BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034596
(90 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q7NML9|CLPS_GLOVI ATP-dependent Clp protease adapter protein ClpS OS=Gloeobacter
violaceus (strain PCC 7421) GN=clpS PE=3 SV=1
Length = 93
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 45/75 (60%)
Query: 13 YRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQ 72
Y+VLL +D V +VL + +P + P ARK+ E+ G+A+VIV EHAEFY++
Sbjct: 19 YKVLLHNDDHTPMNYVIEVLMKTIPKMQPSKARKIMLEAHNGGVAVVIVCALEHAEFYSE 78
Query: 73 MMVRGGLRSTIEPDS 87
+ R L ST EPD
Sbjct: 79 SLNRHNLTSTYEPDC 93
>sp|Q31QE7|CLPS_SYNE7 ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus
elongatus (strain PCC 7942) GN=clpS PE=3 SV=1
Length = 95
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 42/74 (56%)
Query: 13 YRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQ 72
YRVLL +D + + V VL Q VPS+T A + E+ +G +VI E AEFY +
Sbjct: 21 YRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEPAEFYCE 80
Query: 73 MMVRGGLRSTIEPD 86
+ GL S+IEPD
Sbjct: 81 QLKSHGLSSSIEPD 94
>sp|Q3AUR5|CLPS_SYNS9 ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus
sp. (strain CC9902) GN=clpS PE=3 SV=1
Length = 104
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 13 YRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQ 72
Y+VLL +D +S + V L QVVP ++ DA + E+ G+ +VIV E AEFY +
Sbjct: 30 YKVLLHNDPVNSMEYVMTTLRQVVPQLSEQDAMAVMLEAHNTGVGLVIVCDIEPAEFYCE 89
Query: 73 MMVRGGLRSTIEPD 86
+ GL S+IEP+
Sbjct: 90 TLKSKGLTSSIEPE 103
>sp|A2BYM5|CLPS_PROM5 ATP-dependent Clp protease adapter protein ClpS OS=Prochlorococcus
marinus (strain MIT 9515) GN=clpS PE=3 SV=1
Length = 105
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 45/74 (60%)
Query: 13 YRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQ 72
Y+VLL +D +S + + L +VVP ++ DA + E+ +G+ +VIV E AEFY++
Sbjct: 31 YKVLLHNDPVNSMEYITIALREVVPQLSEQDAIAIMLEAHNNGVGLVIVCDLEPAEFYSE 90
Query: 73 MMVRGGLRSTIEPD 86
+ G+ S+IE D
Sbjct: 91 SLKSKGISSSIEKD 104
>sp|Q8DJY3|CLPS_THEEB ATP-dependent Clp protease adapter protein ClpS
OS=Thermosynechococcus elongatus (strain BP-1) GN=clpS
PE=3 SV=1
Length = 94
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 48/76 (63%), Gaps = 1/76 (1%)
Query: 12 SYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYA 71
+Y+V++++D ++ + VA L + +P++T D A +L ++ G AIV V +E AE Y
Sbjct: 19 NYKVIVLNDDFNTFQHVAACLMKYIPNMTSDRAWELTNQVHYEGQAIVWVGPQEQAELYH 78
Query: 72 QMMVRGGLR-STIEPD 86
+ ++R GL + +EP+
Sbjct: 79 EQLLRAGLTMAPLEPE 94
>sp|Q8YZQ3|CLPS_NOSS1 ATP-dependent Clp protease adapter protein ClpS OS=Nostoc sp.
(strain PCC 7120 / UTEX 2576) GN=clpS PE=3 SV=2
Length = 97
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 12 SYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYA 71
+Y+V++++D ++ + VA+ L + +P +T D A L ++ G AIV V +E AE Y
Sbjct: 22 NYKVIVLNDDFNTFQHVAECLVKYIPGMTGDLAWDLTNQVHYEGQAIVWVGPQEPAELYH 81
Query: 72 QMMVRGGL 79
Q + R GL
Sbjct: 82 QQLRRAGL 89
>sp|Q5N3U1|CLPS_SYNP6 ATP-dependent Clp protease adapter protein ClpS OS=Synechococcus
sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1)
GN=clpS PE=3 SV=1
Length = 91
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/69 (37%), Positives = 36/69 (52%)
Query: 13 YRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQ 72
YRVLL +D + + V VL Q VPS+T A + E+ +G +VI E AEFY +
Sbjct: 21 YRVLLHNDDFNPMEYVVMVLMQTVPSLTQPQAVDIMMEAHTNGTGLVITCDIEPAEFYCE 80
Query: 73 MMVRGGLRS 81
+ GL
Sbjct: 81 QLKSHGLEQ 89
>sp|P73634|CLPS_SYNY3 ATP-dependent Clp protease adapter protein ClpS OS=Synechocystis
sp. (strain PCC 6803 / Kazusa) GN=clpS PE=3 SV=1
Length = 98
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 42/68 (61%)
Query: 12 SYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYA 71
+++V++++D ++ + V+ L + +P +T D A +L ++ G+AIV V +E AE Y
Sbjct: 23 NFKVIVLNDDFNTFQHVSDCLLKYIPGMTGDRAWELTNQVHFDGLAIVWVGPQEQAELYH 82
Query: 72 QMMVRGGL 79
Q + R GL
Sbjct: 83 QQLRREGL 90
>sp|Q0BT18|SYC_GRABC Cysteine--tRNA ligase OS=Granulibacter bethesdensis (strain ATCC
BAA-1260 / CGDNIH1) GN=cysS PE=3 SV=1
Length = 470
Score = 34.7 bits (78), Expect = 0.17, Method: Composition-based stats.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 5/67 (7%)
Query: 27 LVAKVLPQVVPSVT-----PDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRGGLRS 81
++A+VL ++ P VT D K+ +RE G++I +T + A+F+A M G L
Sbjct: 67 VLARVLRRLYPRVTYARNITDVDDKINARARESGVSIDEITARTTADFHADMASLGNLPP 126
Query: 82 TIEPDSS 88
IEP ++
Sbjct: 127 DIEPRAT 133
>sp|B6ISG4|SYC_RHOCS Cysteine--tRNA ligase OS=Rhodospirillum centenum (strain ATCC 51521
/ SW) GN=cysS PE=3 SV=1
Length = 456
Score = 33.5 bits (75), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
Query: 27 LVAKVLPQVVPSVT-----PDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRGGLRS 81
L+A++L + P VT D K+ S+ G I VT + A+F+A M G LR
Sbjct: 50 LLARLLKHLYPRVTYARNITDVDDKIIDRSQRSGEPIDGVTARTTAQFHADMDALGLLRP 109
Query: 82 TIEPDSST 89
IEP ++T
Sbjct: 110 DIEPRATT 117
>sp|C1KWK5|CCA_LISMC CCA-adding enzyme OS=Listeria monocytogenes serotype 4b (strain
CLIP80459) GN=cca PE=3 SV=1
Length = 393
Score = 31.2 bits (69), Expect = 2.2, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 35 VVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVR 76
+ S P++ +++F S + G+A VTV+E+ EFY R
Sbjct: 43 IATSAFPEEVKEIFQTSYDTGIAHGTVTVRENNEFYEVTTFR 84
>sp|Q71YB0|CCA_LISMF CCA-adding enzyme OS=Listeria monocytogenes serotype 4b (strain
F2365) GN=cca PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 35 VVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVR 76
+ S P++ +++F S + G+A VTV+E+ EFY R
Sbjct: 43 IATSAFPEEVKEIFQTSYDTGIAHGTVTVRENNEFYEVTTFR 84
>sp|B8DC21|CCA_LISMH CCA-adding enzyme OS=Listeria monocytogenes serotype 4a (strain
HCC23) GN=cca PE=3 SV=1
Length = 393
Score = 30.8 bits (68), Expect = 2.4, Method: Composition-based stats.
Identities = 14/42 (33%), Positives = 24/42 (57%)
Query: 35 VVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVR 76
+ S P++ +++F S + G+A VTV+E+ EFY R
Sbjct: 43 IATSAFPEEVKEIFQTSYDTGIAHGTVTVRENNEFYEVTTFR 84
>sp|Q8Y5Z8|CCA_LISMO CCA-adding enzyme OS=Listeria monocytogenes serovar 1/2a (strain
ATCC BAA-679 / EGD-e) GN=cca PE=3 SV=1
Length = 393
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 35 VVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVR 76
+ S P++ +++F + + G+A VTV+E+ EFY R
Sbjct: 43 IATSAFPEEVKEIFQSTYDTGIAHGTVTVRENNEFYEVTTFR 84
>sp|A8EV91|HTPX_ARCB4 Protease HtpX homolog OS=Arcobacter butzleri (strain RM4018)
GN=htpX PE=3 SV=1
Length = 283
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 13 YRVLLIDDTRH-----SEKLVAKV-LPQVVPSVTPDDARKLFHESREHGMAIVIVTV 63
Y + +DDT+H ++KL K LP + PD F R H A V VT+
Sbjct: 56 YNAIPLDDTKHPVYRITQKLTQKANLPMPKVYLIPDHTPNAFATGRNHEYAAVAVTI 112
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.133 0.369
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,646,288
Number of Sequences: 539616
Number of extensions: 1152140
Number of successful extensions: 3021
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 3006
Number of HSP's gapped (non-prelim): 17
length of query: 90
length of database: 191,569,459
effective HSP length: 60
effective length of query: 30
effective length of database: 159,192,499
effective search space: 4775774970
effective search space used: 4775774970
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)