BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034596
(90 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R12|A Chain A, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.75 A Resolution
pdb|3R12|B Chain B, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.75 A Resolution
pdb|3R13|A Chain A, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.83 A Resolution
pdb|3R13|B Chain B, Crystal Structure Of A Deoxyribose-Phosphate Aldolase
(Tm_1559) From Thermotoga Maritima At 1.83 A Resolution
Length = 260
Score = 27.3 bits (59), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 3/31 (9%)
Query: 37 PSVTPDDARKLFHESRE---HGMAIVIVTVK 64
P TPDD +KL E+RE HG+ + VK
Sbjct: 54 PFATPDDIKKLCLEARENRFHGVCVNPCYVK 84
>pdb|1QWJ|A Chain A, The Crystal Structure Of Murine Cmp-5-N-Acetylneuraminic
Acid Synthetase
pdb|1QWJ|B Chain B, The Crystal Structure Of Murine Cmp-5-N-Acetylneuraminic
Acid Synthetase
pdb|1QWJ|C Chain C, The Crystal Structure Of Murine Cmp-5-N-Acetylneuraminic
Acid Synthetase
pdb|1QWJ|D Chain D, The Crystal Structure Of Murine Cmp-5-N-Acetylneuraminic
Acid Synthetase
Length = 229
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 23 HSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRGGLRST 82
H+E + + P + P D +K+ RE G V V+ H +++ ++ G+R
Sbjct: 92 HNEVDIVGNIQATSPCLHPTDLQKVAEMIREEGYDSVFSVVRRHQFRWSE--IQKGVREV 149
Query: 83 IEP 85
EP
Sbjct: 150 TEP 152
>pdb|2RJT|A Chain A, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|D Chain D, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|C Chain C, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
pdb|2RJT|B Chain B, Crystal Structure Analysis Of A Surface Entropy Reduction
Mutant Of S. Pneumoniae Fabf
Length = 428
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 2 KDKRGTGSGDSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREH 54
KD+ G G+ +L+++ H+EK A +L +VV DA +H + H
Sbjct: 243 KDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDA---YHMTSPH 292
>pdb|2ALM|A Chain A, Crystal Structure Analysis Of A Mutant Beta-Ketoacyl-[acyl
Carrier Protein] Synthase Ii From Streptococcus
Pneumoniae
Length = 431
Score = 25.8 bits (55), Expect = 6.2, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 2 KDKRGTGSGDSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREH 54
KD+ G G+ +L+++ H+EK A +L +VV DA +H + H
Sbjct: 244 KDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDA---YHMTSPH 293
>pdb|2ZOS|A Chain A, Crystal Structure Of Mannosyl-3-Phosphoglycerate
Phosphatase From Pyrococcus Horikoshii
pdb|2ZOS|B Chain B, Crystal Structure Of Mannosyl-3-Phosphoglycerate
Phosphatase From Pyrococcus Horikoshii
Length = 249
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 35 VVPSVTPDDARKLFHESREHGMAIVIVTVKEHAE 68
++P PD A+ + E ++ G I+ + K AE
Sbjct: 13 LIPGYEPDPAKPIIEELKDXGFEIIFNSSKTRAE 46
>pdb|1OX0|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae
pdb|1OXH|A Chain A, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|B Chain B, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|C Chain C, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
pdb|1OXH|D Chain D, The Crystal Structure Of Beta-Ketoacyl-[acyl Carrier
Protein] Synthase Ii From Streptococcus Pneumoniae,
Triclinic Form
Length = 430
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Query: 2 KDKRGTGSGDSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREH 54
KD+ G G+ +L+++ H+EK A +L +VV DA +H + H
Sbjct: 243 KDRNGFVMGEGSGMLVLESLEHAEKRGATILAEVVGYGNTCDA---YHMTSPH 292
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH5|A Chain A, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
Length = 260
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 24/56 (42%), Gaps = 11/56 (19%)
Query: 11 DSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEH 66
D+Y L+IDD +V V PQ K+ +R+HG+ + V H
Sbjct: 11 DNYMYLVIDDETKEAAIVDPVQPQ-----------KVVDAARKHGVKLTTVLTTHH 55
>pdb|1WZC|A Chain A, Crystal Structure Of Pyrococcus Horikoshii Mannosyl-3-
Phosphoglycerate Phosphatase Complexed With Mg2+ And
Phosphate
pdb|1WZC|B Chain B, Crystal Structure Of Pyrococcus Horikoshii Mannosyl-3-
Phosphoglycerate Phosphatase Complexed With Mg2+ And
Phosphate
Length = 249
Score = 25.8 bits (55), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 35 VVPSVTPDDARKLFHESREHGMAIVIVTVKEHAE 68
++P PD A+ + E ++ G I+ + K AE
Sbjct: 13 LIPGYEPDPAKPIIEELKDMGFEIIFNSSKTRAE 46
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.133 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,652,528
Number of Sequences: 62578
Number of extensions: 88612
Number of successful extensions: 254
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 10
length of query: 90
length of database: 14,973,337
effective HSP length: 57
effective length of query: 33
effective length of database: 11,406,391
effective search space: 376410903
effective search space used: 376410903
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)