BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>034596
MKDKRGTGSGDSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVI
VTVKEHAEFYAQMMVRGGLRSTIEPDSSTL

High Scoring Gene Products

Symbol, full name Information P value
AT1G68660 protein from Arabidopsis thaliana 4.7e-09

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  034596
        (90 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2026869 - symbol:AT1G68660 "AT1G68660" species...   134  4.7e-09   1


>TAIR|locus:2026869 [details] [associations]
            symbol:AT1G68660 "AT1G68660" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0030163
            "protein catabolic process" evidence=IEA] InterPro:IPR003769
            Pfam:PF02617 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0006508
            GO:GO:0030163 EMBL:AC008075 GO:GO:0008233 KO:K06891
            Gene3D:3.30.1390.10 InterPro:IPR014719 SUPFAM:SSF54736
            UniGene:At.66838 EMBL:AF336921 EMBL:AY045615 EMBL:AY120696
            EMBL:AY085795 IPI:IPI00522034 PIR:B96711 RefSeq:NP_564937.1
            UniGene:At.24277 HSSP:P75832 ProteinModelPortal:Q9SX29 SMR:Q9SX29
            STRING:Q9SX29 PRIDE:Q9SX29 EnsemblPlants:AT1G68660.1 GeneID:843196
            KEGG:ath:AT1G68660 TAIR:At1g68660 HOGENOM:HOG000247050
            InParanoid:Q9SX29 OMA:VVIICAQ PhylomeDB:Q9SX29
            ProtClustDB:CLSN2917405 ArrayExpress:Q9SX29 Genevestigator:Q9SX29
            Uniprot:Q9SX29
        Length = 159

 Score = 134 (52.2 bits), Expect = 4.7e-09, P = 4.7e-09
 Identities = 30/75 (40%), Positives = 49/75 (65%)

Query:    13 YRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQ 72
             YRV+L +D  +  + V +VL +V+P +T D+A  +  E+  +G+A+VIV  +  AE +  
Sbjct:    82 YRVILHNDNFNKREYVVQVLMKVIPGMTVDNAVNIMQEAHINGLAVVIVCAQADAEQHC- 140

Query:    73 MMVRG-GLRSTIEPD 86
             M +RG GL S++EPD
Sbjct:   141 MQLRGNGLLSSVEPD 155


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.317   0.133   0.369    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       90        90   0.00091  102 3  11 22  0.49    29
                                                     29  0.39    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  453 (48 KB)
  Total size of DFA:  87 KB (2067 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  10.65u 0.18s 10.83t   Elapsed:  00:00:01
  Total cpu time:  10.65u 0.18s 10.83t   Elapsed:  00:00:01
  Start:  Thu May  9 21:04:08 2013   End:  Thu May  9 21:04:09 2013

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