Query 034588
Match_columns 90
No_of_seqs 108 out of 1029
Neff 5.8
Searched_HMMs 13730
Date Mon Mar 25 06:47:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034588.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034588hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1v9ja_ d.52.6.1 (A:) BolA-lik 100.0 3.1E-35 2.3E-39 195.2 6.0 84 1-85 28-112 (113)
2 d1ny8a_ d.52.6.1 (A:) Hypothet 100.0 9.6E-33 7E-37 178.9 6.4 82 2-88 5-88 (97)
3 d1ylqa1 d.218.1.5 (A:1-90) Put 97.5 0.00049 3.5E-08 41.9 8.4 73 6-83 2-79 (90)
4 d1ubdc2 g.37.1.1 (C:323-350) Y 75.3 0.16 1.2E-05 24.2 -0.9 16 41-56 10-25 (28)
5 d2pzza1 d.77.1.2 (A:2-134) Hyp 58.7 3.9 0.00028 25.2 3.0 57 4-64 14-71 (133)
6 d1znfa_ g.37.1.1 (A:) XFIN, th 53.7 0.93 6.7E-05 20.9 -0.5 17 40-56 7-23 (26)
7 d2j7ja2 g.37.1.1 (A:29-57) Tra 39.4 4.6 0.00034 19.0 0.7 17 41-57 13-29 (29)
8 d1x6ea2 g.37.1.1 (A:41-66) Zin 38.6 4.9 0.00035 18.4 0.7 17 40-56 9-25 (26)
9 d1sp1a_ g.37.1.1 (A:) Transcri 30.2 7.8 0.00057 17.9 0.7 17 40-56 9-25 (29)
10 d2gu3a1 d.17.1.6 (A:99-161) Un 28.8 24 0.0017 19.1 2.8 21 2-22 1-21 (63)
11 d1cf7b_ a.4.5.17 (B:) Cell cyc 28.4 12 0.00088 21.5 1.5 16 49-64 50-65 (82)
12 d2hjja1 d.50.3.3 (A:10-75) Hyp 26.0 20 0.0015 19.8 2.1 18 20-40 17-34 (66)
13 d1b79a_ a.81.1.1 (A:) N-termin 25.5 18 0.0013 20.3 2.0 16 49-64 36-51 (102)
14 d1s98a_ b.124.1.1 (A:) Fe-S sc 22.6 61 0.0045 17.9 4.5 36 5-40 9-45 (97)
15 d2isya2 a.76.1.1 (A:65-140) Ir 22.5 27 0.002 19.0 2.3 18 47-64 10-27 (76)
16 d2nwua1 d.77.1.2 (A:3-144) Hyp 22.1 51 0.0037 19.9 3.8 57 4-64 13-72 (142)
17 d2id1a1 d.218.1.12 (A:1-120) H 21.7 76 0.0055 18.6 5.4 39 3-41 1-43 (120)
No 1
>d1v9ja_ d.52.6.1 (A:) BolA-like protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=100.00 E-value=3.1e-35 Score=195.16 Aligned_cols=84 Identities=44% Similarity=0.769 Sum_probs=80.6
Q ss_pred CcccHHHHHHHHhhcCCCCeEEEEeCCC-CCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcccccccccCccCCHHH
Q 034588 1 MGVTKEKVESTLTSKLNPSHLEVIDTSG-GCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQ 79 (90)
Q Consensus 1 m~~~~~~I~~~l~~~l~~~~v~V~d~S~-~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~IHAls~i~t~tp~E 79 (90)
|++++++|+++|+++|+|.+|+|+|+|. +||+||+|+|||+.|.|||+|+|||+||++|+++|+.||||+ |+|+||+|
T Consensus 28 m~~~~e~I~~kL~~~~~~~~leV~D~S~~h~G~Hf~i~IvS~~F~g~s~v~rHr~Vy~~L~~ei~~iHAls-i~t~Tp~E 106 (113)
T d1v9ja_ 28 MELSADYLREKLRQDLEAEHVEVEDTTLNRCATSFRVLVVSAKFEGKPLLQRHRLVNECLAEELPHIHAFE-QKTLTPEQ 106 (113)
T ss_dssp SSSCHHHHHHHHHHHHTCSEEEEEECCSSSSCCCEEEEEECSHHHHSCHHHHHHHHHHHTTTTGGGCSSEE-EEEECHHH
T ss_pred CcccHHHHHHHHHhhCCCcEEEEEecCCCCCCceEEEEEEeccccCCchhHHHHhHHHHHHHHHhcceeeE-EEeCCHHH
Confidence 7888999999999999999999999994 689999999999999999999999999999999999999999 99999999
Q ss_pred HHHchh
Q 034588 80 WKQQQE 85 (90)
Q Consensus 80 w~~~~~ 85 (90)
|+++++
T Consensus 107 w~~~~~ 112 (113)
T d1v9ja_ 107 WTRQRR 112 (113)
T ss_dssp HHHSCC
T ss_pred HHHhhc
Confidence 998764
No 2
>d1ny8a_ d.52.6.1 (A:) Hypothetical protein YrbA {Escherichia coli [TaxId: 562]}
Probab=99.97 E-value=9.6e-33 Score=178.86 Aligned_cols=82 Identities=29% Similarity=0.515 Sum_probs=76.6
Q ss_pred cccHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcc--cccccccCccCCHHH
Q 034588 2 GVTKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMK--QIHALSIKKAMTPEQ 79 (90)
Q Consensus 2 ~~~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~--~IHAls~i~t~tp~E 79 (90)
+|..++|+++|.++||++.|+|. |+|+||+|.|||+.|+|||+|+|||+||++|+++|+ .||||+ |+|+||+|
T Consensus 5 ~M~~~eI~~~L~~~l~~~~v~V~----g~g~hf~i~IvS~~F~g~s~v~RHr~Vy~~L~~~i~~g~IHAls-ikt~Tp~E 79 (97)
T d1ny8a_ 5 PMENNEIQSVLMNALSLQEVHVS----GDGSHFQVIAVGELFDGMSRVKKQQTVYGPLMEYIADNRIHAVS-IKAYTPAE 79 (97)
T ss_dssp CCCCHHHHHHHHHHHCCSEEEEE----ESSSEEEEEEESSTTSSSCHHHHHHHHHTTTHHHHHHHTTSEEE-EEECCHHH
T ss_pred cCCHHHHHHHHHhhCCCcEEEEe----CCCcEEEEEEEcHHhCCCCHHHHHHHHHHHHHHHHcCCCceeeE-eEeCCHHH
Confidence 68889999999999999999997 789999999999999999999999999999999997 599999 99999999
Q ss_pred HHHchhhhh
Q 034588 80 WKQQQESNA 88 (90)
Q Consensus 80 w~~~~~~~~ 88 (90)
|++.++-+.
T Consensus 80 w~~~kk~~~ 88 (97)
T d1ny8a_ 80 WARDRKLNG 88 (97)
T ss_dssp HHHHHHTTS
T ss_pred HHHhhhhhh
Confidence 998776443
No 3
>d1ylqa1 d.218.1.5 (A:1-90) Putative nucleotidyltransferase AF0614 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=97.47 E-value=0.00049 Score=41.90 Aligned_cols=73 Identities=12% Similarity=0.281 Sum_probs=56.1
Q ss_pred HHHHHHHhhcCCCCeEEEEeC--CC--C-CcceEEEEEEccccCCCCHHHHHHHHHHHHHHhcccccccccCccCCHHHH
Q 034588 6 EKVESTLTSKLNPSHLEVIDT--SG--G-CGAKFEIEIVSEQFEGKRLLARHRLVNAALEEEMKQIHALSIKKAMTPEQW 80 (90)
Q Consensus 6 ~~I~~~l~~~l~~~~v~V~d~--S~--~-~gshf~i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~~IHAls~i~t~tp~Ew 80 (90)
++|++.+++.++++.|-+.-- .| . ++|.+.+.||++.+. +..+|.+.+..++..... +-+. +..+||+||
T Consensus 2 ~~i~e~ik~~~~~~kViLFGS~ArG~~~~~~SDiDllVV~~~~~--~~~~r~~~~~~~~~~~~~--~pvd-~~v~tpeef 76 (90)
T d1ylqa1 2 KEIKEITKKDVQDAEIYLYGSVVEGDYSIGLSDIDVAIVSDVFE--DRNRKLEFFGKITKKFFD--SPFE-FHILTKKEW 76 (90)
T ss_dssp HHHHHHHHHHCTTCEEEEESHHHHCCSSSCCCSEEEEEECGGGG--SHHHHHHHHHHHHHHTTT--CSEE-EEEECHHHH
T ss_pred HHHHHHHHHHCCCcEEEEECccccCCCCCCCCccEEEEEeCCCC--CHHHHHHHHHHHHhhccC--CCeE-EEEcCHHHH
Confidence 579999999999999988721 01 1 358999999999996 468999998888877543 2356 666899999
Q ss_pred HHc
Q 034588 81 KQQ 83 (90)
Q Consensus 81 ~~~ 83 (90)
+.-
T Consensus 77 e~~ 79 (90)
T d1ylqa1 77 KMS 79 (90)
T ss_dssp HHH
T ss_pred HHH
Confidence 853
No 4
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}
Probab=75.27 E-value=0.16 Score=24.24 Aligned_cols=16 Identities=38% Similarity=0.573 Sum_probs=13.6
Q ss_pred cccCCCCHHHHHHHHH
Q 034588 41 EQFEGKRLLARHRLVN 56 (90)
Q Consensus 41 ~~F~g~s~v~RHr~Vy 56 (90)
..|..-+.++||++|.
T Consensus 10 kaf~essklkrh~lvh 25 (28)
T d1ubdc2 10 KAFVESSKLKRHQLVH 25 (28)
T ss_dssp CEESSHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHhhcc
Confidence 4688889999999984
No 5
>d2pzza1 d.77.1.2 (A:2-134) Hypotheical protein MJ1564 {Methanocaldococcus jannaschii [TaxId: 2190]}
Probab=58.72 E-value=3.9 Score=25.23 Aligned_cols=57 Identities=19% Similarity=0.222 Sum_probs=37.2
Q ss_pred cHHHHHHHHhhcCCCCeEEEEeCCCCCcceEE-EEEEccccCCCCHHHHHHHHHHHHHHhcc
Q 034588 4 TKEKVESTLTSKLNPSHLEVIDTSGGCGAKFE-IEIVSEQFEGKRLLARHRLVNAALEEEMK 64 (90)
Q Consensus 4 ~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~-i~VvS~~F~g~s~v~RHr~Vy~~L~~~~~ 64 (90)
+.+++.+.|.+-||+..+++.+..+ ||. +.-.+..++....+=|.+.+.++..++|.
T Consensus 14 D~ekV~~Ai~nifPd~~~~~~e~~~----~~~~~~~~~~sl~~~~~~lr~~~ildtar~~l~ 71 (133)
T d2pzza1 14 DKYKVKKAILNIFPKAKLTFIEKDN----EFGEWEGKTKSVEKLKELLRSQSILDAARMVLE 71 (133)
T ss_dssp CHHHHHHHHHHHCTTCEEEEEECST----TCEEEEEEESCCHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCCcccccccCC----ccceeeechhhHHHHHHHHHHhhhHHHHHHHHH
Confidence 5789999999999999998875432 443 33334455554444455556666666664
No 6
>d1znfa_ g.37.1.1 (A:) XFIN, third domain {Xenopus laevis [TaxId: 8355]}
Probab=53.71 E-value=0.93 Score=20.89 Aligned_cols=17 Identities=35% Similarity=0.522 Sum_probs=14.2
Q ss_pred ccccCCCCHHHHHHHHH
Q 034588 40 SEQFEGKRLLARHRLVN 56 (90)
Q Consensus 40 S~~F~g~s~v~RHr~Vy 56 (90)
-.+|-.+|.+.|||.|.
T Consensus 7 ersfveksalsrhqrvh 23 (26)
T d1znfa_ 7 ERSFVEKSALSRHQRVH 23 (26)
T ss_dssp CCBCSSHHHHHHHGGGT
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 35789999999999875
No 7
>d2j7ja2 g.37.1.1 (A:29-57) Transcription factor IIIA, TFIIIA {Xenopus laevis [TaxId: 8355]}
Probab=39.44 E-value=4.6 Score=18.97 Aligned_cols=17 Identities=35% Similarity=0.434 Sum_probs=13.2
Q ss_pred cccCCCCHHHHHHHHHH
Q 034588 41 EQFEGKRLLARHRLVNA 57 (90)
Q Consensus 41 ~~F~g~s~v~RHr~Vy~ 57 (90)
..|.--|+++||..|.+
T Consensus 13 k~fs~ps~lkrhekvha 29 (29)
T d2j7ja2 13 KRFSLPSRLKRHEKVHA 29 (29)
T ss_dssp CEESSHHHHHHHHHHHH
T ss_pred ccccCHHHHhhhhhccC
Confidence 35677899999998753
No 8
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.58 E-value=4.9 Score=18.43 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=14.5
Q ss_pred ccccCCCCHHHHHHHHH
Q 034588 40 SEQFEGKRLLARHRLVN 56 (90)
Q Consensus 40 S~~F~g~s~v~RHr~Vy 56 (90)
...|...|.|.+||.|.
T Consensus 9 gK~F~~~s~L~~HqriH 25 (26)
T d1x6ea2 9 GKAFSQNSGLINHQRIH 25 (26)
T ss_dssp CCEESSHHHHHHHHHHH
T ss_pred cCeeccCcccccCccCC
Confidence 45789999999999885
No 9
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=30.18 E-value=7.8 Score=17.87 Aligned_cols=17 Identities=18% Similarity=0.305 Sum_probs=14.5
Q ss_pred ccccCCCCHHHHHHHHH
Q 034588 40 SEQFEGKRLLARHRLVN 56 (90)
Q Consensus 40 S~~F~g~s~v~RHr~Vy 56 (90)
.-.|...+-|.||+.+.
T Consensus 9 ~k~F~~~s~L~~H~r~H 25 (29)
T d1sp1a_ 9 PKRFMRSDHLSKHIKTH 25 (29)
T ss_dssp TCCCSCSHHHHHHHHGG
T ss_pred CCeecchHHhhhhcCcc
Confidence 46799999999999875
No 10
>d2gu3a1 d.17.1.6 (A:99-161) Uncharacterized protein YpmB {Bacillus subtilis [TaxId: 1423]}
Probab=28.85 E-value=24 Score=19.09 Aligned_cols=21 Identities=14% Similarity=0.251 Sum_probs=18.2
Q ss_pred cccHHHHHHHHhhcCCCCeEE
Q 034588 2 GVTKEKVESTLTSKLNPSHLE 22 (90)
Q Consensus 2 ~~~~~~I~~~l~~~l~~~~v~ 22 (90)
|+++++.++.+++.-+|..+.
T Consensus 1 GISe~~a~~~v~~e~~~~ki~ 21 (63)
T d2gu3a1 1 GISEDKAAKIIKDEGLVSKQK 21 (63)
T ss_dssp SCCHHHHHHHHHHTTCCSEEE
T ss_pred CCCHHHHHHHHHhhcCcceee
Confidence 689999999999999987653
No 11
>d1cf7b_ a.4.5.17 (B:) Cell cycle transcription factor DP-2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=28.41 E-value=12 Score=21.54 Aligned_cols=16 Identities=31% Similarity=0.138 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHhcc
Q 034588 49 LARHRLVNAALEEEMK 64 (90)
Q Consensus 49 v~RHr~Vy~~L~~~~~ 64 (90)
=+--|.||++|.=.|+
T Consensus 50 KNIRRRVYDALNVLmA 65 (82)
T d1cf7b_ 50 KNIRRRVYDALNVLMA 65 (82)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHH
Confidence 3456899999998876
No 12
>d2hjja1 d.50.3.3 (A:10-75) Hypothetical protein YkfF {Escherichia coli [TaxId: 562]}
Probab=26.01 E-value=20 Score=19.76 Aligned_cols=18 Identities=17% Similarity=0.436 Sum_probs=13.1
Q ss_pred eEEEEeCCCCCcceEEEEEEc
Q 034588 20 HLEVIDTSGGCGAKFEIEIVS 40 (90)
Q Consensus 20 ~v~V~d~S~~~gshf~i~VvS 40 (90)
.|-|+|+ .|+||+++|--
T Consensus 17 NV~IEDD---qg~HFRlVvR~ 34 (66)
T d2hjja1 17 NITLEDD---QGSHFRLVVRD 34 (66)
T ss_dssp TEEEESC---SSSCCEEEEEC
T ss_pred ceeeecC---CCCeEEEEEEc
Confidence 4667754 47899999974
No 13
>d1b79a_ a.81.1.1 (A:) N-terminal domain of DnaB helicase {Escherichia coli [TaxId: 562]}
Probab=25.55 E-value=18 Score=20.35 Aligned_cols=16 Identities=13% Similarity=0.152 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHhcc
Q 034588 49 LARHRLVNAALEEEMK 64 (90)
Q Consensus 49 v~RHr~Vy~~L~~~~~ 64 (90)
..+||.||+++.+...
T Consensus 36 ~~~h~~If~ai~~l~~ 51 (102)
T d1b79a_ 36 TRPHRHIFTEMARLQE 51 (102)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhc
Confidence 4789999999999886
No 14
>d1s98a_ b.124.1.1 (A:) Fe-S scaffold protein IscA (YfhF) {Escherichia coli [TaxId: 562]}
Probab=22.56 E-value=61 Score=17.86 Aligned_cols=36 Identities=22% Similarity=0.402 Sum_probs=24.0
Q ss_pred HHHHHHHHhhcCCCCeEEEEeCCCCC-cceEEEEEEc
Q 034588 5 KEKVESTLTSKLNPSHLEVIDTSGGC-GAKFEIEIVS 40 (90)
Q Consensus 5 ~~~I~~~l~~~l~~~~v~V~d~S~~~-gshf~i~VvS 40 (90)
.++|++.|++.=+...|.|.=.++|| |-.|.+..+.
T Consensus 9 ~~~i~~ll~~~~~~~~lRi~v~~gGCsG~~Y~l~~~~ 45 (97)
T d1s98a_ 9 AARVNTFLANRGKGFGLRLGVRTSGCSGMAYVLEFVD 45 (97)
T ss_dssp HHHHHHHHHTTCCCCEEEEEEEEETTTEEEEEEEEES
T ss_pred HHHHHHHHHhCCCCcEEEEEEEcCCCCcceEEeeecc
Confidence 36677778765445567776666666 6788887664
No 15
>d2isya2 a.76.1.1 (A:65-140) Iron-dependent regulator {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=22.51 E-value=27 Score=19.02 Aligned_cols=18 Identities=22% Similarity=0.451 Sum_probs=15.3
Q ss_pred CHHHHHHHHHHHHHHhcc
Q 034588 47 RLLARHRLVNAALEEEMK 64 (90)
Q Consensus 47 s~v~RHr~Vy~~L~~~~~ 64 (90)
..+.|||++...|.+.+.
T Consensus 10 ~i~rrHrlle~fL~~~lg 27 (76)
T d2isya2 10 AVMRKHRLAERLLVDVIG 27 (76)
T ss_dssp HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcC
Confidence 468999999999988765
No 16
>d2nwua1 d.77.1.2 (A:3-144) Hypothetical protein SSo1042 {Sulfolobus solfataricus [TaxId: 2287]}
Probab=22.11 E-value=51 Score=19.91 Aligned_cols=57 Identities=9% Similarity=0.048 Sum_probs=31.0
Q ss_pred cHHHHHHHHhhcCCCCeEEEEeCCCCCcceEEEEEEccccCCCCH---HHHHHHHHHHHHHhcc
Q 034588 4 TKEKVESTLTSKLNPSHLEVIDTSGGCGAKFEIEIVSEQFEGKRL---LARHRLVNAALEEEMK 64 (90)
Q Consensus 4 ~~~~I~~~l~~~l~~~~v~V~d~S~~~gshf~i~VvS~~F~g~s~---v~RHr~Vy~~L~~~~~ 64 (90)
+.+++.+.|.+-||...++.. ..+.--.+.+.+.....+.. +=|-+.+.+++.+.|.
T Consensus 13 D~eKV~~Ai~nlFP~~~~e~~----~~~~~~~~~~~~~~~~sl~~f~~~lr~q~ilDta~~~l~ 72 (142)
T d2nwua1 13 DVNKVLSAISNFFDFEKMNTR----KEGIIDILVLEARTLKSLLKFHRVLRNERILDSARKYLM 72 (142)
T ss_dssp CHHHHHHHHHTTCCCSEEEC-------CCCEEEEEEESSGGGGHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHhCCCcccccc----cCCCcceEEEEecChhHHHHHHHHHHhcchHHHHHHHHH
Confidence 578999999999999877543 11222223444444444333 2222344555555554
No 17
>d2id1a1 d.218.1.12 (A:1-120) Hypothetical protein CV0518 {Chromobacterium violaceum [TaxId: 536]}
Probab=21.68 E-value=76 Score=18.59 Aligned_cols=39 Identities=13% Similarity=0.041 Sum_probs=22.2
Q ss_pred ccHHHHHHHHhhcC---CCCeEEEEeCCCCC-cceEEEEEEcc
Q 034588 3 VTKEKVESTLTSKL---NPSHLEVIDTSGGC-GAKFEIEIVSE 41 (90)
Q Consensus 3 ~~~~~I~~~l~~~l---~~~~v~V~d~S~~~-gshf~i~VvS~ 41 (90)
|..+++.+.+.+.+ ....+.|.|.++.+ -+.|-|+..+.
T Consensus 1 m~~~~l~~~i~~~l~d~Ka~DI~vldv~~~~~~~D~~VI~Tg~ 43 (120)
T d2id1a1 1 MEIQEISKLAIEALEDIKGKDIIELDTSKLTSLFQRMIVATGD 43 (120)
T ss_dssp CCHHHHHHHHHHHHHHTTCEEEEEEEGGGTCSSCSEEEEEECS
T ss_pred CCHHHHHHHHHHHHHHcCCCCeEEEECCCCCccccEEEEEEec
Confidence 34455555544433 56789999988533 24555555443
Done!