BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034588
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3O2E|A Chain A, Crystal Structure Of A Bol-Like Protein From Babesia
Bovis
Length = 105
Score = 90.5 bits (223), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/78 (56%), Positives = 54/78 (69%), Gaps = 1/78 (1%)
Query: 3 VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEE 62
V+K VE L S L+P L+V D SGGCGA F IVS+QFEGK LL R RLVN+A+ E
Sbjct: 23 VSKSIVEERLRSMLSPQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAE 82
Query: 63 MKQIHALSIKKAMTPEQW 80
M QIHA ++ K +TP +W
Sbjct: 83 MPQIHAFTM-KCLTPGEW 99
>pdb|2KDN|A Chain A, Solution Structure Of Pfe0790c, A Putative Bola-Like
Protein From The Protozoan Parasite Plasmodium
Falciparum
Length = 108
Score = 80.1 bits (196), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 37/75 (49%), Positives = 51/75 (68%), Gaps = 1/75 (1%)
Query: 8 VESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIH 67
+E L+S L P+ LE++D S GCG F+ IVS FE K+LL RHRLVN L+EE++ IH
Sbjct: 29 IEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQNIH 88
Query: 68 ALSIKKAMTPEQWKQ 82
A S+ K TP ++ +
Sbjct: 89 AFSM-KCHTPLEYDK 102
>pdb|1V9J|A Chain A, Solution Structure Of A Bola-Like Protein From Mus
Musculus
Length = 113
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/85 (43%), Positives = 51/85 (60%), Gaps = 2/85 (2%)
Query: 1 MGVTKEKVESTLTSKLNPSHLEVIDTS-GGCGAKFEIEIVSEQFEGKRLLARHRLVNAAL 59
M ++ + + L L H+EV DT+ C F + +VS +FEGK LL RHRLVN L
Sbjct: 28 MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECL 87
Query: 60 EEEMKQIHALSIKKAMTPEQWKQQQ 84
EE+ IHA +K +TPEQW +Q+
Sbjct: 88 AEELPHIHAFE-QKTLTPEQWTRQR 111
>pdb|1V60|A Chain A, Solution Structure Of Bola1 Protein From Mus Musculus
Length = 123
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 2 GVTKEKVESTLTSKLNPSHLEVIDTSGG----CGAK--FEIEIVSEQFEGKRLLARHRLV 55
G + + + L L+P LE+ + SGG G++ F + +VS +FEG L RHRLV
Sbjct: 25 GPVEAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLV 84
Query: 56 NAALEEEMK-QIHALSIKKAMTPEQWKQQQE 85
+ AL EE+ +HAL+I +A TP QW++ +
Sbjct: 85 HEALSEELAGPVHALAI-QAKTPAQWRENPQ 114
>pdb|2DHM|A Chain A, Solution Structure Of The Bola Protein From Escherichia
Coli
Length = 107
Score = 56.2 bits (134), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 8/93 (8%)
Query: 5 KEKVESTLTSKLNPSHLEVIDTS------GGCGAKFEIEIVSEQFEGKRLLARHRLVNAA 58
+E++E L + P LEV+D S G + F++ +VS++F G+R L RHR++ +
Sbjct: 11 RERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYST 70
Query: 59 LEEEMK-QIHALSIKKAMTPEQWKQQQESNAAA 90
L EE+ +HAL++ T ++W+ Q++ A+
Sbjct: 71 LAEELSTTVHALAL-HTYTIKEWEGLQDTVFAS 102
>pdb|1XS3|A Chain A, Solution Structure Analysis Of The Xc975 Protein
Length = 80
Score = 47.4 bits (111), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 24 IDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEM-KQIHALSIKKAMTPEQ 79
+D G G FE +VS F GK LARHR+V A L E M IHAL + K +TP++
Sbjct: 24 VDVQGEDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQL-KTLTPDE 79
>pdb|3TR3|A Chain A, Structure Of A Bola Protein Homologue From Coxiella
Burnetii
pdb|3TR3|B Chain B, Structure Of A Bola Protein Homologue From Coxiella
Burnetii
Length = 82
Score = 42.7 bits (99), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Query: 29 GCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK-QIHALSIKKAMTPEQWKQ 82
G G FE ++ FEG+ L RHRLV AL + IHALS+ K TP+++++
Sbjct: 28 GDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHXQSDIHALSL-KTYTPDEYER 81
>pdb|1NY8|A Chain A, Solution Structure Of Protein Yrba From Escherichia
Coli: Northeast Structural Genomics Consortium Target
Er115
Length = 97
Score = 37.7 bits (86), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 45/84 (53%), Gaps = 7/84 (8%)
Query: 7 KVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEM--K 64
+++S L + L+ + V G G+ F++ V E F+G + + + V L E +
Sbjct: 10 EIQSVLMNALSLQEVHV----SGDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADN 65
Query: 65 QIHALSIKKAMTPEQWKQQQESNA 88
+IHA+SI KA TP +W + ++ N
Sbjct: 66 RIHAVSI-KAYTPAEWARDRKLNG 88
>pdb|2KZ0|A Chain A, Solution Structure Of A Bola Protein (Ech_0303) From
Ehrlichia Chaffeensis. Seattle Structural Genomics
Center For Infectious Disease Target Ehcha.10365.A
Length = 76
Score = 33.1 bits (74), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
Query: 1 MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALE 60
M VT+ ++E + + + + V G + I+++S QF+GK L +HR++ L+
Sbjct: 4 MTVTQSQLELLIRNAFPEAEITVTSLVGD-NNHYSIKVISSQFQGKSKLEQHRMIYKVLD 62
Query: 61 EEMKQIHALSIK 72
IHA+ I+
Sbjct: 63 G--LNIHAIQIQ 72
>pdb|2W8T|A Chain A, Spt With Plp, N100c
Length = 427
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 42 QFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQESNAAA 90
+FE RL R + A+L + SI+K MT + +++ SNA A
Sbjct: 279 KFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARA 327
>pdb|2W8U|A Chain A, Spt With Plp, N100y
Length = 427
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 42 QFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQESNAAA 90
+FE RL R + A+L + SI+K MT + +++ SNA A
Sbjct: 279 KFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARA 327
>pdb|2W8V|A Chain A, Spt With Plp, N100w
Length = 427
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 42 QFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQESNAAA 90
+FE RL R + A+L + SI+K MT + +++ SNA A
Sbjct: 279 KFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARA 327
>pdb|2JG2|A Chain A, High Resolution Structure Of Spt With Plp Internal
Aldimine
Length = 422
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 42 QFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQESNAAA 90
+FE RL R + A+L + SI+K MT + +++ SNA A
Sbjct: 280 KFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARA 328
>pdb|2W8W|A Chain A, N100y Spt With Plp-Ser
Length = 427
Score = 28.1 bits (61), Expect = 1.4, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 42 QFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQESNAAA 90
+FE RL R + A+L + SI+K MT + +++ SNA A
Sbjct: 279 KFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARA 327
>pdb|2W8J|A Chain A, Spt With Plp-Ser
pdb|2XBN|A Chain A, Inhibition Of The Plp-Dependent Enzyme Serine
Palmitoyltransferase By Cycloserine: Evidence For A
Novel Decarboxylative Mechanism Of Inactivation
Length = 427
Score = 28.1 bits (61), Expect = 1.5, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 42 QFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQESNAAA 90
+FE RL R + A+L + SI+K MT + +++ SNA A
Sbjct: 279 KFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARA 327
>pdb|2JGT|A Chain A, Low Resolution Structure Of Spt
pdb|2JGT|B Chain B, Low Resolution Structure Of Spt
Length = 422
Score = 27.7 bits (60), Expect = 1.5, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 42 QFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQQQESNAAA 90
+FE RL R + A+L + SI+K MT + +++ SNA A
Sbjct: 280 KFEAVRLACRPYIFTASLPPSVVATATTSIRKLMTAHEKRERLWSNARA 328
>pdb|3KSC|A Chain A, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|B Chain B, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|C Chain C, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|D Chain D, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|E Chain E, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L.
pdb|3KSC|F Chain F, Crystal Structure Of Pea Prolegumin, An 11s Seed Globulin
From Pisum Sativum L
Length = 496
Score = 26.6 bits (57), Expect = 3.4, Method: Composition-based stats.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 29 GCGAKFEIEIVSEQFEGKRLLARHRLVN 56
GC FE SEQ EG+R RH+ VN
Sbjct: 85 GCPETFEEPQESEQGEGRRYRDRHQKVN 112
>pdb|3GPI|A Chain A, Structure Of Putative Nad-Dependent EpimeraseDEHYDRATASE
From Methylobacillus Flagellatus
Length = 286
Score = 26.2 bits (56), Expect = 5.2, Method: Composition-based stats.
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 8/49 (16%)
Query: 39 VSEQFEGKRLLARHRLVNAALEEEMKQIHAL-------SIKKAMTPEQW 80
+++ F GKR+L L+ AA + + + I++A TPEQW
Sbjct: 128 IAKDFSGKRMLEAEALL-AAYSSTILRFSGIYGPGRLRMIRQAQTPEQW 175
>pdb|3LX7|A Chain A, Crystal Structure Of A Novel Tudor Domain-Containing
Protein Sgf29
Length = 174
Score = 26.2 bits (56), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 59 LEEEMKQIHALSIKKAMTPEQWKQQQESNAAA 90
++EE K+ H LS ++ + QWK E++ A
Sbjct: 76 IDEEGKERHTLSRRRVIPLPQWKANPETDPEA 107
>pdb|3MEW|A Chain A, Crystal Structure Of Novel Tudor Domain-Containing
Protein Sgf29
Length = 159
Score = 26.2 bits (56), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 59 LEEEMKQIHALSIKKAMTPEQWKQQQESNAAA 90
++EE K+ H LS ++ + QWK E++ A
Sbjct: 67 IDEEGKERHTLSRRRVIPLPQWKANPETDPEA 98
>pdb|3MEA|A Chain A, Crystal Structure Of The Sgf29 In Complex With H3k4me3
Length = 180
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 59 LEEEMKQIHALSIKKAMTPEQWKQQQESNAAA 90
++EE K+ H LS ++ + QWK E++ A
Sbjct: 84 IDEEGKERHTLSRRRVIPLPQWKANPETDPEA 115
>pdb|3ME9|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide
pdb|3ME9|B Chain B, Crystal Structure Of Sgf29 In Complex With H3k4me3 Peptide
pdb|3MET|A Chain A, Crystal Structure Of Sgf29 In Complex With H3k4me2
pdb|3MET|B Chain B, Crystal Structure Of Sgf29 In Complex With H3k4me2
pdb|3MEU|A Chain A, Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
pdb|3MEU|B Chain B, Crystal Structure Of Sgf29 In Complex With H3r2me2sk4me3
pdb|3MEV|A Chain A, Crystal Structure Of Sgf29 In Complex With R2ak4me3
pdb|3MEV|B Chain B, Crystal Structure Of Sgf29 In Complex With R2ak4me3
Length = 180
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 59 LEEEMKQIHALSIKKAMTPEQWKQQQESNAAA 90
++EE K+ H LS ++ + QWK E++ A
Sbjct: 82 IDEEGKERHTLSRRRVIPLPQWKANPETDPEA 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.310 0.124 0.332
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,431,451
Number of Sequences: 62578
Number of extensions: 77075
Number of successful extensions: 252
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 229
Number of HSP's gapped (non-prelim): 24
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)