90)
+|+.+..++..++-. -..+|++|++|.++|||+... .||-.|+..-
T Consensus 43 ~~~s~~eIA~~~~i~--------------~~~l~kil~~L~~aGlv~s~rG~~GGy~Lar~p 90 (159)
T 3lwf_A 43 GPISLRSIAQDKNLS--------------EHYLEQLIGPLRNAGIVKSIRGAHGGYVLNGDP 90 (159)
T ss_dssp CCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEECSTTCEEEECSCT
T ss_pred CCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCeEEEecCCCCceEecCCH
Confidence 478999999988774 479999999999999998554 4688887544
No 155
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=89.87 E-value=0.49 Score=30.15 Aligned_cols=44 Identities=7% Similarity=0.106 Sum_probs=38.6
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~ 64 (90)
.|+..|--+|.+.|..|+..|+- |-.-||.-|..||+.|+|...
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~V--------------S~~TIRrDL~~Le~~G~l~R~ 49 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQT--------------PQPLIDAMLERMEAMGKVVRI 49 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTC--------------CHHHHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHcCCCcHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEE
Confidence 47777788999999999998876 457999999999999999876
No 156
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=89.80 E-value=0.4 Score=28.47 Aligned_cols=51 Identities=8% Similarity=0.120 Sum_probs=40.7
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK 66 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~ 66 (90)
..|+.-|+-.+|+.+..|....+-. .+. +-+-+..+|+.||+.|||+..++
T Consensus 12 ~~vL~~L~~~~~~t~~ei~~~l~~~--~~~--------s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 12 LEVMKVIWKHSSINTNEVIKELSKT--STW--------SPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp HHHHHHHHTSSSEEHHHHHHHHHHH--SCC--------CHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHcCCCCCHHHHHHHHhhc--CCc--------cHHHHHHHHHHHHHCCCeEEEec
Confidence 4678888888999999999988742 111 34678999999999999998764
No 157
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=89.44 E-value=1.9 Score=28.16 Aligned_cols=71 Identities=11% Similarity=0.165 Sum_probs=53.0
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccc-----cC-CCCee------eCc
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI-----EP-KGGRR------ITS 73 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k-----~~-~~GR~------lT~ 73 (90)
-.|+..|.-++++.+..|+...|- |.+-++..|+.||+.|+|.. ++ +-|+. ++.
T Consensus 11 ~~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~ 76 (152)
T 2cg4_A 11 RGILEALMGNARTAYAELAKQFGV--------------SPETIHVRVEKMKQAGIITGARIDVSPKQLGYDVGCFIGIIL 76 (152)
T ss_dssp HHHHHHHHHCTTSCHHHHHHHHTS--------------CHHHHHHHHHHHHHHTSEEEEEEEECTTTTTCCEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHcCCcceEEEecCHHHcCCeEEEEEEEEE
Confidence 367888888899999999998875 34689999999999999984 23 24654 344
Q ss_pred chHhhHHHHHHHhhcCC
Q 034587 74 SGQRDLDQVAGRIVVAP 90 (90)
Q Consensus 74 ~G~~~lD~iA~~v~~~~ 90 (90)
.....+|.++..+.+-|
T Consensus 77 ~~~~~~~~~~~~l~~~p 93 (152)
T 2cg4_A 77 KSAKDYPSALAKLESLD 93 (152)
T ss_dssp SSGGGHHHHHHHHHTCT
T ss_pred CCCCCHHHHHHHHhCCc
Confidence 44456888888876544
No 158
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=89.33 E-value=0.22 Score=37.53 Aligned_cols=75 Identities=19% Similarity=0.120 Sum_probs=55.3
Q ss_pred hhHHHHHHHHhh---c---CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCC---CeeeCc
Q 034587 3 ELVTSMARKIYL---R---QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG---GRRITS 73 (90)
Q Consensus 3 ~r~ASi~RklYl---~---g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~---GR~lT~ 73 (90)
.++-|++-.||- . +.+-++.|-.....- | =+...+|.+|.-|++.||++....| +..||+
T Consensus 22 ~~a~Sli~tl~Gd~~~~~g~~i~~~~Li~l~~~~---G--------i~~~avR~Al~RL~~~G~l~~~~~Gr~~~Y~Lt~ 90 (266)
T 3l09_A 22 LKLWSVLVTCLGDVSRDGVIEVSGVALSSFVERM---G--------LQPQAMRVALHRLKRDGWVESRRLGRVGFHRLSD 90 (266)
T ss_dssp CCHHHHHHHHHHHHHHTTCCCEEHHHHHHHHHHT---T--------CCHHHHHHHHHHHHHTTSEEEEEETTEEEEEECH
T ss_pred CChhHHHHHHHHHHhccCCCcccHHHHHHHHHHc---C--------CCchHHHHHHHHHHHCCCeeeeecCCcceEEECH
Confidence 367788888883 2 467788766554431 1 1236899999999999999877544 578999
Q ss_pred chHhhHHHHHHHhhc
Q 034587 74 SGQRDLDQVAGRIVV 88 (90)
Q Consensus 74 ~G~~~lD~iA~~v~~ 88 (90)
.|++.+++....|..
T Consensus 91 ~g~~~l~~~~~ri~~ 105 (266)
T 3l09_A 91 SALTQTRAVAGRIYG 105 (266)
T ss_dssp HHHHHHHTTHHHHHS
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999887776653
No 159
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=88.96 E-value=0.48 Score=34.91 Aligned_cols=50 Identities=16% Similarity=0.309 Sum_probs=38.9
Q ss_pred cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHH-HHHhCCcccccCCCCeeeCcchHhhH
Q 034587 15 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQ-QLQNMNIIDIEPKGGRRITSSGQRDL 79 (90)
Q Consensus 15 ~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~Lq-qLE~~glV~k~~~~GR~lT~~G~~~l 79 (90)
.+|+|+..|+..+|-.. .-++.+.+ .|..+|+|+..+. ||++|++|-+.|
T Consensus 274 ~~~~~~~~l~~~~~~~~--------------~t~~~~~~~~l~~~g~i~~~~~-gr~~~~~~~~~~ 324 (334)
T 1in4_A 274 GGPVGLNALAASLGVEA--------------DTLSEVYEPYLLQAGFLARTPR-GRIVTEKAYKHL 324 (334)
T ss_dssp TCCBCHHHHHHHHTSCH--------------HHHHHHTHHHHHHTTSEEEETT-EEEECHHHHHHT
T ss_pred CCcchHHHHHHHhCCCc--------------chHHHHHHHHHHHcCCeecccc-cHHhhHHHHHHh
Confidence 47889999998877532 22444444 8999999999985 999999998876
No 160
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=88.88 E-value=0.92 Score=33.46 Aligned_cols=47 Identities=13% Similarity=0.168 Sum_probs=40.5
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccc-cc
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIID-IE 64 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~-k~ 64 (90)
|-+..+-.+|-.+++++..|++.+|- |..-||.-|+.||+.|+|+ +.
T Consensus 8 ~~~~~ia~l~~~~~~~~~ela~~l~v--------------S~~tIrRdL~~l~~~G~v~iri 55 (315)
T 2w48_A 8 RLIVKIAQLYYEQDMTQAQIARELGI--------------YRTTISRLLKRGREQGIVTIAI 55 (315)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEEe
Confidence 55566777888999999999999986 5579999999999999997 44
No 161
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=88.59 E-value=0.41 Score=34.32 Aligned_cols=42 Identities=17% Similarity=0.207 Sum_probs=35.3
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcc
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 74 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~ 74 (90)
....|+..||- |..-+|.+|++|++.|+|+..+..|-.+++.
T Consensus 36 se~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 77 (243)
T 2wv0_A 36 SEREYAEQFGI--------------SRMTVRQALSNLVNEGLLYRLKGRGTFVSKP 77 (243)
T ss_dssp CHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECTTSCEEECCC
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCcEEEeCCCeEEEeCC
Confidence 67888888886 3578999999999999999888778777754
No 162
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=88.59 E-value=0.36 Score=35.37 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=34.0
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcc
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 74 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~ 74 (90)
....|+..||- |...+|.+|++|++.|+|+..+..|-.+++.
T Consensus 55 se~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 96 (272)
T 3eet_A 55 SQARIREEYGV--------------SDTVALEARKVLMAEGLVEGRSGSGTYVRER 96 (272)
T ss_dssp CHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSEEECCC--EEECCC
T ss_pred CHHHHHHHHCC--------------CHHHHHHHHHHHHHCCCEEEecCceEEEecC
Confidence 67889999886 4579999999999999999888777777654
No 163
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=88.23 E-value=0.46 Score=34.36 Aligned_cols=57 Identities=16% Similarity=0.118 Sum_probs=45.6
Q ss_pred hhHHHHHHHHhh-cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcc
Q 034587 3 ELVTSMARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 74 (90)
Q Consensus 3 ~r~ASi~RklYl-~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~ 74 (90)
.|+-.||.-|.- .+++++..|....|-.| +-+..+|+.|++.|||+++. +...|+++
T Consensus 21 ~r~l~iL~~l~~~~~~~~~~eia~~~gl~~--------------stv~r~l~tL~~~G~v~~~~-~~Y~Lg~~ 78 (265)
T 2ia2_A 21 ARGLAVIRCFDHRNQRRTLSDVARATDLTR--------------ATARRFLLTLVELGYVATDG-SAFWLTPR 78 (265)
T ss_dssp HHHHHHHHTCCSSCSSEEHHHHHHHHTCCH--------------HHHHHHHHHHHHHTSEEESS-SEEEECGG
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEecC-CEEEEcHH
Confidence 467778877654 46899999999988754 67889999999999999874 55677765
No 164
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=88.12 E-value=0.47 Score=31.49 Aligned_cols=54 Identities=9% Similarity=0.167 Sum_probs=38.1
Q ss_pred HHHHHHhhc-CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC-CCCeeeCcch
Q 034587 7 SMARKIYLR-QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP-KGGRRITSSG 75 (90)
Q Consensus 7 Si~RklYl~-g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~-~~GR~lT~~G 75 (90)
.++-.|..+ ++ .+..++..++- +-..++++|++|.++|||+... .||-.|+..-
T Consensus 13 ~~L~~La~~~~~-s~~~IA~~~~i--------------~~~~l~kIl~~L~~aGlv~s~rG~GGy~Lar~p 68 (145)
T 1xd7_A 13 HILSLISMDEKT-SSEIIADSVNT--------------NPVVVRRMISLLKKADILTSRAGVPGASLKKDP 68 (145)
T ss_dssp HHHHHHHTCSCC-CHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEECCSSSSSCEESSCG
T ss_pred HHHHHHHhCCCC-CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCceEeecCCCCceecCCH
Confidence 344444443 23 67777777665 3479999999999999998554 5788887654
No 165
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=88.01 E-value=0.36 Score=34.54 Aligned_cols=42 Identities=14% Similarity=0.204 Sum_probs=35.6
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcc
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 74 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~ 74 (90)
....|+..||- |..-+|.+|+.|++.|+|+..+..|-.+++.
T Consensus 35 se~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 76 (236)
T 3edp_A 35 NETALQEIYSS--------------SRTTIRRAVDLLVEEGLVVRKNGVGLYVQPK 76 (236)
T ss_dssp CHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECCC
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEECCceEEEccC
Confidence 67788888876 4579999999999999999988778777764
No 166
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=87.70 E-value=0.53 Score=30.12 Aligned_cols=52 Identities=19% Similarity=0.162 Sum_probs=40.9
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCe
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR 69 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR 69 (90)
.||+-|+-.+|+.+..|....+.. .+ -+-+-+-.+|+.||+.|||+..+. ||
T Consensus 39 ~VL~~L~~~~~~t~~eL~~~l~~~--~~--------~s~sTVt~~L~rLe~KGlV~R~~~-gR 90 (99)
T 2k4b_A 39 IVMRVIWSLGEARVDEIYAQIPQE--LE--------WSLATVKTLLGRLVKKEMLSTEKE-GR 90 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHTCCGG--GC--------CCHHHHHHHHHHHHHTTSCEEEEE-TT
T ss_pred HHHHHHHhCCCCCHHHHHHHHhcc--cC--------CCHhhHHHHHHHHHHCCCEEEEeC-CC
Confidence 578888888999999999987642 11 234678899999999999998763 54
No 167
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=87.51 E-value=3.2 Score=27.33 Aligned_cols=70 Identities=14% Similarity=0.077 Sum_probs=52.0
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc-----C-CCCee--------e
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE-----P-KGGRR--------I 71 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~-----~-~~GR~--------l 71 (90)
-.|+..|.-++++.+..|+...|- |.+-++..|+.||+.|+|+.. + +-|.. +
T Consensus 13 ~~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~ 78 (162)
T 2p5v_A 13 IKILQVLQENGRLTNVELSERVAL--------------SPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSI 78 (162)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEeeecccCChHHhcccEEEEEEEEE
Confidence 468888888899999999998875 346789999999999999842 1 12442 2
Q ss_pred CcchHhhHHHHHHHhhcCC
Q 034587 72 TSSGQRDLDQVAGRIVVAP 90 (90)
Q Consensus 72 T~~G~~~lD~iA~~v~~~~ 90 (90)
++.. ..++.++..+.+-|
T Consensus 79 ~~~~-~~~~~~~~~l~~~p 96 (162)
T 2p5v_A 79 RKAK-DAREDFAASVRKWP 96 (162)
T ss_dssp CSST-THHHHHHHHHTTCT
T ss_pred cCCc-hHHHHHHHHHhcCh
Confidence 4544 66888888775543
No 168
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=87.09 E-value=0.44 Score=34.00 Aligned_cols=41 Identities=12% Similarity=0.037 Sum_probs=34.2
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCc
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITS 73 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~ 73 (90)
....|+..||- |..-+|.+|+.|++.|+|+..+..|-.+++
T Consensus 31 se~~La~~~~v--------------Sr~tvr~Al~~L~~~g~i~~~~g~G~~V~~ 71 (239)
T 3bwg_A 31 VLETLMAQFEV--------------SKSTITKSLELLEQKGAIFQVRGSGIFVRK 71 (239)
T ss_dssp CHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEEETTTEEEECC
T ss_pred CHHHHHHHHCC--------------CHHHHHHHHHHHHHCCcEEEeCCceEEEec
Confidence 67889998886 457999999999999999988866766654
No 169
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=86.93 E-value=0.39 Score=34.59 Aligned_cols=41 Identities=7% Similarity=0.045 Sum_probs=33.8
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcc
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 74 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~ 74 (90)
....|+..||- |...+|.+|++|++.|||+. +..|-.+++.
T Consensus 38 se~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~-~g~Gt~V~~~ 78 (248)
T 3f8m_A 38 AEREIAEQFEV--------------ARETVRQALRELLIDGRVER-RGRTTVVARP 78 (248)
T ss_dssp CHHHHHHHTTC--------------CHHHHHHHHHHHHHTTSEEE-ETTEEEECCC
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEe-CCCEEEEccC
Confidence 66788888876 45799999999999999999 8777766653
No 170
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=86.41 E-value=0.94 Score=26.74 Aligned_cols=54 Identities=7% Similarity=-0.003 Sum_probs=40.1
Q ss_pred hHHHHHHHHhhc--CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC
Q 034587 4 LVTSMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK 66 (90)
Q Consensus 4 r~ASi~RklYl~--g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~ 66 (90)
+--.|+.-|.-. +++.+..|........ | .-|-+-++..|+.||+.|+|.+...
T Consensus 18 ~r~~IL~~l~~~~~~~~s~~el~~~l~~~~-----~----~is~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 18 PRLKILEVLQEPDNHHVSAEDLYKRLIDMG-----E----EIGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp HHHHHHHHHTSGGGSSBCHHHHHHHHHHTT-----C----CCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhC-----C----CCCHhhHHHHHHHHHHCCCeEEEee
Confidence 345677777654 6899999999884321 1 2355789999999999999987653
No 171
>3kfw_X Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.50A {Mycobacterium tuberculosis}
Probab=85.52 E-value=1.1 Score=33.11 Aligned_cols=75 Identities=12% Similarity=0.065 Sum_probs=56.4
Q ss_pred ChhhHHHHHHHHhhc---CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHh
Q 034587 1 MSELVTSMARKIYLR---QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQR 77 (90)
Q Consensus 1 ~~~r~ASi~RklYl~---g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~ 77 (90)
|..++=|++=.||+- +.+-++.|-..... =|+ +...+|.+|--|-+.||++... .|..||+.|++
T Consensus 1 ~~~~arSlIlsll~g~~g~~i~~~~Li~l~~~---~Gi--------~e~avRtAlsRL~~~G~L~~~~-~GY~LT~~~~~ 68 (247)
T 3kfw_X 1 MSLTARSVVLSVLLGAHPAWATASELIQLTAD---FGI--------KETTLRVALTRMVGAGDLVRSA-DGYRLSDRLLA 68 (247)
T ss_dssp -CCCHHHHHHHHHTTTTTSCBCHHHHHHHHTT---TTC--------CHHHHHHHHHHHHHTTSEEEET-TEEEECHHHHH
T ss_pred CCCCCceeeEeeecCCCCCcccHHHHHHHHHH---cCC--------ChHHHHHHHHHHHHcCCeeccC-CceeeCHHHHH
Confidence 556677777777653 46888888777653 232 2368999999999999999765 57999999999
Q ss_pred hHHHHHHHhh
Q 034587 78 DLDQVAGRIV 87 (90)
Q Consensus 78 ~lD~iA~~v~ 87 (90)
.+++....|.
T Consensus 69 ~~~~~~~rI~ 78 (247)
T 3kfw_X 69 RQRRQDEAMR 78 (247)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHhc
Confidence 8887766554
No 172
>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2
Probab=84.59 E-value=0.64 Score=36.16 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=42.1
Q ss_pred hcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHHHHHh
Q 034587 14 LRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRI 86 (90)
Q Consensus 14 l~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~iA~~v 86 (90)
...++-...+...||-. +..--.. .-..|++|++.|||+.+. +.=+||++|+-.+|.|+...
T Consensus 379 ~~~g~~~~~~~~~~g~~---------~~~~~~~-~~~~l~~~~~~gll~~~~-~~~~lT~~G~~~~~~i~~~f 440 (457)
T 1olt_A 379 CNFRLDYSPIEQQWDLL---------FADYFAE-DLKLLAPLAKDGLVDVDE-KGIQVTAKGRLLIRNICMCF 440 (457)
T ss_dssp HHSEEEHHHHHHHTTCC---------HHHHTHH-HHHHHHHHHHTTSEEECS-SEEEECTTTGGGHHHHHHTT
T ss_pred HcCCCCHHHHHHHhCCC---------HHHHHHH-HHHHHHHHHHCCCEEEEC-CEEEECHhhHHHHHHHHHHH
Confidence 34566667777777642 0000011 123478999999998764 46689999999999999875
No 173
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=84.56 E-value=1.6 Score=26.95 Aligned_cols=60 Identities=12% Similarity=0.201 Sum_probs=44.9
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCC---eeeCcchHhhHHH
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGG---RRITSSGQRDLDQ 81 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~G---R~lT~~G~~~lD~ 81 (90)
.|++.+.-+++..+..|+...|-. .+-+.+-|+.||++ +|+...+|. -.||+.+...+-+
T Consensus 31 ~IL~~l~~~~~~~~~ela~~l~is--------------~stvs~hL~~L~~~-lv~~~~~gr~~~y~l~~~~~~~~~~ 93 (99)
T 2zkz_A 31 KIVNELYKHKALNVTQIIQILKLP--------------QSTVSQHLCKMRGK-VLKRNRQGLEIYYSINNPKVEGIIK 93 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHHHTCC--------------HHHHHHHHHHHBTT-TBEEEEETTEEEEECCCHHHHHHHH
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHH-hhhheEeCcEEEEEEChHHHHHHHH
Confidence 466666678999999999988764 36888999999999 998665432 3478877655543
No 174
>2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638}
Probab=84.10 E-value=1.8 Score=32.48 Aligned_cols=57 Identities=12% Similarity=0.218 Sum_probs=46.2
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHH
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQ 81 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~ 81 (90)
.++|.| ++|..+..|+..+|-. -..++..|++|.++|+++... |-++|+.+...|.+
T Consensus 47 ~ll~~L--~~~~t~~eLa~~~g~~--------------~~~v~~~L~~l~~~gll~~~~--~~~lt~~~~~~l~~ 103 (373)
T 2qm3_A 47 NVLSAV--LASDDIWRIVDLSEEP--------------LPLVVAILESLNELGYVTFED--GVKLTEKGEELVAE 103 (373)
T ss_dssp HHHHHH--HHCSCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEECSS--SSEECHHHHHHHHH
T ss_pred HHHHHh--cCCCCHHHHHHHhCCC--------------hHHHHHHHHHHhhCCcEEECC--CEEECHHHHHHHHh
Confidence 357777 7888999999888653 357999999999999998754 59999999877765
No 175
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=84.06 E-value=4.8 Score=25.71 Aligned_cols=46 Identities=4% Similarity=0.123 Sum_probs=37.8
Q ss_pred HHHHHHHhhcCC--CchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC
Q 034587 6 TSMARKIYLRQG--LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 6 ASi~RklYl~g~--vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~ 65 (90)
..|+..|+-.++ +.+..|+...|- |.+-+...|+.||+.|+|+..+
T Consensus 29 ~~il~~L~~~~~~~~t~~eLa~~l~~--------------s~sTV~r~L~~L~~~GlV~r~~ 76 (123)
T 3r0a_A 29 LNVMKSFLNEPDRWIDTDALSKSLKL--------------DVSTVQRSVKKLHEKEILQRSQ 76 (123)
T ss_dssp HHHHHHHHHSTTCCEEHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHCCCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEeeC
Confidence 567888887665 899999998873 5578999999999999998643
No 176
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=82.08 E-value=0.59 Score=34.12 Aligned_cols=42 Identities=5% Similarity=0.002 Sum_probs=33.3
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccc
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI 63 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k 63 (90)
.|++.|+ .+|..+..|+...|- |.+-+.+.|+.||++|||+.
T Consensus 16 ~IL~~L~-~g~~s~~ELa~~lgl--------------S~stVs~hL~~Le~aGLV~~ 57 (232)
T 2qlz_A 16 DLLSHLT-CMECYFSLLSSKVSV--------------SSTAVAKHLKIMEREGVLQS 57 (232)
T ss_dssp HHHHHHT-TTTTCSSSSCTTCCC--------------CHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHH-hCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEE
Confidence 4777776 688888888776543 45789999999999999987
No 177
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=80.58 E-value=2.7 Score=29.72 Aligned_cols=44 Identities=14% Similarity=0.143 Sum_probs=36.0
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~ 65 (90)
.|+..| ..+|..+..|+...| -|.+-+-..|+.||+.|||+...
T Consensus 19 ~IL~~L-~~~~~s~~eLa~~l~--------------is~stvs~hLk~Le~~GLV~~~~ 62 (202)
T 2p4w_A 19 RILFLL-TKRPYFVSELSRELG--------------VGQKAVLEHLRILEEAGLIESRV 62 (202)
T ss_dssp HHHHHH-HHSCEEHHHHHHHHT--------------CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHH-HhCCCCHHHHHHHHC--------------cCHHHHHHHHHHHHHCCceEEEe
Confidence 466666 378999999999885 35578999999999999998654
No 178
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=79.80 E-value=0.75 Score=30.84 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHHhCCcccccC
Q 034587 44 SGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~ 65 (90)
.|++.|.+|++||+-|+|....
T Consensus 72 ~gSLAR~aLreL~~kGlIk~V~ 93 (108)
T 3u5c_Z 72 GGSLARIALRHLEKEGIIKPIS 93 (108)
T ss_dssp CTTHHHHHHHHHSSSSSCEEEE
T ss_pred hHHHHHHHHHHHHHCCCEEEEe
Confidence 4789999999999999997554
No 179
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=79.38 E-value=2.3 Score=26.85 Aligned_cols=45 Identities=11% Similarity=0.063 Sum_probs=35.0
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~ 65 (90)
-.|+.-|.-+| +.+..|++..|-. .+-+|.-|+.||+.|+|.+.+
T Consensus 20 ~~IL~lL~~~g-~sa~eLAk~LgiS--------------k~aVr~~L~~Le~eG~I~~~~ 64 (82)
T 1oyi_A 20 CEAIKTIGIEG-ATAAQLTRQLNME--------------KREVNKALYDLQRSAMVYSSD 64 (82)
T ss_dssp HHHHHHHSSST-EEHHHHHHHSSSC--------------HHHHHHHHHHHHHHTSSEECS
T ss_pred HHHHHHHHHcC-CCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEeCC
Confidence 34554455344 9999999988864 378999999999999998764
No 180
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=79.32 E-value=0.4 Score=34.45 Aligned_cols=42 Identities=17% Similarity=0.150 Sum_probs=6.5
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcc
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSS 74 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~ 74 (90)
....|+..||- |..-+|.+|++|++.|+|+..+..|-.+++.
T Consensus 42 se~~La~~~~v--------------Sr~tvr~Al~~L~~~G~i~~~~g~G~~V~~~ 83 (247)
T 2ra5_A 42 NEIELAARLGL--------------SRPTVRQAIQSLVDKGLLVRRRGVGTQVVHS 83 (247)
T ss_dssp ----------------------------------------CEEEEEC---------
T ss_pred CHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCEEEEcCceeEEecc
Confidence 45666666665 3468999999999999999888767777654
No 181
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=79.16 E-value=2.4 Score=30.35 Aligned_cols=50 Identities=10% Similarity=0.024 Sum_probs=42.3
Q ss_pred hhHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCC
Q 034587 3 ELVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG 67 (90)
Q Consensus 3 ~r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~ 67 (90)
.|-..|+.-+- .|++.+..+.+.-|-+ =+-++++|-+||+.|+|+..+.|
T Consensus 11 erk~~ILE~Lk-~G~~~t~~Iak~LGlS--------------hg~aq~~Ly~LeREG~V~~Vk~G 60 (165)
T 2vxz_A 11 VRLRDILALLA-DGCKTTSLIQQRLGLS--------------HGRAKALIYVLEKEGRVTRVAFG 60 (165)
T ss_dssp HHHHHHHHHHT-TCCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSCEEEEET
T ss_pred HHHHHHHHHHH-hCCccHHHHHHHhCCc--------------HHHHHHHHHHHHhcCceEEEEEc
Confidence 46677887777 9999999999998874 36899999999999999988754
No 182
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=79.05 E-value=0.76 Score=30.81 Aligned_cols=22 Identities=23% Similarity=0.514 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHHhCCcccccC
Q 034587 44 SGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~ 65 (90)
.|++.|.+|++||+-|+|....
T Consensus 73 ~gSLAR~aLreL~~kGlIk~V~ 94 (108)
T 3iz6_V 73 NGSLARQAIKDLESRGAIRVVS 94 (108)
T ss_dssp CCHHHHHHHHHHHHHHTSCEEC
T ss_pred cHHHHHHHHHHHHHCCCEEEEe
Confidence 4789999999999999997654
No 183
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=79.01 E-value=3.1 Score=28.50 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=29.6
Q ss_pred CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCe
Q 034587 17 GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGR 69 (90)
Q Consensus 17 ~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR 69 (90)
|..+..|+..+|-. +. -++..|++||+.|+|+.++...|
T Consensus 24 ~~s~~eia~~lgl~-------------~~-tv~~~l~~Le~~G~i~~~~~~~r 62 (196)
T 3k2z_A 24 PPSVREIARRFRIT-------------PR-GALLHLIALEKKGYIERKNGKPR 62 (196)
T ss_dssp CCCHHHHHHHHTSC-------------HH-HHHHHHHHHHHTTSEECC---TT
T ss_pred CCCHHHHHHHcCCC-------------cH-HHHHHHHHHHHCCCEEecCCCcc
Confidence 78999999999875 12 37888999999999998864433
No 184
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=78.77 E-value=4.1 Score=25.56 Aligned_cols=42 Identities=17% Similarity=0.072 Sum_probs=32.6
Q ss_pred HHHHHHhhcC--CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccc
Q 034587 7 SMARKIYLRQ--GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIID 62 (90)
Q Consensus 7 Si~RklYl~g--~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~ 62 (90)
.|+..|+-.+ ++-...|++.-+=. -..+-.||+.||+.|||.
T Consensus 24 ~Vl~~I~~~g~~gi~qkeLa~~~~l~--------------~~tvt~iLk~LE~kglIk 67 (91)
T 2dk5_A 24 LVYQIIEDAGNKGIWSRDVRYKSNLP--------------LTEINKILKNLESKKLIK 67 (91)
T ss_dssp HHHHHHHHHCTTCEEHHHHHHHTTCC--------------HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHcCCCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCCEE
Confidence 4677777744 67777888866543 357899999999999998
No 185
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=78.72 E-value=1.8 Score=29.29 Aligned_cols=33 Identities=12% Similarity=0.032 Sum_probs=24.7
Q ss_pred hhHHHHHHHHHHhCCcccccCC---C--C-----eeeCcchHh
Q 034587 45 GAIARHILQQLQNMNIIDIEPK---G--G-----RRITSSGQR 77 (90)
Q Consensus 45 g~iiR~~LqqLE~~glV~k~~~---~--G-----R~lT~~G~~ 77 (90)
-+-+=-+|..||+.|||+.... + + -.||++|+.
T Consensus 54 ~gtlYp~L~rLe~~Gll~~~~~~~~g~~r~~rkyY~lT~~G~~ 96 (122)
T 1bm9_A 54 HTEVYRSLHELLDDGILKQIKVKKEGAKLQEVVLYQFKDYEAA 96 (122)
T ss_dssp HHHHHHHHHHHHHTTSEEEEEEECTTSTTCEEEEEEESCHHHH
T ss_pred cccHHHHHHHHHHCCCeEEEEeecCCCCCCceeEEEEChhhhh
Confidence 3456678999999999974432 2 2 369999999
No 186
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=78.15 E-value=5.7 Score=29.50 Aligned_cols=59 Identities=12% Similarity=0.066 Sum_probs=46.5
Q ss_pred hhhHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccc-ccCCCCeeeCcc
Q 034587 2 SELVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIID-IEPKGGRRITSS 74 (90)
Q Consensus 2 ~~r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~-k~~~~GR~lT~~ 74 (90)
+.|--.|+..|--.+++.+..|+..+|- |..-||+-|+.||+.|++. ..+..|.+|.+.
T Consensus 4 ~~r~~~Il~~L~~~~~~s~~eLa~~l~v--------------S~~ti~r~l~~L~~~G~~i~~~~g~GY~l~~~ 63 (321)
T 1bia_A 4 NTVPLKLIALLANGEFHSGEQLGETLGM--------------SRAAINKHIQTLRDWGVDVFTVPGKGYSLPEP 63 (321)
T ss_dssp CHHHHHHHHHHTTSSCBCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTCCCEEETTTEEECSSC
T ss_pred chHHHHHHHHHHcCCCcCHHHHHHHHCC--------------CHHHHHHHHHHHHhCCCcEEEecCCCcEEeec
Confidence 4677788888876678999999999975 4468999999999999985 444457777654
No 187
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=77.20 E-value=6.4 Score=25.46 Aligned_cols=44 Identities=9% Similarity=0.106 Sum_probs=37.4
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccc
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI 63 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k 63 (90)
-.|+..|.-++++.+..|+...|-. .+-++..|+.||+.|+|+.
T Consensus 10 ~~iL~~L~~~~~~s~~ela~~lg~s--------------~~tv~~~l~~L~~~G~i~~ 53 (150)
T 2w25_A 10 RILVRELAADGRATLSELATRAGLS--------------VSAVQSRVRRLESRGVVQG 53 (150)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEE
Confidence 4678888778999999999988763 3678999999999999964
No 188
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=76.05 E-value=5.5 Score=24.54 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=35.7
Q ss_pred HHHHHHhhcC---CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC
Q 034587 7 SMARKIYLRQ---GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 7 Si~RklYl~g---~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~ 65 (90)
.|+.-|--.+ ++.+..|++..|-. .+-|+..|..||+.|+|+...
T Consensus 14 ~IL~~L~~~~pg~~~t~~eLA~~Lgvs--------------r~tV~~~L~~Le~~G~I~~~g 61 (81)
T 1qbj_A 14 RILKFLEELGEGKATTAHDLSGKLGTP--------------KKEINRVLYSLAKKGKLQKEA 61 (81)
T ss_dssp HHHHHHHHHCTTCCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEecC
Confidence 4665555667 79999999999853 257999999999999998653
No 189
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=75.98 E-value=1.6 Score=30.62 Aligned_cols=22 Identities=14% Similarity=0.540 Sum_probs=19.1
Q ss_pred chhHHHHHHHHHHhCCcccccC
Q 034587 44 SGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~ 65 (90)
+||+.|.+|++||+-|+|....
T Consensus 76 ~gSLARkaLreL~~kGlIk~V~ 97 (143)
T 2xzm_8 76 NGSLARQLMRTMADRKLVEKVA 97 (143)
T ss_dssp CHHHHHHHHHHHHHTTSEEEEE
T ss_pred hHHHHHHHHHHHHHCCCEEEEe
Confidence 5799999999999999997443
No 190
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=75.30 E-value=3.2 Score=27.95 Aligned_cols=38 Identities=24% Similarity=0.309 Sum_probs=28.4
Q ss_pred hHHHHHHHHHHhC---CcccccCC----CCeeeCcchHhhHHHHH
Q 034587 46 AIARHILQQLQNM---NIIDIEPK----GGRRITSSGQRDLDQVA 83 (90)
Q Consensus 46 ~iiR~~LqqLE~~---glV~k~~~----~GR~lT~~G~~~lD~iA 83 (90)
+-+=..+++||+. .|++.... +|=.||+.|+.+++..-
T Consensus 53 savS~~I~~LE~~lG~~Lf~R~~~G~~grg~~LT~~G~~ll~~a~ 97 (135)
T 2ijl_A 53 RRAWLLVDALNHMFRQPVICSQRGGKQGGGAALTVFGAELLERYR 97 (135)
T ss_dssp HHHHHHHHHHHHHBSSCSEEECCC------EEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCeeEEecCCCCCCCceeECHHHHHHHHHHH
Confidence 4566678999987 78887752 47789999999987653
No 191
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=74.98 E-value=1.8 Score=31.04 Aligned_cols=33 Identities=15% Similarity=0.222 Sum_probs=26.2
Q ss_pred HHHHHHH-HHHhCCcccccCCCCeeeCcchHhhHH
Q 034587 47 IARHILQ-QLQNMNIIDIEPKGGRRITSSGQRDLD 80 (90)
Q Consensus 47 iiR~~Lq-qLE~~glV~k~~~~GR~lT~~G~~~lD 80 (90)
-+...++ -|.+.|+|...+ .||++|++|...|.
T Consensus 295 tl~~~l~~~l~~~gli~~~~-~g~~~t~~~~~~~~ 328 (338)
T 3pfi_A 295 TIEDVIEPYLLANGYIERTA-KGRIASAKSYSALK 328 (338)
T ss_dssp HHHHTTHHHHHHTTSEEEET-TEEEECHHHHHHHH
T ss_pred HHHHHHhHHHHHcCceecCC-CcccccHHHHHHhc
Confidence 3443344 788999998886 69999999999986
No 192
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=74.03 E-value=7 Score=29.39 Aligned_cols=60 Identities=17% Similarity=0.178 Sum_probs=45.3
Q ss_pred ChhhHHHHHHHHhhc--CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCc-ccccCCCCeeeCcc
Q 034587 1 MSELVTSMARKIYLR--QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNI-IDIEPKGGRRITSS 74 (90)
Q Consensus 1 ~~~r~ASi~RklYl~--g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~gl-V~k~~~~GR~lT~~ 74 (90)
|...-..|+..|.-. .++..+.|+..+|-. ..-|++.+++|++.|+ |+..+..|.+|.+.
T Consensus 1 M~~~~~~iL~~L~~~~g~~~Sg~eLa~~lgvS--------------r~aV~k~i~~L~~~G~~i~~~~~~GY~L~~~ 63 (323)
T 3rkx_A 1 MSKYSQDVLQLLYKNKPNYISGQSIAESLNIS--------------RTAVKKVIDQLKLEGCKIDSVNHKGHLLQQL 63 (323)
T ss_dssp --CHHHHHHHHHHHHTTSCBCHHHHHHHHTSC--------------HHHHHHHHHHHHHTTCEEEEETTTEEEEEEC
T ss_pred CchHHHHHHHHHHhCCCCccCHHHHHHHHCCC--------------HHHHHHHHHHHHhcCCeEEEeCCCeEEEecC
Confidence 444456788888753 389999999999863 4789999999999999 55556678888753
No 193
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=72.40 E-value=10 Score=24.46 Aligned_cols=68 Identities=16% Similarity=0.168 Sum_probs=48.1
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc-----C-CCCeeeC------cc
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE-----P-KGGRRIT------SS 74 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~-----~-~~GR~lT------~~ 74 (90)
.|+..|.-++++.+..|+...|-. .+-++..|+.||+.|+|+.. + +-|..++ -.
T Consensus 9 ~il~~L~~~~~~s~~ela~~lg~s--------------~~tv~~~l~~L~~~G~i~~~~~~~d~~~~g~~~~a~v~v~~~ 74 (144)
T 2cfx_A 9 NIIEELKKDSRLSMRELGRKIKLS--------------PPSVTERVRQLESFGIIKQYTLEVDQKKLGLPVSCIVEATVK 74 (144)
T ss_dssp HHHHHHHHCSCCCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEEEEECTGGGTCCEEEEEEEEEG
T ss_pred HHHHHHHHcCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCeEEEecccChhhcCceEEEEEEEEEC
Confidence 578888888999999999988753 46889999999999999742 2 2244321 11
Q ss_pred hHhhHHHHHHHhhcC
Q 034587 75 GQRDLDQVAGRIVVA 89 (90)
Q Consensus 75 G~~~lD~iA~~v~~~ 89 (90)
. ..+|.++..+.+-
T Consensus 75 ~-~~~~~~~~~l~~~ 88 (144)
T 2cfx_A 75 N-ADYERFKSYIQTL 88 (144)
T ss_dssp G-GCHHHHHHHHHTC
T ss_pred c-ccHHHHHHHHhcC
Confidence 1 2267777776543
No 194
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=70.45 E-value=9.2 Score=24.77 Aligned_cols=69 Identities=12% Similarity=0.155 Sum_probs=49.4
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc-----C-CCCeee------Cc
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE-----P-KGGRRI------TS 73 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~-----~-~~GR~l------T~ 73 (90)
-.|+..|.-++++.+..|+...|- |.+-++..|+.||+.|+|... + +-|..+ +-
T Consensus 10 ~~il~~L~~~~~~s~~ela~~lg~--------------s~~tv~~~l~~L~~~G~i~~~~~~~d~~~~G~~~~a~v~v~~ 75 (151)
T 2cyy_A 10 KKIIKILQNDGKAPLREISKITGL--------------AESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKV 75 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHCS--------------CHHHHHHHHHHHHHHTSSCCCCCCCCGGGGTCCEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEEEECHHHCCccEEEEEEEEE
Confidence 367888888899999999999875 346889999999999999752 1 235432 21
Q ss_pred chHhhHHHHHHHhhcC
Q 034587 74 SGQRDLDQVAGRIVVA 89 (90)
Q Consensus 74 ~G~~~lD~iA~~v~~~ 89 (90)
. ...+|.++..+..-
T Consensus 76 ~-~~~~~~~~~~l~~~ 90 (151)
T 2cyy_A 76 K-AGKYSEVASNLAKY 90 (151)
T ss_dssp C-TTCHHHHHHHHHTC
T ss_pred C-cccHHHHHHHHhcC
Confidence 1 34567777776543
No 195
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=68.36 E-value=4.2 Score=27.51 Aligned_cols=37 Identities=16% Similarity=0.243 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHhC---CcccccCCCCeeeCcchHhhHHHHH
Q 034587 46 AIARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVA 83 (90)
Q Consensus 46 ~iiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~lD~iA 83 (90)
+-+=+.+++||+. .|++.+. .|=.||+.|+.+++.+-
T Consensus 30 ~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~ 69 (294)
T 1ixc_A 30 PPITRQMQALEADLGVVLLERSH-RGIELTAAGHAFLEDAR 69 (294)
T ss_dssp HHHHHHHHHHHHHHTSCCBC------CCBCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHCCEEEEeCC-CCeeECHhHHHHHHHHH
Confidence 3456678899986 7787764 58899999999987653
No 196
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=68.35 E-value=10 Score=24.44 Aligned_cols=70 Identities=16% Similarity=0.162 Sum_probs=49.2
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccc-----cC-CCCeeeC------c
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI-----EP-KGGRRIT------S 73 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k-----~~-~~GR~lT------~ 73 (90)
-.|+..|.-++++.+..|+...|-. .+-++..|+.||+.|+|.. ++ +-|..++ -
T Consensus 12 ~~il~~L~~~~~~s~~ela~~lg~s--------------~~tv~~~l~~L~~~G~i~~~~~~~~~~~~g~~~~a~v~v~~ 77 (151)
T 2dbb_A 12 MQLVKILSENSRLTYRELADILNTT--------------RQRIARRIDKLKKLGIIRKFTIIPDIDKLGYMYAIVLIKSK 77 (151)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHTTSC--------------HHHHHHHHHHHHHHTSEEEEEEEECTGGGTEEEEEEEEEES
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCCEEEEEecCChHHhCCCEEEEEEEEe
Confidence 3678888888999999999988753 3678999999999999973 23 2365321 1
Q ss_pred chHhhHHHHHHHhhcCC
Q 034587 74 SGQRDLDQVAGRIVVAP 90 (90)
Q Consensus 74 ~G~~~lD~iA~~v~~~~ 90 (90)
. ....+.++..+.+-|
T Consensus 78 ~-~~~~~~~~~~l~~~p 93 (151)
T 2dbb_A 78 V-PSDADKVISEISDIE 93 (151)
T ss_dssp S-HHHHHHHHHHHTTCT
T ss_pred C-CCCHHHHHHHHHcCC
Confidence 1 123567777765443
No 197
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=67.36 E-value=16 Score=29.34 Aligned_cols=76 Identities=8% Similarity=-0.026 Sum_probs=53.5
Q ss_pred HHHHHHHHh----hcCCCchhHHHHHhcCCCCCCCCCC-c-cccCchhHHHHHHHHHHhCCcccccCC---CC----eee
Q 034587 5 VTSMARKIY----LRQGLGVGSFRRIYGGSKRNGSRPP-H-FCKSSGAIARHILQQLQNMNIIDIEPK---GG----RRI 71 (90)
Q Consensus 5 ~ASi~RklY----l~g~vGV~~Lr~~YGg~krrG~~P~-h-~~~asg~iiR~~LqqLE~~glV~k~~~---~G----R~l 71 (90)
|-.++.-|| ....+|+..+...+-|+++.-++-. | ...-+-.-++.++.||-..|+++.+.. -+ =.+
T Consensus 446 ~~~~l~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 525 (591)
T 2v1x_A 446 CRDLIKILKQAEELNEKLTPLKLIDSWMGKGAAKLRVAGVVAPTLPREDLEKIIAHFLIQQYLKEDYSFTAYATISYLKI 525 (591)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHTTCSCGGGCCTTCCCCSCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCcccHHHHHHHHhCCCchHHHhcCCCcCcCCHHHHHHHHHHHHHcCCcEEecccCCCceeEEeeE
Confidence 334455555 5788999999999988765543322 2 244566789999999999999987532 12 258
Q ss_pred CcchHhhHH
Q 034587 72 TSSGQRDLD 80 (90)
Q Consensus 72 T~~G~~~lD 80 (90)
|++++..|.
T Consensus 526 ~~~~~~~~~ 534 (591)
T 2v1x_A 526 GPKANLLNN 534 (591)
T ss_dssp CGGGGGGGS
T ss_pred CHHHHHHhc
Confidence 999987763
No 198
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=65.55 E-value=6.8 Score=26.61 Aligned_cols=37 Identities=14% Similarity=0.303 Sum_probs=28.1
Q ss_pred hHHHHHHHHHHhC---CcccccCCCCeeeCcchHhhHHHHH
Q 034587 46 AIARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVA 83 (90)
Q Consensus 46 ~iiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~lD~iA 83 (90)
+-+=+.+++||+. .|++... .|=.||+.|+.+++.+-
T Consensus 32 ~avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~ 71 (306)
T 3hhg_A 32 SAVSRIVKRLEEKLGVNLLNRTT-RQLSLTEEGAQYFRRAQ 71 (306)
T ss_dssp HHHHHHHHHHHHHHTSCCEETTS-SSCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEeecC-CCeeECHhHHHHHHHHH
Confidence 3556678889874 6777765 58899999999887654
No 199
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=64.75 E-value=5.7 Score=30.27 Aligned_cols=51 Identities=12% Similarity=0.152 Sum_probs=33.7
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCee
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRR 70 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~ 70 (90)
...|+..++-++-+.+..+....|- |..-+|..|++|++.|+|++.. .||.
T Consensus 299 ~~~ll~~l~~~p~~t~~~~~~~~gv--------------S~~Ta~r~L~~L~e~GiL~~~~-~gR~ 349 (373)
T 2qc0_A 299 SHELVQVIFEQPYCRIQNLVESGLA--------------KRQTASVYLKQLCDIGVLEEVQ-SGKE 349 (373)
T ss_dssp CHHHHHHHHHCSEEEHHHHHHTSSS--------------CHHHHHHHHHHHHHTTSCEEC---CCS
T ss_pred HHHHHHHHHhCCcccHHHHHHHhCC--------------CHHHHHHHHHHHHHCCcEEEec-CCCc
Confidence 3445555555544566666665443 4568899999999999998775 4664
No 200
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=63.10 E-value=8.8 Score=23.05 Aligned_cols=45 Identities=11% Similarity=0.071 Sum_probs=34.6
Q ss_pred HHHHHHhhcC---CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC
Q 034587 7 SMARKIYLRQ---GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 7 Si~RklYl~g---~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~ 65 (90)
.|+.-|.-.+ ++.+..|++..|-.+ +-|+..|..||+.|+|+...
T Consensus 18 ~IL~~L~~~~~~~~~t~~eLA~~Lgvs~--------------~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 18 RILKFLEELGEGKATTAHDLSGKLGTPK--------------KEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHCSSSCEEHHHHHHHHCCCH--------------HHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHcCCCCCcCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEecC
Confidence 3555455567 789999999888532 57888999999999998653
No 201
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=62.86 E-value=19 Score=24.22 Aligned_cols=70 Identities=13% Similarity=0.189 Sum_probs=50.1
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc-----C-CCCeee------Cc
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE-----P-KGGRRI------TS 73 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~-----~-~~GR~l------T~ 73 (90)
-.|++.|.-++.+.+..|+...|- |..-++.-|+.||+.|+|+.. + +-|+.+ +-
T Consensus 30 ~~IL~~L~~~~~~s~~eLA~~lgl--------------S~~tv~~rl~~L~~~G~I~~~~a~vd~~~~G~~~~a~v~v~~ 95 (171)
T 2e1c_A 30 KKIIKILQNDGKAPLREISKITGL--------------AESTIHERIRKLRESGVIKKFTAIIDPEALGYSMLAFILVKV 95 (171)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHTS--------------CHHHHHHHHHHHHHTTSSCCCCCCCCGGGGTCCEEEEEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEeeeEEECHHHcCCCEEEEEEEEE
Confidence 367888888899999999999875 346789999999999999752 1 235532 11
Q ss_pred chHhhHHHHHHHhhcCC
Q 034587 74 SGQRDLDQVAGRIVVAP 90 (90)
Q Consensus 74 ~G~~~lD~iA~~v~~~~ 90 (90)
. ...+|.++..+.+-|
T Consensus 96 ~-~~~~~~v~~~l~~~p 111 (171)
T 2e1c_A 96 K-AGKYSEVASNLAKYP 111 (171)
T ss_dssp C-TTCHHHHHHHHHTST
T ss_pred C-cchHHHHHHHHhcCc
Confidence 1 345677777775543
No 202
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=62.29 E-value=6.6 Score=26.87 Aligned_cols=36 Identities=17% Similarity=0.090 Sum_probs=27.8
Q ss_pred HHHHHHHHHHhC---CcccccCCCCeeeCcchHhhHHHHH
Q 034587 47 IARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVA 83 (90)
Q Consensus 47 iiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~lD~iA 83 (90)
-+=+.+++||+. .|++... .|=.||+.|+.+++.+-
T Consensus 40 avS~~I~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~ 78 (310)
T 2esn_A 40 AFSHALGRLRQGLDDELFLRQG-NRMQPTQRAEHLAAAVA 78 (310)
T ss_dssp HHHHHHHHHHHHHTSCCEEEET-TEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCcceeecC-CCccccHHHHHHHHHHH
Confidence 455678899985 7777775 58899999999887754
No 203
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=62.19 E-value=27 Score=25.17 Aligned_cols=52 Identities=12% Similarity=0.105 Sum_probs=40.0
Q ss_pred HHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCC--CeeeCcchH
Q 034587 10 RKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKG--GRRITSSGQ 76 (90)
Q Consensus 10 RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~--GR~lT~~G~ 76 (90)
..| -.+|+.+..|+...|-. -..++..|..|..+|+++...++ .-.+|+.+.
T Consensus 43 ~~l-~~~~~t~~eLA~~~g~~--------------~~~l~r~Lr~L~~~Gll~~~~~~~~~y~~t~~s~ 96 (374)
T 1qzz_A 43 DHL-LAGADTLAGLADRTDTH--------------PQALSRLVRHLTVVGVLEGGEKQGRPLRPTRLGM 96 (374)
T ss_dssp HHH-HTTCCSHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEECCCC-CCCCEECTTGG
T ss_pred HHH-hCCCCCHHHHHHHhCcC--------------HHHHHHHHHHHhhCCCEEEeCCCCeEEEEChHHH
Confidence 344 36899999999988762 25799999999999999876555 577887654
No 204
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=61.17 E-value=19 Score=23.77 Aligned_cols=71 Identities=17% Similarity=0.206 Sum_probs=51.8
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc-----C-CCCeee--------
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE-----P-KGGRRI-------- 71 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~-----~-~~GR~l-------- 71 (90)
-.|++-|--++++.+..|++..|- |..-++.-++.||+.|+|... + +-|..+
T Consensus 6 ~~il~~L~~~~~~s~~~la~~lg~--------------s~~tv~~rl~~L~~~g~i~~~~a~~~~~~lG~~~~a~v~v~v 71 (162)
T 3i4p_A 6 RKILRILQEDSTLAVADLAKKVGL--------------STTPCWRRIQKMEEDGVIRRRVALLDPVKVNTKVTVFVSIRT 71 (162)
T ss_dssp HHHHHHHTTCSCSCHHHHHHHHTC--------------CHHHHHHHHHHHHHTTSSCCCCCCCCTTTTTCCEEEEEEEEC
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeeeceeeeCHHHhcCcEEEEEEEEE
Confidence 357788888899999999999875 447899999999999999832 2 224432
Q ss_pred CcchHhhHHHHHHHhhcCC
Q 034587 72 TSSGQRDLDQVAGRIVVAP 90 (90)
Q Consensus 72 T~~G~~~lD~iA~~v~~~~ 90 (90)
.+.....+|.++..+.+-|
T Consensus 72 ~~~~~~~~~~~~~~l~~~p 90 (162)
T 3i4p_A 72 ASHSIEWLKRFSEVVSEFP 90 (162)
T ss_dssp CSCCHHHHHHHHHHHHHCT
T ss_pred cCCChHHHHHHHHHHhcCC
Confidence 2333456888888876544
No 205
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=61.15 E-value=12 Score=25.51 Aligned_cols=37 Identities=22% Similarity=0.206 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhC---CcccccCCCCeeeCcchHhhHHHHHH
Q 034587 46 AIARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVAG 84 (90)
Q Consensus 46 ~iiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~lD~iA~ 84 (90)
+-+=+.+++||+. .|++.+ + |-.||+.|+.+++.+..
T Consensus 35 ~avS~~i~~LE~~lg~~Lf~R~-~-~~~lT~~G~~l~~~a~~ 74 (303)
T 3isp_A 35 SAVSQRIKSLEQQVGQVLVVRE-K-PCRATTAGIPLLRLAAQ 74 (303)
T ss_dssp HHHHHHHHHHHHHHTSCCEECS-S-SCEECGGGHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEEcC-C-CCeeCchHHHHHHHHHH
Confidence 3455678888875 677776 4 89999999999887643
No 206
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=61.04 E-value=4.6 Score=27.49 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhC---CcccccCCCCeeeCcchHhhHHHHH
Q 034587 47 IARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVA 83 (90)
Q Consensus 47 iiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~lD~iA 83 (90)
-+=..+++||+. .|++.+...|=.||+.|+.+++.+-
T Consensus 34 avS~~i~~LE~~lg~~Lf~R~~~~~~~lT~~G~~l~~~a~ 73 (306)
T 3fzv_A 34 SISTAVKGLEESFGVQLFIRHHAQGVSLTPAGARFYRKAQ 73 (306)
T ss_dssp CHHHHHHHHHHHC-CCCC---------CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCeeEeecCCCCceECHhHHHHHHHHH
Confidence 455678889874 5666642357889999999988754
No 207
>1b9m_A Protein (mode); DNA-binding, gene regulation, winged helix turn helix, molybdate, OB fold, transcription; 1.75A {Escherichia coli} SCOP: a.4.5.8 b.40.6.2 b.40.6.2 PDB: 1b9n_A 1o7l_A 1h9s_A 1h9r_A 1h9s_B
Probab=60.95 E-value=8.8 Score=26.79 Aligned_cols=33 Identities=18% Similarity=0.395 Sum_probs=23.2
Q ss_pred HHHHHHHhC---CcccccCC----CCeeeCcchHhhHHHH
Q 034587 50 HILQQLQNM---NIIDIEPK----GGRRITSSGQRDLDQV 82 (90)
Q Consensus 50 ~~LqqLE~~---glV~k~~~----~GR~lT~~G~~~lD~i 82 (90)
..+++||+. .|++..+. +|..+|+.|+.++...
T Consensus 53 ~~i~~le~~lg~~L~~R~~~~lsg~~~~lt~~g~~l~~~~ 92 (265)
T 1b9m_A 53 DAINEMNQLSEHILVERATGGKGGGGAVLTRYGQRLIQLY 92 (265)
T ss_dssp HHHHHHHHHHTSCCEEECCCC-----EEECHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCeEEecCCCCCCCceEECHHHHHHHHHH
Confidence 336666654 78888764 5899999999988764
No 208
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=60.63 E-value=7.6 Score=25.87 Aligned_cols=36 Identities=14% Similarity=0.260 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhC---CcccccCCCCeeeCcchHhhHHHHH
Q 034587 47 IARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVA 83 (90)
Q Consensus 47 iiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~lD~iA 83 (90)
-+=+.+++||+. .|++.+. .|=.||+.|+.+++.+-
T Consensus 31 avS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~ 69 (291)
T 3szp_A 31 TITRRIQALEDSLNLRLLNRHA-RKLTLTEAGERFYKDCS 69 (291)
T ss_dssp HHHHHHHHHHHHHTCCCEEEET-TEEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCceEeecC-CCcccCHhHHHHHHHHH
Confidence 455678888874 6787775 58899999999987643
No 209
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=60.18 E-value=23 Score=23.96 Aligned_cols=57 Identities=14% Similarity=0.158 Sum_probs=44.1
Q ss_pred hhHHHHHHHHhhc-CCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCc-ccccCCCCeeeCcc
Q 034587 3 ELVTSMARKIYLR-QGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNI-IDIEPKGGRRITSS 74 (90)
Q Consensus 3 ~r~ASi~RklYl~-g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~gl-V~k~~~~GR~lT~~ 74 (90)
.|.-.|+.-|.-+ +++.+..|+..+|- |..-|+.=|+.||+.|+ |...+ +|..+++.
T Consensus 21 ~R~~~Il~~L~~~~~~~s~~eLa~~l~v--------------S~~Ti~rdi~~L~~~G~~I~~~~-~Gy~l~~~ 79 (187)
T 1j5y_A 21 ERLKSIVRILERSKEPVSGAQLAEELSV--------------SRQVIVQDIAYLRSLGYNIVATP-RGYVLAGG 79 (187)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHTS--------------CHHHHHHHHHHHHHHTCCCEEET-TEEECCTT
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHHCc--------------CHHHHHHHHHHHHHCCCeEEEEC-CEEEECCc
Confidence 4566777777654 56999999999964 44688999999999999 87654 67777764
No 210
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=59.30 E-value=8 Score=29.74 Aligned_cols=50 Identities=12% Similarity=0.162 Sum_probs=34.7
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCee
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRR 70 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~ 70 (90)
..++..++-.+.+.+..+.+..|. |..-++..|++|+++|++++.. +||.
T Consensus 300 ~~ll~~l~~~p~~t~~~~~~~~~~--------------S~~TA~r~L~~L~e~GiL~~~~-~gR~ 349 (373)
T 3eqx_A 300 HELVQVIFEQPYCRIQNLVESGLA--------------KRQTASVYLKQLCDIGVLEEVQ-SGKE 349 (373)
T ss_dssp HHHHHHHHHCSEEEHHHHHHTSSS--------------CHHHHHHHHHHHHHTTSCEEC---CCS
T ss_pred HHHHHHHHHCCCccHHHHHHHhCc--------------CHHHHHHHHHHHHHCCcEEEeC-CCCc
Confidence 345666666666777777776543 3457899999999999999875 4553
No 211
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=59.24 E-value=12 Score=28.00 Aligned_cols=45 Identities=11% Similarity=0.054 Sum_probs=38.9
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~ 64 (90)
..|++.|+-++++....|.+..|=. ..-+-.++++|++.|||+..
T Consensus 19 ~~il~~l~~~~~~sr~~la~~~~ls--------------~~tv~~~v~~L~~~g~i~~~ 63 (406)
T 1z6r_A 19 GAVYRLIDQLGPVSRIDLSRLAQLA--------------PASITKIVHEMLEAHLVQEL 63 (406)
T ss_dssp HHHHHHHHSSCSCCHHHHHHHTTCC--------------HHHHHHHHHHHHHHTSEEEC
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCC--------------HHHHHHHHHHHHHCCcEEee
Confidence 4589999999999999999988764 36889999999999999763
No 212
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=59.14 E-value=6.1 Score=29.49 Aligned_cols=43 Identities=14% Similarity=0.172 Sum_probs=37.4
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~ 64 (90)
.|++.|+ ++|+.-..|.+..|=.+ .-+-.++++|++.|+|+..
T Consensus 24 ~il~~l~-~~~~sr~~la~~~gls~--------------~tv~~~v~~L~~~gli~~~ 66 (380)
T 2hoe_A 24 RILKRIM-KSPVSRVELAEELGLTK--------------TTVGEIAKIFLEKGIVVEE 66 (380)
T ss_dssp CSHHHHH-HSCBCHHHHHHHHTCCH--------------HHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHH-cCCcCHHHHHHHHCcCH--------------HHHHHHHHHHHHCCCEEee
Confidence 5889999 99999999999888643 6788999999999999754
No 213
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=58.75 E-value=24 Score=25.42 Aligned_cols=49 Identities=12% Similarity=0.155 Sum_probs=39.5
Q ss_pred hcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchH
Q 034587 14 LRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQ 76 (90)
Q Consensus 14 l~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~ 76 (90)
..+|..+..|+...|-. -..++..|..|..+|+|+...++...+|+.+.
T Consensus 49 ~~~~~t~~ela~~~~~~--------------~~~l~r~L~~L~~~g~~~~~~~g~y~~t~~s~ 97 (360)
T 1tw3_A 49 LAGARTVKALAARTDTR--------------PEALLRLIRHLVAIGLLEEDAPGEFVPTEVGE 97 (360)
T ss_dssp HTTCCBHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEEETTEEEECTTGG
T ss_pred hCCCCCHHHHHHHhCcC--------------HHHHHHHHHHHHHCCCEEecCCCeEEeCHHHH
Confidence 36899999999988752 36799999999999999876555578888654
No 214
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=57.47 E-value=12 Score=25.69 Aligned_cols=37 Identities=22% Similarity=0.232 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhC---CcccccCCCCeeeCcchHhhHHHHH
Q 034587 46 AIARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVA 83 (90)
Q Consensus 46 ~iiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~lD~iA 83 (90)
+-+=+.+++||+. .|++... .|=.||+.|+.+++.+-
T Consensus 31 ~avS~~i~~LE~~lg~~Lf~R~~-r~~~lT~~G~~l~~~a~ 70 (305)
T 3fxq_A 31 PALSAAIQQLEDELKAPLLVRTK-RGVSLTSFGQAFMKHAR 70 (305)
T ss_dssp HHHHHHHHHHHHHHTSCSEEECS-SSEEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCeeEEecC-CCccCCHhHHHHHHHHH
Confidence 3556678899874 6777775 58899999999887643
No 215
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=55.07 E-value=15 Score=26.58 Aligned_cols=50 Identities=8% Similarity=0.056 Sum_probs=39.6
Q ss_pred HHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeC
Q 034587 8 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRIT 72 (90)
Q Consensus 8 i~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT 72 (90)
++=.++.+|+..+..|+...|= +.+.+++.|..|++.|+|++.. +|++.-
T Consensus 169 ~l~~~l~~~~~t~~~la~~~~l--------------~~~~V~~~l~~L~~~~~v~~~~-~~~~~~ 218 (232)
T 2qlz_A 169 ILHYLLLNGRATVEELSDRLNL--------------KEREVREKISEMARFVPVKIIN-DNTVVL 218 (232)
T ss_dssp HHHHHHHSSEEEHHHHHHHHTC--------------CHHHHHHHHHHHTTTSCEEEET-TTEEEE
T ss_pred HHHHHHhcCCCCHHHHHHHhCc--------------CHHHHHHHHHHHHhcCCeEEec-CCeEEe
Confidence 4445677899999999998875 4589999999999999998664 455543
No 216
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=52.61 E-value=48 Score=23.60 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=41.4
Q ss_pred cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhH
Q 034587 15 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDL 79 (90)
Q Consensus 15 ~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~l 79 (90)
.||+.+..|+...|-. -..++.+|..|..+|+++...++.-.+|+.+....
T Consensus 36 ~g~~t~~elA~~~~~~--------------~~~l~rlLr~l~~~gl~~~~~~~~y~~t~~s~~l~ 86 (332)
T 3i53_A 36 AGHRTAAEIASAAGAH--------------ADSLDRLLRHLVAVGLFTRDGQGVYGLTEFGEQLR 86 (332)
T ss_dssp TTCCBHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEECTTSBEEECTTGGGGS
T ss_pred cCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHhCCcEEecCCCeEEcCHhHHHHh
Confidence 5799999999988742 24799999999999999987666678888877653
No 217
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=50.33 E-value=8.8 Score=26.96 Aligned_cols=33 Identities=21% Similarity=0.220 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhCCcccccCCCCeeeCcchHhhHH
Q 034587 47 IARHILQQLQNMNIIDIEPKGGRRITSSGQRDLD 80 (90)
Q Consensus 47 iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD 80 (90)
+-|++-+-|.+.|+|+..+ .||.+|+.|.+.+.
T Consensus 281 l~~~l~~~~i~~~li~~~~-~g~~~~~~~~~~~~ 313 (324)
T 1hqc_A 281 LEEVHEPYLIRQGLLKRTP-RGRVPTELAYRHLG 313 (324)
T ss_dssp HHHHTHHHHHHTTSEEEET-TEEEECHHHHHHTT
T ss_pred HHHHHhHHHHHhcchhcCC-ccceecHHHHHHHh
Confidence 3444444488899998776 69999999998874
No 218
>1i96_V Translation initiation factor IF3; 30S ribosome; HET: WO2; 4.20A {Thermus thermophilus} SCOP: d.68.1.1
Probab=50.20 E-value=8.3 Score=24.54 Aligned_cols=32 Identities=16% Similarity=0.462 Sum_probs=24.9
Q ss_pred ccCchhHHHHHHHHHHhCCcccccCC-CCeeeC
Q 034587 41 CKSSGAIARHILQQLQNMNIIDIEPK-GGRRIT 72 (90)
Q Consensus 41 ~~asg~iiR~~LqqLE~~glV~k~~~-~GR~lT 72 (90)
..-.-.++..+.+.|++.+.||+.|+ .||.++
T Consensus 47 ~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~ 79 (89)
T 1i96_V 47 PELGERILNRVTEDLKDLAVVEMKPEMLGRDMN 79 (89)
T ss_pred HHHHHHHHHHHHHHhhhheEEecCccccCCEEE
Confidence 33345788999999999999998884 677653
No 219
>2h9b_A HTH-type transcriptional regulator BENM; LTTR, transcriptional activator, LYSR-type transcripti regulator; 1.80A {Acinetobacter SP} PDB: 2h99_A 3k1m_A 3k1n_A 3k1p_A 2f7a_A* 2f6p_A 2f78_A 2f6g_A* 2f8d_A 2f97_A*
Probab=49.04 E-value=3.6 Score=28.61 Aligned_cols=35 Identities=11% Similarity=0.114 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhC---CcccccCCCCeeeCcchHhhHHHH
Q 034587 47 IARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQV 82 (90)
Q Consensus 47 iiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~lD~i 82 (90)
-+=..+++||+. .|++.+. .|=.||+.|+.+++.+
T Consensus 31 avS~~I~~LE~~lg~~Lf~R~~-r~~~lT~~G~~l~~~a 68 (312)
T 2h9b_A 31 PLSRQIQNLEEELGIQLLERGS-RPVKTTPEGHFFYQYA 68 (312)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHhCCEeEeeCC-CCceECHHHHHHHHHH
Confidence 344567889887 6777664 5789999999988764
No 220
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=48.89 E-value=28 Score=24.12 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=35.6
Q ss_pred HHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc---CCCCe
Q 034587 8 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE---PKGGR 69 (90)
Q Consensus 8 i~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~---~~~GR 69 (90)
++.-|+.++|+.-..+..+.|-. ...++++|.+.|||+.. +..||
T Consensus 99 tLaiIay~qPiTR~eI~~irGv~-----------------~~~~v~~L~e~glI~e~g~~~~~GR 146 (162)
T 1t6s_A 99 VLAVVAWHQPVTKGEIQQIRGAS-----------------PDYSIDRLLARGLIEVRGRADSPGR 146 (162)
T ss_dssp HHHHHHHHCSEEHHHHHHHHTCC-----------------CCSHHHHHHHTTSEEEEEECSSTTC
T ss_pred HHHHHHHcCCcCHHHHHHHHCCC-----------------HHHHHHHHHHCCCEEEccccCCCCC
Confidence 88899999999999999988864 22467889999999743 23566
No 221
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=48.46 E-value=43 Score=23.74 Aligned_cols=50 Identities=10% Similarity=0.081 Sum_probs=40.1
Q ss_pred cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhh
Q 034587 15 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRD 78 (90)
Q Consensus 15 ~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~ 78 (90)
.+|..+..|+...|-. -..++..|..|..+|+++....+.-.+|+.+...
T Consensus 39 ~~~~t~~ela~~~~~~--------------~~~l~r~Lr~L~~~g~l~~~~~~~y~~t~~s~~l 88 (334)
T 2ip2_A 39 SGIDSDETLAAAVGSD--------------AERIHRLMRLLVAFEIFQGDTRDGYANTPTSHLL 88 (334)
T ss_dssp TTCCSHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEETTTEEEECHHHHTT
T ss_pred CCCCCHHHHHHHhCcC--------------HHHHHHHHHHHHhCCceEecCCCeEecCHHHHHH
Confidence 4899999999988752 2589999999999999987755567888766543
No 222
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=47.24 E-value=3.4 Score=27.43 Aligned_cols=42 Identities=10% Similarity=0.101 Sum_probs=31.6
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccc
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIID 62 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~ 62 (90)
.|+..+--.+.+....|+..||-. ..-+|.+|+.||+.|+|+
T Consensus 17 ~Il~~l~~~~~ls~~eLa~~lgvS--------------r~~vr~al~~L~~~Gli~ 58 (163)
T 2gqq_A 17 NILNELQKDGRISNVELSKRVGLS--------------PTPCLERVRRLERQGFIQ 58 (163)
T ss_dssp HHHHHHHHCSSCCTTGGGTSSSCC--------------TTTSSSTHHHHHHHTSEE
T ss_pred HHHHHHHhCCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHHCCcEE
Confidence 456644445677888888877753 356899999999999997
No 223
>3tvt_B PINS, partner of inscuteable; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster}
Probab=46.51 E-value=3.8 Score=23.78 Aligned_cols=26 Identities=27% Similarity=0.514 Sum_probs=19.0
Q ss_pred ccCchhHHHHHHHHHHhCCcccccCC
Q 034587 41 CKSSGAIARHILQQLQNMNIIDIEPK 66 (90)
Q Consensus 41 ~~asg~iiR~~LqqLE~~glV~k~~~ 66 (90)
.++-|..+|---|.+|.+.||...|+
T Consensus 13 ensqgrmvrvrrqsmeqldlikitpd 38 (50)
T 3tvt_B 13 ENSQGRMVRVRRQDMEQLDLIKITPD 38 (50)
T ss_pred ccccceEEEeeecchhhcCeEEecCC
Confidence 34446677888899999999965553
No 224
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=46.15 E-value=30 Score=26.14 Aligned_cols=45 Identities=11% Similarity=0.048 Sum_probs=39.1
Q ss_pred HHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc
Q 034587 6 TSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64 (90)
Q Consensus 6 ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~ 64 (90)
..|++.|+-++++....|++..|=.+ .-+-.++++|++.|+|+..
T Consensus 42 ~~il~~l~~~~~~sr~ela~~~gls~--------------~tv~~~v~~L~~~gli~~~ 86 (429)
T 1z05_A 42 GRVYKLIDQKGPISRIDLSKESELAP--------------ASITKITRELIDAHLIHET 86 (429)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCH--------------HHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCCH--------------HHHHHHHHHHHHCCCEEec
Confidence 45899999999999999999888743 6889999999999999754
No 225
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=43.36 E-value=37 Score=24.31 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=41.5
Q ss_pred cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHH
Q 034587 15 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLD 80 (90)
Q Consensus 15 ~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD 80 (90)
.+|+.+..|+..-|-. | ..++.+|..|..+|+++... ++..+|+.+...|+
T Consensus 54 ~~~~t~~elA~~~~~~------~--------~~l~rlLr~L~~~gll~~~~-~~y~~t~~s~~~l~ 104 (352)
T 3mcz_A 54 QTGRTPAEVAASFGMV------E--------GKAAILLHALAALGLLTKEG-DAFRNTALTERYLT 104 (352)
T ss_dssp TSCBCHHHHHHHHTCC------H--------HHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHHS
T ss_pred CCCCCHHHHHHHhCcC------h--------HHHHHHHHHHHHCCCeEecC-CeeecCHHHHhhcc
Confidence 4589999999887752 2 35899999999999999875 57899999987663
No 226
>3mz1_A Putative transcriptional regulator; structural genomics, PSI-2, protein structure initiative, MI center for STR uctural genomics, MCSG; 1.88A {Sinorhizobium meliloti}
Probab=42.88 E-value=5.1 Score=26.79 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=0.0
Q ss_pred HHHHHHHHHhC---CcccccCCCCeeeCcchHhhHHHHH
Q 034587 48 ARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQVA 83 (90)
Q Consensus 48 iR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~lD~iA 83 (90)
+=+.+++||+. .|++... .|=.||+.|+.+++.+-
T Consensus 29 vS~~i~~LE~~lg~~Lf~R~~-~~~~lT~~G~~l~~~a~ 66 (300)
T 3mz1_A 29 VTNLIQGLEAHLRTKLLNRTT-RRVLVTPDGALYYERAA 66 (300)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHhCCeeEecCC-CceeeCHhHHHHHHHHH
Confidence 44567888865 5666664 57799999999887653
No 227
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=41.93 E-value=5.4 Score=27.81 Aligned_cols=35 Identities=14% Similarity=0.131 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhC---CcccccCCCCeeeCcchHhhHHHH
Q 034587 47 IARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQV 82 (90)
Q Consensus 47 iiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~lD~i 82 (90)
-+=+.+++||+. .|++... .|=.||+.|+.+++.+
T Consensus 44 avS~~I~~LE~~lg~~Lf~R~~-r~~~lT~~G~~l~~~a 81 (315)
T 1uth_A 44 AVSNSLKRLRTALNDDLFLRTS-KGMEPTPYALHLAEPV 81 (315)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHhCCcceeecC-CCccCCHHHHHHHHHH
Confidence 344567888886 6676664 4778999999988764
No 228
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=41.71 E-value=19 Score=23.19 Aligned_cols=22 Identities=27% Similarity=0.369 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHhCCcccccC
Q 034587 44 SGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~ 65 (90)
+.+-+..+|+.||+.|||+...
T Consensus 64 s~~~V~~~l~~Le~kGlI~~~~ 85 (128)
T 2vn2_A 64 SAAECMEMVRRLLQKGMIAIEE 85 (128)
T ss_dssp CHHHHHHHHHHHHHTTSSEECC
T ss_pred CHHHHHHHHHHHHHCCCEEEEe
Confidence 4467888999999999998754
No 229
>2h98_A HTH-type transcriptional regulator CATM; BENM, LTTR; 1.80A {Acinetobacter SP} PDB: 2h9q_A* 2f7b_A 2f7c_A* 3glb_A* 3m1e_A
Probab=41.25 E-value=5.6 Score=27.93 Aligned_cols=35 Identities=11% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhC---CcccccCCCCeeeCcchHhhHHHH
Q 034587 47 IARHILQQLQNM---NIIDIEPKGGRRITSSGQRDLDQV 82 (90)
Q Consensus 47 iiR~~LqqLE~~---glV~k~~~~GR~lT~~G~~~lD~i 82 (90)
-+=..+++||+. .|++... .|=.||+.|+.+++..
T Consensus 31 avS~~I~~LE~~lG~~Lf~R~~-r~v~lT~~G~~l~~~a 68 (313)
T 2h98_A 31 PLSRQIQKLEEELGIQLFERGF-RPAKVTEAGMFFYQHA 68 (313)
T ss_dssp ---------------------------------------
T ss_pred HHHHHHHHHHHHhCCeeEEcCC-CCeEECHhHHHHHHHH
Confidence 344567888876 6777665 5889999999988764
No 230
>4asn_A TUBR; transcription, tubulin, FTSZ, segregation, partition; 3.50A {Bacillus megaterium}
Probab=40.45 E-value=36 Score=22.14 Aligned_cols=39 Identities=31% Similarity=0.453 Sum_probs=31.5
Q ss_pred CchhHHHHHHHHHHhCCcccccCCCCe----eeCcchHhhHHHH
Q 034587 43 SSGAIARHILQQLQNMNIIDIEPKGGR----RITSSGQRDLDQV 82 (90)
Q Consensus 43 asg~iiR~~LqqLE~~glV~k~~~~GR----~lT~~G~~~lD~i 82 (90)
+|-.-.|+.|..||.+-+|.... ||| .||+-|+..+.+.
T Consensus 46 ~~TA~~RKsL~rLEAi~FI~~V~-G~r~HK~~LT~YG~~A~~qa 88 (101)
T 4asn_A 46 YSTANFRKTLNKLEAIHFIGTVT-GGKEHKLYLTEYGQQAVQQA 88 (101)
T ss_dssp CCSHHHHHHHHHHHHTTCEEEEC-SSSSCEEEECHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHhhhcc-cCccceeehHHhhHHHHHHH
Confidence 34478999999999999997664 555 6999999988664
No 231
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=40.35 E-value=35 Score=25.23 Aligned_cols=78 Identities=12% Similarity=0.221 Sum_probs=45.5
Q ss_pred hhhHHHHHHHHhhcCC--CchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCeeeCc----
Q 034587 2 SELVTSMARKIYLRQG--LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRRITS---- 73 (90)
Q Consensus 2 ~~r~ASi~RklYl~g~--vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR~lT~---- 73 (90)
|+|...+.+.|-=++. +.+..|...|+..|.- .--.=.||+..|+++ .+|.++..+ .+|-...|
T Consensus 6 ~~rl~~~~~~l~~~~~~~~~l~~~~~~~~~aks~-------~s~D~~~~~~~~~~~-~~~~~~~~~ga~gg~~~~~~~~~ 77 (291)
T 1o57_A 6 SGRLVDLTNYLLTHPHELIPLTFFSERYESAKSS-------ISEDLTIIKQTFEQQ-GIGTLLTVPGAAGGVKYIPKMKQ 77 (291)
T ss_dssp HHHHHHHHHHHHTSTTCCBCHHHHHHHTTCCHHH-------HHHHHHHHHHHHHHT-TSEEEEEECSTTCEEEEEECCCH
T ss_pred hHHHHHHHHHHHcCCCceEeHHHHHHHhccchhh-------hhhhHHHHHHHHHhc-CCceEEEecCCCCceEEcccCCH
Confidence 5778888877777777 8999999999986521 000112445444333 444455554 34534333
Q ss_pred -chHhhHHHHHHHhh
Q 034587 74 -SGQRDLDQVAGRIV 87 (90)
Q Consensus 74 -~G~~~lD~iA~~v~ 87 (90)
+.++.|+.+...+.
T Consensus 78 ~~a~~~~~~l~~~l~ 92 (291)
T 1o57_A 78 AEAEEFVQTLGQSLA 92 (291)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 34456777665554
No 232
>2yx5_A UPF0062 protein MJ1593; anti parallel beta sheet, NPPSFA, national project on protei structural and functional analyses; 2.30A {Methanocaldococcus jannaschii}
Probab=39.43 E-value=39 Score=20.49 Aligned_cols=37 Identities=11% Similarity=0.338 Sum_probs=23.5
Q ss_pred HHHHhCCc--ccccCCCCeeeCc--ch------HhhHHHHHHHhhcCC
Q 034587 53 QQLQNMNI--IDIEPKGGRRITS--SG------QRDLDQVAGRIVVAP 90 (90)
Q Consensus 53 qqLE~~gl--V~k~~~~GR~lT~--~G------~~~lD~iA~~v~~~~ 90 (90)
..|..+|+ |+... -|+.++= .+ ...++.+|.+++.+|
T Consensus 24 ~al~~lG~~~v~~Vr-~gk~~~l~~~~~~~~~a~~~v~~~~~~LLaNp 70 (83)
T 2yx5_A 24 RALNFLGFNNVKEVQ-TYKMIDIIMEGENEEKVKEEVEEMCKKLLANP 70 (83)
T ss_dssp HHHHHTTCTTCCCCC-CCEEEEEEEC-CCHHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHcCCCChhhEE-EEEEEEEEecCCCHHHHHHHHHHHHHHhccCC
Confidence 44556777 44443 4666654 33 477999999988766
No 233
>3oon_A Outer membrane protein (TPN50); protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; 1.79A {Borrelia burgdorferi}
Probab=39.02 E-value=21 Score=22.38 Aligned_cols=24 Identities=13% Similarity=0.102 Sum_probs=19.6
Q ss_pred CCeeeCcchHhhHHHHHHHhhcCC
Q 034587 67 GGRRITSSGQRDLDQVAGRIVVAP 90 (90)
Q Consensus 67 ~GR~lT~~G~~~lD~iA~~v~~~~ 90 (90)
+.-.||++++..||++|..+...|
T Consensus 24 ~s~~L~~~~~~~L~~~a~~l~~~~ 47 (123)
T 3oon_A 24 NSFQILQKEYKKIDLIAKLLEKFK 47 (123)
T ss_dssp TSCCBCGGGHHHHHHHHHHHHHSC
T ss_pred CChhcCHHHHHHHHHHHHHHHHCC
Confidence 355899999999999999876543
No 234
>3v32_B Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens} PDB: 3v34_A
Probab=38.16 E-value=34 Score=24.27 Aligned_cols=36 Identities=28% Similarity=0.503 Sum_probs=21.3
Q ss_pred HHHHHHHHhCCcccccCCC---CeeeCcchHhhHHHHHH
Q 034587 49 RHILQQLQNMNIIDIEPKG---GRRITSSGQRDLDQVAG 84 (90)
Q Consensus 49 R~~LqqLE~~glV~k~~~~---GR~lT~~G~~~lD~iA~ 84 (90)
..+|++|+++|+|..+|.+ |.+++.-.=+.+=.+|.
T Consensus 85 ~~~L~~L~~~g~l~~TPs~~~~g~~~~~ydD~~il~~A~ 123 (185)
T 3v32_B 85 QHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAY 123 (185)
T ss_dssp THHHHHHHHTTCEEEECCCC-------CCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEECCCcccCCCcccCccHHHHHHHHH
Confidence 5899999999999988842 44554444333333443
No 235
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A*
Probab=38.03 E-value=46 Score=24.42 Aligned_cols=49 Identities=10% Similarity=0.067 Sum_probs=39.4
Q ss_pred cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCC-eeeCcchHh
Q 034587 15 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGG-RRITSSGQR 77 (90)
Q Consensus 15 ~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~G-R~lT~~G~~ 77 (90)
.+|+.+..|+..-|-. -..++.+|..|..+|+++.++++. ..+|+.+..
T Consensus 69 ~g~~t~~eLA~~~g~~--------------~~~l~rlLr~L~~~g~l~~~~~~~~y~~t~~s~~ 118 (369)
T 3gwz_A 69 EGPRTATALAEATGAH--------------EQTLRRLLRLLATVGVFDDLGHDDLFAQNALSAV 118 (369)
T ss_dssp TSCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSSEECSSTTEEECCHHHHT
T ss_pred CCCCCHHHHHHHHCcC--------------HHHHHHHHHHHHhCCCEEEeCCCceEecCHHHHH
Confidence 5789999999988742 236999999999999999876555 688887765
No 236
>2hqs_H Peptidoglycan-associated lipoprotein; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: d.79.7.1 PDB: 2w8b_C 1oap_A
Probab=36.52 E-value=23 Score=22.38 Aligned_cols=24 Identities=25% Similarity=0.137 Sum_probs=19.3
Q ss_pred CCeeeCcchHhhHHHHHHHhhcCC
Q 034587 67 GGRRITSSGQRDLDQVAGRIVVAP 90 (90)
Q Consensus 67 ~GR~lT~~G~~~lD~iA~~v~~~~ 90 (90)
+.-.||++++..||++|..+...|
T Consensus 13 ~s~~l~~~~~~~L~~ia~~l~~~p 36 (118)
T 2hqs_H 13 DKYDIRSDFAQMLDAHANFLRSNP 36 (118)
T ss_dssp TCCCCCGGGHHHHHHHHHHHHHCT
T ss_pred CCcccCHHHHHHHHHHHHHHHhCC
Confidence 345799999999999998876543
No 237
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=36.21 E-value=40 Score=21.87 Aligned_cols=36 Identities=14% Similarity=0.303 Sum_probs=24.0
Q ss_pred hhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHHH
Q 034587 45 GAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVA 83 (90)
Q Consensus 45 g~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~iA 83 (90)
..-+=.+|++|++.|+|+.. ++.|+=.=...|.++|
T Consensus 183 r~tvsR~l~~L~~~g~I~~~---~~~i~i~d~~~L~~~a 218 (220)
T 3dv8_A 183 REVITRMLRYFQVEGLVKLS---RGKITILDSKRLETLQ 218 (220)
T ss_dssp HHHHHHHHHHHHHTTSEEEE---TTEEEESCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEeC---CCEEEEeCHHHHHHHh
Confidence 45677899999999999865 2344433344455554
No 238
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=35.78 E-value=90 Score=20.28 Aligned_cols=21 Identities=14% Similarity=0.322 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHhCCccccc
Q 034587 44 SGAIARHILQQLQNMNIIDIE 64 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~ 64 (90)
+..-+=.+|++|++.|+|+..
T Consensus 180 sr~tvsR~l~~l~~~g~I~~~ 200 (220)
T 2fmy_A 180 TRQTVSVLLNDFKKMGILERV 200 (220)
T ss_dssp CHHHHHHHHHHHHHTTSEEES
T ss_pred cHHHHHHHHHHHHHCCCEEEc
Confidence 345677899999999999875
No 239
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=35.70 E-value=54 Score=23.03 Aligned_cols=49 Identities=16% Similarity=0.058 Sum_probs=39.2
Q ss_pred cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhh
Q 034587 15 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRD 78 (90)
Q Consensus 15 ~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~ 78 (90)
.+|..+..|+..-|-. -..++..|..|..+|+++..+ +.-.+|+.+...
T Consensus 37 ~~~~t~~ela~~~~~~--------------~~~l~r~L~~L~~~g~l~~~~-~~y~~t~~~~~~ 85 (335)
T 2r3s_A 37 QGIESSQSLAQKCQTS--------------ERGMRMLCDYLVIIGFMTKQA-EGYRLTSDSAMF 85 (335)
T ss_dssp TSEECHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHH
T ss_pred cCCCCHHHHHHHhCCC--------------chHHHHHHHHHHhcCCeEecC-CEEecCHHHHHH
Confidence 3889999999988753 358999999999999998753 577888877433
No 240
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=35.43 E-value=31 Score=20.76 Aligned_cols=33 Identities=27% Similarity=0.507 Sum_probs=26.5
Q ss_pred CCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccc
Q 034587 17 GLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDI 63 (90)
Q Consensus 17 ~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k 63 (90)
-+-|..+++.||=.| .-+=.+|..||+-|+|.-
T Consensus 25 ildI~~~a~kygV~k--------------deV~~~LrrLe~KGLI~l 57 (59)
T 2xvc_A 25 FLDIEHFSKVYGVEK--------------QEVVKLLEALKNKGLIAV 57 (59)
T ss_dssp EEEHHHHHHHHCCCH--------------HHHHHHHHHHHHTTSEEE
T ss_pred EEeHHHHHHHhCCCH--------------HHHHHHHHHHHHCCCeec
Confidence 356788999998765 467789999999999853
No 241
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=34.97 E-value=18 Score=23.08 Aligned_cols=44 Identities=14% Similarity=0.013 Sum_probs=29.8
Q ss_pred HHHHHhhcCC--CchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC
Q 034587 8 MARKIYLRQG--LGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 8 i~RklYl~g~--vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~ 65 (90)
|+..|.-.|. +-...|++.-+=. -.++-.||+.||..+||...+
T Consensus 42 Vy~~I~~aGn~GIw~kdL~~~tnL~--------------~~~vtkiLK~LE~k~lIK~Vk 87 (95)
T 2yu3_A 42 VYQIIEDAGNKGIWSRDVRYKSNLP--------------LTEINKILKNLESKKLIKAVK 87 (95)
T ss_dssp HHHHHHHHTTSCEEHHHHHHHHTCC--------------HHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHhCCCCCCHHHHHHHhCCC--------------HHHHHHHHHHHHhCCCEEEec
Confidence 4444555444 4445777665542 368999999999999998554
No 242
>3td3_A Outer membrane protein OMP38; OMPA-like fold, cell-WALL attachment, peptidoglycan-binding, protein,peptide binding protein; 1.59A {Acinetobacter baumannii} PDB: 3td4_A* 3td5_A*
Probab=34.79 E-value=26 Score=22.02 Aligned_cols=24 Identities=17% Similarity=0.286 Sum_probs=19.5
Q ss_pred CCeeeCcchHhhHHHHHHHhhcCC
Q 034587 67 GGRRITSSGQRDLDQVAGRIVVAP 90 (90)
Q Consensus 67 ~GR~lT~~G~~~lD~iA~~v~~~~ 90 (90)
+.-.||++++..||++|..+...|
T Consensus 21 ~s~~l~~~~~~~L~~~a~~l~~~~ 44 (123)
T 3td3_A 21 NKSNIKDQYKPEIAKVAEKLSEYP 44 (123)
T ss_dssp TCCCCCGGGHHHHHHHHHHHHHST
T ss_pred CChhcCHHHHHHHHHHHHHHHhCC
Confidence 345899999999999998876543
No 243
>1jg5_A GTP cyclohydrolase I feedback regulatory protein; alpha/beta structure, beta sheet, protein binding; 2.60A {Rattus norvegicus} SCOP: d.205.1.1 PDB: 1is8_K* 1is7_K* 1wpl_K*
Probab=34.21 E-value=20 Score=22.91 Aligned_cols=14 Identities=21% Similarity=0.323 Sum_probs=12.1
Q ss_pred HHHHHHHHHhCCcc
Q 034587 48 ARHILQQLQNMNII 61 (90)
Q Consensus 48 iR~~LqqLE~~glV 61 (90)
=|.+|..||++||=
T Consensus 52 Pr~VLnKLE~~G~r 65 (83)
T 1jg5_A 52 PRIVLDKLECRGFR 65 (83)
T ss_dssp HHHHHHHHHHTTCE
T ss_pred hHHHHHHHhccCeE
Confidence 48899999999984
No 244
>2key_A Putative phage integrase; protein structure, PSI, NESG, structural genomics, unknown F protein structure initiative; NMR {Bacteroides fragilis}
Probab=33.67 E-value=23 Score=20.71 Aligned_cols=21 Identities=5% Similarity=0.091 Sum_probs=17.9
Q ss_pred hhHHHHHHHHHHhCCcccccC
Q 034587 45 GAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 45 g~iiR~~LqqLE~~glV~k~~ 65 (90)
=+.+|.+++-+.+.|+++.+|
T Consensus 79 ~~~lr~~~~~a~~~~~i~~nP 99 (112)
T 2key_A 79 LSTIKIYVSAAIKKGYMENDP 99 (112)
T ss_dssp HHHHHHHHHHHHHTTSCCSCH
T ss_pred HHHHHHHHHHHHHCCCcccCC
Confidence 357899999999999998776
No 245
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=33.64 E-value=45 Score=22.80 Aligned_cols=51 Identities=10% Similarity=0.054 Sum_probs=31.1
Q ss_pred HHHHHHhhcCCCchhHHHHHhcCCCC--CCCCCCccccCchhHHHHHHHHHHhCC
Q 034587 7 SMARKIYLRQGLGVGSFRRIYGGSKR--NGSRPPHFCKSSGAIARHILQQLQNMN 59 (90)
Q Consensus 7 Si~RklYl~g~vGV~~Lr~~YGg~kr--rG~~P~h~~~asg~iiR~~LqqLE~~g 59 (90)
.++|++| +..++..|.+.||-.-. ...+.-.-+.+...+...+++.++++|
T Consensus 165 ~l~~~~~--~~~~L~~l~~~~gi~~~~~~~H~Al~Da~~ta~l~~~l~~~~~~~~ 217 (224)
T 2f96_A 165 TLAGLAY--GQTVLAKACQAAGMEFDNREAHSARYDTEKTAELFCGIVNRWKEMG 217 (224)
T ss_dssp HHHHHHH--SCCSHHHHHHHTTCCCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHc--CCCCHHHHHHHcCCCcCCCCCCChHHHHHHHHHHHHHHHHHHHHhC
Confidence 4566665 56689999999976421 112222223445567777777877764
No 246
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=32.74 E-value=50 Score=24.08 Aligned_cols=40 Identities=13% Similarity=0.118 Sum_probs=33.8
Q ss_pred HHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCccccc
Q 034587 8 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIE 64 (90)
Q Consensus 8 i~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~ 64 (90)
++.-|+.++|+.-..+..+.|-. + -.++++|.+.|||+..
T Consensus 105 tLaiIAy~QPITR~eI~~irGv~------~-----------~~~v~~Lle~gLI~e~ 144 (219)
T 2z99_A 105 TLAVVAYRQPVTRARVSAVRGVN------V-----------DAVMRTLLARGLITEV 144 (219)
T ss_dssp HHHHHHHHCSEEHHHHHHHHTSC------C-----------HHHHHHHHHTTSEEEE
T ss_pred HHHHHHHcCCcCHHHHHHHHCCC------H-----------HHHHHHHHHCCCEEEc
Confidence 88999999999999999987763 1 3678999999999754
No 247
>2ife_A Protein (translation initiation factor IF3); gene regulation; NMR {Escherichia coli} SCOP: d.68.1.1
Probab=31.88 E-value=18 Score=23.48 Aligned_cols=28 Identities=21% Similarity=0.490 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHhCCcccccC-C-CCeee
Q 034587 44 SGAIARHILQQLQNMNIIDIEP-K-GGRRI 71 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~-~-~GR~l 71 (90)
.-.++..+.+.|++.+.||+.| + .||.+
T Consensus 61 g~~lL~r~~~~l~d~~~ve~~p~k~eGr~m 90 (100)
T 2ife_A 61 GMEVLNRVKDDLQELAVVESFPTKIEGRQM 90 (100)
T ss_dssp HHHHHHHHHHHHTTTEEESCCCCCCCSSCC
T ss_pred HHHHHHHHHHHhhhheEEecCcccccCceE
Confidence 4456677777777777777666 2 45543
No 248
>1tig_A IF3-C, translation initiation factor 3; IF3 C-terminal domain, ribosome binding factor; 2.00A {Geobacillus stearothermophilus} SCOP: d.68.1.1
Probab=30.88 E-value=9.7 Score=24.43 Aligned_cols=33 Identities=12% Similarity=0.340 Sum_probs=24.9
Q ss_pred cccCchhHHHHHHHHHHhCCcccccCC-CCeeeC
Q 034587 40 FCKSSGAIARHILQQLQNMNIIDIEPK-GGRRIT 72 (90)
Q Consensus 40 ~~~asg~iiR~~LqqLE~~glV~k~~~-~GR~lT 72 (90)
|..-.-.++..+.+.|++.+.||+.|+ .||.++
T Consensus 51 h~e~g~~lL~r~~~~l~d~~~ve~~pk~eGr~m~ 84 (94)
T 1tig_A 51 HKEIGQRVLDRLSEACADIAVVETAPKMDGRNMF 84 (94)
T ss_dssp HHHHHHHHHHHHHHHTTTTEEEEEEEEEETTEEE
T ss_pred CHHHHHHHHHHHHHHhhhhhEEecCccccCCEEE
Confidence 334455788999999999999998874 577543
No 249
>2d48_A Interleukin-4; four helix bundle, cytokine; 1.65A {Homo sapiens} PDB: 1itl_A 1itm_A 2b90_A 1cyl_A 1hik_A 1iar_A 1rcb_A 2b8u_A 2cyk_A 2int_A 3bpl_A* 3bpn_A* 2b8y_A 1hij_A 1hzi_A 2b8z_A 1bbn_A 1bcn_A 1iti_A 2b8x_A ...
Probab=30.72 E-value=19 Score=24.71 Aligned_cols=14 Identities=14% Similarity=0.342 Sum_probs=12.4
Q ss_pred hHHHHHHHHhhcCC
Q 034587 4 LVTSMARKIYLRQG 17 (90)
Q Consensus 4 r~ASi~RklYl~g~ 17 (90)
|||-+||++|.+..
T Consensus 47 rAatvLrq~Y~~H~ 60 (129)
T 2d48_A 47 RAATVLRQFYSHHE 60 (129)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc
Confidence 89999999999854
No 250
>2oxo_A Integrase; DNA-binding protein, four-helix bundle, DNA binding protein; 2.00A {Unidentified phage}
Probab=30.58 E-value=38 Score=18.61 Aligned_cols=28 Identities=7% Similarity=-0.060 Sum_probs=21.2
Q ss_pred cccCchhHHHHHHHHHHhCCcccccCCC
Q 034587 40 FCKSSGAIARHILQQLQNMNIIDIEPKG 67 (90)
Q Consensus 40 ~~~asg~iiR~~LqqLE~~glV~k~~~~ 67 (90)
..+-.-+++|.+++-..+.|+++.+|-.
T Consensus 66 t~~~~~~~l~~~~~~a~~~~~i~~nP~~ 93 (103)
T 2oxo_A 66 SAKLIRSTLSDAFREAIAEGHITTNHVA 93 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCSSCTTC
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCChHh
Confidence 3334456788999999999999988843
No 251
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=30.39 E-value=59 Score=21.32 Aligned_cols=24 Identities=8% Similarity=0.123 Sum_probs=19.5
Q ss_pred cCchhHHHHHHHHHHhCCcccccC
Q 034587 42 KSSGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 42 ~asg~iiR~~LqqLE~~glV~k~~ 65 (90)
..+..-+=.+|++|++.|+|+...
T Consensus 191 g~sr~tvsR~l~~l~~~g~I~~~~ 214 (232)
T 2gau_A 191 NMTVSNAIRTLSTFVSERMLALDG 214 (232)
T ss_dssp TSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCHHHHHHHHHHHHHCCCEeeCC
Confidence 345667788999999999998774
No 252
>2crq_A Mitochondrial translational initiation factor 3; ribosome, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=29.94 E-value=23 Score=23.27 Aligned_cols=39 Identities=10% Similarity=0.194 Sum_probs=23.7
Q ss_pred HHHHHHHHHhCCcccccCCCCeeeC---cchHhhHHHHHHHh
Q 034587 48 ARHILQQLQNMNIIDIEPKGGRRIT---SSGQRDLDQVAGRI 86 (90)
Q Consensus 48 iR~~LqqLE~~glV~k~~~~GR~lT---~~G~~~lD~iA~~v 86 (90)
++++.+=||+=-=|...-..||-++ +.|...||+|+..+
T Consensus 33 ~k~a~kFLe~GdKVKvti~RGRE~~~~~e~g~~lL~r~~~~l 74 (112)
T 2crq_A 33 SKQIQQWIEKKYHVQVTIKRRKDAEQSEEETEEIFNQILQTM 74 (112)
T ss_dssp HHHHHHHHHTTCEEEEEEECCTTCSCCHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCEEEEEEECCccccccHHHHHHHHHHHHHHh
Confidence 4556666665444432222577777 56888888887765
No 253
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora}
Probab=29.87 E-value=46 Score=24.07 Aligned_cols=50 Identities=14% Similarity=0.141 Sum_probs=39.8
Q ss_pred cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhH
Q 034587 15 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDL 79 (90)
Q Consensus 15 ~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~l 79 (90)
.+|+.+..|+..-|-. -..++.+|..|..+|+++. ..+.-.+|+.+....
T Consensus 53 ~g~~t~~elA~~~g~~--------------~~~l~rlLr~l~~~g~l~~-~~~~y~~t~~s~~l~ 102 (348)
T 3lst_A 53 DGPRTPAELAAATGTD--------------ADALRRVLRLLAVRDVVRE-SDGRFALTDKGAALR 102 (348)
T ss_dssp TSCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEE-ETTEEEECTTTGGGS
T ss_pred CCCCCHHHHHHHhCcC--------------HHHHHHHHHHHHhCCCEEe-cCCEEecCHHHHHHh
Confidence 4789999999987653 2479999999999999998 445678998876543
No 254
>3i4u_A ATP-dependent RNA helicase DHX8; splicing, ATP-binding, hydrolase, mRNA processing, splicing, nucleotide-binding, nucleus, phosphoprotein, SPLI; 2.10A {Homo sapiens}
Probab=29.61 E-value=28 Score=25.45 Aligned_cols=30 Identities=27% Similarity=0.314 Sum_probs=23.8
Q ss_pred hhHHHHHHHHHHhCCcccccCCCCeeeCcchHhh
Q 034587 45 GAIARHILQQLQNMNIIDIEPKGGRRITSSGQRD 78 (90)
Q Consensus 45 g~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~ 78 (90)
-.-+..+++.|..+|.++.+ | .||+-|+..
T Consensus 17 ~~~l~~A~~~L~~LgAld~~---g-~lT~lG~~m 46 (270)
T 3i4u_A 17 METLITAMEQLYTLGALDDE---G-LLTRLGRRM 46 (270)
T ss_dssp HHHHHHHHHHHHHHTSBCTT---S-CBCHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcCCC---C-CccHHHHHH
Confidence 34677899999999999643 3 699999864
No 255
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=28.15 E-value=44 Score=21.54 Aligned_cols=37 Identities=14% Similarity=0.266 Sum_probs=23.7
Q ss_pred hhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHHHH
Q 034587 45 GAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 84 (90)
Q Consensus 45 g~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~iA~ 84 (90)
..-+=.+|++|++.|+|+... +.|+=.=...|-++|.
T Consensus 177 r~tvsR~l~~l~~~g~I~~~~---~~i~i~d~~~L~~~a~ 213 (216)
T 4ev0_A 177 RETVSRVLHALAEEGVVRLGP---GTVEVREAALLEEIAF 213 (216)
T ss_dssp HHHHHHHHHHHHHTTSEEEET---TEEEESCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCCCEEecC---CEEEEeCHHHHHHHhh
Confidence 356778899999999998763 2343333344444443
No 256
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=27.96 E-value=12 Score=22.15 Aligned_cols=17 Identities=29% Similarity=0.435 Sum_probs=15.0
Q ss_pred hHHHHHHHHHHhCCccc
Q 034587 46 AIARHILQQLQNMNIID 62 (90)
Q Consensus 46 ~iiR~~LqqLE~~glV~ 62 (90)
.+.|.-||+|.++|+=+
T Consensus 7 ~vn~qmlq~L~eMGFd~ 23 (54)
T 2cos_A 7 GVNRQMLQELVNAGCDQ 23 (54)
T ss_dssp SCCHHHHHHHHHHHCCH
T ss_pred hhHHHHHHHHHHcCCCH
Confidence 68899999999999854
No 257
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=27.75 E-value=38 Score=21.80 Aligned_cols=22 Identities=27% Similarity=0.377 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHHhCCcccccC
Q 034587 44 SGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~ 65 (90)
+..-+=.+|++|++.|+|+...
T Consensus 180 sr~tvsR~l~~L~~~g~I~~~~ 201 (210)
T 3ryp_A 180 SRETVGRILKMLEDQNLISAHG 201 (210)
T ss_dssp CHHHHHHHHHHHHHTTSEEEET
T ss_pred cHHHHHHHHHHHHHCCcEEeCC
Confidence 4467778999999999998763
No 258
>3cyp_B Chemotaxis protein MOTB; bacterial flagellar motor, peptidoglycan binding, bacterial flagellum, flagellar rotation, inner membrane, membrane; 1.60A {Helicobacter pylori} PDB: 3cyq_B* 3imp_B
Probab=27.53 E-value=33 Score=22.25 Aligned_cols=22 Identities=18% Similarity=0.175 Sum_probs=18.1
Q ss_pred ee-eCcchHhhHHHHHHHhhcCC
Q 034587 69 RR-ITSSGQRDLDQVAGRIVVAP 90 (90)
Q Consensus 69 R~-lT~~G~~~lD~iA~~v~~~~ 90 (90)
-. ||+.++..||++|..+...|
T Consensus 12 ~~~l~~~~~~~L~~ia~~l~~~p 34 (138)
T 3cyp_B 12 SDAINQDMMLYIERIAKIIQKLP 34 (138)
T ss_dssp CCCCCHHHHHHHHHHHHHHTTSC
T ss_pred cccCCHHHHHHHHHHHHHHHhCC
Confidence 35 99999999999998876543
No 259
>2kgw_A Outer membrane protein A; OMPA-L membrane, transmembrane; NMR {Mycobacterium tuberculosis} PDB: 2lca_A 2lbt_A
Probab=27.30 E-value=34 Score=21.75 Aligned_cols=39 Identities=13% Similarity=0.220 Sum_probs=26.2
Q ss_pred HHHHHHHHhCCcccccCCCCeeeCcchHhhHHHHHHHhhcC
Q 034587 49 RHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAGRIVVA 89 (90)
Q Consensus 49 R~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~iA~~v~~~ 89 (90)
...+.++... -|-... +.-.||++++..||++|..+...
T Consensus 15 ~~~~~~~~~~-~i~F~~-~s~~l~~~~~~~L~~ia~~l~~~ 53 (129)
T 2kgw_A 15 QSAINAVTGG-PIAFGN-DGASLIPADYEILNRVADKLKAC 53 (129)
T ss_dssp HHHHHHHHTS-CBCCCT-TSSCCCHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhcCC-ceEeCC-CCcccCHHHHHHHHHHHHHHHhC
Confidence 3345555544 333443 35589999999999999887654
No 260
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine biosynthesis, transcription regulation; 1.80A {Klebsiella aerogenes} SCOP: c.94.1.1
Probab=27.24 E-value=13 Score=25.90 Aligned_cols=36 Identities=14% Similarity=0.122 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhC---CcccccCCCCe-eeCcchHhhHHHHH
Q 034587 47 IARHILQQLQNM---NIIDIEPKGGR-RITSSGQRDLDQVA 83 (90)
Q Consensus 47 iiR~~LqqLE~~---glV~k~~~~GR-~lT~~G~~~lD~iA 83 (90)
-+=+.+++||+. .|++.+. .|= .||+.|+.+++.+.
T Consensus 32 avS~~I~~LE~~lg~~Lf~R~~-r~~~~lT~~G~~l~~~a~ 71 (324)
T 1al3_A 32 GISKQVRMLEDELGIQIFARSG-KHLTQVTPAGQEIIRIAR 71 (324)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHHHHhCCEEEEECC-CCcceeCHhHHHHHHHHH
Confidence 344567888885 5666553 344 59999999887643
No 261
>2kd1_A DNA integration/recombination/invertion protein; protein structure initiative, structural genomics, unknown function, PSI-2; HET: DNA; NMR {Bacillus cereus atcc 14579}
Probab=27.23 E-value=31 Score=20.20 Aligned_cols=27 Identities=11% Similarity=0.169 Sum_probs=20.8
Q ss_pred cCchhHHHHHHHHHHhCCcccccCCCC
Q 034587 42 KSSGAIARHILQQLQNMNIIDIEPKGG 68 (90)
Q Consensus 42 ~asg~iiR~~LqqLE~~glV~k~~~~G 68 (90)
+-.-+++|.+++-+.+.|+++.+|-.+
T Consensus 74 ~~~~~~l~~~~~~a~~~~~i~~nP~~~ 100 (118)
T 2kd1_A 74 EKIIKVIRNSLEHAIDLELITKNVAAK 100 (118)
T ss_dssp HHHHHHHHHHHHHHHHTTSCSSCTTTT
T ss_pred HHHHHHHHHHHHHHHHcCCcccCcccc
Confidence 334468888999999999999888544
No 262
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=26.93 E-value=1.4e+02 Score=23.11 Aligned_cols=66 Identities=15% Similarity=0.188 Sum_probs=45.1
Q ss_pred cCCCchhHHHHHhcCCCCCCCC-------CCc--cccCchhHHHHHHHHHHhCCcccccCC--CCeeeCcchHhhHH
Q 034587 15 RQGLGVGSFRRIYGGSKRNGSR-------PPH--FCKSSGAIARHILQQLQNMNIIDIEPK--GGRRITSSGQRDLD 80 (90)
Q Consensus 15 ~g~vGV~~Lr~~YGg~krrG~~-------P~h--~~~asg~iiR~~LqqLE~~glV~k~~~--~GR~lT~~G~~~lD 80 (90)
.+..|.+.+...+-|+++.... |.+ +..=+..-.+.++.+|...|+++.+.+ +.=.||++|...|.
T Consensus 427 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 503 (523)
T 1oyw_A 427 NQRFGMGYVVEVIRGANNQRIRDYGHDKLKVYGMGRDKSHEHWVSVIRQLIHLGLVTQNIAQHSALQLTEAARPVLR 503 (523)
T ss_dssp TTCCCHHHHHHHHHTCCCHHHHHHTGGGSTTTTTTTTSCHHHHHHHHHHHHHTTSEEEEGGGTTEEEECGGGHHHHH
T ss_pred ccCcCcchhHHHhcCCCcHhHHhhcccccccccccCCCCHHHHHHHHHHHHHCCCceeccCCCCceeeCHHHHHHhc
Confidence 4678888888777776543321 111 233455678999999999999976532 33468999998775
No 263
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=26.67 E-value=40 Score=21.59 Aligned_cols=21 Identities=14% Similarity=0.458 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHhCCccccc
Q 034587 44 SGAIARHILQQLQNMNIIDIE 64 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~ 64 (90)
+..-+=.+|++|++.|+|+..
T Consensus 177 sr~tvsR~l~~l~~~g~I~~~ 197 (207)
T 2oz6_A 177 SREMVGRVLKSLEEQGLVHVK 197 (207)
T ss_dssp CHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHHCCCEEec
Confidence 345677799999999999876
No 264
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=26.27 E-value=56 Score=25.99 Aligned_cols=61 Identities=8% Similarity=0.024 Sum_probs=45.1
Q ss_pred hHHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCC
Q 034587 4 LVTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPK 66 (90)
Q Consensus 4 r~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~ 66 (90)
-||.|+=.|...|.+-++.+-..+-.+- +..+......+-.-++.+|.+|-+.+||+..+.
T Consensus 102 ~a~~I~~~ll~~G~~t~~~ll~~~~~~~--~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~rv~~ 162 (534)
T 2xub_A 102 TGELIVEELLLNGKLTMSAVVKKVADRL--TETMEDGKTMDYAEVSNTFVRLADTHFVQRCPS 162 (534)
T ss_dssp HHHHHHHHHHHHCCBCHHHHHHHHHHHH--HHTSSSSCCCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHHHHHHHcCCccHHHHHHHHHhhc--ccccccccccCHHHHHHHHHHHHhCCCEEeCCC
Confidence 4788999999999999988877665321 111223334467789999999999999997763
No 265
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=25.98 E-value=42 Score=21.91 Aligned_cols=22 Identities=23% Similarity=0.359 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHhCCcccccC
Q 034587 44 SGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~ 65 (90)
+..-+=.+|++|++.|+|+...
T Consensus 200 sr~tvsR~l~~L~~~g~I~~~~ 221 (230)
T 3iwz_A 200 SREMAGRVLKKLQADGLLHARG 221 (230)
T ss_dssp CHHHHHHHHHHHHHTTSEEEET
T ss_pred cHHHHHHHHHHHHHCCCEEECC
Confidence 4466778999999999998763
No 266
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=25.52 E-value=71 Score=23.30 Aligned_cols=57 Identities=16% Similarity=0.119 Sum_probs=42.7
Q ss_pred HHHHHhh-cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhH
Q 034587 8 MARKIYL-RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDL 79 (90)
Q Consensus 8 i~RklYl-~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~l 79 (90)
|+-.|-- .+|+.+..|+..-|-. -..+|.+|..|..+|+++.++ +.-.+|+.+.-..
T Consensus 40 ifd~L~~~~~~~t~~eLA~~~g~~--------------~~~l~rlLr~l~~~g~l~~~~-~~y~~t~~s~~L~ 97 (363)
T 3dp7_A 40 IFQLLSGKREGYTLQEISGRTGLT--------------RYAAQVLLEASLTIGTILLEE-DRYVLAKAGWFLL 97 (363)
T ss_dssp HHHHHHTCTTCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHHTSEEEET-TEEEECHHHHHHH
T ss_pred HHHHHHhcCCCCCHHHHHHHhCcC--------------HHHHHHHHHHHhhCCCeEecC-CEEecccchHHhh
Confidence 3444444 3789999999877642 235999999999999998863 5679999985443
No 267
>2aiz_P Outer membrane protein P6; alpha-beta sandwich; HET: UDP AMU DGL 6CL DAL; NMR {Haemophilus influenzae} SCOP: d.79.7.1
Probab=25.33 E-value=37 Score=22.04 Aligned_cols=23 Identities=26% Similarity=0.185 Sum_probs=19.1
Q ss_pred CeeeCcchHhhHHHHHHHhhcCC
Q 034587 68 GRRITSSGQRDLDQVAGRIVVAP 90 (90)
Q Consensus 68 GR~lT~~G~~~lD~iA~~v~~~~ 90 (90)
.-.||++++..||++|..+...|
T Consensus 38 sa~L~~~~~~~L~~ia~~L~~~p 60 (134)
T 2aiz_P 38 KYDITGEYVQILDAHAAYLNATP 60 (134)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHST
T ss_pred CceeCHHHHHHHHHHHHHHHHCC
Confidence 45799999999999998876543
No 268
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=25.17 E-value=1.1e+02 Score=22.06 Aligned_cols=50 Identities=16% Similarity=0.230 Sum_probs=39.5
Q ss_pred cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhH
Q 034587 15 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDL 79 (90)
Q Consensus 15 ~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~l 79 (90)
.+|..+..|+..-|-. -..++.+|..|..+|+++..+ +.-.+|+.....|
T Consensus 62 ~~~~t~~eLA~~~g~~--------------~~~l~rlLr~L~~~gll~~~~-~~y~~t~~~~~~l 111 (359)
T 1x19_A 62 EGPKDLATLAADTGSV--------------PPRLEMLLETLRQMRVINLED-GKWSLTEFADYMF 111 (359)
T ss_dssp TCCBCHHHHHHHHTCC--------------HHHHHHHHHHHHHTTSEEEET-TEEEECHHHHHHS
T ss_pred CCCCCHHHHHHHhCcC--------------hHHHHHHHHHHHhCCCeEeeC-CeEecCHHHHHHh
Confidence 3899999999987753 358999999999999998875 5778887644433
No 269
>2wvl_A Mannosyl-3-phosphoglycerate synthase; GT-A fold, transferase, glycosyltransferase, retaining mecha glucosyl transferase; HET: GDD; 2.81A {Thermus thermophilus} PDB: 2wvk_A* 2wvm_A*
Probab=24.82 E-value=1.8e+02 Score=23.13 Aligned_cols=56 Identities=14% Similarity=0.183 Sum_probs=45.2
Q ss_pred hHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC--CCCeeeCcchHhhHHHHHHHhh
Q 034587 21 GSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP--KGGRRITSSGQRDLDQVAGRIV 87 (90)
Q Consensus 21 ~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~--~~GR~lT~~G~~~lD~iA~~v~ 87 (90)
..|..+| |..-+.-.+=+.+|++|...+.++..+ ..-+...|-..-|+|.++.-+-
T Consensus 325 ~sL~~Iy-----------hs~l~~~~lk~~i~~~l~~~~~~~~~~~p~~~~~~pp~~~~d~~~f~~~~~ 382 (391)
T 2wvl_A 325 ACLATVY-----------HSKLATEEVRQSVLEELQAAGALAPGEEPPPPVLYPPLSSLDLQAVRKALR 382 (391)
T ss_dssp HHHHHHH-----------TCTTCCHHHHHHHHHHHHTTSSCSSCCCCCCCCEECCGGGSCHHHHHHHTT
T ss_pred Hhhhhee-----------ecccCCHHHHHHHHHHHHhcccccccCCCCCCcccCChhhCCHHHHHHHHH
Confidence 4566777 555778888999999999999997444 4688999999999999987654
No 270
>2kob_A Uncharacterized protein; alpha beta, structural genomics, PSI-2, protein structure initiative; NMR {Clostridium leptum dsm 753}
Probab=24.09 E-value=48 Score=18.84 Aligned_cols=24 Identities=21% Similarity=0.274 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHHhCCcccccCC
Q 034587 43 SSGAIARHILQQLQNMNIIDIEPK 66 (90)
Q Consensus 43 asg~iiR~~LqqLE~~glV~k~~~ 66 (90)
-.-+++|.++.-..+.|+++.+|-
T Consensus 68 ~~~~~l~~~~~~A~~~~~i~~NP~ 91 (108)
T 2kob_A 68 AIRNTASQIFRLAIENRAIDFNPA 91 (108)
T ss_dssp HHHHHHHHHHHHHHHTTSSSSCGG
T ss_pred HHHHHHHHHHHHHHHcCCcccCcc
Confidence 334678888888899999998884
No 271
>3nrw_A Phage integrase/site-specific recombinase; alpha-helical domain, structural genomics, PSI-2, protein ST initiative; 1.70A {Haloarcula marismortui}
Probab=23.90 E-value=56 Score=19.56 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=29.0
Q ss_pred chhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC
Q 034587 19 GVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 19 GV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~ 65 (90)
....++......+.+|..|+ ..+.-=+.+|..++-|.+.|+|+.+|
T Consensus 55 t~~~i~~y~~~l~~~~~s~~-Ti~~~ls~lr~f~~~l~~~g~i~~nP 100 (117)
T 3nrw_A 55 TGWKLDEYETFRRGSDVSPA-TLNGEMQTLKNWLEYLARIDVVDEDL 100 (117)
T ss_dssp CHHHHHHHHHHHHTSSCCHH-HHHHHHHHHHHHHHHHHHTTSSCTTS
T ss_pred CHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHHHHHHHHcCCcccCH
Confidence 33444444433333455543 22333468899999999999999888
No 272
>3lcz_A YCZA, inhibitor of trap, regulated by T-box (Trp) seque; anti-trap, tryptophan RNA-binding attenuation PROT transcription attenuation; 2.06A {Bacillus licheniformis} PDB: 3ld0_A
Probab=23.82 E-value=22 Score=20.33 Aligned_cols=39 Identities=18% Similarity=0.103 Sum_probs=25.8
Q ss_pred CCccccCchhHHHHHHHHHHhCCcccccCCCCeeeCcchHhhHHHHHH
Q 034587 37 PPHFCKSSGAIARHILQQLQNMNIIDIEPKGGRRITSSGQRDLDQVAG 84 (90)
Q Consensus 37 P~h~~~asg~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~lD~iA~ 84 (90)
|-..+.++|++|. .--......|++...+|+..+|.|-.
T Consensus 11 ~C~~C~GsG~~i~---------~~C~~C~G~G~v~~~~G~~~~~~~~~ 49 (53)
T 3lcz_A 11 TCPNCNGSGREEP---------EPCPKCLGKGVILTAQGSTLLHFIKK 49 (53)
T ss_dssp ECTTTTTSCEETT---------EECTTTTTSSEEECHHHHHHHHHHHH
T ss_pred cCcCCcccccCCC---------CcCCCCCCcEEEEEEeCchHHHHHHH
Confidence 3456677777763 11122224689999999999998754
No 273
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=23.77 E-value=79 Score=21.14 Aligned_cols=22 Identities=23% Similarity=0.351 Sum_probs=18.1
Q ss_pred chhHHHHHHHHHHhCCcccccC
Q 034587 44 SGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~ 65 (90)
+..-+=.+|++|++.|+|+...
T Consensus 190 sr~tvsR~l~~L~~~g~I~~~~ 211 (250)
T 3e6c_C 190 HHVTVSRVLASLKRENILDKKK 211 (250)
T ss_dssp CHHHHHHHHHHHHHTTSEEECS
T ss_pred cHHHHHHHHHHHHHCCCeEeCC
Confidence 4567778999999999998763
No 274
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=23.77 E-value=77 Score=21.39 Aligned_cols=44 Identities=5% Similarity=0.131 Sum_probs=33.4
Q ss_pred HHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC
Q 034587 8 MARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 8 i~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~ 65 (90)
|+..| ..+|..|..|....|.- +.+-+-+=|+.|+++|||+..+
T Consensus 28 il~~L-~~~~~~~~~l~~~l~~~-------------~~~~~s~Hl~~L~~aglv~~~~ 71 (182)
T 4g6q_A 28 ITQLL-IGRSLTTRELAELLPDV-------------ATTTLYRQVGILVKAGVLMVTA 71 (182)
T ss_dssp HHHHT-TTSCEEHHHHHHHCTTB-------------CHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHH-HhCCCCHHHHHHHhcCC-------------CHHHHHHHHHHHHHCCCeEEEE
Confidence 66666 37899999999987641 3356667789999999998554
No 275
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=23.65 E-value=43 Score=20.93 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=15.3
Q ss_pred HHHHHHHhCCcccccCCCC
Q 034587 50 HILQQLQNMNIIDIEPKGG 68 (90)
Q Consensus 50 ~~LqqLE~~glV~k~~~~G 68 (90)
.-+|.||.+|.+.-.|+.|
T Consensus 36 ~~vqaL~~ag~ip~AP~DG 54 (74)
T 1avy_A 36 GDVQALQEAGYIPEAPRDG 54 (74)
T ss_dssp HHHHHHHHTCCCCCCCCSS
T ss_pred hhhHHHHhcCCCCCCCCCC
Confidence 3479999999998888655
No 276
>2kkv_A Integrase; protein structure, PSI, nesgc, structural genomics, protein initiative, northeast structural genomics consortium; NMR {Salmonella enterica subsp}
Probab=23.53 E-value=58 Score=19.24 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=19.1
Q ss_pred CchhHHHHHHHHHHhCCcccccCC
Q 034587 43 SSGAIARHILQQLQNMNIIDIEPK 66 (90)
Q Consensus 43 asg~iiR~~LqqLE~~glV~k~~~ 66 (90)
---+++|.+++-..+.|+++.+|-
T Consensus 74 ~~~~~l~~~~~~A~~~~~i~~NP~ 97 (121)
T 2kkv_A 74 RLQQRVTAIMRYAVQNDYIDSNPA 97 (121)
T ss_dssp HHHHHHHHHHHHHHHTTSSCSCSC
T ss_pred HHHHHHHHHHHHHHHcCCcccCcH
Confidence 344578888888899999998883
No 277
>1whz_A Hypothetical protein; alpha and beta protein, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; 1.52A {Thermus thermophilus} SCOP: d.50.3.2
Probab=23.50 E-value=44 Score=19.22 Aligned_cols=16 Identities=6% Similarity=0.405 Sum_probs=13.0
Q ss_pred HHHHHHHHHhCCcccc
Q 034587 48 ARHILQQLQNMNIIDI 63 (90)
Q Consensus 48 iR~~LqqLE~~glV~k 63 (90)
.|.+++.||+.||...
T Consensus 7 ~~elik~L~~~G~~~~ 22 (70)
T 1whz_A 7 PEEVARKLRRLGFVER 22 (70)
T ss_dssp HHHHHHHHHHTTCEEE
T ss_pred HHHHHHHHHHCCCEEe
Confidence 3678889999999864
No 278
>2k1s_A Inner membrane lipoprotein YIAD; abbababab, OMPA, alpha beta, ME palmitate, transmembrane, structural genomics, PSI-2; NMR {Escherichia coli}
Probab=23.34 E-value=43 Score=21.89 Aligned_cols=23 Identities=22% Similarity=0.271 Sum_probs=18.7
Q ss_pred CeeeCcchHhhHHHHHHHhhcCC
Q 034587 68 GRRITSSGQRDLDQVAGRIVVAP 90 (90)
Q Consensus 68 GR~lT~~G~~~lD~iA~~v~~~~ 90 (90)
.-.||++++..||++|..+...|
T Consensus 42 s~~L~~~~~~~L~~ia~~L~~~~ 64 (149)
T 2k1s_A 42 SATLKPAGANTLTGVAMVLKEYP 64 (149)
T ss_dssp SSCBCHHHHHHHHHHHHHHHHCT
T ss_pred CccCCHHHHHHHHHHHHHHHhCC
Confidence 45799999999999998875543
No 279
>3lys_A Prophage PI2 protein 01, integrase; helical N-terminal domain, structural genomics, PSI-2, protein structure initiative; 2.80A {Lactococcus lactis}
Probab=23.30 E-value=59 Score=19.12 Aligned_cols=22 Identities=14% Similarity=0.028 Sum_probs=18.8
Q ss_pred hhHHHHHHHHHHhCCcccccCC
Q 034587 45 GAIARHILQQLQNMNIIDIEPK 66 (90)
Q Consensus 45 g~iiR~~LqqLE~~glV~k~~~ 66 (90)
-++++.+|+...+.|+|+.+|-
T Consensus 76 ~~~l~~i~~~Av~~g~i~~NP~ 97 (112)
T 3lys_A 76 HTRVRASIQCLIEEGRLQKDFT 97 (112)
T ss_dssp HHHHHHHHHHHHHTTSCSSCTT
T ss_pred HHHHHHHHHHHHHCCCcccCcc
Confidence 4678889999999999999884
No 280
>3v33_A Ribonuclease ZC3H12A; rossmann-like sandwich fold, RNAse, cytoplastic, hydrolase; 2.00A {Homo sapiens}
Probab=22.96 E-value=61 Score=23.73 Aligned_cols=37 Identities=30% Similarity=0.561 Sum_probs=25.3
Q ss_pred HHHHHHHHhCCcccccCC---CCeeeCcchHhhHHHHHHH
Q 034587 49 RHILQQLQNMNIIDIEPK---GGRRITSSGQRDLDQVAGR 85 (90)
Q Consensus 49 R~~LqqLE~~glV~k~~~---~GR~lT~~G~~~lD~iA~~ 85 (90)
..+|++|++.|+|..+|. .|.++++-.=.++=.+|.+
T Consensus 85 ~~~L~~L~k~g~L~~TPs~~v~G~r~~sydD~~iL~~A~~ 124 (223)
T 3v33_A 85 QHILRELEKKKILVFTPSRRVGGKRVVCYDDRFIVKLAYE 124 (223)
T ss_dssp THHHHHHHHTTCEEEECEEEETTEEEECCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCEEECCCCCcCCccccccchHHHHHHHHH
Confidence 579999999999998874 3556655544444444443
No 281
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=22.53 E-value=83 Score=20.22 Aligned_cols=22 Identities=9% Similarity=0.068 Sum_probs=17.7
Q ss_pred chhHHHHHHHHHHhCCcccccC
Q 034587 44 SGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~ 65 (90)
+..-+=.+|++|++.|+|+...
T Consensus 159 sr~tvsR~l~~L~~~g~I~~~~ 180 (202)
T 2zcw_A 159 VRETVTKVIGELAREGYIRSGY 180 (202)
T ss_dssp CHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHHHHHHCCCEEeCC
Confidence 4456777999999999998763
No 282
>2kiw_A INT protein; alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus haemolyticus JCSC1435}
Probab=22.41 E-value=56 Score=18.78 Aligned_cols=24 Identities=17% Similarity=0.159 Sum_probs=19.4
Q ss_pred chhHHHHHHHHHHhCCcccccCCC
Q 034587 44 SGAIARHILQQLQNMNIIDIEPKG 67 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~~~ 67 (90)
.-+++|.+++-..+.|+++.+|-.
T Consensus 68 ~~~~lr~~~~~A~~~~~i~~nP~~ 91 (111)
T 2kiw_A 68 IVASTNMIFKYAYDTRLIKAMPSE 91 (111)
T ss_dssp HHHHHHHHHHHHHHTTSCSCCTTT
T ss_pred HHHHHHHHHHHHHHhCChhhCccc
Confidence 346788889989999999988843
No 283
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=22.33 E-value=64 Score=25.75 Aligned_cols=32 Identities=16% Similarity=0.098 Sum_probs=26.2
Q ss_pred hhHHHHHHHHHHhCCcccccCCCCeeeCcchHhh
Q 034587 45 GAIARHILQQLQNMNIIDIEPKGGRRITSSGQRD 78 (90)
Q Consensus 45 g~iiR~~LqqLE~~glV~k~~~~GR~lT~~G~~~ 78 (90)
...+..+|+.|++.|+|+.+ +.-.+|+-|+..
T Consensus 452 ~~~~~~al~~L~~~g~i~~~--~~~~~t~lG~~~ 483 (702)
T 2p6r_A 452 SYELERVVRQLENWGMVVEA--AHLAPTKLGSLV 483 (702)
T ss_dssp HHHHHHHHHHHHHTTSEEES--SSEEECHHHHHH
T ss_pred HHHHHHHHHHHHHCcCeeEC--CeeccChHHHHH
Confidence 46889999999999999866 345899988764
No 284
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=22.17 E-value=59 Score=20.03 Aligned_cols=37 Identities=5% Similarity=0.124 Sum_probs=24.3
Q ss_pred cCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC
Q 034587 15 RQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 15 ~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~ 65 (90)
.+...++.|.+.|.---|| .=.++.|||+.|+|.-..
T Consensus 22 ~~~aS~S~lQR~lrIGYnR--------------AArlid~lE~~GiVgp~~ 58 (73)
T 2ve8_A 22 SRRASISAVQRKLKIGYNR--------------AARMIEAMEMAGVVTPMN 58 (73)
T ss_dssp HCCCCHHHHHHHHTCCHHH--------------HHHHHHHHHHTTSBCCCC
T ss_pred cCCccHHHHHHHHccChHH--------------HHHHHHHHHHCCcCCccc
Confidence 4666777777755442221 235889999999996443
No 285
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=22.08 E-value=52 Score=26.23 Aligned_cols=30 Identities=20% Similarity=0.172 Sum_probs=24.6
Q ss_pred HHHHHHHHHhCCcccccCCCCeeeCcchHhh
Q 034587 48 ARHILQQLQNMNIIDIEPKGGRRITSSGQRD 78 (90)
Q Consensus 48 iR~~LqqLE~~glV~k~~~~GR~lT~~G~~~ 78 (90)
+..+++.|+++|+|+.+. +.-.+|+-|+..
T Consensus 473 ~~~al~~L~~~g~i~~~~-~~~~~t~lG~~~ 502 (715)
T 2va8_A 473 FDRAIRWLLEHSFIKEEG-NTFALTNFGKRV 502 (715)
T ss_dssp HHHHHHHHHHTTSEEECS-SEEEECHHHHHH
T ss_pred HHHHHHHHHHCcCEeecC-CeEeeChHHHHH
Confidence 889999999999998653 345889988764
No 286
>2kj8_A Putative prophage CPS-53 integrase; INTS, INTC, YFDB, DNA integration, DNA recombination, structural genomics, protein structure initiative; NMR {Escherichia coli k-12}
Probab=21.71 E-value=66 Score=19.00 Aligned_cols=22 Identities=5% Similarity=0.025 Sum_probs=18.0
Q ss_pred chhHHHHHHHHHHhCCcccccC
Q 034587 44 SGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~ 65 (90)
--+++|.+|+-..+.|+++.+|
T Consensus 74 ~~~~l~~~~~~Av~~~~i~~NP 95 (118)
T 2kj8_A 74 ARRRCGEVFRYAIVTGRAKYNP 95 (118)
T ss_dssp HHHHHHHHHHHHHHTTSCSCCS
T ss_pred HHHHHHHHHHHHHHcCCcccCc
Confidence 3457888888888999998887
No 287
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=21.62 E-value=73 Score=20.61 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhCCcccccC---C------CCeeeCcchHhhHHH
Q 034587 46 AIARHILQQLQNMNIIDIEP---K------GGRRITSSGQRDLDQ 81 (90)
Q Consensus 46 ~iiR~~LqqLE~~glV~k~~---~------~GR~lT~~G~~~lD~ 81 (90)
.-.-.+++.|.+.|+|+-.. . -+=.||++|-..|.+
T Consensus 31 ~~~~~il~~L~d~GyI~Gv~~~~~~~~i~~~~~~IT~~GleYL~E 75 (102)
T 2hgc_A 31 DQFDDAVNFLKREGYIIGVHYSDDRPHLYKLGPELTEKGENYLKE 75 (102)
T ss_dssp HHHHHHHHHHHHHTSEECCEESSSSEECCSSCCEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccceEEEeCcceeeccCceECHHHHHHHHH
Confidence 34567899999999997331 1 123489999988864
No 288
>2kj5_A Phage integrase; GFT PSI-2, NESG, structural genomics, structure initiative; NMR {Nitrosospira multiformis atcc 25196}
Probab=21.58 E-value=61 Score=18.77 Aligned_cols=23 Identities=13% Similarity=0.228 Sum_probs=18.6
Q ss_pred chhHHHHHHHHHHhCCcccccCC
Q 034587 44 SGAIARHILQQLQNMNIIDIEPK 66 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~~ 66 (90)
.-+++|.+++-..+.|+++.+|-
T Consensus 75 ~~~~l~~~~~~A~~~~~i~~NP~ 97 (116)
T 2kj5_A 75 TLRWLKRMFNYAIKRHIIEYNPA 97 (116)
T ss_dssp HHHHHHHHHHHHHHTTSCSSCGG
T ss_pred HHHHHHHHHHHHHHcCccccCch
Confidence 34578888888899999988873
No 289
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=21.52 E-value=60 Score=22.14 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=17.4
Q ss_pred chhHHHHHHHHHHhCCccccc
Q 034587 44 SGAIARHILQQLQNMNIIDIE 64 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~ 64 (90)
+..-+=.+|++|++.|+|+..
T Consensus 230 sr~tvsR~l~~L~~~GlI~~~ 250 (260)
T 3kcc_A 230 SRETVGRILKMLEDQNLISAH 250 (260)
T ss_dssp CHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHHHHHHHCCCEEEc
Confidence 345677899999999999875
No 290
>2dgb_A Hypothetical protein PURS; purine, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.10A {Thermus thermophilus} PDB: 2cuw_A
Probab=21.51 E-value=39 Score=20.57 Aligned_cols=41 Identities=10% Similarity=0.248 Sum_probs=23.3
Q ss_pred hhHHHHHHHHHHhCCc-ccccCCCCeeeCcch--------HhhHHHHHHHhhcCC
Q 034587 45 GAIARHILQQLQNMNI-IDIEPKGGRRITSSG--------QRDLDQVAGRIVVAP 90 (90)
Q Consensus 45 g~iiR~~LqqLE~~gl-V~k~~~~GR~lT~~G--------~~~lD~iA~~v~~~~ 90 (90)
|..+.++ |..+|+ |+... -|+.++=.+ ...++.+| +++.+|
T Consensus 21 G~av~~a---l~~LG~~v~~VR-~gK~~~l~~~~~~~~~a~~~v~~~~-~LLaNp 70 (84)
T 2dgb_A 21 GRAVEGV---LKDLGHPVEEVR-VGKVLEIVFPAENLLEAEEKAKAMG-ALLANP 70 (84)
T ss_dssp HHHHHHH---HHHTTCCCSEEE-EEEEEEEEEECSSHHHHHHHHHHHH-HHHSCT
T ss_pred HHHHHHH---HHHCCCChhhEE-EEEEEEEEecCCCHHHHHHHHHHHH-HHhCCc
Confidence 4444444 555566 54443 366554333 34588999 887665
No 291
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=21.34 E-value=83 Score=22.16 Aligned_cols=41 Identities=20% Similarity=0.453 Sum_probs=29.5
Q ss_pred HHHHHHHHhhcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHH
Q 034587 5 VTSMARKIYLRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQ 54 (90)
Q Consensus 5 ~ASi~RklYl~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~Lqq 54 (90)
|=.++|.+|-.++.++..+...||.. .-...|.|-|..|-+
T Consensus 39 aD~ia~~l~~~~~~~~~~i~~~fG~~---------~~~~dg~ldR~~L~~ 79 (210)
T 4i1u_A 39 TDLIAHRITAPAGLAMPAIEQTFGPA---------FVAADGSLDRARMRA 79 (210)
T ss_dssp HHHHHHHHTSTTCTTHHHHHHHHCGG---------GBCTTSSBCHHHHHH
T ss_pred CcHHHHHHhcCCcHHHHHHHHHhChh---------hcCCCCCCcHHHHHH
Confidence 44688999999999999999999964 222345566655543
No 292
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=20.83 E-value=1.5e+02 Score=18.26 Aligned_cols=40 Identities=18% Similarity=0.306 Sum_probs=31.1
Q ss_pred hcCCCchhHHHHHhcCCCCCCCCCCccccCchhHHHHHHHHHHhCCcccccC
Q 034587 14 LRQGLGVGSFRRIYGGSKRNGSRPPHFCKSSGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 14 l~g~vGV~~Lr~~YGg~krrG~~P~h~~~asg~iiR~~LqqLE~~glV~k~~ 65 (90)
++.+++-+.|++.+... -+-++...+|++|++.|.|..+.
T Consensus 84 ~~~G~~keeLr~~~~~~------------~~~~~~~~ll~~l~~~g~l~~~~ 123 (135)
T 2v9v_A 84 LRPGLAREELRSRYFSR------------LPARVYQALLEEWSREGRLQLAA 123 (135)
T ss_dssp TSSCEEHHHHHHHHCTT------------SCHHHHHHHHHHHHHTTSEEECS
T ss_pred CccCCCHHHHHHHhccc------------CCHHHHHHHHHHHHHCCCEEecC
Confidence 45678889999988421 25579999999999999997663
No 293
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.66 E-value=67 Score=17.61 Aligned_cols=19 Identities=16% Similarity=0.287 Sum_probs=14.1
Q ss_pred chhHHHHHHHHHHhCCccc
Q 034587 44 SGAIARHILQQLQNMNIID 62 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~ 62 (90)
+|..--..+|||.+||+=+
T Consensus 4 ~~~~~~~~i~~L~~MGF~~ 22 (49)
T 1ify_A 4 TGSEYETMLTEIMSMGYER 22 (49)
T ss_dssp CSHHHHHHHHHHHHTTCCH
T ss_pred CCccCHHHHHHHHHcCCCH
Confidence 3455667899999999843
No 294
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=20.65 E-value=32 Score=20.11 Aligned_cols=17 Identities=18% Similarity=0.272 Sum_probs=13.3
Q ss_pred HHHHHHHHhCCcccccC
Q 034587 49 RHILQQLQNMNIIDIEP 65 (90)
Q Consensus 49 R~~LqqLE~~glV~k~~ 65 (90)
...|+||.+||+.+...
T Consensus 10 a~~L~~L~eMGF~D~~~ 26 (54)
T 2cp8_A 10 AALMAHLFEMGFCDRQL 26 (54)
T ss_dssp HHHHHHHHHHTCCCHHH
T ss_pred HHHHHHHHHcCCCcHHH
Confidence 45689999999987543
No 295
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=20.42 E-value=42 Score=23.83 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=18.9
Q ss_pred CCCccccCchhHHHHHHHHHHhCC-cccccCCCCeeeCcch-----HhhHHHHHHHhh
Q 034587 36 RPPHFCKSSGAIARHILQQLQNMN-IIDIEPKGGRRITSSG-----QRDLDQVAGRIV 87 (90)
Q Consensus 36 ~P~h~~~asg~iiR~~LqqLE~~g-lV~k~~~~GR~lT~~G-----~~~lD~iA~~v~ 87 (90)
.-.||..+||-+-|..- |.+++ +|-|- ||-.||..+ ...++++|.+|.
T Consensus 4 ~~~~~~~~~~~~~~~~~--~~~~k~iVIKi--GGs~l~~~~~~~~~~~~i~~~a~~i~ 57 (256)
T 2va1_A 4 SHHHHHHSSGLVPRGSH--MMRKQRIVIKI--SGACLKQNDSSIIDFIKINDLAEQIE 57 (256)
T ss_dssp ---------------------CCSEEEEEE--CGGGGCSSTTCSSCHHHHHHHHHHHH
T ss_pred ccccccccccccchhhh--hhhcCEEEEEe--chhhccCCCCCCCCHHHHHHHHHHHH
Confidence 44577778887777654 44444 45455 688998754 456777887764
No 296
>2khq_A Integrase; all-alpha, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; NMR {Staphylococcus saprophyticus subsp}
Probab=20.32 E-value=69 Score=18.28 Aligned_cols=23 Identities=9% Similarity=0.124 Sum_probs=18.5
Q ss_pred chhHHHHHHHHHHhCCcccccCC
Q 034587 44 SGAIARHILQQLQNMNIIDIEPK 66 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~~ 66 (90)
.-+++|.+++-..+.|+++.+|-
T Consensus 71 ~~~~l~~~~~~a~~~~~i~~NP~ 93 (110)
T 2khq_A 71 LNSYIRNAFDDAIHEGYVIKNPT 93 (110)
T ss_dssp HHHHHHHHHHHHHHTTCCCCCGG
T ss_pred HHHHHHHHHHHHHHCCCcccCcc
Confidence 34578888888889999988874
No 297
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=20.13 E-value=1.1e+02 Score=19.97 Aligned_cols=22 Identities=18% Similarity=0.212 Sum_probs=17.6
Q ss_pred chhHHHHHHHHHHhCCcccccC
Q 034587 44 SGAIARHILQQLQNMNIIDIEP 65 (90)
Q Consensus 44 sg~iiR~~LqqLE~~glV~k~~ 65 (90)
+..-+=.+|++|++.|+|+...
T Consensus 190 sr~tvsR~l~~l~~~g~I~~~~ 211 (227)
T 3d0s_A 190 SRETVNKALADFAHRGWIRLEG 211 (227)
T ss_dssp CHHHHHHHHHHHHHTTSEEEET
T ss_pred cHHHHHHHHHHHHHCCCEEecC
Confidence 3456677999999999998763
Done!