Query 034588
Match_columns 90
No_of_seqs 108 out of 1029
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 06:46:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034588.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034588hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kdn_A Putative uncharacterize 100.0 1.5E-37 5.1E-42 206.6 9.2 84 3-87 24-107 (108)
2 3o2e_A BOLA-like protein; ssgc 100.0 1.3E-36 4.3E-41 201.3 7.6 82 3-85 23-104 (105)
3 1v9j_A BOLA-like protein riken 100.0 8.8E-37 3E-41 204.3 6.0 84 1-85 28-112 (113)
4 2dhm_A Protein BOLA; stationar 100.0 2.7E-35 9.3E-40 195.4 7.0 83 3-86 9-98 (107)
5 1v60_A BOLA1, riken cDNA 18100 100.0 9.3E-35 3.2E-39 196.9 6.6 83 2-85 25-114 (123)
6 3tr3_A BOLA; cellular processe 100.0 1.1E-33 3.9E-38 179.9 7.0 76 3-82 5-81 (82)
7 1ny8_A Protein YRBA; structure 100.0 1.2E-33 4.2E-38 184.7 6.0 81 2-87 5-87 (97)
8 1xs3_A Hypothetical protein XC 100.0 1E-33 3.5E-38 179.3 5.2 76 1-80 4-80 (80)
9 2kz0_A BOLA family protein; BO 100.0 1.4E-33 4.9E-38 177.3 5.3 73 1-77 4-76 (76)
10 1ylq_A Putative nucleotidyltra 91.0 1.7 5.7E-05 26.5 7.7 71 5-81 4-80 (96)
11 2rff_A Putative nucleotidyltra 54.1 30 0.001 21.5 5.0 64 11-83 25-95 (111)
12 3d7a_A UPF0201 protein PH1010; 52.3 26 0.0009 23.0 4.7 22 4-25 19-40 (138)
13 3tuf_A Stage III sporulation p 40.5 22 0.00075 25.1 3.0 50 4-59 133-183 (197)
14 1ghh_A DINI, DNA-damage-induci 38.7 65 0.0022 19.5 5.7 49 5-64 22-72 (81)
15 2ogk_A Hypothetical protein; a 36.5 44 0.0015 22.1 3.9 38 4-45 20-60 (146)
16 2pzz_A UPF0201 protein MJ1564; 34.2 60 0.002 21.5 4.3 24 4-27 15-38 (147)
17 2ljk_A Protein C17ORF37; MIEN1 34.0 30 0.001 22.3 2.7 33 3-38 39-71 (117)
18 3bej_E Nuclear receptor coacti 33.6 28 0.00097 16.9 1.9 16 47-62 7-22 (26)
19 1klr_A Zinc finger Y-chromosom 24.6 46 0.0016 13.7 1.7 17 40-56 9-25 (30)
20 2m0e_A Zinc finger and BTB dom 23.9 49 0.0017 13.4 2.5 17 40-56 9-25 (29)
21 2lvu_A Zinc finger and BTB dom 28.3 18 0.00062 15.0 0.0 18 38-55 7-24 (26)
22 1j27_A Hypothetical protein TT 21.3 1.6E+02 0.0053 18.3 4.4 38 5-42 26-63 (102)
23 2b4v_A RNA editing complex pro 21.0 1.2E+02 0.0041 23.6 4.4 56 6-62 46-109 (468)
24 3sgv_B Undecaprenyl pyrophosph 20.4 66 0.0022 23.4 2.6 43 42-85 33-80 (253)
No 1
>2kdn_A Putative uncharacterized protein PFE0790C; solution structure, ssgcid, seattle structural genomics center for infectious disease; NMR {Plasmodium falciparum}
Probab=100.00 E-value=1.5e-37 Score=206.62 Aligned_cols=84 Identities=44% Similarity=0.759 Sum_probs=80.6
Q ss_pred ccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcccccccccCccCCHHHHHH
Q 034588 3 VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQ 82 (90)
Q Consensus 3 ~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~IHAls~i~t~tp~Ew~~ 82 (90)
|+.++|+++|+++|+|+.|+|+|+|+|||+||+|+|||+.|+||++|+|||+||++|+++|+.||||+ |+|+||+||++
T Consensus 24 m~~~~I~~~L~~~l~p~~l~V~DeS~G~gsHF~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~IHALs-i~t~TP~Ew~~ 102 (108)
T 2kdn_A 24 CIQKVIEDKLSSALKPTFLELVDKSCGCGTSFDAVIVSNNFEDKKLLDRHRLVNTILKEELQNIHAFS-MKCHTPLEYDK 102 (108)
T ss_dssp SHHHHHHHHHHHHHCCSEEEEEECCCSSSCCEEEEEECGGGTTCCHHHHHHHHHHHHHHHGGGCSCEE-EEEECHHHHHH
T ss_pred CcHHHHHHHHHhhCCCcEEEEEeCCCCCCceEEEEEEehhhCCCCHHHHHHHHHHHHHHHHhcCceEE-EEecChHHHHH
Confidence 78999999999999999999999999899999999999999999999999999999999999999999 99999999998
Q ss_pred chhhh
Q 034588 83 QQESN 87 (90)
Q Consensus 83 ~~~~~ 87 (90)
++++.
T Consensus 103 ~~~~~ 107 (108)
T 2kdn_A 103 LKSKG 107 (108)
T ss_dssp HHHTC
T ss_pred hhccC
Confidence 77654
No 2
>3o2e_A BOLA-like protein; ssgcid, iodide, SAD, seattle structural genom center for infectious disease, BOL like protein, unknown FU; 1.95A {Babesia bovis}
Probab=100.00 E-value=1.3e-36 Score=201.31 Aligned_cols=82 Identities=54% Similarity=0.863 Sum_probs=78.7
Q ss_pred ccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcccccccccCccCCHHHHHH
Q 034588 3 VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQWKQ 82 (90)
Q Consensus 3 ~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~IHAls~i~t~tp~Ew~~ 82 (90)
...++|+++|+++|+|..|+|+|+|+|||+||+|+|||+.|+|||+|+|||+||++|+++|++||||+ |+||||+||++
T Consensus 23 ~~~~~I~~kL~~~l~p~~l~V~D~S~g~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~~IHALs-i~t~TP~Ew~~ 101 (105)
T 3o2e_A 23 VSKSIVEERLRSMLSPQFLKVTDNSGGCGAAFNAYIVSQQFEGKGLLDRQRLVNSAIAAEMPQIHAFT-MKCLTPGEWEA 101 (105)
T ss_dssp CCHHHHHHHHHHHHCCSEEEEEECCBTTBEEEEEEEECGGGTTCCHHHHHHHHHHHTTTTGGGEEEEE-EEEECHHHHHH
T ss_pred cHHHHHHHHHHhhCCCCEEEEEECCCCCCcEEEEEEEchHhCCCCHHHHHHHHHHHHHHHHhcCceeE-EEeCCHHHHHH
Confidence 36899999999999999999999998899999999999999999999999999999999999999999 99999999998
Q ss_pred chh
Q 034588 83 QQE 85 (90)
Q Consensus 83 ~~~ 85 (90)
++.
T Consensus 102 ~~~ 104 (105)
T 3o2e_A 102 KNR 104 (105)
T ss_dssp TTC
T ss_pred hhC
Confidence 654
No 3
>1v9j_A BOLA-like protein riken cDNA 1110025L05; stationary phase morphogene, stress-induced morphogene, structural genomics; NMR {Mus musculus} SCOP: d.52.6.1
Probab=100.00 E-value=8.8e-37 Score=204.28 Aligned_cols=84 Identities=44% Similarity=0.788 Sum_probs=80.0
Q ss_pred CcccHHHHHHHHhhcCCCCeEEEEeCC-CCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcccccccccCccCCHHH
Q 034588 1 MGVTKEKVESTLTSKLNPSHLEVIDTS-GGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQ 79 (90)
Q Consensus 1 m~~~~~~I~~~l~~~l~~~~v~V~d~S-~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~IHAls~i~t~tp~E 79 (90)
|.|+.++|+++|+++|+|+.|+|+|+| +|||+||+|+|||+.|+||++|+|||+||++|+++|+.||||+ |+|+||+|
T Consensus 28 M~m~~~~I~~~L~~~l~p~~l~V~DeS~~G~gsHF~v~IVS~~F~Gks~V~RHRlVy~aL~eei~~IHALs-i~t~TP~E 106 (113)
T 1v9j_A 28 MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPHIHAFE-QKTLTPEQ 106 (113)
T ss_dssp SSSCHHHHHHHHHHHHTCSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGGGCSSEE-EEEECHHH
T ss_pred ccCcHHHHHHHHHhhCCCcEEEEEeccCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHhcCceEE-EEecChHH
Confidence 568999999999999999999999999 5789999999999999999999999999999999999999999 99999999
Q ss_pred HHHchh
Q 034588 80 WKQQQE 85 (90)
Q Consensus 80 w~~~~~ 85 (90)
|+++++
T Consensus 107 w~~~~~ 112 (113)
T 1v9j_A 107 WTRQRR 112 (113)
T ss_dssp HHHSCC
T ss_pred HHHhhc
Confidence 987653
No 4
>2dhm_A Protein BOLA; stationary-phase, stress-induced, morphogene, structural GEN NPPSFA; NMR {Escherichia coli str}
Probab=100.00 E-value=2.7e-35 Score=195.36 Aligned_cols=83 Identities=35% Similarity=0.707 Sum_probs=78.0
Q ss_pred ccHHHHHHHHhhcCCCCeEEEEeCCC------CCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc-cccccccCccC
Q 034588 3 VTKEKVESTLTSKLNPSHLEVIDTSG------GCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK-QIHALSIKKAM 75 (90)
Q Consensus 3 ~~~~~I~~~l~~~l~~~~v~V~d~S~------~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~-~IHAls~i~t~ 75 (90)
+..++|+++|++.|+|.+|+|+|+|+ |||+||+|+|||+.|+||++|+|||+||++|+++|+ +||||+ |+|+
T Consensus 9 ~~~~~I~~~L~~~l~p~~l~V~d~S~~H~~~~G~gsHf~v~IVS~~F~G~s~v~RHrlVy~~L~~ei~~~IHALs-i~t~ 87 (107)
T 2dhm_A 9 MIRERIEEKLRAAFQPVFLEVVDESYRHNVPAGSESHFKVVLVSDRFTGERFLNRHRMIYSTLAEELSTTVHALA-LHTY 87 (107)
T ss_dssp CHHHHHHHHHHHHTCCSCCEEEECCCCCSSCCCSCCCEEEEEECGGGSSCCSSHHHHHHHHHTHHHHHTTCCCCE-EEEE
T ss_pred CHHHHHHHHHHhcCCCcEEEEEECcccccCCCCCCceEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcceEE-EEec
Confidence 56799999999999999999999994 789999999999999999999999999999999999 599999 9999
Q ss_pred CHHHHHHchhh
Q 034588 76 TPEQWKQQQES 86 (90)
Q Consensus 76 tp~Ew~~~~~~ 86 (90)
||+||++++++
T Consensus 88 TP~Ew~~~~~~ 98 (107)
T 2dhm_A 88 TIKEWEGLQDT 98 (107)
T ss_dssp CHHHHHTSSCC
T ss_pred CHHHHHhccCC
Confidence 99999986554
No 5
>1v60_A BOLA1, riken cDNA 1810037G04; stationary phase morphogene, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=100.00 E-value=9.3e-35 Score=196.86 Aligned_cols=83 Identities=40% Similarity=0.716 Sum_probs=78.4
Q ss_pred cccHHHHHHHHhhcCCCCeEEEEeCCC------CCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc-cccccccCcc
Q 034588 2 GVTKEKVESTLTSKLNPSHLEVIDTSG------GCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK-QIHALSIKKA 74 (90)
Q Consensus 2 ~~~~~~I~~~l~~~l~~~~v~V~d~S~------~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~-~IHAls~i~t 74 (90)
++..++|+++|+++|+|.+|+|+|+|+ |||+||+|+|||+.|+||++|+|||+||++|+++|+ +||||+ |+|
T Consensus 25 ~~~~~~I~~~L~~~l~p~~l~V~DeS~~H~~~~G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~ei~~~IHALs-i~t 103 (123)
T 1v60_A 25 GPVEAAIRAKLEQALSPEVLELRNESGGHAVPAGSETHFRVAVVSSRFEGMSPLQRHRLVHEALSEELAGPVHALA-IQA 103 (123)
T ss_dssp CHHHHHHHHHHHHHTCCSEEEEEECCCSSSCCTTCCSEEEEEEECGGGTTCCHHHHHHHHHHHTHHHHTTTCSEEE-EEE
T ss_pred CcHHHHHHHHHHhhCCCeEEEEEECcccccCCCCCCCeEEEEEEehhhCCCCHHHHHHHHHHHHHHHHcCCcceeE-eEe
Confidence 456899999999999999999999996 789999999999999999999999999999999999 699999 999
Q ss_pred CCHHHHHHchh
Q 034588 75 MTPEQWKQQQE 85 (90)
Q Consensus 75 ~tp~Ew~~~~~ 85 (90)
+||+||+++++
T Consensus 104 ~TP~Ew~~~~~ 114 (123)
T 1v60_A 104 KTPAQWRENPQ 114 (123)
T ss_dssp ECTTTTTTCCC
T ss_pred cCHHHHHhccC
Confidence 99999997655
No 6
>3tr3_A BOLA; cellular processes, stress-induced, unknown function; 2.46A {Coxiella burnetii}
Probab=100.00 E-value=1.1e-33 Score=179.94 Aligned_cols=76 Identities=37% Similarity=0.589 Sum_probs=72.9
Q ss_pred ccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc-cccccccCccCCHHHHH
Q 034588 3 VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK-QIHALSIKKAMTPEQWK 81 (90)
Q Consensus 3 ~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~-~IHAls~i~t~tp~Ew~ 81 (90)
|+.++|+++|+++|+|++|+|. +|||+||+|+|||+.|+|||+|+|||+||++|+++|+ .||||+ |+|+||+||+
T Consensus 5 m~~~~I~~~L~~~l~~~~l~V~---~g~gshf~v~IVS~~F~G~~~v~Rhr~V~~~L~~~~~~~iHAL~-i~t~Tp~Ew~ 80 (82)
T 3tr3_A 5 VTTHDIKQWIETGLSESRVISA---EGDGHHFEAVVLCPTFEGQTALTRHRLVYNALGSHMQSDIHALS-LKTYTPDEYE 80 (82)
T ss_dssp CCHHHHHHHHHHHSTTCEEEEE---EECSSEEEEEEECGGGTTCCHHHHHHHHHHHTGGGGTTTCSEEE-EEEECHHHHH
T ss_pred chHHHHHHHHHhhCCCcEEEEE---cCCCCeEEEEEEchhhCCCCHHHHHHHHHHHHHHHHcCCcceEE-EEeCCHHHHh
Confidence 7899999999999999999998 4689999999999999999999999999999999998 799999 9999999997
Q ss_pred H
Q 034588 82 Q 82 (90)
Q Consensus 82 ~ 82 (90)
+
T Consensus 81 ~ 81 (82)
T 3tr3_A 81 R 81 (82)
T ss_dssp C
T ss_pred c
Confidence 5
No 7
>1ny8_A Protein YRBA; structure, autoassign, autostructure, NESG, structural genomics, PSI, protein structure initiative; NMR {Escherichia coli} SCOP: d.52.6.1
Probab=100.00 E-value=1.2e-33 Score=184.68 Aligned_cols=81 Identities=30% Similarity=0.519 Sum_probs=75.8
Q ss_pred cccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc--cccccccCccCCHHH
Q 034588 2 GVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK--QIHALSIKKAMTPEQ 79 (90)
Q Consensus 2 ~~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~--~IHAls~i~t~tp~E 79 (90)
.|+.++|+++|+++|+|+.|+|. |||+||+|+|||+.|+|||+|+|||+||++|+++|+ +||||+ |+|+||+|
T Consensus 5 ~m~~~~I~~~L~~~l~p~~l~V~----G~gsHf~v~IVS~~F~Gks~v~RHRlVy~aL~~e~~~~~IHALs-i~t~TP~E 79 (97)
T 1ny8_A 5 PMENNEIQSVLMNALSLQEVHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVS-IKAYTPAE 79 (97)
T ss_dssp CCCCHHHHHHHHHHHCCSEEEEE----ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEE-EEECCHHH
T ss_pred ccCHHHHHHHHHhhCCCcEEEEE----cCCceEEEEEEChhhCCCCHHHHHHHHHHHHHHHHccCCcceEE-eEecChHH
Confidence 46789999999999999999999 799999999999999999999999999999999998 399999 99999999
Q ss_pred HHHchhhh
Q 034588 80 WKQQQESN 87 (90)
Q Consensus 80 w~~~~~~~ 87 (90)
|++++.++
T Consensus 80 w~~~~~~~ 87 (97)
T 1ny8_A 80 WARDRKLN 87 (97)
T ss_dssp HHHHHHTT
T ss_pred HHhhhhhc
Confidence 99876553
No 8
>1xs3_A Hypothetical protein XC975; BOLA-like, structural genomics, AN integrated structural and functional genomic project, unknown function; NMR {Synthetic}
Probab=100.00 E-value=1e-33 Score=179.30 Aligned_cols=76 Identities=39% Similarity=0.555 Sum_probs=72.2
Q ss_pred CcccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc-cccccccCccCCHHH
Q 034588 1 MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK-QIHALSIKKAMTPEQ 79 (90)
Q Consensus 1 m~~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~-~IHAls~i~t~tp~E 79 (90)
|.|+.++|+++|+++|+|++++|+ |+||+||+|+|||+.|+|+|+|+|||+||++|+++|+ +||||+ |+|+||+|
T Consensus 4 ~mm~~~~I~~~L~~~l~~~~l~V~---G~~gsHf~v~IVS~~F~G~~~v~RHrlVy~~L~~e~~~~iHALs-i~t~Tp~E 79 (80)
T 1xs3_A 4 RPLDAETIRKLIESGLPEARVDVQ---GEDGVHFEATVVSPAFVGKAPLARHRMVYATLGELMGGAIHALQ-LKTLTPDE 79 (80)
T ss_dssp SCCHHHHHHHHHHHHSSSCEEEEE---SCTTSCCEEEEECGGGCSSCCHHHHHHHHHHTTSTTTTCCSCCE-EEEECGGG
T ss_pred ccCCHHHHHHHHHhhCCCcEEEEE---cCCCCEEEEEEEchhhCCCcHHHHHHHHHHHHHHHHcCCcceEE-EEecCCCC
Confidence 378999999999999999999999 3489999999999999999999999999999999998 699999 99999999
Q ss_pred H
Q 034588 80 W 80 (90)
Q Consensus 80 w 80 (90)
|
T Consensus 80 ~ 80 (80)
T 1xs3_A 80 A 80 (80)
T ss_dssp C
T ss_pred C
Confidence 7
No 9
>2kz0_A BOLA family protein; BOLA protein family, human monocytotropic ehrlichiosis, STRE response, structural genomics; NMR {Ehrlichia chaffeensis}
Probab=99.98 E-value=1.4e-33 Score=177.27 Aligned_cols=73 Identities=26% Similarity=0.459 Sum_probs=71.0
Q ss_pred CcccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcccccccccCccCCH
Q 034588 1 MGVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTP 77 (90)
Q Consensus 1 m~~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~IHAls~i~t~tp 77 (90)
|.|+.++|+++|+++|+|++++|+|+| |||+||+|+|||+.|+|||+|+|||+||++|+++ +||||+ |+|+||
T Consensus 4 M~m~~~~I~~~L~~~l~~~~l~V~d~S-G~g~Hf~v~IVS~~F~G~s~v~rHr~Vy~~L~~e--~iHALs-i~t~tp 76 (76)
T 2kz0_A 4 MTVTQSQLELLIRNAFPEAEITVTSLV-GDNNHYSIKVISSQFQGKSKLEQHRMIYKVLDGL--NIHAIQ-IQTGCK 76 (76)
T ss_dssp SSCTTHHHHHHHHHHCTTEEEEEECCS-STTSCCEEEEEEGGGTTCCHHHHHHHHHHHTTTS--CCCSSS-EEECCC
T ss_pred CcccHHHHHHHHHhhCCCcEEEEEECC-CCccEEEEEEEchHhCCCCHHHHHHHHHHHhccC--CceEEE-EEEeCC
Confidence 778999999999999999999999999 7899999999999999999999999999999999 999999 999997
No 10
>1ylq_A Putative nucleotidyltransferase, hypothetical Pro AF0614; structural genomics, PSI, protein ST initiative; 2.02A {Archaeoglobus fulgidus} SCOP: d.218.1.5
Probab=91.02 E-value=1.7 Score=26.47 Aligned_cols=71 Identities=10% Similarity=0.259 Sum_probs=48.4
Q ss_pred HHHHHHHHhhcCCCCeEEEEeCC----CCCc-ceEEEEEEccccCCCCHHHHHHHHHHHHHHh-cccccccccCccCCHH
Q 034588 5 KEKVESTLTSKLNPSHLEVIDTS----GGCG-AKFEIEIVSEQFEGKRLLARHRLVNAALEEE-MKQIHALSIKKAMTPE 78 (90)
Q Consensus 5 ~~~I~~~l~~~l~~~~v~V~d~S----~~~g-shf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~-~~~IHAls~i~t~tp~ 78 (90)
.++|.+.+++.+++..+.+.--- ...+ |.+.+.|+++. +.+...+-++.. .|.+. +. +-+. +..+|++
T Consensus 4 l~~i~~~l~~~~~~~~v~LFGS~ArG~~~~~~SDiDllV~~~~--~~~~~~~~~l~~-~l~~~~~~--~~vd-~~v~~~~ 77 (96)
T 1ylq_A 4 MKEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDV--FEDRNRKLEFFG-KITKKFFD--SPFE-FHILTKK 77 (96)
T ss_dssp HHHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGG--GGSHHHHHHHHH-HHHHHTTT--CSEE-EEEECHH
T ss_pred HHHHHHHHHHHcCCcEEEEEEEEEeCCCCCCCCceEEEEEeCC--CCCHHHHHHHHH-HHHHhhcC--CCeE-EEEECHH
Confidence 46789999998988888876100 0246 89999999986 566666665544 44444 33 3445 5568999
Q ss_pred HHH
Q 034588 79 QWK 81 (90)
Q Consensus 79 Ew~ 81 (90)
||+
T Consensus 78 ~~~ 80 (96)
T 1ylq_A 78 EWK 80 (96)
T ss_dssp HHH
T ss_pred HHc
Confidence 987
No 11
>2rff_A Putative nucleotidyltransferase; NP_343093.1, nucleotidyltransferase domain, structural genomics; HET: MSE; 1.40A {Sulfolobus solfataricus P2}
Probab=54.07 E-value=30 Score=21.47 Aligned_cols=64 Identities=9% Similarity=0.096 Sum_probs=37.9
Q ss_pred HHhhcC-CCCeEEEEeCC-----CCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc-cccccccCccCCHHHHHHc
Q 034588 11 TLTSKL-NPSHLEVIDTS-----GGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK-QIHALSIKKAMTPEQWKQQ 83 (90)
Q Consensus 11 ~l~~~l-~~~~v~V~d~S-----~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~-~IHAls~i~t~tp~Ew~~~ 83 (90)
.|.+.+ +...+-+.- | ...+|.+.+.|+.+...+.....+- ..|.+.+. .+. +-+++|++|+..
T Consensus 25 ~l~~~~~~v~~v~LFG-S~ArG~~~~~SDIDl~V~~~~~~~~~~~~~~----~~l~~~l~~~VD----lv~~~~~~~~~i 95 (111)
T 2rff_A 25 EVASSFPNLEEVYIFG-SRARGDYLDTSDIDILFVFKGIKEMNVFDRM----YMVSRFIRGNVD----YIVLDEGEKDRV 95 (111)
T ss_dssp HHHHHCTTEEEEEEES-HHHHSCCCTTCCEEEEEEESSCTTCCHHHHH----HHHGGGCCSSEE----EEEEEGGGGGGS
T ss_pred HHHHHcCCccEEEEEe-eeecCCCCCCCCEEEEEEecCCCChhHHHHH----HHHHHHhCCCEE----EEECCHHHHHHH
Confidence 344456 335566651 1 0246999999999877666555543 34555555 343 334678888754
No 12
>3d7a_A UPF0201 protein PH1010; DUF54 family, unknown function; 1.90A {Pyrococcus horikoshii}
Probab=52.31 E-value=26 Score=22.95 Aligned_cols=22 Identities=18% Similarity=0.273 Sum_probs=19.1
Q ss_pred cHHHHHHHHhhcCCCCeEEEEe
Q 034588 4 TKEKVESTLTSKLNPSHLEVID 25 (90)
Q Consensus 4 ~~~~I~~~l~~~l~~~~v~V~d 25 (90)
+.+++.+.|.+-||+..+++.+
T Consensus 19 D~eKV~~Al~nifp~~~i~~~~ 40 (138)
T 3d7a_A 19 DIRKVKKAMLNLIPGLQFEAFD 40 (138)
T ss_dssp CHHHHHHHHHHHSTTCEEEEEE
T ss_pred CHHHHHHHHHHhCCCCceEEEe
Confidence 5789999999999998888875
No 13
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=40.50 E-value=22 Score=25.12 Aligned_cols=50 Identities=18% Similarity=0.288 Sum_probs=34.8
Q ss_pred cHHHHHHHHh-hcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHH
Q 034588 4 TKEKVESTLT-SKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAAL 59 (90)
Q Consensus 4 ~~~~I~~~l~-~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L 59 (90)
.+..|+.+|+ ..|+++.|.+. +....|+|-++.....-..+-..+|..-+
T Consensus 133 kE~~IE~LLKAKGF~DAVV~i~------dd~V~VVVka~~Ls~~eaaqI~DIV~r~t 183 (197)
T 3tuf_A 133 TEKQLETLIKTQGYEDALVNAE------GDKINITVKSDKHSKSKATAIIDLVAKEI 183 (197)
T ss_dssp HHHHHHHHHHHTTCSCEEEECS------SSEEEEEEECSCCCHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHhCCCCceEEEec------CCEEEEEEeCCCCCHHHHHHHHHHHHHhh
Confidence 3567899998 78999999884 45899999986655444444444444443
No 14
>1ghh_A DINI, DNA-damage-inducible protein I; bicelle, dipolar coupling, liquid crystal, PF1, RECA, protein binding; NMR {Escherichia coli} SCOP: d.57.1.1
Probab=38.74 E-value=65 Score=19.49 Aligned_cols=49 Identities=10% Similarity=0.213 Sum_probs=34.2
Q ss_pred HHHHHHHHhhcCCCC--eEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc
Q 034588 5 KEKVESTLTSKLNPS--HLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK 64 (90)
Q Consensus 5 ~~~I~~~l~~~l~~~--~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~ 64 (90)
.+++.++|...||+. .|.|.--| ..+..|. |-+. .-+..|..+|.+.+.
T Consensus 22 ~~EL~kRl~~~fpd~~~~V~Vr~~s---~n~lsV~-------g~~k-~dKe~i~eiLqE~we 72 (81)
T 1ghh_A 22 AGELSRRIQYAFPDNEGHVSVRYAA---ANNLSVI-------GATK-EDKQRISEILQETWE 72 (81)
T ss_dssp HHHHHHHHHHHCSSSCCEEEEEEES---SCEEEEE-------SCCH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCceEEEeecC---CCceeec-------CCCh-hHHHHHHHHHHHHHh
Confidence 578999999999998 89997433 3345542 3333 357778888887664
No 15
>2ogk_A Hypothetical protein; archaeglobus fulgidus, structural genomics, PSI-2, protein structure initiative; 3.00A {Archaeoglobus fulgidus} SCOP: d.77.1.2
Probab=36.46 E-value=44 Score=22.06 Aligned_cols=38 Identities=13% Similarity=0.269 Sum_probs=25.5
Q ss_pred cHHHHHHHHhhcCCC-CeEEEEeCCCCCcceEE--EEEEccccCC
Q 034588 4 TKEKVESTLTSKLNP-SHLEVIDTSGGCGAKFE--IEIVSEQFEG 45 (90)
Q Consensus 4 ~~~~I~~~l~~~l~~-~~v~V~d~S~~~gshf~--i~VvS~~F~g 45 (90)
+.+++.+.|..-||+ ..+++.+.. .||. +.|++..+.+
T Consensus 20 D~eKV~~Al~nifp~~~~i~~~~~~----G~~Gn~i~il~~~i~~ 60 (146)
T 2ogk_A 20 DREKVGEAISTLFPFEFEIAVSKAK----GHYGNPMEYLEVELTK 60 (146)
T ss_dssp CHHHHHHHHGGGCSSCCCCEEEC------------CEEEEEEECS
T ss_pred CHHHHHHHHHHhCCCCCceEEEEee----eeccCcEEEEEEEeec
Confidence 568999999999997 778776433 2555 6677777776
No 16
>2pzz_A UPF0201 protein MJ1564; methanococcus jannaschii, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.20A {Methanocaldococcus jannaschii DSM2661} SCOP: d.77.1.2
Probab=34.23 E-value=60 Score=21.53 Aligned_cols=24 Identities=21% Similarity=0.318 Sum_probs=19.5
Q ss_pred cHHHHHHHHhhcCCCCeEEEEeCC
Q 034588 4 TKEKVESTLTSKLNPSHLEVIDTS 27 (90)
Q Consensus 4 ~~~~I~~~l~~~l~~~~v~V~d~S 27 (90)
+.+++.+.|.+-||+..+++.+..
T Consensus 15 D~eKV~~Al~nifp~~~ie~~e~~ 38 (147)
T 2pzz_A 15 DKYKVKKAILNIFPKAKLTFIEKD 38 (147)
T ss_dssp CHHHHHHHHHHHCTTCEEEEEECS
T ss_pred CHHHHHHHHHHhCCCCceEEEecc
Confidence 568999999999999888876444
No 17
>2ljk_A Protein C17ORF37; MIEN1, oncoprotein, signaling protein; NMR {Homo sapiens}
Probab=33.97 E-value=30 Score=22.32 Aligned_cols=33 Identities=27% Similarity=0.284 Sum_probs=25.3
Q ss_pred ccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEE
Q 034588 3 VTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEI 38 (90)
Q Consensus 3 ~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~V 38 (90)
.....+.+.|.+.|+...|...- +.+.-|.|.|
T Consensus 39 ~ra~~laqeLl~tFp~~~V~l~p---g~~G~FeV~v 71 (117)
T 2ljk_A 39 ATYLELASAVKEQYPGIEIESRL---GGTGAFEIEI 71 (117)
T ss_dssp HHHHHHHHHHTTTCSSSCCEEEE---CSSSCEEEET
T ss_pred HHHHHHHHHHHhhCCcceEEEec---CCCceEEEEE
Confidence 35678999999999998777663 3455899986
No 18
>3bej_E Nuclear receptor coactivator 1; FXR, BAR, NR1H4, bIle acid receptor, NHR, alternative splicing, DNA-binding, metal-binding nucleus, repressor; HET: MUF; 1.90A {Homo sapiens} PDB: 1fm9_B* 1k74_B* 1fm6_B* 1p8d_C* 1rdt_B* 1nrl_C* 3ipq_B* 3ips_C* 3ipu_C* 4dm6_E* 4dm8_C* 3kmg_B* 2hfp_B* 1k7l_B*
Probab=33.59 E-value=28 Score=16.88 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=13.1
Q ss_pred CHHHHHHHHHHHHHHh
Q 034588 47 RLLARHRLVNAALEEE 62 (90)
Q Consensus 47 s~v~RHr~Vy~~L~~~ 62 (90)
|+-+||+.+..+|.+-
T Consensus 7 sL~EkHkILHrLLQ~~ 22 (26)
T 3bej_E 7 SLTERHKILHRLLQEG 22 (26)
T ss_pred hHHHHHHHHHHHHHcC
Confidence 5779999999988763
No 19
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=24.55 E-value=46 Score=13.68 Aligned_cols=17 Identities=12% Similarity=-0.042 Sum_probs=13.6
Q ss_pred ccccCCCCHHHHHHHHH
Q 034588 40 SEQFEGKRLLARHRLVN 56 (90)
Q Consensus 40 S~~F~g~s~v~RHr~Vy 56 (90)
...|...+.+.+|+.+.
T Consensus 9 ~k~f~~~~~l~~H~~~h 25 (30)
T 1klr_A 9 EFRSADSSNLKTHIKTK 25 (30)
T ss_dssp SCCCSCSHHHHHHHHHH
T ss_pred CCccCCHHHHHHHHHHH
Confidence 45788899999998754
No 20
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=23.89 E-value=49 Score=13.45 Aligned_cols=17 Identities=18% Similarity=0.264 Sum_probs=13.9
Q ss_pred ccccCCCCHHHHHHHHH
Q 034588 40 SEQFEGKRLLARHRLVN 56 (90)
Q Consensus 40 S~~F~g~s~v~RHr~Vy 56 (90)
...|...+.+.+|..+.
T Consensus 9 ~~~f~~~~~l~~H~~~h 25 (29)
T 2m0e_A 9 DKKFNQVGNLKAHLKIH 25 (29)
T ss_dssp CCCCCTTTHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHh
Confidence 45788999999998765
No 21
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=28.27 E-value=18 Score=15.03 Aligned_cols=18 Identities=22% Similarity=0.172 Sum_probs=13.2
Q ss_pred EEccccCCCCHHHHHHHH
Q 034588 38 IVSEQFEGKRLLARHRLV 55 (90)
Q Consensus 38 VvS~~F~g~s~v~RHr~V 55 (90)
+-...|...+.+.+|..+
T Consensus 7 ~C~k~f~~~~~l~~H~~~ 24 (26)
T 2lvu_A 7 RCGKRFVQSSQLANHIRH 24 (26)
Confidence 345678888888888765
No 22
>1j27_A Hypothetical protein TT1725; structural genomics, hypothetical protein from thermus therm HB8, MAD; 1.70A {Thermus thermophilus} SCOP: d.58.50.1
Probab=21.34 E-value=1.6e+02 Score=18.28 Aligned_cols=38 Identities=5% Similarity=0.001 Sum_probs=26.4
Q ss_pred HHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccc
Q 034588 5 KEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQ 42 (90)
Q Consensus 5 ~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~ 42 (90)
...|.++|++.||.+-.+|-+.-.-.-.-+-+.+||++
T Consensus 26 vksl~~rlr~rFnVSvAEv~~qD~~q~a~igva~Vs~~ 63 (102)
T 1j27_A 26 IKPALERLKARFPVSAARLYGLDAWGYEVVGFTLLGND 63 (102)
T ss_dssp HHHHHHHHHHHSSCEEEEEECTTCSSEEEEEEEEEESC
T ss_pred HHHHHHHHhhcCCeEEEEecCccccceEEEEEEEEECC
Confidence 35688999999999999996332112245677777764
No 23
>2b4v_A RNA editing complex protein MP57; tbret2, TBMP57, terminal uridylyl transferase, editosome, transferase/RNA binding protein complex; 1.80A {Trypanosoma brucei} SCOP: a.160.1.4 d.218.1.10 PDB: 2b51_A* 2b56_A*
Probab=21.02 E-value=1.2e+02 Score=23.59 Aligned_cols=56 Identities=5% Similarity=0.082 Sum_probs=38.1
Q ss_pred HHHHHHHhhcCCCCeEEEEeCC--CC---CcceEEEEEEccccCCCCH---HHHHHHHHHHHHHh
Q 034588 6 EKVESTLTSKLNPSHLEVIDTS--GG---CGAKFEIEIVSEQFEGKRL---LARHRLVNAALEEE 62 (90)
Q Consensus 6 ~~I~~~l~~~l~~~~v~V~d~S--~~---~gshf~i~VvS~~F~g~s~---v~RHr~Vy~~L~~~ 62 (90)
++|+..+++.+|.+.|.+.--+ .| -+|..++.++.+. .+.+. ..|-+.+.+.|+..
T Consensus 46 ~~l~~~v~~~~p~a~v~~FGS~v~~Gl~lp~SDiDl~~~~~~-~~~~~~~~~~~~~~l~~~L~~~ 109 (468)
T 2b4v_A 46 QQLQGLADKWTPDAKVYCCGSMVTYGQMERGSDLDLACMFDD-PYPSHEVQAKRTDKLRTVIKRY 109 (468)
T ss_dssp HHHHHHHHHHCTTCEEEEETHHHHHSSCBTTCCEEEEEECSS-SSCCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCcEEEEeeCchhcCCCCCCCceeEEEecCC-CCccchhhHHHHHHHHHHHHHh
Confidence 5688888889999999998332 12 2688999999873 11111 23444588888876
No 24
>3sgv_B Undecaprenyl pyrophosphate synthase; alpha/beta, transferase; HET: 2BJ; 1.61A {Escherichia coli} PDB: 1jp3_A* 1v7u_A* 1x06_A* 1x07_A* 2e98_A* 2e99_A* 2e9a_A* 2e9c_A* 2e9d_A* 1ueh_A 3sgt_B* 3qas_B* 3sgx_A* 3sh0_B* 3th8_A* 4h2j_A* 4h2m_A* 4h2o_B* 4h38_A* 4h3a_A* ...
Probab=20.40 E-value=66 Score=23.36 Aligned_cols=43 Identities=21% Similarity=0.347 Sum_probs=28.6
Q ss_pred ccCCCCHHHHHHHHHHHHHHhcc-----cccccccCccCCHHHHHHchh
Q 034588 42 QFEGKRLLARHRLVNAALEEEMK-----QIHALSIKKAMTPEQWKQQQE 85 (90)
Q Consensus 42 ~F~g~s~v~RHr~Vy~~L~~~~~-----~IHAls~i~t~tp~Ew~~~~~ 85 (90)
.=.|+++..=|+.=.+.|.+.+. +|-.|+ +.+|+.+-|+.-+.
T Consensus 33 k~rgl~r~~GH~~G~~~l~~i~~~c~~lGI~~lT-lYaFStENwkRp~~ 80 (253)
T 3sgv_B 33 KKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALT-LYAFSSENWNRPAQ 80 (253)
T ss_dssp HHTTCCHHHHHHHHHHHHHHHHHHHHHTTCSEEE-EECC----------
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHcCCCEEE-EEEEchhccCCCHH
Confidence 34689999999998888888875 699999 99999999976543
Done!