Query 034596
Match_columns 90
No_of_seqs 106 out of 686
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 06:55:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034596.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034596hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dnj_A ATP-dependent CLP prote 100.0 6.3E-38 2.1E-42 200.8 10.4 78 8-86 2-85 (85)
2 2w9r_A YLJA, ATP-dependent CLP 100.0 9.9E-37 3.4E-41 202.5 10.8 83 4-87 19-107 (108)
3 3o1f_A ATP-dependent CLP prote 100.0 4.7E-36 1.6E-40 190.6 10.9 75 11-86 1-81 (81)
4 1x60_A Sporulation-specific N- 91.0 0.9 3.1E-05 26.4 6.0 48 39-86 18-78 (79)
5 1ctf_A Ribosomal protein L7/L1 84.0 5.3 0.00018 24.2 8.7 68 11-83 6-73 (74)
6 2ftc_E L12MT, MRP-L12, 39S rib 78.2 8.5 0.00029 25.8 6.4 72 10-84 66-137 (137)
7 1uta_A FTSN, MSGA, cell divisi 77.3 2.1 7.2E-05 25.1 2.9 47 39-85 18-77 (81)
8 2zjq_5 50S ribosomal protein L 76.8 11 0.00037 24.9 6.5 67 11-83 55-121 (122)
9 3o6p_A Peptide ABC transporter 76.1 14 0.00048 24.7 7.2 49 38-86 77-136 (229)
10 2j01_L 50S ribosomal protein L 75.4 12 0.0004 24.8 6.4 67 11-83 58-124 (125)
11 3mdo_A Putative phosphoribosyl 72.8 15 0.0005 28.4 7.3 62 17-83 305-366 (389)
12 3kiz_A Phosphoribosylformylgly 68.6 20 0.00069 27.7 7.3 60 19-83 309-368 (394)
13 3tpa_A Heme-binding protein A; 67.9 15 0.00052 28.0 6.5 49 38-86 332-391 (521)
14 3m8u_A Heme-binding protein A; 67.3 16 0.00053 27.9 6.4 49 38-86 327-386 (522)
15 1uqw_A Putative binding protei 65.5 25 0.00085 26.7 7.3 48 38-85 325-379 (509)
16 2noo_A NIKA, nickel-binding pe 64.5 25 0.00084 26.5 7.0 49 38-86 309-376 (502)
17 1dd3_A 50S ribosomal protein L 63.6 29 0.001 22.9 9.8 68 11-83 57-127 (128)
18 3eaq_A Heat resistant RNA depe 62.6 24 0.00083 23.6 6.1 34 50-83 27-60 (212)
19 3lvu_A ABC transporter, peripl 61.8 15 0.00052 24.9 5.0 48 39-86 99-164 (258)
20 1fuk_A Eukaryotic initiation f 61.4 25 0.00087 22.2 5.8 32 52-83 28-59 (165)
21 3pam_A Transmembrane protein; 60.8 22 0.00077 24.1 5.7 48 39-86 100-163 (259)
22 2d5w_A Peptide ABC transporter 59.1 28 0.00094 27.0 6.5 49 38-86 371-441 (603)
23 2hjv_A ATP-dependent RNA helic 58.6 26 0.00091 22.2 5.5 32 52-83 33-64 (163)
24 1dpe_A Dipeptide-binding prote 58.4 26 0.00089 26.4 6.2 49 38-86 325-384 (507)
25 2wol_A ORF15, clavulanic acid 56.8 38 0.0013 25.7 6.9 49 38-86 372-425 (562)
26 2grv_A LPQW; substrate-binding 53.8 46 0.0016 26.2 7.1 49 38-86 364-446 (621)
27 3ry3_A Putative solute-binding 53.6 55 0.0019 24.9 7.4 49 38-86 330-396 (528)
28 3i32_A Heat resistant RNA depe 52.5 43 0.0015 24.1 6.3 35 49-83 23-57 (300)
29 2rb4_A ATP-dependent RNA helic 52.3 25 0.00084 22.5 4.6 31 53-83 33-63 (175)
30 1t5i_A C_terminal domain of A 52.1 34 0.0012 22.0 5.3 31 53-83 30-60 (172)
31 3t66_A Nickel ABC transporter 51.6 43 0.0015 25.3 6.4 50 38-87 301-367 (496)
32 1xoc_A Oligopeptide-binding pr 49.7 60 0.0021 24.5 7.0 49 38-86 329-396 (520)
33 1otr_A Protein CUE2; protein-p 49.6 17 0.00058 20.1 2.9 24 27-50 6-29 (49)
34 2vri_A Non-structural protein 47.4 30 0.001 23.2 4.5 40 35-75 132-171 (174)
35 1nkt_A Preprotein translocase 46.7 33 0.0011 29.4 5.5 36 50-85 455-491 (922)
36 2jgn_A DBX, DDX3, ATP-dependen 46.2 55 0.0019 21.3 5.6 31 53-83 45-75 (185)
37 2h0u_A NADPH-flavin oxidoreduc 44.6 27 0.00091 22.9 3.9 31 43-74 145-175 (217)
38 2fsf_A Preprotein translocase 44.4 36 0.0012 28.9 5.3 35 50-84 436-471 (853)
39 2o7i_A Oligopeptide ABC transp 44.0 65 0.0022 24.9 6.5 49 38-86 341-409 (592)
40 3rqt_A Putative uncharacterize 43.5 47 0.0016 25.0 5.5 50 38-87 307-365 (486)
41 3drf_A Oligopeptide-binding pr 43.0 48 0.0016 25.7 5.6 46 39-84 379-443 (590)
42 3re1_A Uroporphyrinogen-III sy 42.8 30 0.001 24.1 4.1 34 52-85 11-44 (269)
43 2dgd_A 223AA long hypothetical 42.2 76 0.0026 21.3 7.5 67 13-83 67-138 (223)
44 2hay_A Putative NAD(P)H-flavin 42.0 36 0.0012 22.5 4.2 30 44-74 152-181 (224)
45 1tf5_A Preprotein translocase 41.4 35 0.0012 28.9 4.8 35 50-84 427-462 (844)
46 4es6_A Uroporphyrinogen-III sy 40.2 36 0.0012 23.3 4.1 33 53-85 4-36 (254)
47 3hh1_A Tetrapyrrole methylase 40.2 62 0.0021 19.7 5.7 48 39-86 63-116 (117)
48 3j20_O 30S ribosomal protein S 39.8 13 0.00045 25.0 1.7 65 11-76 4-68 (148)
49 1vr5_A Oligopeptide ABC transp 39.1 76 0.0026 24.2 6.1 49 38-86 335-403 (547)
50 3ejg_A Non-structural protein 38.0 71 0.0024 22.1 5.3 40 35-75 153-192 (193)
51 3e10_A Putative NADH oxidase; 37.5 52 0.0018 20.9 4.3 23 43-65 96-118 (168)
52 2p6n_A ATP-dependent RNA helic 37.0 41 0.0014 22.2 3.8 30 54-83 54-83 (191)
53 3m84_A Phosphoribosylformylgly 37.0 95 0.0032 22.8 6.2 65 13-83 272-337 (350)
54 1zu0_A Chitin oligosaccharide 36.7 79 0.0027 24.0 5.9 49 38-86 320-388 (529)
55 3eul_A Possible nitrate/nitrit 36.7 18 0.00063 21.8 1.9 46 5-50 8-59 (152)
56 3zs6_A Periplasmic oligopeptid 36.5 48 0.0017 25.0 4.6 48 39-86 329-385 (506)
57 3o9p_A Periplasmic murein pept 36.1 54 0.0018 24.8 4.8 48 39-86 341-397 (519)
58 1xti_A Probable ATP-dependent 35.6 76 0.0026 22.2 5.3 33 52-84 248-280 (391)
59 3eti_A X (ADRP) domain, macro 35.4 78 0.0027 21.2 5.1 40 35-75 128-167 (168)
60 1wgl_A TOLL-interacting protei 35.1 43 0.0015 18.9 3.2 25 24-48 8-32 (59)
61 4dad_A Putative pilus assembly 34.7 21 0.00073 21.3 2.0 31 5-35 13-43 (146)
62 3jux_A Protein translocase sub 34.4 73 0.0025 27.0 5.6 35 51-85 470-505 (822)
63 1wcn_A Transcription elongatio 34.2 42 0.0014 19.4 3.1 34 19-53 25-62 (70)
64 2z01_A Phosphoribosylformylgly 34.1 1.3E+02 0.0045 21.7 7.2 65 13-83 266-330 (348)
65 3p4e_A Phosphoribosylformylgly 33.9 1.4E+02 0.0047 21.9 8.0 66 12-83 267-332 (349)
66 2b67_A COG0778: nitroreductase 33.9 35 0.0012 22.2 3.1 23 44-66 139-161 (204)
67 3p04_A Uncharacterized BCR; SE 33.9 34 0.0012 20.9 2.8 48 39-87 13-65 (87)
68 3gr3_A Nitroreductase; structu 33.7 54 0.0018 21.9 4.1 23 44-66 155-177 (230)
69 3ge6_A Nitroreductase; structu 33.0 38 0.0013 22.3 3.1 23 44-66 146-168 (212)
70 2v1x_A ATP-dependent DNA helic 32.7 60 0.0021 25.5 4.7 33 52-84 265-297 (591)
71 2v9y_A Phosphoribosylformylgly 32.7 1.1E+02 0.0039 22.1 6.0 64 14-83 239-302 (334)
72 2j0s_A ATP-dependent RNA helic 32.3 96 0.0033 21.9 5.4 33 51-83 273-305 (410)
73 3pey_A ATP-dependent RNA helic 31.7 73 0.0025 22.1 4.6 32 53-84 242-273 (395)
74 3h4o_A Nitroreductase family p 31.5 41 0.0014 22.3 3.1 23 44-66 119-141 (191)
75 1nu4_A U1A RNA binding domain; 31.4 16 0.00056 20.9 1.0 69 8-76 4-73 (97)
76 3ptw_A Malonyl COA-acyl carrie 31.2 1.5E+02 0.0052 21.5 6.8 48 38-85 136-193 (336)
77 2pln_A HP1043, response regula 31.1 27 0.00094 20.5 2.0 42 6-49 12-59 (137)
78 1oyw_A RECQ helicase, ATP-depe 30.6 74 0.0025 24.4 4.8 33 52-84 234-266 (523)
79 3gfa_A Putative nitroreductase 30.1 58 0.002 21.0 3.7 23 44-66 133-157 (198)
80 1s2m_A Putative ATP-dependent 29.7 94 0.0032 21.8 5.0 33 52-84 256-288 (400)
81 2i4i_A ATP-dependent RNA helic 29.2 93 0.0032 22.0 4.9 32 53-84 275-306 (417)
82 1wcw_A Uroporphyrinogen III sy 28.3 53 0.0018 22.3 3.3 31 54-85 7-37 (261)
83 1p3q_Q VPS9P, vacuolar protein 28.2 54 0.0019 18.4 2.8 22 25-46 12-33 (54)
84 1fsh_A Dishevelled-1; three-he 28.0 55 0.0019 20.2 3.1 45 11-55 40-84 (105)
85 3e39_A Putative nitroreductase 27.9 70 0.0024 20.5 3.8 19 44-62 105-123 (178)
86 3fht_A ATP-dependent RNA helic 27.7 1.2E+02 0.0043 21.1 5.3 32 52-83 264-295 (412)
87 1c4o_A DNA nucleotide excision 27.6 1.1E+02 0.0039 24.3 5.6 34 51-84 436-469 (664)
88 3oiy_A Reverse gyrase helicase 27.5 1.7E+02 0.0057 20.9 6.0 30 53-82 251-280 (414)
89 1v95_A Nuclear receptor coacti 27.4 57 0.0019 21.3 3.2 23 63-85 20-42 (130)
90 3iz6_M 40S ribosomal protein S 27.0 19 0.00064 24.4 0.8 66 10-76 8-73 (152)
91 2zay_A Response regulator rece 26.8 54 0.0019 19.3 2.9 42 9-50 5-50 (147)
92 3gag_A Putative NADH dehydroge 26.5 32 0.0011 22.5 1.9 23 44-66 140-162 (206)
93 1vhu_A Hypothetical protein AF 26.5 1.4E+02 0.0049 20.4 5.3 42 35-77 153-200 (211)
94 4e7p_A Response regulator; DNA 26.4 29 0.00098 20.9 1.5 43 6-48 14-62 (150)
95 1fob_A Beta-1,4-galactanase; B 26.3 1.8E+02 0.0063 20.9 7.6 39 11-62 42-80 (334)
96 1wp9_A ATP-dependent RNA helic 26.2 1.7E+02 0.0058 20.5 5.9 32 52-83 359-390 (494)
97 3mw8_A Uroporphyrinogen-III sy 26.1 25 0.00086 23.8 1.3 31 55-85 1-31 (240)
98 3kyj_B CHEY6 protein, putative 26.1 34 0.0012 20.4 1.8 31 5-35 6-36 (145)
99 2dx6_A Hypothetical protein TT 26.1 1.3E+02 0.0044 19.4 4.8 35 38-72 119-157 (159)
100 3a11_A Translation initiation 26.0 1E+02 0.0035 22.9 4.8 46 42-87 152-201 (338)
101 1vfr_A NAD(P)H\:FMN oxidoreduc 26.0 48 0.0017 21.6 2.7 22 44-65 147-168 (218)
102 3ge5_A Putative NAD(P)H:FMN ox 25.8 59 0.002 21.7 3.1 23 44-66 128-150 (198)
103 1wyz_A Putative S-adenosylmeth 25.7 1.3E+02 0.0043 20.7 5.0 46 41-86 69-120 (242)
104 2d7d_A Uvrabc system protein B 25.7 1.2E+02 0.004 24.2 5.3 33 52-84 443-475 (661)
105 3of4_A Nitroreductase; structu 25.5 34 0.0012 22.8 1.9 22 44-65 139-160 (209)
106 3eiq_A Eukaryotic initiation f 25.4 92 0.0032 21.9 4.3 32 52-83 278-309 (414)
107 3ek3_A Nitroreductase; YP_2117 25.2 58 0.002 21.0 3.0 20 44-63 117-136 (190)
108 2dhy_A CUE domain-containing p 25.2 78 0.0027 18.3 3.2 25 23-47 16-40 (67)
109 3qdl_A Oxygen-insensitive NADP 25.2 50 0.0017 21.8 2.7 23 44-66 144-166 (210)
110 1nox_A NADH oxidase; flavoenzy 25.2 63 0.0022 20.8 3.1 22 44-65 140-161 (205)
111 3bem_A Putative NAD(P)H nitror 25.1 62 0.0021 21.4 3.1 22 44-65 151-172 (218)
112 3m5k_A Putative NADH dehydroge 24.6 54 0.0019 21.0 2.7 24 43-66 101-124 (172)
113 2i7h_A Nitroreductase-like fam 24.3 63 0.0022 20.7 3.0 20 44-63 120-139 (189)
114 1tiz_A Calmodulin-related prot 24.3 78 0.0027 15.9 4.0 39 22-60 17-55 (67)
115 3eo8_A BLUB-like flavoprotein; 24.3 85 0.0029 20.5 3.7 31 44-75 146-178 (219)
116 3tc8_A Leucine aminopeptidase; 24.2 67 0.0023 23.2 3.4 54 32-85 15-69 (309)
117 4fe3_A Cytosolic 5'-nucleotida 23.9 54 0.0019 22.7 2.7 22 13-36 276-297 (297)
118 3kwk_A Putative NADH dehydroge 23.7 58 0.002 20.9 2.7 23 44-66 105-127 (175)
119 1jet_A OPPA, oligo-peptide bin 23.2 1.3E+02 0.0045 22.5 5.0 48 39-86 338-395 (517)
120 3pxv_A Nitroreductase; flavopr 22.9 60 0.0021 20.9 2.7 20 44-63 117-136 (189)
121 2fre_A NAD(P)H-flavin oxidored 22.7 73 0.0025 20.8 3.1 23 44-66 118-140 (200)
122 2r01_A Nitroreductase family p 22.6 72 0.0025 21.2 3.1 23 43-65 117-139 (210)
123 3hj9_A Oxidoreductase; structu 22.6 71 0.0024 21.5 3.1 23 44-66 168-190 (223)
124 3ecs_A Translation initiation 22.5 1.2E+02 0.0042 22.4 4.6 46 42-87 132-181 (315)
125 3hv2_A Response regulator/HD d 22.5 58 0.002 19.5 2.4 44 5-48 7-54 (153)
126 2wzv_A NFNB protein; nitroredu 22.4 1E+02 0.0035 20.2 3.8 21 44-64 164-184 (235)
127 1icr_A Oxygen-insensitive NAD( 22.4 43 0.0015 21.8 1.9 22 44-65 147-168 (217)
128 1hv8_A Putative ATP-dependent 22.4 1.1E+02 0.0037 21.0 4.0 32 52-83 236-267 (367)
129 1c07_A Protein (epidermal grow 22.4 1.2E+02 0.0041 17.3 4.9 49 23-73 27-75 (95)
130 3ixl_A Amdase, arylmalonate de 22.3 2E+02 0.0067 19.8 5.8 69 13-83 67-147 (240)
131 2xzm_M RPS18E; ribosome, trans 22.3 23 0.0008 24.0 0.5 65 11-76 11-75 (155)
132 2z83_A Helicase/nucleoside tri 22.2 1E+02 0.0035 23.0 4.2 32 53-84 189-220 (459)
133 2ve8_A FTSK, DNA translocase F 22.1 1.1E+02 0.0038 18.1 3.5 26 30-56 28-53 (73)
134 3u61_A DNA polymerase accessor 21.9 67 0.0023 22.7 2.8 31 24-55 118-148 (199)
135 3gbh_A NAD(P)H-flavin oxidored 21.8 54 0.0018 21.5 2.3 23 44-66 147-169 (213)
136 2b4a_A BH3024; flavodoxin-like 21.7 47 0.0016 19.5 1.8 40 7-48 10-55 (138)
137 2kn2_A Calmodulin; S MAPK phos 21.6 1E+02 0.0035 16.8 3.3 38 23-60 26-63 (92)
138 4eo3_A Bacterioferritin comigr 21.6 73 0.0025 23.1 3.1 24 44-67 245-268 (322)
139 1eh2_A EPS15; calcium binding, 21.5 1.4E+02 0.0048 17.9 4.4 51 19-71 27-77 (106)
140 3ju3_A Probable 2-oxoacid ferr 21.4 1.3E+02 0.0045 18.4 4.0 27 57-83 17-44 (118)
141 3n2s_A NADPH-dependent nitro/f 21.3 1.2E+02 0.0042 20.8 4.2 31 44-74 118-149 (249)
142 2ii1_A Acetamidase; 10172637, 21.3 88 0.003 23.1 3.5 40 11-51 224-268 (301)
143 1qjt_A EH1, epidermal growth f 21.2 1.1E+02 0.0039 17.8 3.5 50 20-71 25-74 (99)
144 1s6j_A CDPK, calcium-dependent 21.0 1.1E+02 0.0038 16.4 3.9 38 22-59 39-76 (87)
145 2yjt_D ATP-dependent RNA helic 26.4 20 0.0007 22.9 0.0 30 52-81 28-57 (170)
146 2v6i_A RNA helicase; membrane, 20.9 1.1E+02 0.0039 22.6 4.1 32 53-84 170-201 (431)
147 1spv_A Putative polyprotein/ph 20.8 1.9E+02 0.0066 19.2 5.3 40 36-76 126-173 (184)
148 3r8n_M 30S ribosomal protein S 20.8 28 0.00096 22.4 0.6 58 19-77 5-62 (114)
149 2vs7_A I-DMOI, homing endonucl 20.7 1.4E+02 0.0049 20.0 4.3 30 56-85 124-153 (199)
150 2lmt_A Calmodulin-related prot 20.6 1.1E+02 0.0036 18.5 3.4 36 24-59 101-136 (148)
151 3d8t_A Uroporphyrinogen-III sy 20.5 67 0.0023 22.4 2.7 30 53-83 31-60 (286)
152 2lpm_A Two-component response 20.5 95 0.0033 19.3 3.2 41 10-50 6-51 (123)
153 3civ_A Endo-beta-1,4-mannanase 20.5 2.2E+02 0.0077 20.8 5.7 46 40-85 51-117 (343)
154 3k6h_A Nitroreductase family p 20.3 82 0.0028 20.6 3.0 20 44-63 127-146 (197)
155 3sgf_J 50S ribosomal protein L 20.0 22 0.00076 23.3 0.0 68 11-83 53-120 (121)
No 1
>3dnj_A ATP-dependent CLP protease adapter protein CLPS; adaptor, protein-peptide complex, peptide binding protein; 1.15A {Caulobacter vibrioides} SCOP: d.45.1.2 PDB: 3g19_A 3gq0_A 3gq1_A 3gw1_A 3g1b_A 3g3p_A*
Probab=100.00 E-value=6.3e-38 Score=200.85 Aligned_cols=78 Identities=24% Similarity=0.346 Sum_probs=72.4
Q ss_pred CCCCceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHH------hhcCCee
Q 034596 8 GSGDSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMM------VRGGLRS 81 (90)
Q Consensus 8 ~~~~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l------~~~gL~~ 81 (90)
++|++|+|||||||+|||||||++|+++| |+|.++|++||++||++|+|+||+|++|+||+++.++ .++||+|
T Consensus 2 ~~p~~y~Vil~NDd~~tme~Vv~vL~~vf-~~~~e~A~~iml~VH~~G~avv~~~~~e~AE~k~~q~~~~ar~~~~pL~~ 80 (85)
T 3dnj_A 2 QKPSLYRVLILNDDYTPMEFVVYVLERFF-NKSREDATRIMLHVHQNGVGVCGVYTYEVAETKVAQVIDSARRHQHPLQC 80 (85)
T ss_dssp ----CEEEEEECCSSSBHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHSEEEEEEECHHHHHHHHHHHHHHHHHTTCCCCE
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHh-CCCHHHHHHHHHHHhhCCcEEEEEecHHHHHHHHHHHHHHHHHcCCCceE
Confidence 57899999999999999999999999999 9999999999999999999999999999999999999 5889999
Q ss_pred EEEeC
Q 034596 82 TIEPD 86 (90)
Q Consensus 82 ~iep~ 86 (90)
+|||+
T Consensus 81 t~e~~ 85 (85)
T 3dnj_A 81 TMEKD 85 (85)
T ss_dssp EEEEC
T ss_pred EeccC
Confidence 99996
No 2
>2w9r_A YLJA, ATP-dependent CLP protease adapter protein CLPS; chaperone, adaptor protein, DNA condensation, iron, CLPS, CLPA, cytoplasm, N-END RULE; HET: DNA; 1.70A {Escherichia coli} PDB: 2wa9_A 1mbx_C* 1mbv_B 1mbu_C* 1r6o_C* 1r6q_C* 2wa8_A 3o2h_A* 3o2b_A* 1mg9_A* 1lzw_A*
Probab=100.00 E-value=9.9e-37 Score=202.54 Aligned_cols=83 Identities=25% Similarity=0.284 Sum_probs=79.4
Q ss_pred CCCCCCCCceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHh------hc
Q 034596 4 KRGTGSGDSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMV------RG 77 (90)
Q Consensus 4 ~~~~~~~~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~------~~ 77 (90)
+++.+.|++|+|||||||+|||||||++|+++| |+|.++|++||++||++|+|+||+|++|+||+++.+++ ++
T Consensus 19 ~~~~~~p~~y~ViL~NDd~ttmefVv~vL~~~f-~~~~~~A~~iml~VH~~G~avv~~~~~e~AE~k~~~l~~~ar~~~~ 97 (108)
T 2w9r_A 19 RDALKPPSMYKVILVNDDYTPMEFVIDVLQKFF-SYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEH 97 (108)
T ss_dssp HHTCCCCCEEEEEEECCSSSBHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHSEEEEEEEEHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccCCCCceEEEEEcCCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHHhhCCCEEEEEeCHHHHHHHHHHHHHHHHhCCC
Confidence 357889999999999999999999999999999 99999999999999999999999999999999999997 58
Q ss_pred CCeeEEEeCC
Q 034596 78 GLRSTIEPDS 87 (90)
Q Consensus 78 gL~~~iep~~ 87 (90)
||+|+|||++
T Consensus 98 pL~~t~E~~~ 107 (108)
T 2w9r_A 98 PLLCTLEKAG 107 (108)
T ss_dssp CCEEEEEECC
T ss_pred CcEEEEEeCC
Confidence 9999999985
No 3
>3o1f_A ATP-dependent CLP protease adapter protein CLPS; adaptor, hydrolase; HET: SME; 1.40A {Escherichia coli} SCOP: d.45.1.2 PDB: 3o1f_B* 3o2o_A
Probab=100.00 E-value=4.7e-36 Score=190.64 Aligned_cols=75 Identities=27% Similarity=0.286 Sum_probs=72.6
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHH------hhcCCeeEEE
Q 034596 11 DSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMM------VRGGLRSTIE 84 (90)
Q Consensus 11 ~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l------~~~gL~~~ie 84 (90)
|+|+|||||||+|||||||++|+++| ++|.++|++||++||++|+|+||+|++|+||+++.++ .++||+|+||
T Consensus 1 ~~y~Vil~NDd~~tme~Vi~vL~~vf-~~~~~~A~~iml~vH~~G~avv~~~~~e~AE~k~~~v~~~ar~~~~PL~~t~e 79 (81)
T 3o1f_A 1 SMYKVILVNDDYTPMEFVIDVLQKFF-SYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAXVNKYARENEHPLLCTLE 79 (81)
T ss_dssp CCEEEEEECCSSSCHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHSEEEEEEECHHHHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH-CCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHHHHHHHHHHHcCCCceEEEe
Confidence 68999999999999999999999999 9999999999999999999999999999999999999 4779999999
Q ss_pred eC
Q 034596 85 PD 86 (90)
Q Consensus 85 p~ 86 (90)
|+
T Consensus 80 ~~ 81 (81)
T 3o1f_A 80 KA 81 (81)
T ss_dssp EC
T ss_pred eC
Confidence 85
No 4
>1x60_A Sporulation-specific N-acetylmuramoyl-L-alanine amidase; CWLC, CWLCR, peptidoglycan, cell WALL lytic amidase, tandem repeats, hydrolase; NMR {Bacillus subtilis}
Probab=91.02 E-value=0.9 Score=26.45 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHhhCC------------cEEEEee-eHHHHHHHHHHHhhcCCeeEEEeC
Q 034596 39 VTPDDARKLFHESREHG------------MAIVIVT-VKEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 39 ~s~~~A~~i~~~vH~~G------------~a~v~~~-~~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
-+.+.|.++.......| +..||.+ +++.|+..+.+|+..|+.|.|.+.
T Consensus 18 ~~~~~A~~~~~~L~~~g~~~~i~~~~~~yRV~vGpf~~~~~A~~~~~~L~~~g~~~~iv~~ 78 (79)
T 1x60_A 18 KVKANADSLASNAEAKGFDSIVLLKDGLYKVQIGAFSSKDNADTLAARAKNAGFDAIVILE 78 (79)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEEETTEEEEEEEEESSHHHHHHHHHHHHHHTSCCEEEEE
T ss_pred CCHHHHHHHHHHHHhCCCCeEEecCCcEEEEEECCcCCHHHHHHHHHHHHHcCCceEEEec
Confidence 46778888887776665 2334443 378999999999999998888664
No 5
>1ctf_A Ribosomal protein L7/L12; 1.70A {Escherichia coli} SCOP: d.45.1.1 PDB: 1rqs_A 2bcw_B
Probab=83.98 E-value=5.3 Score=24.24 Aligned_cols=68 Identities=16% Similarity=0.205 Sum_probs=55.5
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 11 DSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 11 ~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
..|-|+|-+-+ ..-=-||..++.+. |++.-+|..+-. .-.+.+--..+++.||....+|...|-.++|
T Consensus 6 teFdV~L~~~~-~~Ki~vIK~VR~it-gLgLkEAK~lVe---~~P~~iKe~vsKeeAe~ik~~Le~aGA~Vel 73 (74)
T 1ctf_A 6 TEFDVILKAAG-ANKVAVIKAVRGAT-GLGLKEAKDLVE---SAPAALKEGVSKDDAEALKKALEEAGAEVEV 73 (74)
T ss_dssp -CEEEEEEECG-GGHHHHHHHHHHHH-CCCHHHHHHHHH---TCSEEEEEEECHHHHHHHHHHHHHHTCEEEE
T ss_pred ceeEEEEeeCC-cchhHHHHHHHHHc-CCCHHHHHHHHH---hCcHHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 46888888765 55667999999998 999999999754 4455666678899999999999999988776
No 6
>2ftc_E L12MT, MRP-L12, 39S ribosomal protein L12, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=78.22 E-value=8.5 Score=25.79 Aligned_cols=72 Identities=18% Similarity=0.137 Sum_probs=57.5
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEEE
Q 034596 10 GDSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRGGLRSTIE 84 (90)
Q Consensus 10 ~~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~ie 84 (90)
...|.|+|-+-+-..-=-||..++.++.|+..-+|..+...+ -+.+----++|.||....+|...|-.++|+
T Consensus 66 KteFdV~L~~~~a~~KI~VIK~VR~i~TgLgLkEAK~lVe~a---P~~iKe~vsKeeAE~iK~kLe~aGA~Vele 137 (137)
T 2ftc_E 66 RTHFTVRLTEAKPVDKVKLIKEIKNYVQGINLVQAKKLVESL---PQEIKANVAKAEAEKIKAALEAVGGTVVLE 137 (137)
T ss_pred CCeeEEEeeccCccchhHHHHHHHHhccCCChHHHHHHHHhC---CHHHHcCCCHHHHHHHHHHHHHcCCEEEeC
Confidence 356999999866556678999999984599999999986543 333434568999999999999999888774
No 7
>1uta_A FTSN, MSGA, cell division protein FTSN; bacterial cell division protein, RNP domain, transmembrane, inner membrane, repeat; NMR {Escherichia coli} SCOP: d.58.52.1
Probab=77.31 E-value=2.1 Score=25.12 Aligned_cols=47 Identities=17% Similarity=0.160 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHhhCCc----------EEEEeee---HHHHHHHHHHHhhcCCeeEEEe
Q 034596 39 VTPDDARKLFHESREHGM----------AIVIVTV---KEHAEFYAQMMVRGGLRSTIEP 85 (90)
Q Consensus 39 ~s~~~A~~i~~~vH~~G~----------a~v~~~~---~e~AE~~~~~l~~~gL~~~iep 85 (90)
.+.+.|.++..+....|- --|-++| ++.|+..+.+|+..|+.+.+..
T Consensus 18 ~~~~~A~~l~~~L~~~G~~a~i~~~~~~yRV~vGpf~s~~~A~~~~~~L~~~g~~~~iv~ 77 (81)
T 1uta_A 18 RGAEQAETVRAQLAFEGFDSKITTNNGWNRVVIGPVKGKENADSTLNRLKMAGHTNCIRL 77 (81)
T ss_dssp SCHHHHHHHHHHHHHHTCCEEEEECSSSEEEEESSCBTTTHHHHHHHHHHHHCCSCCBCC
T ss_pred CCHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEECCcCCHHHHHHHHHHHHHcCCCcEEEe
Confidence 467778888777766652 2344444 6889999999998888776643
No 8
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=76.79 E-value=11 Score=24.88 Aligned_cols=67 Identities=19% Similarity=0.241 Sum_probs=55.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 11 DSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 11 ~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
..|-|+|-+-+ ..-=-||...+.+. |++.-+|..+...+ +.+--..++|+||....+|...|-.++|
T Consensus 55 teFdV~L~~~~-~~KI~VIK~VR~it-gLgLkEAK~lVe~a----~~iKe~vsKeeAE~iK~kLe~aGA~Vel 121 (122)
T 2zjq_5 55 TEFDVVLIDAG-ASKINVIKEIRGIT-GLGLKEAKDMSEKG----GVLKEGVAKDEAEKMKAQLEAAGARVEL 121 (122)
T ss_pred ceeEEEEecCC-cchHHHHHHHHHhc-CCCHHHHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence 56999998865 56678999999987 99999999987655 3333456899999999999999987765
No 9
>3o6p_A Peptide ABC transporter, peptide-binding protein; structural genomics, PSI-2, protein structure initiative; 1.65A {Enterococcus faecalis}
Probab=76.05 E-value=14 Score=24.67 Aligned_cols=49 Identities=18% Similarity=0.395 Sum_probs=37.8
Q ss_pred CCCHHHHHHHHHHHhhC-Cc---EEEE-ee----eHHHHHHHHHHHhh-c-CCeeEEEeC
Q 034596 38 SVTPDDARKLFHESREH-GM---AIVI-VT----VKEHAEFYAQMMVR-G-GLRSTIEPD 86 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~~-G~---a~v~-~~----~~e~AE~~~~~l~~-~-gL~~~iep~ 86 (90)
..+.++|.++..++-.. |. .+.. .. ....|+.++++|++ . |+.++|++.
T Consensus 77 ~~d~~kAk~LL~eaG~~~g~~~l~l~l~~~~~~~~~~~a~~i~~~l~~~i~GI~v~i~~~ 136 (229)
T 3o6p_A 77 EYDTKKAKEYWEKAKKELGISTLTMDILSSDADSSKKTVEFVQGSIQDALDGVKVTVSPV 136 (229)
T ss_dssp CCCHHHHHHHHHHHHHHHTCSCEEEEEEEECSHHHHHHHHHHHHHHHHHSTTEEEEEEEE
T ss_pred ccCHHHHHHHHHHcCcccCCCceEEEEEeCCChHHHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 78999999999998654 62 3322 21 26689999999999 8 999999863
No 10
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=75.35 E-value=12 Score=24.77 Aligned_cols=67 Identities=16% Similarity=0.156 Sum_probs=54.9
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 11 DSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 11 ~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
..|-|+|-+-+ ..-=-||..++.+. |++.-+|..+...+ +.+--.-++|+||....+|...|-.++|
T Consensus 58 teFdV~L~~~~-~~KI~VIK~VR~it-gLgLkEAK~lVe~a----~~iKe~vsKeeAE~iK~kLe~aGA~Vel 124 (125)
T 2j01_L 58 TEFDVILKEAG-AKKLEVIKELRAIT-GLGLKEAKDLAEKG----GPVKEGVSKQEAEEIKKKLEAVGAVVEL 124 (125)
T ss_pred ceeEEEEeeCC-cchHHHHHHHHHhc-CCCHHHHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHcCCEEEe
Confidence 56999998865 56678999999987 99999999987655 3333456899999999999999988765
No 11
>3mdo_A Putative phosphoribosylformylglycinamidine cyclo-; structural genomics, joint center for structural genomics; HET: MSE PGE P6G PG4; 1.91A {Parabacteroides distasonis}
Probab=72.78 E-value=15 Score=28.40 Aligned_cols=62 Identities=16% Similarity=0.121 Sum_probs=51.2
Q ss_pred EEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 17 LIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 17 L~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
..+++-=+..-|...|++.- +.+.++.++ +-+.|.+.|.+-+.+.|+...+.|++.|..+.+
T Consensus 305 ~i~~~~wpvppiF~~l~~~G-~v~~~EM~r----tFNmGiGmVlvV~~e~a~~vl~~l~~~G~~A~i 366 (389)
T 3mdo_A 305 VTKDNLFPIPPLFRTIQEQS-GTDWSEMYK----VFNMGHRMEIYIAPEHAEEVIGISKSFGIDAQI 366 (389)
T ss_dssp EEECSCCCCCHHHHHHHHHH-CCCHHHHHH----HSCTTEEEEEEECGGGHHHHHHHHHHTTCCEEE
T ss_pred EecCCCCCCCHHHHHHHHhc-CCCHHHHHH----hccCcceEEEEECHHHHHHHHHHHHHcCCCeEE
Confidence 33444446688999999999 999988554 889999999999999999999999988876654
No 12
>3kiz_A Phosphoribosylformylglycinamidine cyclo-ligase; STR genomics, joint center for structural genomics, JCSG; 1.50A {Cytophaga hutchinsonii atcc 33406}
Probab=68.56 E-value=20 Score=27.68 Aligned_cols=60 Identities=15% Similarity=0.103 Sum_probs=50.1
Q ss_pred cCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 19 DDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 19 NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
+++-=+..-|...|++.- +.+.++.++ +-+.|.+.|.+-+.+.|+...+.|++.|..+.+
T Consensus 309 ~~~~wpvppiF~~l~~~G-~v~~~EM~r----tFNmGiGmVlvV~~e~a~~vl~~L~~~G~~A~i 368 (394)
T 3kiz_A 309 KDNLFDVPPLFQLIQGQS-NTPWEEMYK----VFNMGHRLEIYTDAAHAEGMIAIAKKFNIEAKI 368 (394)
T ss_dssp ECSCCCCCHHHHHHHHHH-TCCHHHHHH----HSCTTEEEEEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCCCCCHHHHHHHHhC-CCCHHHHHH----hcCCcccEEEEECHHHHHHHHHHHHHcCCCeEE
Confidence 334345678999999998 999988554 889999999999999999999999998876654
No 13
>3tpa_A Heme-binding protein A; glutathione binding protein, SBP; 2.00A {Haemophilus parasuis 29755} SCOP: c.94.1.0
Probab=67.90 E-value=15 Score=27.98 Aligned_cols=49 Identities=16% Similarity=0.245 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHhh-CCcEEEEee----------eHHHHHHHHHHHhhcCCeeEEEeC
Q 034596 38 SVTPDDARKLFHESRE-HGMAIVIVT----------VKEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~-~G~a~v~~~----------~~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
..+.++|.++..++=. .|..+-..+ ....|+.++++|++.|+.+.|++.
T Consensus 332 ~yd~~kAk~LL~eAG~~~G~~l~l~~~~~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~ 391 (521)
T 3tpa_A 332 EFNLEKAKALLAEAGYPNGFETEIWVQPVVRPSNPNPRRTAEIIQADWAKIGVKAKLVTH 391 (521)
T ss_dssp CCCHHHHHHHHHHTTCTTCEEEEEECCSSCBTTBSCHHHHHHHHHHHHHHTTEEEEEECC
T ss_pred CCCHHHHHHHHHHcCCCCCceEEEEEecCCCcCCccHHHHHHHHHHHHHHcCceEEEEec
Confidence 5789999999999865 466554322 167999999999999999999864
No 14
>3m8u_A Heme-binding protein A; glutathione binding protein, ABC-type transport system, PERI component, transport protein; HET: GDS; 1.85A {Haemophilus parasuis}
Probab=67.30 E-value=16 Score=27.91 Aligned_cols=49 Identities=20% Similarity=0.301 Sum_probs=38.9
Q ss_pred CCCHHHHHHHHHHHhh-CCcEEEEee----------eHHHHHHHHHHHhhcCCeeEEEeC
Q 034596 38 SVTPDDARKLFHESRE-HGMAIVIVT----------VKEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~-~G~a~v~~~----------~~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
..+.++|.++..++=. .|..+-..+ ....|+.++++|++.|+.+.|++-
T Consensus 327 ~yd~~kAk~LL~eAG~~~g~~l~l~~~~~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~ 386 (522)
T 3m8u_A 327 EYSPEKAKQLLKEAGFENGFETDIWVQPVVRASNPNPRRMAELVQSDWEKVGVKSKLVSY 386 (522)
T ss_dssp CCCHHHHHHHHHHTTCTTCEEEEEECCSSCBTTBSCHHHHHHHHHHHHHTTTEEEEEECC
T ss_pred CCCHHHHHHHHHHcCCCCCceEEEEEecccccCCchHHHHHHHHHHHHHHcCceEEEEee
Confidence 5789999999998864 466554422 167999999999999999999864
No 15
>1uqw_A Putative binding protein YLIB; Zn binding protein, transport, lipoprotein, bacterial targets at IGS-CNRS, france, BIGS, structural genomics; 2.72A {Escherichia coli} SCOP: c.94.1.1
Probab=65.49 E-value=25 Score=26.66 Aligned_cols=48 Identities=19% Similarity=0.401 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHhh-CCcEEEEee------eHHHHHHHHHHHhhcCCeeEEEe
Q 034596 38 SVTPDDARKLFHESRE-HGMAIVIVT------VKEHAEFYAQMMVRGGLRSTIEP 85 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~-~G~a~v~~~------~~e~AE~~~~~l~~~gL~~~iep 85 (90)
..+.++|.++.-++=. .|..+-..+ ..+.|+.++++|++.|+.+.|++
T Consensus 325 ~yd~~kAk~LL~eaG~~~g~~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~ 379 (509)
T 1uqw_A 325 PYDPVKARELLKEAGYPNGFSTTLWSSHNHSTAQKVLQFTQQQLAQVGIKAQVTA 379 (509)
T ss_dssp CCCHHHHHHHHHHHTCTTCEEEEEEEECCSSSHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred CCCHHHHHHHHHHcCCCCCceEEEEecCCCchHHHHHHHHHHHHHHcCCEEEEEe
Confidence 5799999999988854 354443322 26789999999999999999986
No 16
>2noo_A NIKA, nickel-binding periplasmic protein; nickel-bound, transport, iodine, hydrolase; HET: TYI; 1.65A {Escherichia coli K12} PDB: 3mvx_A* 3dp8_A* 3e3k_A* 1zlq_A* 3mvw_A* 3mvy_A* 3mvz_A* 3mw0_A* 3mz9_A* 1uiu_A 1uiv_A 3mzb_A* 3qim_A
Probab=64.54 E-value=25 Score=26.54 Aligned_cols=49 Identities=20% Similarity=0.241 Sum_probs=37.7
Q ss_pred CCCHHHHHHHHHHHhh-----------CCcE--EEEee------eHHHHHHHHHHHhhcCCeeEEEeC
Q 034596 38 SVTPDDARKLFHESRE-----------HGMA--IVIVT------VKEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~-----------~G~a--~v~~~------~~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
..+.++|.++.-++=. .|+. +-..+ ..+.|+.++++|++.|+.+.|++.
T Consensus 309 ~yd~~kAk~LL~eaG~~~~~~dg~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~ 376 (502)
T 2noo_A 309 QYDPQKAKALLEKAGWTLPAGKDIREKNGQPLRIELSFIGTDALSKSMAEIIQADMRQIGADVSLIGE 376 (502)
T ss_dssp CCCHHHHHHHHHHTTCBCCTTCSSCEETTEECEEEEEEETTCHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCCHHHHHHHHHHcCCCcCCCCceEccCCeEEEEEEEeCCCChhHHHHHHHHHHHHHhcCcEEEEEec
Confidence 5789999999999865 5643 22222 257899999999999999999863
No 17
>1dd3_A 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix-bundl helix- bundle, alpha-beta structure; 2.00A {Thermotoga maritima} SCOP: a.108.1.1 d.45.1.1 PDB: 1dd4_A* 1giy_I 1yl3_I
Probab=63.58 E-value=29 Score=22.94 Aligned_cols=68 Identities=21% Similarity=0.262 Sum_probs=56.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCc---EEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 11 DSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGM---AIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 11 ~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~---a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
..|.|+|-+-+ ..-=-||..++.+. |++.-+|..+.. .-.+ .+--..++++||....+|...|-.++|
T Consensus 57 teFdV~L~~~~-~~KI~VIK~VR~it-gLgLKEAK~lVe---~aP~~~~~iKe~vsKeeAE~iK~kLe~aGA~Vel 127 (128)
T 1dd3_A 57 TEFDVVLKSFG-QNKIQVIKVVREIT-GLGLKEAKDLVE---KAGSPDAVIKSGVSKEEAEEIKKKLEEAGAEVEL 127 (128)
T ss_dssp SSEEEEEEECT-TCHHHHHHHHHHHH-CCCHHHHHHHHT---TTTSTTCEEEEEECHHHHHHHHHHHHHTTCEEEE
T ss_pred ceeeEEEecCC-cchHHHHHHHHHhc-CCCHHHHHHHHH---hCCccchHHHcCCCHHHHHHHHHHHHHcCCEEEe
Confidence 56889998765 56778999999998 999999999854 3445 555567899999999999999988776
No 18
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=62.60 E-value=24 Score=23.59 Aligned_cols=34 Identities=24% Similarity=0.160 Sum_probs=27.4
Q ss_pred HHhhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 50 ESREHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 50 ~vH~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
..+..|+++|+...++.++..+..|...|+.+..
T Consensus 27 ~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~ 60 (212)
T 3eaq_A 27 YVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQA 60 (212)
T ss_dssp HHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEE
T ss_pred HhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEE
Confidence 3456789999999999999999999888776544
No 19
>3lvu_A ABC transporter, periplasmic substrate-binding PR; MCSG, PSI-2, periplasmic substrate-binding silicibacter pomeroyi, structural genomics; HET: MSE PG5; 1.79A {Silicibacter pomeroyi}
Probab=61.81 E-value=15 Score=24.92 Aligned_cols=48 Identities=17% Similarity=0.310 Sum_probs=35.7
Q ss_pred CCHHHHHHHHHHHhh----------CCcEE----EE-e---eeHHHHHHHHHHHhhcCCeeEEEeC
Q 034596 39 VTPDDARKLFHESRE----------HGMAI----VI-V---TVKEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 39 ~s~~~A~~i~~~vH~----------~G~a~----v~-~---~~~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
.+.++|.++..++=. .|+-+ .. . .....|+.++++|++.|+.+.|++.
T Consensus 99 ~d~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGi~v~i~~~ 164 (258)
T 3lvu_A 99 TNLRRAAQFLEQAGFRIEQGQLLGPDGAPLALRFLLRQGDSDMQTVLEIYTRALERLGIAAQIEKV 164 (258)
T ss_dssp HHHHHHHHHHHHTTCEEETTEEECTTSSBCCCEEEEETTCHHHHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred CCHHHHHHHHHHcCCEeCCCcEECCCCcEEEEEEEecCCChhHHHHHHHHHHHHHHcCCeeEEEec
Confidence 468999999999865 36321 11 1 1256899999999999999999863
No 20
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=61.44 E-value=25 Score=22.23 Aligned_cols=32 Identities=6% Similarity=0.087 Sum_probs=26.4
Q ss_pred hhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 52 REHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 52 H~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
+..|+++|+...++.|+..+..|...|+.+..
T Consensus 28 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~ 59 (165)
T 1fuk_A 28 ISVTQAVIFCNTRRKVEELTTKLRNDKFTVSA 59 (165)
T ss_dssp TTCSCEEEEESSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCCEEEEECCHHHHHHHHHHHHHcCCCEEE
Confidence 35688999999999999999999888876554
No 21
>3pam_A Transmembrane protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.31A {Bartonella henselae}
Probab=60.84 E-value=22 Score=24.08 Aligned_cols=48 Identities=23% Similarity=0.324 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHHhh----------CCcE--EEEee----eHHHHHHHHHHHhhcCCeeEEEeC
Q 034596 39 VTPDDARKLFHESRE----------HGMA--IVIVT----VKEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 39 ~s~~~A~~i~~~vH~----------~G~a--~v~~~----~~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
.+.++|.++..++=. .|+- +...+ ....|+.++++|++.|+.++|++.
T Consensus 100 ~d~~kAk~LL~eaG~~~~~~g~~~~~G~~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~ 163 (259)
T 3pam_A 100 LNAQKAWKLLQEAGFTKKNNRLIAPNGLPFQFEIMTQSLEEEKVALAFQSNLSRLGIHAEIRTV 163 (259)
T ss_dssp HHHHHHHHHHHHTTCEEETTEEECTTSCBCEEEEEESSHHHHHHHHHHHHHHHTTTCEEEEEEC
T ss_pred cCHHHHHHHHHHcCCccCCCcEECCCCcEEEEEEEeCCchHHHHHHHHHHHHHHcCCEEEEEec
Confidence 478999999999865 3643 22222 256899999999999999999864
No 22
>2d5w_A Peptide ABC transporter, peptide-binding protein; protein-peptide complex, peptide binding protein; 1.30A {Thermus thermophilus}
Probab=59.06 E-value=28 Score=26.98 Aligned_cols=49 Identities=20% Similarity=0.259 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHhh------------CCc--E--EEE-ee-----eHHHHHHHHHHHhhcCCeeEEEeC
Q 034596 38 SVTPDDARKLFHESRE------------HGM--A--IVI-VT-----VKEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~------------~G~--a--~v~-~~-----~~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
..+.++|.++.-++=. .|+ - +.. .. ....|+.++++|++.|+.+.|++.
T Consensus 371 ~yd~~kAk~LL~eAG~~~~~dG~~~~p~~G~~~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~ 441 (603)
T 2d5w_A 371 EFDLKKAEALLAEMGWRKGPDGILQRTVNGRTVRFEIEYVTTAGNVVRERTQQFFAEDLKKIGIAVKINNA 441 (603)
T ss_dssp CCCHHHHHHHHHHTTCEECTTSCEEEEETTEEEECEEEEECBTTCHHHHHHHHHHHHHHHHTTCEEEECCB
T ss_pred CCCHHHHHHHHHHcCCcCCCCCeEeeCCCCcEeeEEEEEEecCCChHHHHHHHHHHHHHHhcCCEEEEeec
Confidence 5799999999999854 564 2 222 21 256899999999999999999763
No 23
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=58.62 E-value=26 Score=22.15 Aligned_cols=32 Identities=16% Similarity=0.178 Sum_probs=25.9
Q ss_pred hhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 52 REHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 52 H~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
+..++++|+...++.|+..+..|...|+.+..
T Consensus 33 ~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~ 64 (163)
T 2hjv_A 33 ENPDSCIIFCRTKEHVNQLTDELDDLGYPCDK 64 (163)
T ss_dssp HCCSSEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 35678899999999999999999888876654
No 24
>1dpe_A Dipeptide-binding protein; peptide transport, periplasmic, chemotaxis binding proteins for active transport; 2.00A {Escherichia coli K12} SCOP: c.94.1.1 PDB: 1dpp_A
Probab=58.45 E-value=26 Score=26.38 Aligned_cols=49 Identities=20% Similarity=0.338 Sum_probs=38.0
Q ss_pred CCCHHHHHHHHHHHhh-CCcEEEEe----------eeHHHHHHHHHHHhhcCCeeEEEeC
Q 034596 38 SVTPDDARKLFHESRE-HGMAIVIV----------TVKEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~-~G~a~v~~----------~~~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
..+.++|.++.-++=. .|..+-.. ...+.|+.++++|++.|+.+.|++.
T Consensus 325 ~yd~~kAk~LL~eAG~~~G~~l~l~~~~~~~~~~~~~~~~a~~i~~~l~~iGI~v~i~~~ 384 (507)
T 1dpe_A 325 TYDPEKAKALLKEAGLEKGFSIDLWAMPVQRPYNPNARRMAEMIQADWAKVGVQAKIVTY 384 (507)
T ss_dssp CCCHHHHHHHHHHTTCTTCEEEEEECCSSCBTTBSCHHHHHHHHHHHHHTTTEEEEEECC
T ss_pred CCCHHHHHHHHHHcCCCCCcceEEEecccccCCCccHHHHHHHHHHHHHHcCCEEEEEEe
Confidence 5789999999988854 46554431 1367899999999999999999863
No 25
>2wol_A ORF15, clavulanic acid biosynthesis oligopeptide binding protein 2; solute-binding protein; 1.45A {Streptomyces clavuligerus} PDB: 2wok_A 2wop_A*
Probab=56.77 E-value=38 Score=25.75 Aligned_cols=49 Identities=22% Similarity=0.190 Sum_probs=37.2
Q ss_pred CCCHHHHHHHHHHHhh-CCcEEEEeee----HHHHHHHHHHHhhcCCeeEEEeC
Q 034596 38 SVTPDDARKLFHESRE-HGMAIVIVTV----KEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~-~G~a~v~~~~----~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
..+.++|.++.-++=. .|..+-..++ .+.|+.++++|++.|+.+.|++.
T Consensus 372 ~yd~~kAk~LL~eAG~~~g~~l~l~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~ 425 (562)
T 2wol_A 372 RGDLDAARAELAAAGLPDGFRAVIGTQRGKFRLVADAVVESLARVGIELTVKEL 425 (562)
T ss_dssp SCCHHHHHHHHHHTTCTTCEEEEEEEESSHHHHHHHHHHHHHHTTTEEEEEEEE
T ss_pred CCCHHHHHHHHHHhCCCCCeEEEEEecCChHHHHHHHHHHHHHHcCceeEEEec
Confidence 4689999999988754 4544433222 27899999999999999999863
No 26
>2grv_A LPQW; substrate-binding protein scaffold, biosynthetic protein; 2.40A {Mycobacterium smegmatis str}
Probab=53.81 E-value=46 Score=26.20 Aligned_cols=49 Identities=22% Similarity=0.275 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHhh--------------------------CCcE--EEEee------eHHHHHHHHHHHhhcCCeeEE
Q 034596 38 SVTPDDARKLFHESRE--------------------------HGMA--IVIVT------VKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~--------------------------~G~a--~v~~~------~~e~AE~~~~~l~~~gL~~~i 83 (90)
..+.++|.++.-++=. .|+- +...+ ....|+.++++|++.|+.++|
T Consensus 364 ~~d~~kAk~LL~eAG~~~~~~~~~~~~~~~~~~~~~dG~~~~dG~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i 443 (621)
T 2grv_A 364 AMTRDDALELLRDAGYVSEPVPPPDNTADDPPPDNGRERIVKDGVPLTIVLGVASNDPTSVAVANTAADQLRNVGIDASV 443 (621)
T ss_dssp CCCHHHHHHHHHHTTCEEECCCCC------------CCEEEETTEECEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCHHHHHHHHHHcCCccccccccccccccccccCCCceeccCCeEEEEEEEeCCCChHHHHHHHHHHHHHHhcCCEEEE
Confidence 4689999999998865 3543 22211 256899999999999999999
Q ss_pred EeC
Q 034596 84 EPD 86 (90)
Q Consensus 84 ep~ 86 (90)
++.
T Consensus 444 ~~~ 446 (621)
T 2grv_A 444 LAL 446 (621)
T ss_dssp EEE
T ss_pred Eec
Confidence 863
No 27
>3ry3_A Putative solute-binding protein; structural genomics, IDP00509, center for structural genomic infectious diseases, csgid, transport prote; 2.43A {Yersinia pestis}
Probab=53.61 E-value=55 Score=24.94 Aligned_cols=49 Identities=14% Similarity=0.254 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHhhC----------Cc--EEEEee------eHHHHHHHHHHHhhcCCeeEEEeC
Q 034596 38 SVTPDDARKLFHESREH----------GM--AIVIVT------VKEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~~----------G~--a~v~~~------~~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
..+.++|.++..++=.. |+ .+-..+ ....|+.++++|++.|+.++|++.
T Consensus 330 ~~d~~kAk~LL~eAG~~~~~dG~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~ 396 (528)
T 3ry3_A 330 DGDIDKAKQILEQAGWQLNSQGTREKNGLPAKITLWYTSGDTTRRDLAQALRSMLKPIGIDVDLKSG 396 (528)
T ss_dssp CSCHHHHHHHHHHTTCEECTTSSEEETTEECEEEEEEESSCHHHHHHHHHHHHHHGGGTCEEEEEEE
T ss_pred CCCHHHHHHHHHHcCCccCCCCEEccCCeEEEEEEEecCCCHHHHHHHHHHHHHHHHcCCEEEEEec
Confidence 57999999999998542 32 222222 136899999999999999999863
No 28
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=52.54 E-value=43 Score=24.09 Aligned_cols=35 Identities=23% Similarity=0.137 Sum_probs=28.6
Q ss_pred HHHhhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 49 HESREHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 49 ~~vH~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
+..+..|+++|+...++.++..+..|...|+.+..
T Consensus 23 l~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~ 57 (300)
T 3i32_A 23 LYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQA 57 (300)
T ss_dssp HHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEE
T ss_pred HHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEE
Confidence 34566899999999999999999999888876644
No 29
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=52.28 E-value=25 Score=22.52 Aligned_cols=31 Identities=19% Similarity=0.441 Sum_probs=25.9
Q ss_pred hCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 53 EHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 53 ~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
..|+++|+...++.|+..+..|...|+.+..
T Consensus 33 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~ 63 (175)
T 2rb4_A 33 TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSL 63 (175)
T ss_dssp CCSEEEEECSCHHHHHHHHHHHHTTTCCEEE
T ss_pred CCCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 4678999999999999999999888876654
No 30
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=52.09 E-value=34 Score=21.97 Aligned_cols=31 Identities=16% Similarity=0.254 Sum_probs=25.6
Q ss_pred hCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 53 EHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 53 ~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
..++++|+..+++.|+..+..|...|+.+..
T Consensus 30 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~ 60 (172)
T 1t5i_A 30 EFNQVVIFVKSVQRCIALAQLLVEQNFPAIA 60 (172)
T ss_dssp CCSSEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCcEEEEECCHHHHHHHHHHHHhcCCCEEE
Confidence 4578999999999999999999888876654
No 31
>3t66_A Nickel ABC transporter (nickel-binding protein); structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Bacillus halodurans}
Probab=51.61 E-value=43 Score=25.29 Aligned_cols=50 Identities=16% Similarity=0.149 Sum_probs=37.4
Q ss_pred CCCHHHHHHHHHHHhhC---------CcE--E-EEee-----eHHHHHHHHHHHhhcCCeeEEEeCC
Q 034596 38 SVTPDDARKLFHESREH---------GMA--I-VIVT-----VKEHAEFYAQMMVRGGLRSTIEPDS 87 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~~---------G~a--~-v~~~-----~~e~AE~~~~~l~~~gL~~~iep~~ 87 (90)
..+.++|.++..++-.. |+- + +... ....|+.++++|++.|+.+.|++..
T Consensus 301 ~~d~~kAk~LL~eaG~~~~dG~~~~dG~~l~l~l~~~~~~~~~~~~a~~i~~~l~~iGI~v~i~~~~ 367 (496)
T 3t66_A 301 ETGTDIAIQYLEEAGYTLENGQMQKDGEPLHFTVLTYGSRAELPLIAQVFQSNAKQIGIEVEIRQIE 367 (496)
T ss_dssp CCSHHHHHHHHHHHTCEECC-CEEETTEECEEEEEECSSSTTHHHHHHHHHHHHHHTTCEEEEEECS
T ss_pred CCCHHHHHHHHHHcCCCCCCCcCccCCcEEEEEEEecCCCccHHHHHHHHHHHHHhcCCEEEEEEec
Confidence 68899999999998543 332 2 1121 1468999999999999999998743
No 32
>1xoc_A Oligopeptide-binding protein APPA; oligopeptide, APPA, transport, transport protein; 1.55A {Bacillus subtilis} SCOP: c.94.1.1
Probab=49.71 E-value=60 Score=24.53 Aligned_cols=49 Identities=12% Similarity=0.161 Sum_probs=36.7
Q ss_pred CCCHHHHHHHHHHHhh-----------CCcE--EEEee------eHHHHHHHHHHHhhcCCeeEEEeC
Q 034596 38 SVTPDDARKLFHESRE-----------HGMA--IVIVT------VKEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~-----------~G~a--~v~~~------~~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
..+.++|.++.-++=. .|+- +-..+ ..+.|+.++++|++.|+.+.|++.
T Consensus 329 ~yd~~kAk~LL~eaG~~~~~~dG~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~ 396 (520)
T 1xoc_A 329 EYNEKKAKQMLAEAGWKDTNGDGILDKDGKKFSFTLKTNQGNKVREDIAVVVQEQLKKIGIEVKTQIV 396 (520)
T ss_dssp CCCHHHHHHHHHHTTCBCSSSSSSCEETTEECEEEEEEETTCHHHHHHHHHHHHHHHTTTCEEEEEEE
T ss_pred CCCHHHHHHHHHHcCCCcCCCCceEccCCeEEEEEEEecCCChHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 5789999999998854 3643 22111 256899999999999999999863
No 33
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=49.57 E-value=17 Score=20.08 Aligned_cols=24 Identities=13% Similarity=0.231 Sum_probs=19.0
Q ss_pred HHHHHHHHhCCCCCHHHHHHHHHH
Q 034596 27 LVAKVLPQVVPSVTPDDARKLFHE 50 (90)
Q Consensus 27 ~Vi~~L~~v~p~~s~~~A~~i~~~ 50 (90)
-=+..|++.||.++...+..+-..
T Consensus 6 ~~v~~L~EMFP~~~~~~ik~~L~~ 29 (49)
T 1otr_A 6 SKLSILMDMFPAISKSKLQVHLLE 29 (49)
T ss_dssp HHHHHHHHHCSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCCCHHHHHHHHHH
Confidence 346789999999999998876544
No 34
>2vri_A Non-structural protein 3; RNA replication, nucleotide-binding, endonuclease, macro domain, viral protein, ATP-binding, exonuclease; 1.8A {Human coronavirus NL63}
Probab=47.44 E-value=30 Score=23.21 Aligned_cols=40 Identities=10% Similarity=0.087 Sum_probs=33.0
Q ss_pred hCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHh
Q 034596 35 VVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMV 75 (90)
Q Consensus 35 v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~ 75 (90)
++ |.+.++|.++|+++-.+-+-.+..+..+..+.|.+.|+
T Consensus 132 ~~-g~p~~~aa~i~~~~v~~~~V~~v~f~~~~~~~~~~~l~ 171 (174)
T 2vri_A 132 IF-GVRIENSLKALFSCDINKPLQVFVYSSNEEQAVLKFLD 171 (174)
T ss_dssp GG-CCCHHHHHHHHHTSCCCSCEEEEECSHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHhhCcEEEEEcCHHHHHHHHHHHh
Confidence 46 88999999999998888667777888888888887774
No 35
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=46.66 E-value=33 Score=29.40 Aligned_cols=36 Identities=14% Similarity=0.266 Sum_probs=30.8
Q ss_pred HHhhCCc-EEEEeeeHHHHHHHHHHHhhcCCeeEEEe
Q 034596 50 ESREHGM-AIVIVTVKEHAEFYAQMMVRGGLRSTIEP 85 (90)
Q Consensus 50 ~vH~~G~-a~v~~~~~e~AE~~~~~l~~~gL~~~iep 85 (90)
+.|..|+ .+|++-+.+.+|..+..|...|+.+.+--
T Consensus 455 ~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLn 491 (922)
T 1nkt_A 455 ERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLN 491 (922)
T ss_dssp HHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEEC
T ss_pred HHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEec
Confidence 4577885 89999999999999999999998877643
No 36
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=46.17 E-value=55 Score=21.30 Aligned_cols=31 Identities=19% Similarity=0.345 Sum_probs=25.6
Q ss_pred hCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 53 EHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 53 ~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
..++++|+...++.|+..+..|+..|+.+..
T Consensus 45 ~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~ 75 (185)
T 2jgn_A 45 KDSLTLVFVETKKGADSLEDFLYHEGYACTS 75 (185)
T ss_dssp CCSCEEEEESCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHcCCceEE
Confidence 4578999999999999999999888866543
No 37
>2h0u_A NADPH-flavin oxidoreductase; structur genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: FMN; 1.90A {Helicobacter pylori}
Probab=44.64 E-value=27 Score=22.95 Aligned_cols=31 Identities=6% Similarity=0.084 Sum_probs=23.4
Q ss_pred HHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHH
Q 034596 43 DARKLFHESREHGMAIVIVTVKEHAEFYAQMM 74 (90)
Q Consensus 43 ~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l 74 (90)
-+.++++.++..|-+.|+.+.++. +...+.|
T Consensus 145 a~~~l~LaA~~~Glgsc~~~~~~~-~~v~~~l 175 (217)
T 2h0u_A 145 QMANMMMAAAMLGIDSCPIEGYDQ-EKVEAYL 175 (217)
T ss_dssp HHHHHHHHHHHTTCEEEEECCSCH-HHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCCcCcCH-HHHHHHH
Confidence 357899999999999999887743 3344445
No 38
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=44.45 E-value=36 Score=28.90 Aligned_cols=35 Identities=17% Similarity=0.342 Sum_probs=29.8
Q ss_pred HHhhCCc-EEEEeeeHHHHHHHHHHHhhcCCeeEEE
Q 034596 50 ESREHGM-AIVIVTVKEHAEFYAQMMVRGGLRSTIE 84 (90)
Q Consensus 50 ~vH~~G~-a~v~~~~~e~AE~~~~~l~~~gL~~~ie 84 (90)
+.|..|+ .+|++-+.+.+|..+..|...|+.+.+-
T Consensus 436 ~~~~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vL 471 (853)
T 2fsf_A 436 ERTAKGQPVLVGTISIEKSELVSNELTKAGIKHNVL 471 (853)
T ss_dssp HHHTTTCCEEEEESSHHHHHHHHHHHHHTTCCCEEC
T ss_pred HHhcCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEe
Confidence 4566776 7889999999999999999999887664
No 39
>2o7i_A Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein; periplasmic binding protein, cellulose, thermophilic proteins; HET: CBI; 1.50A {Thermotoga maritima} PDB: 2o7j_A* 3i5o_A*
Probab=44.00 E-value=65 Score=24.93 Aligned_cols=49 Identities=20% Similarity=0.155 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHhh-----------CCcE---EEEee------eHHHHHHHHHHHhhcCCeeEEEeC
Q 034596 38 SVTPDDARKLFHESRE-----------HGMA---IVIVT------VKEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~-----------~G~a---~v~~~------~~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
..+.++|.++..++=. .|+. +-..+ ....|+.++++|++.|+.+.|++.
T Consensus 341 ~~d~~kAk~LL~eAG~~~~~dG~~~~~~G~~l~~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~ 409 (592)
T 2o7i_A 341 PFDLDMANKILDEAGYKKGPDGVRVGPDGTKLGPYTISVPYGWTDWMMMCEMIAKNLRSIGIDVKTEFP 409 (592)
T ss_dssp CCCHHHHHHHHHHTTCEECTTSCEECTTCCBCCCEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred cCCHHHHHHHHHHcCCCCCCCCeEECCCCCEeeEEEEEeCCCchHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 6799999999988843 4643 32222 256899999999999999999864
No 40
>3rqt_A Putative uncharacterized protein; ligand binding component, ABC-type import system, nickel, SI DI-peptides, structural genomics; HET: MSE HIS EPE; 1.50A {Staphylococcus aureus}
Probab=43.47 E-value=47 Score=24.99 Aligned_cols=50 Identities=12% Similarity=0.159 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHhhC-CcE--EEEee------eHHHHHHHHHHHhhcCCeeEEEeCC
Q 034596 38 SVTPDDARKLFHESREH-GMA--IVIVT------VKEHAEFYAQMMVRGGLRSTIEPDS 87 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~~-G~a--~v~~~------~~e~AE~~~~~l~~~gL~~~iep~~ 87 (90)
..+.++|.++..++=.. |+. +-..+ ....|+.++++|++.|+.+.|++..
T Consensus 307 ~yd~~kAk~LL~eAG~~~g~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~~ 365 (486)
T 3rqt_A 307 KQNIEQAKMLLAKDGYTKEHPLKIKLITYDGRPELSKIAQVLQSDAKKANIEIDIKSVD 365 (486)
T ss_dssp CCCHHHHHHHHHTTTCCSSSCEEEEEEECSSSTHHHHHHHHHHHHHHTTTEEEEEEECS
T ss_pred CCCHHHHHHHHHHCCCCCCCceEEEEEecCCCccHHHHHHHHHHHHHhcCCEEEEEEec
Confidence 67999999999988542 332 21111 1468999999999999999998753
No 41
>3drf_A Oligopeptide-binding protein OPPA; oligo-peptide binding, voluminous binding cavity, venus FLY- trap, peptide binding protein; 1.30A {Lactococcus lactis} PDB: 3drg_A 3drh_A 3dri_A 3drj_A 3drk_A 3fto_A 3rya_A 3ryb_A
Probab=43.05 E-value=48 Score=25.67 Aligned_cols=46 Identities=22% Similarity=0.276 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHhhC-----------CcEEEE--e---e---eHHHHHHHHHHHhhcCCeeEEE
Q 034596 39 VTPDDARKLFHESREH-----------GMAIVI--V---T---VKEHAEFYAQMMVRGGLRSTIE 84 (90)
Q Consensus 39 ~s~~~A~~i~~~vH~~-----------G~a~v~--~---~---~~e~AE~~~~~l~~~gL~~~ie 84 (90)
.+.++|.++.-++=.. |+-+-. . + ....|+.++++|++.|+.+.|+
T Consensus 379 yD~~kAk~LL~eAG~~~~~~dG~~~~~G~~l~l~~~~~~~~~~~~~~a~~i~~~l~~iGI~v~i~ 443 (590)
T 3drf_A 379 QDLDKANKLLDEDGWKLNKSTGYREKDGKELSLVYAARVGDANAETIAQNYIQQWKKIGVKVSLY 443 (590)
T ss_dssp CCHHHHHHHHHHTTCEEETTTTEEEETTEECEEEEECBCCSTTHHHHHHHHHHHHHHTTCEEEEG
T ss_pred cCHHHHHHHHHHCCCcccCCCceECCCCcEEEEEEEecCCChHHHHHHHHHHHHHHHhCcEEEEe
Confidence 8999999999988643 443222 1 1 2578999999999999999997
No 42
>3re1_A Uroporphyrinogen-III synthetase; HEMD-like family, uroporphyrinogen III synthase, HMB, lyase; 2.50A {Pseudomonas syringae PV}
Probab=42.78 E-value=30 Score=24.10 Aligned_cols=34 Identities=15% Similarity=0.254 Sum_probs=27.8
Q ss_pred hhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEEEe
Q 034596 52 REHGMAIVIVTVKEHAEFYAQMMVRGGLRSTIEP 85 (90)
Q Consensus 52 H~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~iep 85 (90)
.-.|+-|+.+-|.+.|+..++.|++.|..+...|
T Consensus 11 ~~~g~~IlvTRp~~~a~~l~~~L~~~G~~~~~~P 44 (269)
T 3re1_A 11 DMSAWRLLLTRPAEESAALARVLADAGIFSSSLP 44 (269)
T ss_dssp --CCCEEEECSCHHHHHHHHHHHHTTTCEEEECC
T ss_pred ccCCCEEEEeCChHHHHHHHHHHHHCCCCEEEcC
Confidence 3469999999999999999999999997665444
No 43
>2dgd_A 223AA long hypothetical arylmalonate decarboxylas; octamer, alpha/beta structure, lyase; 2.90A {Sulfolobus tokodaii}
Probab=42.15 E-value=76 Score=21.27 Aligned_cols=67 Identities=13% Similarity=0.090 Sum_probs=44.7
Q ss_pred eEEEEEcCCCCCHH--HHHHHHHHhCCCCCHHHHHHHHHHHhhCC---cEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 13 YRVLLIDDTRHSEK--LVAKVLPQVVPSVTPDDARKLFHESREHG---MAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 13 y~ViL~NDd~~t~e--~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G---~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
..+|++.-..-+|= -+...|.+.+ +.+ +..+...+...| -++++.+..+..+.|.+.++.+|+.+..
T Consensus 67 ~d~ivi~Cnt~~~~~g~~~~~l~~~~-~iP---~~a~~~a~~~~g~~rvgvlt~~~~~~~~~~~~~l~~~G~~v~~ 138 (223)
T 2dgd_A 67 SDIIIYGRTYGTHKHAHVIKRVIKDV-VIP---EESVYELLKKLNVRKLWIGTPYIKERTLEEVEWWRNKGFEIVG 138 (223)
T ss_dssp CSEEEECCCTTTTTCHHHHHHHSTTC-BCH---HHHHHHHHHHTTCCEEEEEESSCHHHHHHHHHHHHTTTCEEEE
T ss_pred CCEEEEcCCHHHHhhhHHHHHHHHhc-CCC---HHHHHHHHHHcCCCeEEEEeCCchHHHHHHHHHHHhCCcEEec
Confidence 44666655443433 3447888877 676 444445555444 4677777888888999999999988643
No 44
>2hay_A Putative NAD(P)H-flavin oxidoreductase; alpha-beta structure, structural genomics, PSI-2, protein ST initiative; HET: MSE FMN; 2.11A {Streptococcus pyogenes serotype M1}
Probab=42.00 E-value=36 Score=22.47 Aligned_cols=30 Identities=3% Similarity=0.026 Sum_probs=22.7
Q ss_pred HHHHHHHHhhCCcEEEEeeeHHHHHHHHHHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKEHAEFYAQMM 74 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l 74 (90)
+..+++.++..|-+.|+.+.++. +...+.|
T Consensus 152 ~~nl~LaA~~~Glgsc~~~~~~~-~~v~~~l 181 (224)
T 2hay_A 152 LGNMMMTAALLGIDTCPIEGFHY-DKVNHIL 181 (224)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCH-HHHHHHH
T ss_pred HHHHHHHHHHcCCcccCCCCcCH-HHHHHHH
Confidence 57889999999999999887643 3344455
No 45
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=41.39 E-value=35 Score=28.87 Aligned_cols=35 Identities=14% Similarity=0.244 Sum_probs=29.5
Q ss_pred HHhhCC-cEEEEeeeHHHHHHHHHHHhhcCCeeEEE
Q 034596 50 ESREHG-MAIVIVTVKEHAEFYAQMMVRGGLRSTIE 84 (90)
Q Consensus 50 ~vH~~G-~a~v~~~~~e~AE~~~~~l~~~gL~~~ie 84 (90)
+.|..| .++|++-+.+.+|..+..|...|+.+.+-
T Consensus 427 ~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vL 462 (844)
T 1tf5_A 427 QRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVL 462 (844)
T ss_dssp HHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEE
T ss_pred HHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEe
Confidence 346666 48999999999999999999999887664
No 46
>4es6_A Uroporphyrinogen-III synthase; heme-biosynthesis, cytoplasmi; 2.22A {Pseudomonas aeruginosa}
Probab=40.25 E-value=36 Score=23.27 Aligned_cols=33 Identities=18% Similarity=0.282 Sum_probs=26.6
Q ss_pred hCCcEEEEeeeHHHHHHHHHHHhhcCCeeEEEe
Q 034596 53 EHGMAIVIVTVKEHAEFYAQMMVRGGLRSTIEP 85 (90)
Q Consensus 53 ~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~iep 85 (90)
-.|+-++.+.+.+.++..++.|++.|..+...|
T Consensus 4 L~g~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P 36 (254)
T 4es6_A 4 MSGWRLLLTRPDEECAALAASLGEAGVHSSSLP 36 (254)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCEEEECC
T ss_pred CCCCEEEEeCChHHhHHHHHHHHHCCCcEEEeC
Confidence 368999999999999999999999996665443
No 47
>3hh1_A Tetrapyrrole methylase family protein; chlorobium tepidum, structural genom 2, protein structure initiative; 1.85A {Chlorobaculum tepidum}
Probab=40.22 E-value=62 Score=19.75 Aligned_cols=48 Identities=21% Similarity=0.191 Sum_probs=29.6
Q ss_pred CCHHHHHHHHHHHhhCCcEEEEeee------HHHHHHHHHHHhhcCCeeEEEeC
Q 034596 39 VTPDDARKLFHESREHGMAIVIVTV------KEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 39 ~s~~~A~~i~~~vH~~G~a~v~~~~------~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
.++++..+.+.+.-.+|+-++...+ ++........+++.|+.+.+.|.
T Consensus 63 ~~~~~~~~~i~~~~~~G~~V~~l~d~GdP~i~~~~~~l~~~~~~~gi~v~viPG 116 (117)
T 3hh1_A 63 FNEERAVRQVIELLEEGSDVALVTDAGTPAISDPGYTMASAAHAAGLPVVPVPG 116 (117)
T ss_dssp TTHHHHHHHHHHHHHTTCCEEEEEETTSCGGGSTTHHHHHHHHHTTCCEEEEC-
T ss_pred ccHHHHHHHHHHHHHCCCeEEEEecCCcCeEeccHHHHHHHHHHCCCcEEEeCC
Confidence 4454544455555577877765443 44455556667778998888773
No 48
>3j20_O 30S ribosomal protein S13P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=39.79 E-value=13 Score=25.04 Aligned_cols=65 Identities=8% Similarity=-0.050 Sum_probs=57.7
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhh
Q 034596 11 DSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVR 76 (90)
Q Consensus 11 ~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~ 76 (90)
-.|-|.+.|=|+..-.-|...|..++ |.....|..|...+.-.-..-++.-+-|+-+...+.+.+
T Consensus 4 ~~~m~RI~g~~i~~~k~v~~aLt~I~-GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~i~~~i~~ 68 (148)
T 3j20_O 4 FRHIVRVAGVDLDGNKQLRWALTAIK-GIGINFATMVCRVAGLDPFMKAGYLTDEQVKKIEEILAD 68 (148)
T ss_dssp BCSCEECSSSCEECSSCHHHHHHHST-TCCHHHHHHHHHHHTCCSSSCTTBCCHHHHHHHHHHHHC
T ss_pred hhHhHHHcCccCCCCCEehhhhhhcc-CcCHHHHHHHHHHhCCCCCceeccCCHHHHHHHHHHHhc
Confidence 35678888888888889999999999 999999999999999999999999999988888888753
No 49
>1vr5_A Oligopeptide ABC transporter, periplasmic oligope binding protein; TM1223, periplasmic oligopepti binding, structural genomics; HET: EPE; 1.73A {Thermotoga maritima} SCOP: c.94.1.1
Probab=39.09 E-value=76 Score=24.24 Aligned_cols=49 Identities=18% Similarity=0.198 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHhh------------CCcE--EEEee------eHHHHHHHHHHHhhcCCeeEEEeC
Q 034596 38 SVTPDDARKLFHESRE------------HGMA--IVIVT------VKEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~------------~G~a--~v~~~------~~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
..+.++|.++.-++=. .|+- +-..+ ....|+.++++|++.|+.+.|++.
T Consensus 335 ~yd~~kAk~LL~eAG~~~~~~dG~~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~ 403 (547)
T 1vr5_A 335 KYDPEMAKKILDELGFKDVNKDGFREDPNGKPFKLTIECPYGWTDWMVSIQSIAEDLVKVGINVEPKYP 403 (547)
T ss_dssp CSCHHHHHHHHHHTTCBCCSSSSSCBCTTSCCCCEEEECCTTCHHHHHHHHHHHHHHHTTTCCEEEECC
T ss_pred CCCHHHHHHHHHHCCCeEECCCCeEECCCCeEEEEEEEecCCChhHHHHHHHHHHHHHhcCceEEEeec
Confidence 6899999999988843 3432 22221 246899999999999999999864
No 50
>3ejg_A Non-structural protein 3; HCOV 229E, X-domain, macro domain, NSP3, ADRP, hydrolase, ribosomal frameshifting, RNA-binding; 1.78A {Human coronavirus 229E} PDB: 3ewr_A* 3ewq_A*
Probab=38.04 E-value=71 Score=22.07 Aligned_cols=40 Identities=5% Similarity=0.055 Sum_probs=32.7
Q ss_pred hCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHh
Q 034596 35 VVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMV 75 (90)
Q Consensus 35 v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~ 75 (90)
+| |++.++|.++|+.+=.+-+-++..++.+..+.|.+.|.
T Consensus 153 i~-G~P~~~aa~ial~~v~~~~V~fv~f~~~~~~~~~~~l~ 192 (193)
T 3ejg_A 153 IF-GIKLETSLEVLLDVCNTKEVKVFVYTDTEVCKVKDFVS 192 (193)
T ss_dssp GG-CCCHHHHHHHHHHHCCSSCEEEEECSHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHhcCeEEEEEcCHHHHHHHHHHhc
Confidence 57 89999999999988887777777888888888877664
No 51
>3e10_A Putative NADH oxidase; NP_348178.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; HET: MSE FMN EPE; 1.40A {Clostridium acetobutylicum}
Probab=37.49 E-value=52 Score=20.86 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=20.2
Q ss_pred HHHHHHHHHhhCCcEEEEeeeHH
Q 034596 43 DARKLFHESREHGMAIVIVTVKE 65 (90)
Q Consensus 43 ~A~~i~~~vH~~G~a~v~~~~~e 65 (90)
-+.++++.++..|-+.|+.+...
T Consensus 96 a~~~l~LaA~~~Glgs~~~~~~~ 118 (168)
T 3e10_A 96 AAENILLEAAYLDLGAVWLGAQP 118 (168)
T ss_dssp HHHHHHHHHHHTTCEEEEEECTT
T ss_pred HHHHHHHHHHHCCCeEEEEeccc
Confidence 37899999999999999988765
No 52
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=37.04 E-value=41 Score=22.19 Aligned_cols=30 Identities=7% Similarity=0.165 Sum_probs=25.4
Q ss_pred CCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 54 HGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 54 ~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
.++++|+...++.|+..+..|+..|+.+..
T Consensus 54 ~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~ 83 (191)
T 2p6n_A 54 PPPVLIFAEKKADVDAIHEYLLLKGVEAVA 83 (191)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEEECCHHHHHHHHHHHHHcCCcEEE
Confidence 578899999999999999999888877654
No 53
>3m84_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha-beta fold, csgid, ATP-binding, nucleotide-BIND purine biosynthesis; HET: MSE AMP TRS; 1.70A {Francisella tularensis subsp} PDB: 3qty_A*
Probab=37.02 E-value=95 Score=22.76 Aligned_cols=65 Identities=8% Similarity=0.141 Sum_probs=44.2
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhhcCC-eeEE
Q 034596 13 YRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRGGL-RSTI 83 (90)
Q Consensus 13 y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~~gL-~~~i 83 (90)
..+.+.-|.+-. .-....+++.+ +++..+.+. .-..|.++|.+.+.+.++...+.++++|+ .+++
T Consensus 272 vg~~I~~~~iP~-~~~~~~~~~~~-~~~~~e~~~----~~~~g~gll~~v~~~~~~~~~~~l~~~g~~~a~~ 337 (350)
T 3m84_A 272 LGAQIDKDSFAT-PAIFKLMQRIG-DISEFEMYR----SFNMGIGMTIIASQDQFDKMQELAKKHTNTKLYQ 337 (350)
T ss_dssp CEEEECGGGSCC-CHHHHHHHHHH-TCCHHHHHH----HCCTTEEEEEEECGGGHHHHHHHHTTCTTSCEEE
T ss_pred ceEEEEcccCCC-cHHHHHHHHhc-CCCHHHHHH----HHhCCCCEEEEECHHHHHHHHHHHHhcCCCCeEE
Confidence 344444444432 33455666767 777765433 33467779999999999999999999998 7654
No 54
>1zu0_A Chitin oligosaccharide binding protein; alpha helix/beta sheet, sugar binding protein, signaling protein; HET: CBS; 2.20A {Vibrio cholerae} PDB: 1zty_A*
Probab=36.74 E-value=79 Score=23.97 Aligned_cols=49 Identities=10% Similarity=0.276 Sum_probs=36.5
Q ss_pred CCCHHHHHHHHHHHhh------------CCcE--EEEee------eHHHHHHHHHHHhhcCCeeEEEeC
Q 034596 38 SVTPDDARKLFHESRE------------HGMA--IVIVT------VKEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~------------~G~a--~v~~~------~~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
..+.++|.++..++=. .|+. +-..+ ....|+.++++|++.|+.+.|++.
T Consensus 320 ~~d~~kAk~LL~eAG~~~~~~dG~~~~~~G~~l~l~l~~~~~~~~~~~~a~~iq~~l~~iGI~v~i~~~ 388 (529)
T 1zu0_A 320 TYDVEGSKKLLAKAGFKDVNGDGFVETPSGKSFELLIQSPNGWTDFNNTVQLAVEQLQEVGIKAKARTP 388 (529)
T ss_dssp SCCHHHHHHHHHHTTCBCCSSSSSCBCTTCCCCCEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CCCHHHHHHHHHHcCCeEECCCceEECCCCcEEEEEEEecCCCHHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 6899999999988843 2432 22211 246899999999999999999864
No 55
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=36.65 E-value=18 Score=21.83 Aligned_cols=46 Identities=17% Similarity=0.104 Sum_probs=30.4
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHHhCC------CCCHHHHHHHHHH
Q 034596 5 RGTGSGDSYRVLLIDDTRHSEKLVAKVLPQVVP------SVTPDDARKLFHE 50 (90)
Q Consensus 5 ~~~~~~~~y~ViL~NDd~~t~e~Vi~~L~~v~p------~~s~~~A~~i~~~ 50 (90)
+.+..++.++|++.+|+....+.+...|.+... --+.++|.+...+
T Consensus 8 ~~~~~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~ 59 (152)
T 3eul_A 8 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKA 59 (152)
T ss_dssp ------CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHHH
T ss_pred CCCCCCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHHh
Confidence 345667889999999999999999999887531 2366677665543
No 56
>3zs6_A Periplasmic oligopeptide-binding protein; peptide binding protein, ABC transport system; HET: GOL; 2.10A {Burkholderia pseudomallei}
Probab=36.52 E-value=48 Score=24.96 Aligned_cols=48 Identities=19% Similarity=0.151 Sum_probs=35.3
Q ss_pred CCHHHHHHHHHHHhhC-CcE--EEEee-----eHHHHHHHHHHHhh-cCCeeEEEeC
Q 034596 39 VTPDDARKLFHESREH-GMA--IVIVT-----VKEHAEFYAQMMVR-GGLRSTIEPD 86 (90)
Q Consensus 39 ~s~~~A~~i~~~vH~~-G~a--~v~~~-----~~e~AE~~~~~l~~-~gL~~~iep~ 86 (90)
.+.++|.++.-++-.. |+. +-..+ ....|+.++++|++ .|+.+.|++.
T Consensus 329 ~d~~kAk~LL~eAG~~~G~~~~l~l~~~~~~~~~~~a~~i~~~l~~~iGI~v~i~~~ 385 (506)
T 3zs6_A 329 RRVDYAKNLLKQAGHGDANPLTFTLTYNTNDLHKKVALFAASEWRTKLGVTAKLENV 385 (506)
T ss_dssp HHHHHHHHHHHHTTCSTTSCCEEEEEEESCHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred CCHHHHHHHHHHcCCCCCCCceEEEEEcCCchHHHHHHHHHHHHHHhcCCEEEEEeC
Confidence 3578999999988765 532 21211 25789999999998 9999999863
No 57
>3o9p_A Periplasmic murein peptide-binding protein; oligopeptide binding proteins, murein tripeptide, periplasmi protein; HET: MHI; 2.07A {Escherichia coli} SCOP: c.94.1.0
Probab=36.10 E-value=54 Score=24.78 Aligned_cols=48 Identities=13% Similarity=0.113 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHhhC-CcE--EEEee-----eHHHHHHHHHHHhh-cCCeeEEEeC
Q 034596 39 VTPDDARKLFHESREH-GMA--IVIVT-----VKEHAEFYAQMMVR-GGLRSTIEPD 86 (90)
Q Consensus 39 ~s~~~A~~i~~~vH~~-G~a--~v~~~-----~~e~AE~~~~~l~~-~gL~~~iep~ 86 (90)
.+.++|.++..++=.. |+. +-..+ ....|+.++++|++ .|+.+.|++.
T Consensus 341 ~d~~kAk~LL~eaG~~~G~~l~l~l~~~~~~~~~~~a~~i~~~l~~~iGI~v~i~~~ 397 (519)
T 3o9p_A 341 ELNAQAKTLLSAAGYGPQKPLKLTLLYNTSENHQKIAIAVASMWKKNLGVDVKLQNQ 397 (519)
T ss_dssp HHHHHHHHHHHHHTCBTTBCCEEEEEEESCHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred cCHHHHHHHHHHcCCCCCCCceEEEEecCCchhHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 4678999999988654 532 21111 25789999999998 9999999863
No 58
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=35.61 E-value=76 Score=22.15 Aligned_cols=33 Identities=15% Similarity=0.190 Sum_probs=27.1
Q ss_pred hhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEEE
Q 034596 52 REHGMAIVIVTVKEHAEFYAQMMVRGGLRSTIE 84 (90)
Q Consensus 52 H~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~ie 84 (90)
+..|+++|..-.++.|+..++.|...|+.+..-
T Consensus 248 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~ 280 (391)
T 1xti_A 248 LEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI 280 (391)
T ss_dssp SCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEE
Confidence 466889999999999999999999888766543
No 59
>3eti_A X (ADRP) domain, macro domain of non-structural protein 3; coronavirus, X domain, RNA binding protein; 2.20A {Feline infectious peritonitis virus} PDB: 3ew5_A* 3jzt_A*
Probab=35.41 E-value=78 Score=21.19 Aligned_cols=40 Identities=8% Similarity=0.012 Sum_probs=31.6
Q ss_pred hCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHh
Q 034596 35 VVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMV 75 (90)
Q Consensus 35 v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~ 75 (90)
+| |++.++|.++|+.+=.+-+-++-.++.+.-+.|.+.|.
T Consensus 128 ~~-g~P~~~aa~i~~~~v~~~~V~~v~f~~~~~~~~~~~l~ 167 (168)
T 3eti_A 128 IF-KVKLEVSLQCLLKTVTDRDLNVFVYTDQERVTIENFFN 167 (168)
T ss_dssp TT-CBCHHHHHHHHHHHCCSSCEEEEECCHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHhcCeEEEEEcCHHHHHHHHHHhc
Confidence 46 88999999999988887666667888888877776653
No 60
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=35.08 E-value=43 Score=18.91 Aligned_cols=25 Identities=12% Similarity=0.276 Sum_probs=19.9
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHH
Q 034596 24 SEKLVAKVLPQVVPSVTPDDARKLF 48 (90)
Q Consensus 24 t~e~Vi~~L~~v~p~~s~~~A~~i~ 48 (90)
.++--+..|+..||+++.+....+-
T Consensus 8 ~~ee~l~~L~emFP~ld~~~I~~vL 32 (59)
T 1wgl_A 8 CSEEDLKAIQDMFPNMDQEVIRSVL 32 (59)
T ss_dssp SCHHHHHHHHHHCSSSCHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCCCHHHHHHHH
Confidence 3566788899999999998877643
No 61
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=34.65 E-value=21 Score=21.30 Aligned_cols=31 Identities=6% Similarity=0.057 Sum_probs=25.6
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHHh
Q 034596 5 RGTGSGDSYRVLLIDDTRHSEKLVAKVLPQV 35 (90)
Q Consensus 5 ~~~~~~~~y~ViL~NDd~~t~e~Vi~~L~~v 35 (90)
+.....+.++|++.+|+-...+.+...|.+.
T Consensus 13 ~~~~~~~~~~ilivdd~~~~~~~l~~~L~~~ 43 (146)
T 4dad_A 13 ENLYFQGMINILVASEDASRLAHLARLVGDA 43 (146)
T ss_dssp CCCCCGGGCEEEEECSCHHHHHHHHHHHHHH
T ss_pred CCCCcCCCCeEEEEeCCHHHHHHHHHHHhhC
Confidence 3455567899999999999999999888874
No 62
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=34.45 E-value=73 Score=27.04 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=28.6
Q ss_pred HhhCC-cEEEEeeeHHHHHHHHHHHhhcCCeeEEEe
Q 034596 51 SREHG-MAIVIVTVKEHAEFYAQMMVRGGLRSTIEP 85 (90)
Q Consensus 51 vH~~G-~a~v~~~~~e~AE~~~~~l~~~gL~~~iep 85 (90)
.|.+| ..+|++-+.+.||.++..|.+.|+.+.+--
T Consensus 470 ~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLh 505 (822)
T 3jux_A 470 RYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLN 505 (822)
T ss_dssp HHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEEC
T ss_pred HhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEee
Confidence 45455 578899999999999999999998877643
No 63
>1wcn_A Transcription elongation protein NUSA; RNA-binding protein, escherichia coli NUSA, transcription regulation, regulation of RNA binding; NMR {Escherichia coli} PDB: 2jzb_B
Probab=34.21 E-value=42 Score=19.37 Aligned_cols=34 Identities=15% Similarity=0.144 Sum_probs=26.4
Q ss_pred cCCCCCHHHH----HHHHHHhCCCCCHHHHHHHHHHHhh
Q 034596 19 DDTRHSEKLV----AKVLPQVVPSVTPDDARKLFHESRE 53 (90)
Q Consensus 19 NDd~~t~e~V----i~~L~~v~p~~s~~~A~~i~~~vH~ 53 (90)
...++|.+-+ ++-|..+. |+|+++|.+|-+.+..
T Consensus 25 e~Gi~TvedlA~~~~~eL~~i~-gise~kA~~ii~aAr~ 62 (70)
T 1wcn_A 25 ARGVCTLEDLAEQGIDDLADIE-GLTDEKAGALIMAARN 62 (70)
T ss_dssp TTTCCSHHHHHTSCHHHHHTSS-SCCHHHHHHHHHHHHH
T ss_pred HcCCCcHHHHHcCCHHHHHHcc-CCCHHHHHHHHHHHHH
Confidence 4456676666 45688888 9999999999998864
No 64
>2z01_A Phosphoribosylformylglycinamidine cyclo-ligase; alpha and beta proteins, cytoplasm, purine biosynthesis, structural genomics, NPPSFA; 2.20A {Geobacillus kaustophilus}
Probab=34.10 E-value=1.3e+02 Score=21.70 Aligned_cols=65 Identities=12% Similarity=0.086 Sum_probs=43.5
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 13 YRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 13 y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
..+.|.-|.+- ..-...-+++.+ +.+..+...+ =+.|..+|.+.+.+.++...+.+++.|+.+.+
T Consensus 266 vg~~I~~~~ip-~~~~~~~~~~~~-~~~~~~~~~~----~~~g~gll~~v~~~~~~~~~~~l~~~g~~~~~ 330 (348)
T 2z01_A 266 IGARIQLGSWP-ILPIFDFLREKG-SLEEEEMFSV----FNMGIGLVLAVSPETAAPLVEWLSERGEPAYI 330 (348)
T ss_dssp EEEEEETTSSC-CCHHHHHHHHHT-TCCHHHHHHH----SCTTEEEEEEECHHHHHHHHHHHHHTTCCCEE
T ss_pred ceEEEeccCCC-CCHHHHHHHHcC-CCCHHHHHHH----hCCCCeEEEEEcHHHHHHHHHHHHhcCCCeEE
Confidence 34444444443 222344566777 8887765432 26777899999999999999999988876654
No 65
>3p4e_A Phosphoribosylformylglycinamidine cyclo-ligase; structural genomics, center for structural genomics of infec diseases, csgid; HET: AMP CIT; 1.77A {Vibrio cholerae} PDB: 1cli_A
Probab=33.94 E-value=1.4e+02 Score=21.89 Aligned_cols=66 Identities=12% Similarity=0.175 Sum_probs=47.9
Q ss_pred ceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 12 SYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 12 ~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
...+.|.-|.+-..+ +...+++.. +.+..+.+. .=+.|.++|.+.+.+.++...+.++++|+.+.+
T Consensus 267 gvg~~Id~~~iP~~~-~~~~~~~~~-~~~~~e~~~----~~~~g~gll~~v~~~~~~~~~~~l~~~g~~a~v 332 (349)
T 3p4e_A 267 GTKAVIDGKSWEWPV-IFQWLQEKG-NVTTHEMYR----TFNCGVGLIIALPKDQANAAVALLQAEGETAWV 332 (349)
T ss_dssp TEEEEECTTSCCCCH-HHHHHHHHH-TCCHHHHHT----TSCTTEEEEEEECHHHHHHHHHHHHHTTCCEEE
T ss_pred CceEEEeccCCCCCH-HHHHHHHhc-CCCHHHHHH----hcCCCCcEEEEEcHHHHHHHHHHHHhcCCCeEE
Confidence 455566656554433 556677777 888866433 335688899999999999999999999987764
No 66
>2b67_A COG0778: nitroreductase; alpha-beta sandwich, FMN binding pocket, structural genomics protein structure initiative; HET: MSE FMN; 2.05A {Streptococcus pneumoniae} SCOP: d.90.1.1
Probab=33.87 E-value=35 Score=22.16 Aligned_cols=23 Identities=17% Similarity=0.196 Sum_probs=19.6
Q ss_pred HHHHHHHHhhCCcEEEEeeeHHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKEH 66 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e~ 66 (90)
+..+++.+|..|-+.|+.+.++.
T Consensus 139 ~~nl~LaA~~~Glgsc~~~~~~~ 161 (204)
T 2b67_A 139 AMNLVLALTDQGIGSNIILGFDK 161 (204)
T ss_dssp HHHHHHHHHHTTCEEEEECCBCH
T ss_pred HHHHHHHHHHCCCceeeEcccCH
Confidence 37899999999999999887653
No 67
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=33.87 E-value=34 Score=20.92 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=35.4
Q ss_pred CCHHHHHHHHHHHhhCCcEEEE---eeeHHHHHHHHHHHh--hcCCeeEEEeCC
Q 034596 39 VTPDDARKLFHESREHGMAIVI---VTVKEHAEFYAQMMV--RGGLRSTIEPDS 87 (90)
Q Consensus 39 ~s~~~A~~i~~~vH~~G~a~v~---~~~~e~AE~~~~~l~--~~gL~~~iep~~ 87 (90)
.+.++|.+|+.... +|++++. .-+.+.|++..+-+- .++|...|+..+
T Consensus 13 ~sy~Da~~I~d~Lr-~~~~VvvNL~~ld~~~AqRivDF~sG~~yal~G~i~kI~ 65 (87)
T 3p04_A 13 HSFEDAQVIGGAFR-DGDAVVFDMSLLSREEARRIVDFAAGLCFALHGKMQKID 65 (87)
T ss_dssp SSGGGHHHHHHHHH-TTCCEEEECTTSCHHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CcHHHHHHHHHHHH-CCCEEEEECCCCCHHHHHHHHHHhccceEEeccEEEEEc
Confidence 57788999988886 6777775 345788888888885 456777776543
No 68
>3gr3_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, flavoprotein; HET: MSE FMN UNL; 1.45A {Bartonella henselae str}
Probab=33.65 E-value=54 Score=21.95 Aligned_cols=23 Identities=9% Similarity=0.180 Sum_probs=20.2
Q ss_pred HHHHHHHHhhCCcEEEEeeeHHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKEH 66 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e~ 66 (90)
+.++++.+|..|-+.|+.+....
T Consensus 155 ~~nl~LaA~~~Glgs~~~~~~~~ 177 (230)
T 3gr3_A 155 MQTIMLAARGFGLDTCAQAAFAD 177 (230)
T ss_dssp HHHHHHHHHTTTCEEEEEGGGGG
T ss_pred HHHHHHHHHHCCCceeeeccccc
Confidence 78899999999999999887653
No 69
>3ge6_A Nitroreductase; structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2, oxidoreductase; HET: FMN; 1.85A {Exiguobacterium sibiricum 255-15} SCOP: d.90.1.0
Probab=33.03 E-value=38 Score=22.28 Aligned_cols=23 Identities=22% Similarity=0.234 Sum_probs=19.9
Q ss_pred HHHHHHHHhhCCcEEEEeeeHHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKEH 66 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e~ 66 (90)
|.++|+.++..|-+.|+.+.++.
T Consensus 146 ~~nl~LaA~~~Glgsc~i~~~~~ 168 (212)
T 3ge6_A 146 SMQLMLVARAHGYDTNPIGGYEK 168 (212)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCH
T ss_pred HHHHHHHHHHcCCCeeeecccCH
Confidence 55799999999999999988763
No 70
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=32.74 E-value=60 Score=25.52 Aligned_cols=33 Identities=9% Similarity=0.051 Sum_probs=27.8
Q ss_pred hhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEEE
Q 034596 52 REHGMAIVIVTVKEHAEFYAQMMVRGGLRSTIE 84 (90)
Q Consensus 52 H~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~ie 84 (90)
|..++++|...+++.|+..++.|+..|+.+..-
T Consensus 265 ~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~ 297 (591)
T 2v1x_A 265 YKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAY 297 (591)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEe
Confidence 456889999999999999999999888776543
No 71
>2v9y_A Phosphoribosylformylglycinamidine cyclo-ligase; multifunctional enzyme, structural genomics consortium, nucleotide-binding, purine biosynthesis; 2.10A {Homo sapiens}
Probab=32.70 E-value=1.1e+02 Score=22.08 Aligned_cols=64 Identities=17% Similarity=0.144 Sum_probs=41.1
Q ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 14 RVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 14 ~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
.+.+.-|.+-..+- +..+++.+ +.+..+... +=+.|..++.+.+.+.++...+.+++.|+.+++
T Consensus 239 g~~I~~~~iP~~~~-~~~~~~~~-~~~~~~~~~----~~~~g~gll~~v~~~~~~~~~~~l~~~g~~~~~ 302 (334)
T 2v9y_A 239 GVDLDAQTWRIPRV-FSWLQQEG-HLSEEEMAR----TFNCGVGAVLVVSKEQTEQILRGIQQHKEEAWV 302 (334)
T ss_dssp EEEEEGGGSCCCHH-HHHHHHHH-TCCHHHHHH----HCCTTEEEEEEECGGGHHHHHHHHHHTTCCEEE
T ss_pred EEEEecccCCCcHH-HHHHHHhc-CCCHHHHHH----HhCCCCCEEEEECHHHHHHHHHHHHhcCCCeEE
Confidence 34443343332233 33455666 677655322 236777799999999999999999988877654
No 72
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=32.28 E-value=96 Score=21.94 Aligned_cols=33 Identities=9% Similarity=0.210 Sum_probs=27.2
Q ss_pred HhhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 51 SREHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 51 vH~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
.+..|+++|....++.|+.+++.|...|+.+..
T Consensus 273 ~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~ 305 (410)
T 2j0s_A 273 TLTITQAVIFCNTKRKVDWLTEKMREANFTVSS 305 (410)
T ss_dssp HHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEE
T ss_pred hcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEE
Confidence 345688999999999999999999988876654
No 73
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=31.73 E-value=73 Score=22.09 Aligned_cols=32 Identities=22% Similarity=0.271 Sum_probs=27.1
Q ss_pred hCCcEEEEeeeHHHHHHHHHHHhhcCCeeEEE
Q 034596 53 EHGMAIVIVTVKEHAEFYAQMMVRGGLRSTIE 84 (90)
Q Consensus 53 ~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~ie 84 (90)
..|+++|....++.|+..++.|+..|..+..-
T Consensus 242 ~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~ 273 (395)
T 3pey_A 242 TIGSSIIFVATKKTANVLYGKLKSEGHEVSIL 273 (395)
T ss_dssp TSSEEEEECSCHHHHHHHHHHHHHTTCCCEEE
T ss_pred cCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEe
Confidence 56899999999999999999999888766543
No 74
>3h4o_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.50A {Clostridium difficile 630} PDB: 3koq_A*
Probab=31.55 E-value=41 Score=22.28 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.4
Q ss_pred HHHHHHHHhhCCcEEEEeeeHHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKEH 66 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e~ 66 (90)
+.++++.++..|-+.|+.+.++.
T Consensus 119 ~~nl~LaA~~lGLgsc~~~~~~~ 141 (191)
T 3h4o_A 119 TDHMMLQATELGLASVWVCYFNP 141 (191)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCH
T ss_pred HHHHHHHHHHCCCCEEEEcccCH
Confidence 68999999999999999887754
No 75
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=31.38 E-value=16 Score=20.87 Aligned_cols=69 Identities=12% Similarity=0.051 Sum_probs=40.2
Q ss_pred CCCCceEEEEEc-CCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhh
Q 034596 8 GSGDSYRVLLID-DTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVR 76 (90)
Q Consensus 8 ~~~~~y~ViL~N-Dd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~ 76 (90)
..++..+|.+-| +.-.+-+-+...|.++|.....=....+...-...|-|.|--.+.+.|+.....|.+
T Consensus 4 ~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g 73 (97)
T 1nu4_A 4 ETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQG 73 (97)
T ss_dssp --CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCC
Confidence 456677888888 344455556534444441111000001111235679999999999999999888864
No 76
>3ptw_A Malonyl COA-acyl carrier protein transacylase; structural genomics, protein structure initiative; 2.10A {Clostridium perfringens}
Probab=31.16 E-value=1.5e+02 Score=21.50 Aligned_cols=48 Identities=23% Similarity=0.236 Sum_probs=35.4
Q ss_pred CCCHHHHHHHHHHHhhCC----------cEEEEeeeHHHHHHHHHHHhhcCCeeEEEe
Q 034596 38 SVTPDDARKLFHESREHG----------MAIVIVTVKEHAEFYAQMMVRGGLRSTIEP 85 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~~G----------~a~v~~~~~e~AE~~~~~l~~~gL~~~iep 85 (90)
+.+.++..++.......| ..+|..|+.+.-+...+.|+..|.++..-|
T Consensus 136 ~~~~~~v~~~l~~~~~~~~v~iA~~Nsp~~~VisG~~~al~~~~~~l~~~g~~~~~L~ 193 (336)
T 3ptw_A 136 RMTPEQVDEIIEKSSPYGIVEGANYNSPGQIVISGELVALEKAMEFIKEVGGRAIKLP 193 (336)
T ss_dssp SCCHHHHHHHHHHHGGGSCEEEEEEEETTEEEEEEEHHHHHHHHHHHHHTTCEEEECS
T ss_pred CCCHHHHHHHHHhcccCCeEEEEEEecCCcEEEEcCHHHHHHHHHHHHhcCCcEEECC
Confidence 677888777776665444 456778888888888889988887766544
No 77
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=31.06 E-value=27 Score=20.54 Aligned_cols=42 Identities=24% Similarity=0.215 Sum_probs=29.1
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHhCCCC------CHHHHHHHHH
Q 034596 6 GTGSGDSYRVLLIDDTRHSEKLVAKVLPQVVPSV------TPDDARKLFH 49 (90)
Q Consensus 6 ~~~~~~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~------s~~~A~~i~~ 49 (90)
+......++|++.+||-...+.+...|.. . |+ +.++|.+...
T Consensus 12 ~~~~~~~~~ilivdd~~~~~~~l~~~L~~-~-g~~v~~~~~~~~al~~l~ 59 (137)
T 2pln_A 12 SLVPRGSMRVLLIEKNSVLGGEIEKGLNV-K-GFMADVTESLEDGEYLMD 59 (137)
T ss_dssp ---CTTCSEEEEECSCHHHHHHHHHHHHH-T-TCEEEEESCHHHHHHHHH
T ss_pred cccCCCCCeEEEEeCCHHHHHHHHHHHHH-c-CcEEEEeCCHHHHHHHHH
Confidence 34455778999999999999999888887 3 43 4566665443
No 78
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=30.62 E-value=74 Score=24.38 Aligned_cols=33 Identities=12% Similarity=0.132 Sum_probs=27.5
Q ss_pred hhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEEE
Q 034596 52 REHGMAIVIVTVKEHAEFYAQMMVRGGLRSTIE 84 (90)
Q Consensus 52 H~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~ie 84 (90)
|..++++|...+++.||..++.|+..|+.+..-
T Consensus 234 ~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~ 266 (523)
T 1oyw_A 234 QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAY 266 (523)
T ss_dssp TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEe
Confidence 456789999999999999999999888776543
No 79
>3gfa_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN GOL; 1.35A {Clostridium difficile 630}
Probab=30.05 E-value=58 Score=20.96 Aligned_cols=23 Identities=9% Similarity=0.073 Sum_probs=19.4
Q ss_pred HHHHHHHHhhCCcEEEEe--eeHHH
Q 034596 44 ARKLFHESREHGMAIVIV--TVKEH 66 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~--~~~e~ 66 (90)
+.++++.+|..|-+.|+. +.++.
T Consensus 133 ~~nl~LaA~~~Glgs~~~~~~~~~~ 157 (198)
T 3gfa_A 133 IQNMSLTAVELGLGSLWICDVYFAY 157 (198)
T ss_dssp HHHHHHHHHHTTCEEEEECGGGGGH
T ss_pred HHHHHHHHHHCCCeeeeecCcccCc
Confidence 688999999999999998 55543
No 80
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=29.71 E-value=94 Score=21.84 Aligned_cols=33 Identities=15% Similarity=0.188 Sum_probs=27.2
Q ss_pred hhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEEE
Q 034596 52 REHGMAIVIVTVKEHAEFYAQMMVRGGLRSTIE 84 (90)
Q Consensus 52 H~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~ie 84 (90)
+..|+++|..-.++.|+.+++.|...|+.+..-
T Consensus 256 ~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 288 (400)
T 1s2m_A 256 LQINQAIIFCNSTNRVELLAKKITDLGYSCYYS 288 (400)
T ss_dssp SCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEE
T ss_pred cCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEe
Confidence 456889999999999999999999888766543
No 81
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=29.22 E-value=93 Score=21.96 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=26.3
Q ss_pred hCCcEEEEeeeHHHHHHHHHHHhhcCCeeEEE
Q 034596 53 EHGMAIVIVTVKEHAEFYAQMMVRGGLRSTIE 84 (90)
Q Consensus 53 ~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~ie 84 (90)
..++++|..-.++.|+..++.|...|+.+..-
T Consensus 275 ~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~ 306 (417)
T 2i4i_A 275 KDSLTLVFVETKKGADSLEDFLYHEGYACTSI 306 (417)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCCeeEe
Confidence 46788999999999999999999888766543
No 82
>1wcw_A Uroporphyrinogen III synthase; congenital erythropoietic porph structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.30A {Thermus thermophilus} PDB: 1wd7_A 1wcx_A
Probab=28.27 E-value=53 Score=22.31 Aligned_cols=31 Identities=10% Similarity=0.283 Sum_probs=24.6
Q ss_pred CCcEEEEeeeHHHHHHHHHHHhhcCCeeEEEe
Q 034596 54 HGMAIVIVTVKEHAEFYAQMMVRGGLRSTIEP 85 (90)
Q Consensus 54 ~G~a~v~~~~~e~AE~~~~~l~~~gL~~~iep 85 (90)
.|+-++.+.+++ ++.+++.|++.|..+..-|
T Consensus 7 ~g~~vlvtr~~~-~~~l~~~L~~~G~~~~~~P 37 (261)
T 1wcw_A 7 DAVRVAYAGLRR-KEAFKALAEKLGFTPLLFP 37 (261)
T ss_dssp -CCEEEECCSTT-HHHHHHHHHHTTCEEEECC
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHCCCcEEEec
Confidence 588888888887 9999999999996654433
No 83
>1p3q_Q VPS9P, vacuolar protein sorting-associated protein VPS9; trafficking, post translational modification, mono- ubiquitination; 1.70A {Saccharomyces cerevisiae} SCOP: a.5.2.4 PDB: 1mn3_A
Probab=28.23 E-value=54 Score=18.45 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=17.5
Q ss_pred HHHHHHHHHHhCCCCCHHHHHH
Q 034596 25 EKLVAKVLPQVVPSVTPDDARK 46 (90)
Q Consensus 25 ~e~Vi~~L~~v~p~~s~~~A~~ 46 (90)
++-++..|...||.++.+==..
T Consensus 12 ~~~~~~~L~~MFP~lD~evI~~ 33 (54)
T 1p3q_Q 12 RKDTLNTLQNMFPDMDPSLIED 33 (54)
T ss_dssp HHHHHHHHHHHSTTSCHHHHHH
T ss_pred HHHHHHHHHHHcccCCHHHHHH
Confidence 4567899999999999876444
No 84
>1fsh_A Dishevelled-1; three-helix bundle, beta-ARM, signaling protein; NMR {Mus musculus} SCOP: a.4.5.31
Probab=28.04 E-value=55 Score=20.22 Aligned_cols=45 Identities=18% Similarity=0.170 Sum_probs=24.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCC
Q 034596 11 DSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHG 55 (90)
Q Consensus 11 ~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G 55 (90)
..|....+..-+.-.|.|-..+...=--.|+++|..++...-.+|
T Consensus 40 r~~~~~~~~~~F~G~dlVdWL~~~~~~~~~r~eAv~lg~~Ll~~G 84 (105)
T 1fsh_A 40 RMWLKITIANAVIGADVVDWLYTHVEGFKERREARKYASSMLKHG 84 (105)
T ss_dssp EEETTEEESSCCHHHHHHHHHHHHCCCCSSHHHHHHHHHHHHHTT
T ss_pred eEeCCEECCceeEcHHHHHHHHHhCcCCCCHHHHHHHHHHHHHCC
Confidence 445566777777766666555554310156666665555544444
No 85
>3e39_A Putative nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN PGE; 1.70A {Desulfovibrio desulfuricans subsp}
Probab=27.91 E-value=70 Score=20.48 Aligned_cols=19 Identities=5% Similarity=0.158 Sum_probs=17.8
Q ss_pred HHHHHHHHhhCCcEEEEee
Q 034596 44 ARKLFHESREHGMAIVIVT 62 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~ 62 (90)
+.++++.++..|-+.|+.+
T Consensus 105 ~~nl~LaA~~~Glgs~~~~ 123 (178)
T 3e39_A 105 VQNMLLAAHALQLGAVWLG 123 (178)
T ss_dssp HHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHHHHHHcCCeEEEec
Confidence 7789999999999999998
No 86
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=27.69 E-value=1.2e+02 Score=21.13 Aligned_cols=32 Identities=13% Similarity=0.270 Sum_probs=26.9
Q ss_pred hhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 52 REHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 52 H~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
+..|+++|..-.++.|+..+..|...|..+..
T Consensus 264 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~ 295 (412)
T 3fht_A 264 ITIAQAMIFCHTRKTASWLAAELSKEGHQVAL 295 (412)
T ss_dssp HSSSEEEEECSSHHHHHHHHHHHHHTTCCCEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEE
Confidence 45689999999999999999999988876654
No 87
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=27.59 E-value=1.1e+02 Score=24.30 Aligned_cols=34 Identities=21% Similarity=0.236 Sum_probs=28.7
Q ss_pred HhhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEEE
Q 034596 51 SREHGMAIVIVTVKEHAEFYAQMMVRGGLRSTIE 84 (90)
Q Consensus 51 vH~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~ie 84 (90)
....++++|.+.++..|+..++.|...|+.+..-
T Consensus 436 ~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~l 469 (664)
T 1c4o_A 436 AARGERTLVTVLTVRMAEELTSFLVEHGIRARYL 469 (664)
T ss_dssp HHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred HhcCCEEEEEECCHHHHHHHHHHHHhcCCCceee
Confidence 3456788999999999999999999999887653
No 88
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=27.49 E-value=1.7e+02 Score=20.91 Aligned_cols=30 Identities=7% Similarity=0.019 Sum_probs=26.6
Q ss_pred hCCcEEEEeeeHHHHHHHHHHHhhcCCeeE
Q 034596 53 EHGMAIVIVTVKEHAEFYAQMMVRGGLRST 82 (90)
Q Consensus 53 ~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~ 82 (90)
..++++|..-.++.|+..+..|+..|+.+.
T Consensus 251 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~ 280 (414)
T 3oiy_A 251 FRDGILIFAQTEEEGKELYEYLKRFKFNVG 280 (414)
T ss_dssp HCSSEEEEESSHHHHHHHHHHHHHTTCCEE
T ss_pred cCCCEEEEECCHHHHHHHHHHHHHcCCcee
Confidence 358999999999999999999999988775
No 89
>1v95_A Nuclear receptor coactivator 5; coactivator independent of AF-2 function (CIA), structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: c.51.1.1
Probab=27.36 E-value=57 Score=21.32 Aligned_cols=23 Identities=17% Similarity=0.060 Sum_probs=19.4
Q ss_pred eHHHHHHHHHHHhhcCCeeEEEe
Q 034596 63 VKEHAEFYAQMMVRGGLRSTIEP 85 (90)
Q Consensus 63 ~~e~AE~~~~~l~~~gL~~~iep 85 (90)
..+-|+....+|+..|+++.+--
T Consensus 20 ~~~YA~~V~~~L~~~GiRvevD~ 42 (130)
T 1v95_A 20 TKDYAESVGRKVRDLGMVVDLIF 42 (130)
T ss_dssp GGHHHHHHHHHHHTTTCCEEEEE
T ss_pred hHHHHHHHHHHHHHCCCEEEEec
Confidence 46789999999999999998854
No 90
>3iz6_M 40S ribosomal protein S18 (S13P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.95 E-value=19 Score=24.38 Aligned_cols=66 Identities=5% Similarity=-0.073 Sum_probs=59.0
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhh
Q 034596 10 GDSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVR 76 (90)
Q Consensus 10 ~~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~ 76 (90)
.-.|-|.+.|=|+..-.-|...|..++ |.....|..|...+.-....-++.-+-++-+...+.+.+
T Consensus 8 ~~~~m~RI~g~~i~~~k~v~~ALt~I~-GIG~~~A~~I~~~~gid~~~r~g~Lt~~ei~~l~~~i~~ 73 (152)
T 3iz6_M 8 EFQHILRVLNTNVDGKQKIMFALTSIK-GVGRRFSNIVCKKADIDMNKRAGELSAEEMDRLMAVVHN 73 (152)
T ss_dssp SCCCCCCTTTTCCCCSSBHHHHHTTST-TCCHHHHHHHHHHHTCCSSSBTTTSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHcCCcCCCCcEeHhhhhhcc-CcCHHHHHHHHHHcCCCCCcEeCcCCHHHHHHHHHHHHh
Confidence 355777888888888899999999999 999999999999999999999999999999988888864
No 91
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=26.82 E-value=54 Score=19.35 Aligned_cols=42 Identities=17% Similarity=0.203 Sum_probs=28.5
Q ss_pred CCCceEEEEEcCCCCCHHHHHHHHHHh----CCCCCHHHHHHHHHH
Q 034596 9 SGDSYRVLLIDDTRHSEKLVAKVLPQV----VPSVTPDDARKLFHE 50 (90)
Q Consensus 9 ~~~~y~ViL~NDd~~t~e~Vi~~L~~v----~p~~s~~~A~~i~~~ 50 (90)
.....+|++.+|+-...+.+...|... .---+.++|.+....
T Consensus 5 ~~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~~ 50 (147)
T 2zay_A 5 EGKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAVK 50 (147)
T ss_dssp ---CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHHH
T ss_pred cCCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHHc
Confidence 356789999999999999999998863 101355666665543
No 92
>3gag_A Putative NADH dehydrogenase, NADPH nitroreductase; FMN-dependent nitroreductase-like fold, structural genomics; HET: MSE FMN; 1.70A {Streptococcus mutans} SCOP: d.90.1.0
Probab=26.52 E-value=32 Score=22.52 Aligned_cols=23 Identities=22% Similarity=0.148 Sum_probs=19.9
Q ss_pred HHHHHHHHhhCCcEEEEeeeHHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKEH 66 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e~ 66 (90)
+.++|+.++..|-+.|+.+.++.
T Consensus 140 ~~nl~LaA~~~Glgsc~~~~~~~ 162 (206)
T 3gag_A 140 AMNLMQVVRVYGYDSVPMRGVDF 162 (206)
T ss_dssp HHHHHHHHHHTTCEECCBCCSCH
T ss_pred HHHHHHHHHHcCCCeeeecccCH
Confidence 56899999999999999887753
No 93
>1vhu_A Hypothetical protein AF1521; structural genomics, unknown function; HET: MSE MES; 1.34A {Archaeoglobus fulgidus} SCOP: c.50.1.2 PDB: 2bfq_A* 1hjz_A* 2bfr_A*
Probab=26.46 E-value=1.4e+02 Score=20.40 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=30.5
Q ss_pred hCCCCCHHHHHHHHHHHhhC------CcEEEEeeeHHHHHHHHHHHhhc
Q 034596 35 VVPSVTPDDARKLFHESREH------GMAIVIVTVKEHAEFYAQMMVRG 77 (90)
Q Consensus 35 v~p~~s~~~A~~i~~~vH~~------G~a~v~~~~~e~AE~~~~~l~~~ 77 (90)
++ |.+.++|.++|+++=.+ -+-.+..++.+..+.|.+.|..+
T Consensus 153 ~~-G~p~~~aa~i~~~~v~~~l~~~l~~V~~v~~~~~~~~~~~~~l~~~ 200 (211)
T 1vhu_A 153 IY-GCDLEKVVETFLEAVKNFKGSAVKEVALVIYDRKSAEVALKVFERS 200 (211)
T ss_dssp TT-CCCHHHHHHHHHHHHHHCCCSSCCEEEEEESSHHHHHHHHHHHHHH
T ss_pred CC-CCCHHHHHHHHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh
Confidence 35 78999999999777655 34444577788888888877644
No 94
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=26.40 E-value=29 Score=20.94 Aligned_cols=43 Identities=16% Similarity=0.222 Sum_probs=26.7
Q ss_pred CCCCCCceEEEEEcCCCCCHHHHHHHHHHhCC------CCCHHHHHHHH
Q 034596 6 GTGSGDSYRVLLIDDTRHSEKLVAKVLPQVVP------SVTPDDARKLF 48 (90)
Q Consensus 6 ~~~~~~~y~ViL~NDd~~t~e~Vi~~L~~v~p------~~s~~~A~~i~ 48 (90)
......+.+|++.+|+....+.+...|...-. --+.++|.+..
T Consensus 14 ~~~~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l 62 (150)
T 4e7p_A 14 LVPRGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLL 62 (150)
T ss_dssp ------CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH
T ss_pred CCCCCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHh
Confidence 34555789999999999988888888875320 12566665543
No 95
>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A
Probab=26.27 E-value=1.8e+02 Score=20.92 Aligned_cols=39 Identities=18% Similarity=0.173 Sum_probs=29.8
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEee
Q 034596 11 DSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVT 62 (90)
Q Consensus 11 ~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~ 62 (90)
..+|+.+|+|+... ..+.+....++..++..|.-++...
T Consensus 42 n~vRlri~v~P~~g-------------~~d~~~~~~~~~~ak~~Gl~v~ld~ 80 (334)
T 1fob_A 42 NSIRQRVWVNPSDG-------------SYDLDYNLELAKRVKAAGMSLYLDL 80 (334)
T ss_dssp CEEEEEECSCCTTC-------------TTCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CEEEEEEEECCCCC-------------ccCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34778888887621 2567888889999999999988774
No 96
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=26.16 E-value=1.7e+02 Score=20.47 Aligned_cols=32 Identities=19% Similarity=0.375 Sum_probs=27.7
Q ss_pred hhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 52 REHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 52 H~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
...++++|+.-.++.|+...+.|...|+.+..
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~ 390 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKDGIKAKR 390 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCCeEEEEEccHHHHHHHHHHHHHcCCCcEE
Confidence 35889999999999999999999988877654
No 97
>3mw8_A Uroporphyrinogen-III synthase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, lyase; 1.65A {Shewanella amazonensis}
Probab=26.08 E-value=25 Score=23.81 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=25.2
Q ss_pred CcEEEEeeeHHHHHHHHHHHhhcCCeeEEEe
Q 034596 55 GMAIVIVTVKEHAEFYAQMMVRGGLRSTIEP 85 (90)
Q Consensus 55 G~a~v~~~~~e~AE~~~~~l~~~gL~~~iep 85 (90)
|+-++.+-+.+.++..++.|++.|..+...|
T Consensus 1 G~~vlvtRp~~~~~~l~~~L~~~G~~~~~~P 31 (240)
T 3mw8_A 1 GMKLLLTRPEGKNAAMASALDALAIPYLVEP 31 (240)
T ss_dssp CCCEEECSCTTSCHHHHHHHHHHTCCEEECC
T ss_pred CCEEEEeCChHHhHHHHHHHHHCCCcEEEeC
Confidence 7778888899999999999999986664443
No 98
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=26.08 E-value=34 Score=20.39 Aligned_cols=31 Identities=19% Similarity=0.428 Sum_probs=22.3
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHHh
Q 034596 5 RGTGSGDSYRVLLIDDTRHSEKLVAKVLPQV 35 (90)
Q Consensus 5 ~~~~~~~~y~ViL~NDd~~t~e~Vi~~L~~v 35 (90)
+....+++.+|++.+|+-...+.+...|.+.
T Consensus 6 ~~~~~~~~~~vlivdd~~~~~~~l~~~L~~~ 36 (145)
T 3kyj_B 6 HHHHHGSPYNVMIVDDAAMMRLYIASFIKTL 36 (145)
T ss_dssp -----CCSEEEEEECSCHHHHHHHHHHHTTC
T ss_pred cCCCCCCCCeEEEEcCCHHHHHHHHHHHHhC
Confidence 4556678899999999988888888888763
No 99
>2dx6_A Hypothetical protein TTHA0132; conserved hypothetical protein, structural genomics, NPPSFA; 1.78A {Thermus thermophilus} PDB: 3v45_A
Probab=26.05 E-value=1.3e+02 Score=19.38 Aligned_cols=35 Identities=11% Similarity=0.059 Sum_probs=20.6
Q ss_pred CCCHHHHHHHHHHHhhC----CcEEEEeeeHHHHHHHHH
Q 034596 38 SVTPDDARKLFHESREH----GMAIVIVTVKEHAEFYAQ 72 (90)
Q Consensus 38 ~~s~~~A~~i~~~vH~~----G~a~v~~~~~e~AE~~~~ 72 (90)
|.+.++|.++|.++=.+ -+-.+..++.+..+.|.+
T Consensus 119 g~p~~~~a~i~~~~~~~~~~~~~V~~v~~~~~~~~~~~~ 157 (159)
T 2dx6_A 119 GLPVEAVARVMLEEIKKAPDTLEVTLYGYREEDAEAIRR 157 (159)
T ss_dssp CCCHHHHHHHHHHHHTTSCTTCEEEEEESSHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 66777777777776655 233334555555555443
No 100
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A*
Probab=25.98 E-value=1e+02 Score=22.86 Aligned_cols=46 Identities=22% Similarity=0.216 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhCCc---EEEE-eeeHHHHHHHHHHHhhcCCeeEEEeCC
Q 034596 42 DDARKLFHESREHGM---AIVI-VTVKEHAEFYAQMMVRGGLRSTIEPDS 87 (90)
Q Consensus 42 ~~A~~i~~~vH~~G~---a~v~-~~~~e~AE~~~~~l~~~gL~~~iep~~ 87 (90)
.-|..+...+|.+|+ .+|. +-|+-.-...+..|...|+.+++.+|+
T Consensus 152 ~tvl~~l~~A~~~gk~~~V~v~EtRP~~qGrltA~eL~~~GI~vtlI~Ds 201 (338)
T 3a11_A 152 KAAISVMKTAWEQGKDIKVIVTETRPKWQGKITAKELASYGIPVIYVVDS 201 (338)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEECCTTTTHHHHHHHHHHHTTCCEEEECGG
T ss_pred HHHHHHHHHHHHCCCeEEEEEeCCCCchhhHHHHHHHHhCCCCEEEEehH
Confidence 557778888999987 3333 334445567788899999999999885
No 101
>1vfr_A NAD(P)H\:FMN oxidoreductase; bioluminescence; HET: FMN; 1.80A {Aliivibrio fischeri} SCOP: d.90.1.1 PDB: 1v5y_A* 1v5z_A*
Probab=25.96 E-value=48 Score=21.60 Aligned_cols=22 Identities=5% Similarity=0.004 Sum_probs=19.6
Q ss_pred HHHHHHHHhhCCcEEEEeeeHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKE 65 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e 65 (90)
+.++++.+|..|-+.|+.+.++
T Consensus 147 ~~nl~LaA~~~Glgs~~~~~~~ 168 (218)
T 1vfr_A 147 LGNALHTLARLNIDSTTMEGID 168 (218)
T ss_dssp HHHHHHHHHHHTCEEEEECCSC
T ss_pred HHHHHHHHHHcCCCcccccccC
Confidence 6899999999999999988764
No 102
>3ge5_A Putative NAD(P)H:FMN oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: FMN UNL; 1.70A {Porphyromonas gingivalis W83}
Probab=25.81 E-value=59 Score=21.70 Aligned_cols=23 Identities=13% Similarity=0.201 Sum_probs=20.3
Q ss_pred HHHHHHHHhhCCcEEEEeeeHHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKEH 66 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e~ 66 (90)
+..+++.++..|-+.|+.+.++.
T Consensus 128 ~~nl~LaA~~lGLgsc~~~~~~~ 150 (198)
T 3ge5_A 128 MTYMMLEAHSLGLGCTWVCAFDQ 150 (198)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCH
T ss_pred HHHHHHHHHHCCCCEEEECccCH
Confidence 68899999999999999888754
No 103
>1wyz_A Putative S-adenosylmethionine-dependent methyltra; northeast structural genomics consortium, BTR28, methyltrans PSI; 2.50A {Bacteroides thetaiotaomicron} SCOP: c.90.1.1
Probab=25.72 E-value=1.3e+02 Score=20.67 Aligned_cols=46 Identities=7% Similarity=0.042 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhhCCcEEEEeee------HHHHHHHHHHHhhcCCeeEEEeC
Q 034596 41 PDDARKLFHESREHGMAIVIVTV------KEHAEFYAQMMVRGGLRSTIEPD 86 (90)
Q Consensus 41 ~~~A~~i~~~vH~~G~a~v~~~~------~e~AE~~~~~l~~~gL~~~iep~ 86 (90)
.++..+.+.+.-.+|+-+|.... ++..-.....+++.|+.+.+.|.
T Consensus 69 ~~~~~~~i~~~~~~G~~Va~ls~~GdP~i~~~g~~l~~~l~~~gi~vevIPG 120 (242)
T 1wyz_A 69 SPEDISGYLKPLAGGASMGVISEAGCPAVADPGADVVAIAQRQKLKVIPLVG 120 (242)
T ss_dssp CHHHHHHHHHHHHTTCCEEEECC-------CHHHHHHHHHHHTTCCEEECCC
T ss_pred HHHHHHHHHHHHHcCCEEEEEecCCCCcccCcHHHHHHHHHHCCCCEEEeCc
Confidence 34444556666677887776533 44444455667778999888885
No 104
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=25.72 E-value=1.2e+02 Score=24.24 Aligned_cols=33 Identities=12% Similarity=0.139 Sum_probs=28.1
Q ss_pred hhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEEE
Q 034596 52 REHGMAIVIVTVKEHAEFYAQMMVRGGLRSTIE 84 (90)
Q Consensus 52 H~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~ie 84 (90)
...++++|.+.++..|+..++.|...|+.+..-
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~l 475 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYL 475 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEE
Confidence 356688899999999999999999999887653
No 105
>3of4_A Nitroreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, oxidoreductase; HET: FMN UNL FAD; 1.90A {Idiomarina loihiensis} SCOP: d.90.1.0
Probab=25.54 E-value=34 Score=22.83 Aligned_cols=22 Identities=9% Similarity=-0.028 Sum_probs=19.8
Q ss_pred HHHHHHHHhhCCcEEEEeeeHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKE 65 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e 65 (90)
+.++|+.+|..|-+.|+.+.++
T Consensus 139 ~~nl~LaA~~~Glgsc~i~g~~ 160 (209)
T 3of4_A 139 LGTFLLAAAELEVDSCPMEGIE 160 (209)
T ss_dssp HHHHHHHHHHTTCEECCBCCSC
T ss_pred HHHHHHHHHHcCCCeeeecccC
Confidence 6789999999999999988775
No 106
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=25.42 E-value=92 Score=21.89 Aligned_cols=32 Identities=6% Similarity=0.209 Sum_probs=24.6
Q ss_pred hhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 52 REHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 52 H~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
+..|+++|....++.|+..++.|...|+.+..
T Consensus 278 ~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~ 309 (414)
T 3eiq_A 278 LTITQAVIFINTRRKVDWLTEKMHARDFTVSA 309 (414)
T ss_dssp SCCSSCEEECSCHHHHHHHHHHHHTTTCCCEE
T ss_pred CCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEE
Confidence 34578888888899999888888877765543
No 107
>3ek3_A Nitroreductase; YP_211706.1, structural genom joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: FMN MPD; 1.70A {Bacteroides fragilis nctc 9343}
Probab=25.25 E-value=58 Score=20.98 Aligned_cols=20 Identities=15% Similarity=0.293 Sum_probs=18.4
Q ss_pred HHHHHHHHhhCCcEEEEeee
Q 034596 44 ARKLFHESREHGMAIVIVTV 63 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~ 63 (90)
+.++++.+|..|-+.|+.+.
T Consensus 117 ~~nl~LaA~~~Glgs~~~~~ 136 (190)
T 3ek3_A 117 IENMFLAATSLGIASCWINQ 136 (190)
T ss_dssp HHHHHHHHHHTTCEEEEECT
T ss_pred HHHHHHHHHHCCCceEEecc
Confidence 78999999999999999875
No 108
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=25.24 E-value=78 Score=18.33 Aligned_cols=25 Identities=8% Similarity=0.005 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHhCCCCCHHHHHHH
Q 034596 23 HSEKLVAKVLPQVVPSVTPDDARKL 47 (90)
Q Consensus 23 ~t~e~Vi~~L~~v~p~~s~~~A~~i 47 (90)
-+++-.+..|+..||.++.+--..+
T Consensus 16 ~~~~~~v~~L~~MFP~lD~~vI~~v 40 (67)
T 2dhy_A 16 LEFNQAMDDFKTMFPNMDYDIIECV 40 (67)
T ss_dssp CCSHHHHHHHHHHCSSSCHHHHHHH
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHH
Confidence 5678889999999999998876554
No 109
>3qdl_A Oxygen-insensitive NADPH nitroreductase; oxidoreductase; HET: FMN; 2.00A {Helicobacter pylori}
Probab=25.19 E-value=50 Score=21.81 Aligned_cols=23 Identities=9% Similarity=0.053 Sum_probs=20.2
Q ss_pred HHHHHHHHhhCCcEEEEeeeHHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKEH 66 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e~ 66 (90)
+..+++.++..|-+.|+.+.++.
T Consensus 144 ~~~~~LaA~~~Glgs~~~~~~~~ 166 (210)
T 3qdl_A 144 VGQICMGVSLMGLDSCIIGGFDP 166 (210)
T ss_dssp HHHHHHHHHHHTCEEEEECCSCH
T ss_pred HHHHHHHHHHcCCCceeecccCH
Confidence 57899999999999999888763
No 110
>1nox_A NADH oxidase; flavoenzyme, flavoprotein FMN, oxidoreductase, thermophIle; HET: FMN; 1.59A {Thermus thermophilus} SCOP: d.90.1.1
Probab=25.18 E-value=63 Score=20.85 Aligned_cols=22 Identities=14% Similarity=-0.022 Sum_probs=19.2
Q ss_pred HHHHHHHHhhCCcEEEEeeeHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKE 65 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e 65 (90)
+..+++.++..|-+.|+.+.++
T Consensus 140 ~~nl~LaA~~~Glgs~~~~~~~ 161 (205)
T 1nox_A 140 LGYLLLLLEAYGLGSVPMLGFD 161 (205)
T ss_dssp HHHHHHHHHHTTCEEEEECCSC
T ss_pred HHHHHHHHHHcCCCcccccCCC
Confidence 5789999999999999988654
No 111
>3bem_A Putative NAD(P)H nitroreductase YDFN; 2632848, putative nitroreductase YDFN, structural genomics, center for structural genomics, JCSG; HET: MSE FMN; 1.65A {Bacillus subtilis}
Probab=25.09 E-value=62 Score=21.38 Aligned_cols=22 Identities=9% Similarity=0.004 Sum_probs=19.3
Q ss_pred HHHHHHHHhhCCcEEEEeeeHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKE 65 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e 65 (90)
+..+++.++..|-+.|+.+.++
T Consensus 151 ~~nl~LaA~~lGLgsc~~~~~~ 172 (218)
T 3bem_A 151 AMMFMLSAAAAGWDTCPMIGFD 172 (218)
T ss_dssp HHHHHHHHHHTTCEEEEECCSC
T ss_pred HHHHHHHHHHcCCCcccccCcC
Confidence 4789999999999999988764
No 112
>3m5k_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structural genomics, joint center for structural genomics; HET: MSE FMN; 1.86A {Parabacteroides distasonis}
Probab=24.65 E-value=54 Score=20.96 Aligned_cols=24 Identities=17% Similarity=0.245 Sum_probs=20.3
Q ss_pred HHHHHHHHHhhCCcEEEEeeeHHH
Q 034596 43 DARKLFHESREHGMAIVIVTVKEH 66 (90)
Q Consensus 43 ~A~~i~~~vH~~G~a~v~~~~~e~ 66 (90)
-+.++++.++..|-+.|+.+.+..
T Consensus 101 a~~nl~LaA~~~Glgt~~~~~~~~ 124 (172)
T 3m5k_A 101 ASQNLLLAAESMGLGAVWTAVYPY 124 (172)
T ss_dssp HHHHHHHHHHHTTCEECCEECTTC
T ss_pred HHHHHHHHHHHcCCeEEEecccCc
Confidence 368899999999999999887654
No 113
>2i7h_A Nitroreductase-like family protein; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE FMN; 2.30A {Bacillus cereus}
Probab=24.31 E-value=63 Score=20.66 Aligned_cols=20 Identities=15% Similarity=0.117 Sum_probs=17.4
Q ss_pred HHHHHHHHhhCCcEEEEeee
Q 034596 44 ARKLFHESREHGMAIVIVTV 63 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~ 63 (90)
+.++++.++..|-+.|+.+.
T Consensus 120 ~~nl~LaA~~~Glgs~~~~~ 139 (189)
T 2i7h_A 120 MQNFQLLAWERGLGCVWKSG 139 (189)
T ss_dssp HHHHHHHHHHTTEEEEEECS
T ss_pred HHHHHHHHHHCCCeeEEecC
Confidence 46899999999999999864
No 114
>1tiz_A Calmodulin-related protein, putative; helix-turn-helix, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: a.39.1.5
Probab=24.29 E-value=78 Score=15.94 Aligned_cols=39 Identities=23% Similarity=0.206 Sum_probs=29.7
Q ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEE
Q 034596 22 RHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVI 60 (90)
Q Consensus 22 ~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~ 60 (90)
.=+.+-+..+|...-...+.+++..++..+..+|.+.|.
T Consensus 17 ~i~~~el~~~l~~~~~~~~~~~~~~~~~~~D~~~dg~i~ 55 (67)
T 1tiz_A 17 KLSLDEFREVALAFSPYFTQEDIVKFFEEIDVDGNGELN 55 (67)
T ss_dssp CEEHHHHHHHHHHTCTTSCHHHHHHHHHHHCCSSSSEEC
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCCCCcCc
Confidence 345666677777765568899999999999888877654
No 115
>3eo8_A BLUB-like flavoprotein; YP_001089088.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: FMN; 1.74A {Clostridium difficile 630}
Probab=24.27 E-value=85 Score=20.48 Aligned_cols=31 Identities=13% Similarity=0.069 Sum_probs=22.5
Q ss_pred HHHHHHHHhhCCcEEEEeee--HHHHHHHHHHHh
Q 034596 44 ARKLFHESREHGMAIVIVTV--KEHAEFYAQMMV 75 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~--~e~AE~~~~~l~ 75 (90)
+.++++.+|..|-+.|+.+. ++ .+...+.|.
T Consensus 146 ~~nl~LaA~~~Glgs~~~~~~~~~-~~~v~~~L~ 178 (219)
T 3eo8_A 146 IENFTLSAIELGYGSCWLTSQNYA-ADEIEAVLE 178 (219)
T ss_dssp HHHHHHHHHHTTCEEEEECTTGGG-HHHHHHHHH
T ss_pred HHHHHHHHHHCCCeeeeecCcccC-hHHHHHHhC
Confidence 68899999999999999864 43 333444443
No 116
>3tc8_A Leucine aminopeptidase; phosphorylase/hydrolase-like, structural genomics, joint CEN structural genomics, JCSG; 1.06A {Parabacteroides distasonis}
Probab=24.24 E-value=67 Score=23.17 Aligned_cols=54 Identities=17% Similarity=0.225 Sum_probs=37.4
Q ss_pred HHHhCCCCCHHHHHHHHHHHhhCCcEEEE-eeeHHHHHHHHHHHhhcCCeeEEEe
Q 034596 32 LPQVVPSVTPDDARKLFHESREHGMAIVI-VTVKEHAEFYAQMMVRGGLRSTIEP 85 (90)
Q Consensus 32 L~~v~p~~s~~~A~~i~~~vH~~G~a~v~-~~~~e~AE~~~~~l~~~gL~~~iep 85 (90)
+....|..+.++|.+...+.-.-|--..+ .+..+.|+...++|++.|+.+.+.+
T Consensus 15 ~~~~~~~~~~~~~~~~l~~l~~~~~R~~~s~~~~~~~~~l~~~l~~~G~~v~~~~ 69 (309)
T 3tc8_A 15 IASAVPDFNADSAYAYVANQVAFGPRVPNTAAHKACGDYLASELKRFGAKVYQQE 69 (309)
T ss_dssp --CCSCCCCHHHHHHHHHHHHHTCCCCTTSHHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhhcccccCHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 45567888999999887775443322222 3446778888999999999887764
No 117
>4fe3_A Cytosolic 5'-nucleotidase 3; substrate complex, HAD-like, protein binding; HET: U5P; 1.74A {Mus musculus} PDB: 2g09_A* 2bdu_A* 2g08_A 2g06_A* 2g0a_A* 2q4t_A* 2g07_A* 2jga_A 2vkq_A 2cn1_A
Probab=23.91 E-value=54 Score=22.69 Aligned_cols=22 Identities=23% Similarity=0.590 Sum_probs=18.0
Q ss_pred eEEEEEcCCCCCHHHHHHHHHHhC
Q 034596 13 YRVLLIDDTRHSEKLVAKVLPQVV 36 (90)
Q Consensus 13 y~ViL~NDd~~t~e~Vi~~L~~v~ 36 (90)
|=+||.|| ++|+.|-.+|.+++
T Consensus 276 ~Divl~~d--~~~~v~~~il~~i~ 297 (297)
T 4fe3_A 276 YDIVLVKE--ESLEVVNSILQKTL 297 (297)
T ss_dssp SSEEEETC--CBCHHHHHHHHHHC
T ss_pred CCEEEECC--CChHHHHHHHHhhC
Confidence 55889988 78999999888764
No 118
>3kwk_A Putative NADH dehydrogenase/NAD(P)H nitroreductas; structur genomics, joint center for structural genomics, JCSG; HET: MSE FMN; 1.54A {Bacteroides thetaiotaomicron vpi-5482}
Probab=23.70 E-value=58 Score=20.94 Aligned_cols=23 Identities=13% Similarity=0.213 Sum_probs=20.2
Q ss_pred HHHHHHHHhhCCcEEEEeeeHHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKEH 66 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e~ 66 (90)
+.++++.+|..|-+.|+.+.+..
T Consensus 105 ~~nl~LaA~~~Glgs~~~~~~~~ 127 (175)
T 3kwk_A 105 AQNILLAAESMGLGAVWTAAYPY 127 (175)
T ss_dssp HHHHHHHHHHTTCEECCEECTTC
T ss_pred HHHHHHHHHHcCCCeEEEccccc
Confidence 78899999999999999887654
No 119
>1jet_A OPPA, oligo-peptide binding protein; complex (peptide transport/peptide), peptide transport; 1.20A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 1b05_A* 1b0h_A* 1b2h_A 1b1h_A 1b3f_A 1b3g_A 1b3h_A* 1b3l_A 1b40_A 1b46_A 1b4h_A 1b4z_A 1b51_A 1b52_A 1b58_A 1b5h_A 1b5i_A 1b5j_A 1b6h_A 1b7h_A ...
Probab=23.24 E-value=1.3e+02 Score=22.55 Aligned_cols=48 Identities=19% Similarity=0.189 Sum_probs=34.9
Q ss_pred CCHH-HHHHHHHHHhh-CCcE--EEEee-----eHHHHHHHHHHHhh-cCCeeEEEeC
Q 034596 39 VTPD-DARKLFHESRE-HGMA--IVIVT-----VKEHAEFYAQMMVR-GGLRSTIEPD 86 (90)
Q Consensus 39 ~s~~-~A~~i~~~vH~-~G~a--~v~~~-----~~e~AE~~~~~l~~-~gL~~~iep~ 86 (90)
.+.+ +|.++..++=. .|+. +-..+ ..+.|+.++++|++ .|+.+.|++.
T Consensus 338 ~d~~~kAk~LL~eAG~~~G~~~~l~l~~~~~~~~~~~a~~iq~~l~~~iGI~v~i~~~ 395 (517)
T 1jet_A 338 QKRNEEAKKLLAEAGFTADKPLTFDLLYNTSDLHKKLAIAVASIWKKNLGVNVNLENQ 395 (517)
T ss_dssp HHHHHHHHHHHHHTTCCSSSCCEEEEEEESCHHHHHHHHHHHHHHHHHHCCEEEEEEE
T ss_pred cCcHHHHHHHHHhCCCCCCCCeEEEEEecCCchHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 5677 99999988854 4542 22211 25789999999997 8999999863
No 120
>3pxv_A Nitroreductase; flavoprotein, FMN-dependent, joint center for structural genomics, protein structure initiative, PSI-biology; HET: MSE FMN; 2.30A {Desulfitobacterium hafniense}
Probab=22.87 E-value=60 Score=20.87 Aligned_cols=20 Identities=10% Similarity=0.202 Sum_probs=18.3
Q ss_pred HHHHHHHHhhCCcEEEEeee
Q 034596 44 ARKLFHESREHGMAIVIVTV 63 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~ 63 (90)
+.++++.+|..|-+.|+.+.
T Consensus 117 ~~nl~LaA~~~Glgs~~~~~ 136 (189)
T 3pxv_A 117 CQTIALAATSLGIANIMCGY 136 (189)
T ss_dssp HHHHHHHHHHTTCEEEECGG
T ss_pred HHHHHHHHHHCCCceehhcc
Confidence 68899999999999999875
No 121
>2fre_A NAD(P)H-flavin oxidoreductase; FMN, structural genomics, PSI, protein struc initiative, midwest center for structural genomics; HET: FMN; 1.90A {Agrobacterium tumefaciens str} SCOP: d.90.1.1
Probab=22.66 E-value=73 Score=20.82 Aligned_cols=23 Identities=9% Similarity=-0.250 Sum_probs=19.7
Q ss_pred HHHHHHHHhhCCcEEEEeeeHHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKEH 66 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e~ 66 (90)
+..+++.++..|-+.|+.+.++.
T Consensus 118 ~~nl~LaA~~~Glgs~~~~~~~~ 140 (200)
T 2fre_A 118 WFSLAMQAHLLGYHAHGMGGIFK 140 (200)
T ss_dssp HHHHHHHHHHTTCEEEEECCBCH
T ss_pred HHHHHHHHHHCCcceeeEcccCH
Confidence 68899999999999999877643
No 122
>2r01_A Nitroreductase family protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 1.15A {Chlorobium tepidum tls}
Probab=22.62 E-value=72 Score=21.18 Aligned_cols=23 Identities=17% Similarity=0.245 Sum_probs=19.9
Q ss_pred HHHHHHHHHhhCCcEEEEeeeHH
Q 034596 43 DARKLFHESREHGMAIVIVTVKE 65 (90)
Q Consensus 43 ~A~~i~~~vH~~G~a~v~~~~~e 65 (90)
-+.++++.++..|-+.|+.+.++
T Consensus 117 a~~nl~LaA~~lGlgs~~~~~~~ 139 (210)
T 2r01_A 117 AAQTIMLGAAEKELGGCIVAAID 139 (210)
T ss_dssp HHHHHHHHHHHTTCEEEEECCBC
T ss_pred HHHHHHHHHHHCCCCEeeEcccC
Confidence 36889999999999999987764
No 123
>3hj9_A Oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE FMN; 2.00A {Ralstonia eutropha}
Probab=22.61 E-value=71 Score=21.47 Aligned_cols=23 Identities=13% Similarity=0.163 Sum_probs=20.5
Q ss_pred HHHHHHHHhhCCcEEEEeeeHHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKEH 66 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e~ 66 (90)
+.++++.++..|-+.|+.+.++.
T Consensus 168 ~qnl~LaA~alGLgsc~ig~~~~ 190 (223)
T 3hj9_A 168 AENAYLYCASAGLGAVVRGWLNR 190 (223)
T ss_dssp HHHHHHHHHHTTCEEEEECCCCH
T ss_pred HHHHHHHHHHCCCCEEEEeeeCH
Confidence 68899999999999999987764
No 124
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=22.54 E-value=1.2e+02 Score=22.37 Aligned_cols=46 Identities=9% Similarity=0.013 Sum_probs=32.2
Q ss_pred HHHHHHHHHHhhCCcE---EEE-eeeHHHHHHHHHHHhhcCCeeEEEeCC
Q 034596 42 DDARKLFHESREHGMA---IVI-VTVKEHAEFYAQMMVRGGLRSTIEPDS 87 (90)
Q Consensus 42 ~~A~~i~~~vH~~G~a---~v~-~~~~e~AE~~~~~l~~~gL~~~iep~~ 87 (90)
.-+..+...+|.+|+- +|. +.|+-.-...+..|.+.|+.+++.+|+
T Consensus 132 ~tv~~~l~~A~~~gk~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli~Ds 181 (315)
T 3ecs_A 132 RVVLRVLEAAVAAKKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDA 181 (315)
T ss_dssp HHHHHHHHHHHTTTCCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGG
T ss_pred HHHHHHHHHHHHcCCeEEEEEecCCCcchHHHHHHHHHHcCCCEEEEehh
Confidence 3677777889988853 332 333333334489999999999999885
No 125
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=22.51 E-value=58 Score=19.54 Aligned_cols=44 Identities=14% Similarity=0.129 Sum_probs=29.5
Q ss_pred CCCCCCCceEEEEEcCCCCCHHHHHHHHHHh----CCCCCHHHHHHHH
Q 034596 5 RGTGSGDSYRVLLIDDTRHSEKLVAKVLPQV----VPSVTPDDARKLF 48 (90)
Q Consensus 5 ~~~~~~~~y~ViL~NDd~~t~e~Vi~~L~~v----~p~~s~~~A~~i~ 48 (90)
+......+.+|++.+||....+.+...|.+. .---+.++|.+..
T Consensus 7 ~~~~~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l 54 (153)
T 3hv2_A 7 NVATVTRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLL 54 (153)
T ss_dssp CCCCCCSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHH
T ss_pred chhhccCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHH
Confidence 3344456789999999988888888887663 0012566666654
No 126
>2wzv_A NFNB protein; nitroreductase, oxidoreductase; HET: MSE FMN; 1.75A {Mycobacterium smegmatis} PDB: 2wzw_A*
Probab=22.42 E-value=1e+02 Score=20.21 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=18.1
Q ss_pred HHHHHHHHhhCCcEEEEeeeH
Q 034596 44 ARKLFHESREHGMAIVIVTVK 64 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~ 64 (90)
+.++++.++..|-+.|+.+..
T Consensus 164 ~~nl~LaA~~~Glgsc~~~~~ 184 (235)
T 2wzv_A 164 AQTLMLAMTAHGIASCPQALL 184 (235)
T ss_dssp HHHHHHHHHHTTCEEEEEGGG
T ss_pred HHHHHHHHHHCCCccchhhhh
Confidence 578899999999999998753
No 127
>1icr_A Oxygen-insensitive NAD(P)H nitroreductase; alpha-beta, oxidoreductase; HET: FMN; 1.70A {Escherichia coli} SCOP: d.90.1.1 PDB: 1ds7_A* 1icu_A* 1icv_A* 1idt_A* 1oo5_A* 1oo6_A* 1oon_A* 1ooq_A* 1yki_A* 1ylr_A* 1ylu_A* 3hzn_A* 1kqb_A* 1kqc_A* 1kqd_A* 1nec_A*
Probab=22.38 E-value=43 Score=21.78 Aligned_cols=22 Identities=9% Similarity=0.092 Sum_probs=19.4
Q ss_pred HHHHHHHHhhCCcEEEEeeeHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKE 65 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e 65 (90)
+.++++.++..|-+.|+.+.++
T Consensus 147 ~~~l~LaA~~~Glgsc~~~~~~ 168 (217)
T 1icr_A 147 VGNFLLGVAALGLDAVPIEGFD 168 (217)
T ss_dssp HHHHHHHHHHTTCEECCBCCSC
T ss_pred HHHHHHHHHHcCCCcccccCcC
Confidence 6899999999999999987664
No 128
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=22.37 E-value=1.1e+02 Score=20.95 Aligned_cols=32 Identities=16% Similarity=0.206 Sum_probs=26.2
Q ss_pred hhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 52 REHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 52 H~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
...++++|..-..+.|+..++.|+..|..+..
T Consensus 236 ~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~ 267 (367)
T 1hv8_A 236 NKEFYGLVFCKTKRDTKELASMLRDIGFKAGA 267 (367)
T ss_dssp STTCCEEEECSSHHHHHHHHHHHHHTTCCEEE
T ss_pred cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEE
Confidence 45678888998999999999999888876654
No 129
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=22.36 E-value=1.2e+02 Score=17.34 Aligned_cols=49 Identities=6% Similarity=-0.065 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHH
Q 034596 23 HSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQM 73 (90)
Q Consensus 23 ~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~ 73 (90)
=+.+-+..+|.+ + |++.++..+++..+..+|.+.+..-.+-.+-.....
T Consensus 27 I~~~el~~~l~~-~-g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~ 75 (95)
T 1c07_A 27 VSGLEVREIFLK-T-GLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLISQ 75 (95)
T ss_dssp ECHHHHHHHHHT-T-TCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHHH
T ss_pred EeHHHHHHHHHH-c-CCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHH
Confidence 355666677766 5 899999999999999999888876666555544444
No 130
>3ixl_A Amdase, arylmalonate decarboxylase; enantioselective decarboxylation, lyase; HET: CME PAC; 1.45A {Bordetella bronchiseptica} PDB: 3ixm_A 2vlb_A 3dg9_A 3ip8_A* 3dtv_A* 3eis_A*
Probab=22.30 E-value=2e+02 Score=19.83 Aligned_cols=69 Identities=19% Similarity=0.100 Sum_probs=42.6
Q ss_pred eEEEEEcCCCCCH-------HHHHHHHHHhC--CCCCHHHHHHHHHHHhhCC---cEEEEeeeHHHHHHHHHHHhhcCCe
Q 034596 13 YRVLLIDDTRHSE-------KLVAKVLPQVV--PSVTPDDARKLFHESREHG---MAIVIVTVKEHAEFYAQMMVRGGLR 80 (90)
Q Consensus 13 y~ViL~NDd~~t~-------e~Vi~~L~~v~--p~~s~~~A~~i~~~vH~~G---~a~v~~~~~e~AE~~~~~l~~~gL~ 80 (90)
-.+|++.-.--+| .-+.+.|.+.+ |=.+...|..-+ ++..| -++++.|..+..+.|++.|...|+.
T Consensus 67 ~d~i~~aCtsas~~~G~~~~~~~~~~l~~~~~iPv~~~~~A~~~a--l~~~g~~rvglltpy~~~~~~~~~~~l~~~Gie 144 (240)
T 3ixl_A 67 AAVVSLMCTSLSFYRGAAFNAALTVAMREATGLPCTTMSTAVLNG--LRALGVRRVALATAYIDDVNERLAAFLAEESLV 144 (240)
T ss_dssp EEEEEECCHHHHHTTCHHHHHHHHHHHHHHHSSCEEEHHHHHHHH--HHHTTCSEEEEEESSCHHHHHHHHHHHHHTTCE
T ss_pred CCEEEECCcHHHHhcccchHHHHHHHHHhccCCCEECHHHHHHHH--HHHhCCCEEEEEeCChHHHHHHHHHHHHHCCCE
Confidence 4566665433233 13567776643 333444444333 33344 4777788889999999999999998
Q ss_pred eEE
Q 034596 81 STI 83 (90)
Q Consensus 81 ~~i 83 (90)
+..
T Consensus 145 v~~ 147 (240)
T 3ixl_A 145 PTG 147 (240)
T ss_dssp EEE
T ss_pred Eec
Confidence 654
No 131
>2xzm_M RPS18E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_M
Probab=22.28 E-value=23 Score=23.96 Aligned_cols=65 Identities=6% Similarity=0.045 Sum_probs=57.1
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhh
Q 034596 11 DSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVR 76 (90)
Q Consensus 11 ~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~ 76 (90)
-.|-|.+.|=|+..-.-|...|..++ |.....|..|...+--....-++..+-++.+...+.+..
T Consensus 11 f~~m~RI~g~~l~~~k~v~~aLt~I~-GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~ 75 (155)
T 2xzm_M 11 FKYIHRILNTNIDGKRITPIALTGIR-GIGRRFAYIICKVLKIDPNARAGLLTEDQCNKITDLIAD 75 (155)
T ss_dssp SCSCCEETTTEECCSSCHHHHHTTST-TCCHHHHHHHHHHTTCCSSSCSSCSCHHHHHHHHHHHHS
T ss_pred hhhhHheeCccCCCCCEEEEeeeccc-ccCHHHHHHHHHHcCCCcccccccCCHHHHHHHHHHHhC
Confidence 45778888888888888999999999 999999999999999988888998888888888877764
No 132
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=22.19 E-value=1e+02 Score=23.03 Aligned_cols=32 Identities=16% Similarity=0.103 Sum_probs=27.8
Q ss_pred hCCcEEEEeeeHHHHHHHHHHHhhcCCeeEEE
Q 034596 53 EHGMAIVIVTVKEHAEFYAQMMVRGGLRSTIE 84 (90)
Q Consensus 53 ~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~ie 84 (90)
..|+++|+.-+++.|+..++.|+..|+.+..-
T Consensus 189 ~~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~l 220 (459)
T 2z83_A 189 YAGKTVWFVASVKMGNEIAMCLQRAGKKVIQL 220 (459)
T ss_dssp CCSCEEEECSCHHHHHHHHHHHHHTTCCEEEE
T ss_pred cCCCEEEEeCChHHHHHHHHHHHhcCCcEEec
Confidence 47899999999999999999999988776543
No 133
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=22.09 E-value=1.1e+02 Score=18.11 Aligned_cols=26 Identities=8% Similarity=0.225 Sum_probs=21.7
Q ss_pred HHHHHhCCCCCHHHHHHHHHHHhhCCc
Q 034596 30 KVLPQVVPSVTPDDARKLFHESREHGM 56 (90)
Q Consensus 30 ~~L~~v~p~~s~~~A~~i~~~vH~~G~ 56 (90)
..|++-| .+...+|..||.+.-..|-
T Consensus 28 S~lQR~l-rIGYnRAArlid~lE~~Gi 53 (73)
T 2ve8_A 28 SAVQRKL-KIGYNRAARMIEAMEMAGV 53 (73)
T ss_dssp HHHHHHH-TCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHH-ccChHHHHHHHHHHHHCCc
Confidence 4688889 8999999999988888774
No 134
>3u61_A DNA polymerase accessory protein 62; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_A* 3u60_A*
Probab=21.87 E-value=67 Score=22.73 Aligned_cols=31 Identities=26% Similarity=0.322 Sum_probs=26.9
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCC
Q 034596 24 SEKLVAKVLPQVVPSVTPDDARKLFHESREHG 55 (90)
Q Consensus 24 t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G 55 (90)
.-.+|+++|++.+ +.|.++|.+-....-.+|
T Consensus 118 ~d~~~l~lv~k~Y-~vs~~kA~eYl~iLt~~q 148 (199)
T 3u61_A 118 TEVLIIKLLAKRY-QVNTNDAINYKSILTKNG 148 (199)
T ss_dssp HHHHHHHHHHHHH-TCCTTHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHhCccc
Confidence 3459999999999 999999999887777777
No 135
>3gbh_A NAD(P)H-flavin oxidoreductase; putative NAD(P)H:FMN oxidoreductase, structural genomics, JO center for structural genomics; HET: MSE FMN PGE; 2.00A {Staphylococcus epidermidis atcc 12228} SCOP: d.90.1.0
Probab=21.78 E-value=54 Score=21.55 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.0
Q ss_pred HHHHHHHHhhCCcEEEEeeeHHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKEH 66 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e~ 66 (90)
+.++|+.++..|-+.|+.+.++.
T Consensus 147 ~~~l~LaA~~~Glgsc~i~~~~~ 169 (213)
T 3gbh_A 147 AMQLMLTAKAHGYDTNPIGGFDK 169 (213)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCT
T ss_pred HHHHHHHHHHcCCCeeeecCcCH
Confidence 66789999999999999887753
No 136
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=21.70 E-value=47 Score=19.47 Aligned_cols=40 Identities=18% Similarity=0.193 Sum_probs=27.4
Q ss_pred CCCCCceEEEEEcCCCCCHHHHHHHHHHhCCCC------CHHHHHHHH
Q 034596 7 TGSGDSYRVLLIDDTRHSEKLVAKVLPQVVPSV------TPDDARKLF 48 (90)
Q Consensus 7 ~~~~~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~------s~~~A~~i~ 48 (90)
....+..+|++.+|+-...+.+...|... |. +.++|.+..
T Consensus 10 ~~~~~~~~ilivdd~~~~~~~l~~~L~~~--g~~v~~~~~~~~al~~l 55 (138)
T 2b4a_A 10 HHHMQPFRVTLVEDEPSHATLIQYHLNQL--GAEVTVHPSGSAFFQHR 55 (138)
T ss_dssp ----CCCEEEEECSCHHHHHHHHHHHHHT--TCEEEEESSHHHHHHTG
T ss_pred cCCCCCCeEEEECCCHHHHHHHHHHHHHc--CCEEEEeCCHHHHHHHH
Confidence 34557789999999999999999988873 32 455565543
No 137
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=21.63 E-value=1e+02 Score=16.82 Aligned_cols=38 Identities=16% Similarity=0.192 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEE
Q 034596 23 HSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVI 60 (90)
Q Consensus 23 ~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~ 60 (90)
=+.+-+..+|..+-...+.+++..++..+..+|.+.|.
T Consensus 26 i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~ 63 (92)
T 2kn2_A 26 ISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVN 63 (92)
T ss_dssp ECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEE
T ss_pred EcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEe
Confidence 35566677777765468999999999999988877654
No 138
>4eo3_A Bacterioferritin comigratory protein/NADH dehydro; thioredoxin-fold, alpha-beta-aplha sandwich fold, antioxidan oxidoreductase, FMN binding; HET: FMN; 1.65A {Thermotoga maritima}
Probab=21.62 E-value=73 Score=23.05 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=20.7
Q ss_pred HHHHHHHHhhCCcEEEEeeeHHHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKEHA 67 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e~A 67 (90)
+..+|+.+|..|-+.|+.+.++..
T Consensus 245 ~~nl~LaA~~~GLgs~~~~~~~~~ 268 (322)
T 4eo3_A 245 VGNLLVQATQMGLVAHPVAGYDPV 268 (322)
T ss_dssp HHHHHHHHHHTTCEEEEECCSCHH
T ss_pred HHHHHHHHHHcCcCEEEcCccCHH
Confidence 578999999999999998887643
No 139
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=21.50 E-value=1.4e+02 Score=17.87 Aligned_cols=51 Identities=16% Similarity=-0.003 Sum_probs=37.9
Q ss_pred cCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHH
Q 034596 19 DDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYA 71 (90)
Q Consensus 19 NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~ 71 (90)
+|-.=+.+-+..+|.+ . |++.++..+|+..+..+|.+.+-.-.+-.|-...
T Consensus 27 ~dG~Is~~el~~~l~~-~-gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~ 77 (106)
T 1eh2_A 27 VNGFLSGDKVKPVLLN-S-KLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLV 77 (106)
T ss_dssp SSSCCBHHHHHHHHHT-T-TCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHH
T ss_pred CCCeEcHHHHHHHHHH-c-CCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 4555677778888887 6 8999999999999999998876554444444333
No 140
>3ju3_A Probable 2-oxoacid ferredoxin oxidoreductase, ALP; structural genomics, PSI-2, protein structu initiative; 1.90A {Thermoplasma acidophilum}
Probab=21.44 E-value=1.3e+02 Score=18.43 Aligned_cols=27 Identities=11% Similarity=0.052 Sum_probs=15.6
Q ss_pred EEEEeee-HHHHHHHHHHHhhcCCeeEE
Q 034596 57 AIVIVTV-KEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 57 a~v~~~~-~e~AE~~~~~l~~~gL~~~i 83 (90)
++|+.|+ ...|...+++|+..|+.+.+
T Consensus 17 ~iv~~Gs~~~~a~eA~~~L~~~Gi~v~v 44 (118)
T 3ju3_A 17 TFVTWGSQKGPILDVIEDLKEEGISANL 44 (118)
T ss_dssp EEEEEGGGHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEEECccHHHHHHHHHHHHHCCCceEE
Confidence 3444443 55666666666666666554
No 141
>3n2s_A NADPH-dependent nitro/flavin reductase; alpga-beta-alpha sandwich, oxidoreductase; HET: FMN; 1.95A {Bacillus subtilis} SCOP: d.90.1.0
Probab=21.35 E-value=1.2e+02 Score=20.83 Aligned_cols=31 Identities=10% Similarity=0.188 Sum_probs=23.1
Q ss_pred HHHHHHHHhhCCcEEEEeeeHH-HHHHHHHHH
Q 034596 44 ARKLFHESREHGMAIVIVTVKE-HAEFYAQMM 74 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~~e-~AE~~~~~l 74 (90)
|..+++.++..|-+.|+.+..- ..+...+.|
T Consensus 118 ~qnl~LaA~slGLgsc~ig~~~~~~~~v~~~L 149 (249)
T 3n2s_A 118 AQNMSIAAESMGLGICYIGGIRNELDKVTEVL 149 (249)
T ss_dssp HHHHHHHHHHTTCEEEEEGGGGGGHHHHHHHH
T ss_pred HHHHHHHHHHCCCCEeeeccccccHHHHHHHh
Confidence 7789999999999999988752 334444444
No 142
>2ii1_A Acetamidase; 10172637, structural genomics, joint center for structural genomics, PSI-2, protein structure initiative, J hydrolase; 1.95A {Bacillus halodurans}
Probab=21.32 E-value=88 Score=23.10 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=28.4
Q ss_pred CceEEEEEcCCCC-----CHHHHHHHHHHhCCCCCHHHHHHHHHHH
Q 034596 11 DSYRVLLIDDTRH-----SEKLVAKVLPQVVPSVTPDDARKLFHES 51 (90)
Q Consensus 11 ~~y~ViL~NDd~~-----t~e~Vi~~L~~v~p~~s~~~A~~i~~~v 51 (90)
..|-++=.+.|.+ ...-.++.|++-+ |+|.++|+.++-.+
T Consensus 224 ~~~~~~G~~~dl~~A~r~A~~~mi~~L~~~~-gls~~eAy~llS~a 268 (301)
T 2ii1_A 224 THFMTIASAETLDAAAVQATKNMATFLANRT-ALSIEEAGMLLSGA 268 (301)
T ss_dssp SEEEEEEEESSHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHH
T ss_pred CcEEEEEECCCHHHHHHHHHHHHHHHHHHhc-CcCHHHHHHHhHhh
Confidence 3444444444432 2456788899999 99999999999876
No 143
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=21.17 E-value=1.1e+02 Score=17.80 Aligned_cols=50 Identities=12% Similarity=-0.051 Sum_probs=35.5
Q ss_pred CCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHH
Q 034596 20 DTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYA 71 (90)
Q Consensus 20 Dd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~ 71 (90)
|-.=+.+-+..+|.+ . |++.+++.+++..+..+|.+.+..-.+-.+-...
T Consensus 25 dG~Is~~el~~~l~~-~-~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 25 TGRVLALDAAAFLKK-S-GLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV 74 (99)
T ss_dssp SSCCCSHHHHHHHHT-S-SSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHH-c-CCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 344455666777776 6 8999999999999999998776554444444333
No 144
>1s6j_A CDPK, calcium-dependent protein kinase SK5; EF-hand, helix-loop-helix, calcium-binding, calmodulin superfamily, transferase, plant protein; NMR {Glycine max} SCOP: a.39.1.5
Probab=20.96 E-value=1.1e+02 Score=16.43 Aligned_cols=38 Identities=8% Similarity=0.076 Sum_probs=29.0
Q ss_pred CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEE
Q 034596 22 RHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIV 59 (90)
Q Consensus 22 ~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v 59 (90)
.=+.+-+..+|..+-...+.+++..++..+..+|.+.|
T Consensus 39 ~i~~~el~~~l~~~~~~~~~~~~~~l~~~~d~~~~g~i 76 (87)
T 1s6j_A 39 TITFDELKDGLKRVGSELMESEIKDLMDAADIDKSGTI 76 (87)
T ss_dssp CEEHHHHHHHHHTTTSSCCHHHHHHHHHHHCTTCSSEE
T ss_pred cCcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcC
Confidence 33566677778777656889999999999988877655
No 145
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=26.43 E-value=20 Score=22.87 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=23.4
Q ss_pred hhCCcEEEEeeeHHHHHHHHHHHhhcCCee
Q 034596 52 REHGMAIVIVTVKEHAEFYAQMMVRGGLRS 81 (90)
Q Consensus 52 H~~G~a~v~~~~~e~AE~~~~~l~~~gL~~ 81 (90)
+..++++|+...++.|+..+..|+..|+.+
T Consensus 28 ~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~ 57 (170)
T 2yjt_D 28 PEATRSIVFVRKRERVHELANWLREAGINN 57 (170)
Confidence 345788889888999999988888766544
No 146
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=20.88 E-value=1.1e+02 Score=22.58 Aligned_cols=32 Identities=9% Similarity=0.078 Sum_probs=27.2
Q ss_pred hCCcEEEEeeeHHHHHHHHHHHhhcCCeeEEE
Q 034596 53 EHGMAIVIVTVKEHAEFYAQMMVRGGLRSTIE 84 (90)
Q Consensus 53 ~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~ie 84 (90)
..|+++|..-.++.|+..++.|+..|+.+..-
T Consensus 170 ~~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~l 201 (431)
T 2v6i_A 170 FDGRTVWFVHSIKQGAEIGTCLQKAGKKVLYL 201 (431)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCeEEEe
Confidence 47899999999999999999999888776554
No 147
>1spv_A Putative polyprotein/phosphatase; structural genomoics, alpha/beta monomeric protein, structural genomics, PSI, protein structure initiative; HET: MES; 2.00A {Escherichia coli} SCOP: c.50.1.2
Probab=20.81 E-value=1.9e+02 Score=19.17 Aligned_cols=40 Identities=10% Similarity=0.192 Sum_probs=27.4
Q ss_pred CCCCCHHHHHHHHHHHhhC--------CcEEEEeeeHHHHHHHHHHHhh
Q 034596 36 VPSVTPDDARKLFHESREH--------GMAIVIVTVKEHAEFYAQMMVR 76 (90)
Q Consensus 36 ~p~~s~~~A~~i~~~vH~~--------G~a~v~~~~~e~AE~~~~~l~~ 76 (90)
+ |.+.++|.++|.++=.+ -+-++-.++.+..+.|.+.|..
T Consensus 126 ~-g~p~~~aa~i~~~~v~~~l~~~~~~~~V~~v~~~~~~~~~~~~~l~~ 173 (184)
T 1spv_A 126 Y-GYPRAAAAEIAVKTVSEFITRHALPEQVYFVCYDEENAHLYERLLTQ 173 (184)
T ss_dssp T-CCCHHHHHHHHHHHHHHHHHHCCSSSEEEEEESSHHHHHHHHHHHHC
T ss_pred C-CCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 5 78899999888765442 2333446677778888887764
No 148
>3r8n_M 30S ribosomal protein S13; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_M* 3j18_M 3oaq_M 3ofa_M 3ofx_M 3ofo_M 3r8o_M 4a2i_M 4gd1_M 4gd2_M 3i1m_M 1vs7_M* 3e1a_F 3e1c_F 1vs5_M 3i1o_M 3i1q_M 3i1s_M 3i1z_M 3i21_M ...
Probab=20.77 E-value=28 Score=22.36 Aligned_cols=58 Identities=5% Similarity=-0.021 Sum_probs=47.9
Q ss_pred cCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhhc
Q 034596 19 DDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRG 77 (90)
Q Consensus 19 NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~~ 77 (90)
|=|+..-.-|...|..++ |.....|.+|...+.-.-..-++..+-++-+...+.+..+
T Consensus 5 g~~i~~~k~v~~aLt~I~-GIG~~~A~~I~~~~gid~~~r~~~Lt~~ei~~l~~~i~~~ 62 (114)
T 3r8n_M 5 GINIPDHKHAVIALTSIY-GVGKTRSKAILAAAGIAEDVKISELSEGQIDTLRDEVAKF 62 (114)
T ss_dssp SSCCCCSSCHHHHGGGST-TCCHHHHHHHHHHTTCCTTCCSTTCCHHHHHHHHHHHSSS
T ss_pred CccCCCCCEeHhhHhhhc-CcCHHHHHHHHHHcCcCcccCcccCCHHHHHHHHHHHHHh
Confidence 344555566888999999 9999999999999999989999988888888888877543
No 149
>2vs7_A I-DMOI, homing endonuclease I-DMOI; protein/nucleic acid crystallography; 2.05A {Desulfurococcus mobilis} PDB: 2vs8_A 1b24_A
Probab=20.66 E-value=1.4e+02 Score=19.97 Aligned_cols=30 Identities=20% Similarity=0.135 Sum_probs=26.2
Q ss_pred cEEEEeeeHHHHHHHHHHHhhcCCeeEEEe
Q 034596 56 MAIVIVTVKEHAEFYAQMMVRGGLRSTIEP 85 (90)
Q Consensus 56 ~a~v~~~~~e~AE~~~~~l~~~gL~~~iep 85 (90)
+..+...+++.++..+..|.+.|+.++|..
T Consensus 124 ~i~l~s~s~~ll~~v~~lL~~lGI~s~i~~ 153 (199)
T 2vs7_A 124 RLRIWNKNKALLEIVSRWLNNLGVRNTIHL 153 (199)
T ss_dssp SEEEEESCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECcHHHHHHHHHHHHHCCCeEEEEE
Confidence 556678889999999999999999999854
No 150
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=20.60 E-value=1.1e+02 Score=18.52 Aligned_cols=36 Identities=17% Similarity=0.229 Sum_probs=22.1
Q ss_pred CHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEE
Q 034596 24 SEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIV 59 (90)
Q Consensus 24 t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v 59 (90)
+.+-...+|...-+.+|.++..+++.++..+|.+.|
T Consensus 101 ~~~El~~~l~~~g~~~~~~e~~~l~~~~D~d~dG~I 136 (148)
T 2lmt_A 101 SPAELRFVMINLGEKVTDEEIDEMIREADFDGDGMI 136 (148)
T ss_dssp CHHHHHHHHHHHTCCCCHHHHHHHHHHHCCSCCSSE
T ss_pred cHHHHHHHHHHcCccccHHHHHHHHHHhCCCCCCeE
Confidence 344445556665556677777777777766666544
No 151
>3d8t_A Uroporphyrinogen-III synthase; heme biosynthesis, lyase; 1.60A {Thermus thermophilus} PDB: 3d8r_A 3d8s_A 3d8n_A
Probab=20.53 E-value=67 Score=22.42 Aligned_cols=30 Identities=13% Similarity=0.245 Sum_probs=24.0
Q ss_pred hCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 53 EHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 53 ~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
-.|+-++.+.+++ ++.+++.|++.|..+..
T Consensus 31 L~G~~VlvtR~~~-~~~l~~~L~~~G~~v~~ 60 (286)
T 3d8t_A 31 PFTMRIAYAGLRR-KEEFKALAEKLGFTPLL 60 (286)
T ss_dssp --CCEEEECCSSC-HHHHHHHHHHHTCEEEE
T ss_pred CCCCEEEEeCCCc-hHHHHHHHHHCCCeEEE
Confidence 3689999888887 99999999999966543
No 152
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=20.47 E-value=95 Score=19.26 Aligned_cols=41 Identities=17% Similarity=0.283 Sum_probs=30.8
Q ss_pred CCceEEEEEcCCCCCHHHHHHHHHHh----C-CCCCHHHHHHHHHH
Q 034596 10 GDSYRVLLIDDTRHSEKLVAKVLPQV----V-PSVTPDDARKLFHE 50 (90)
Q Consensus 10 ~~~y~ViL~NDd~~t~e~Vi~~L~~v----~-p~~s~~~A~~i~~~ 50 (90)
.++.||++.+|+....+.....|.+. + .--|-++|.++..+
T Consensus 6 ~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~~~ 51 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIARK 51 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHh
Confidence 45679999999999999999999874 2 12356777776543
No 153
>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}
Probab=20.46 E-value=2.2e+02 Score=20.78 Aligned_cols=46 Identities=20% Similarity=0.290 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHhhCCcEEEEee---------------------eHHHHHHHHHHHhhcCCeeEEEe
Q 034596 40 TPDDARKLFHESREHGMAIVIVT---------------------VKEHAEFYAQMMVRGGLRSTIEP 85 (90)
Q Consensus 40 s~~~A~~i~~~vH~~G~a~v~~~---------------------~~e~AE~~~~~l~~~gL~~~iep 85 (90)
+.+.|...+..+...|--.|-.. +.+..+.+.+.+++.||.+.+.|
T Consensus 51 ~~~~~~~~l~~lk~~g~N~VrL~v~~~~~~~~~~~~~~~~~~t~~~~~v~~~~~~Ak~~GL~V~l~p 117 (343)
T 3civ_A 51 GTDEARASMRALAEQPFNWVTLAFAGLMEHPGDPAIAYGPPVTVSDDEIASMAELAHALGLKVCLKP 117 (343)
T ss_dssp GSHHHHHHHHHHHHSSCSEEEEEEEEEESSTTCCCCBCSTTTBCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred CchhHHHHHHHHHHcCCCEEEEEeeecCCCCCCCcccccCCCCCCHHHHHHHHHHHHHCCCEEEEEE
Confidence 44556666666666665444221 57788899999999999998876
No 154
>3k6h_A Nitroreductase family protein; APC5990, agrobacterium tumefaciens ST structural genomics, PSI-2, protein structure initiative; HET: FMN; 3.05A {Agrobacterium tumefaciens str}
Probab=20.35 E-value=82 Score=20.56 Aligned_cols=20 Identities=15% Similarity=0.189 Sum_probs=18.0
Q ss_pred HHHHHHHHhhCCcEEEEeee
Q 034596 44 ARKLFHESREHGMAIVIVTV 63 (90)
Q Consensus 44 A~~i~~~vH~~G~a~v~~~~ 63 (90)
+.++++.+|..|-+.|+.+.
T Consensus 127 ~~nl~LaA~~~GLgt~~~~~ 146 (197)
T 3k6h_A 127 CLNVIFAANASGFAANWLTE 146 (197)
T ss_dssp HHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHHHHHCCCceEEecC
Confidence 68899999999999999864
No 155
>3sgf_J 50S ribosomal protein L7/L12; typeii release factor binding with ribosome, ribosome-antibi complex; 3.20A {Escherichia coli} PDB: 2xtg_L 2xux_L 3uos_J 1rqu_A 1rqv_A 2gya_3 2gyc_3 1rqt_A
Probab=20.01 E-value=22 Score=23.32 Aligned_cols=68 Identities=16% Similarity=0.214 Sum_probs=0.0
Q ss_pred CceEEEEEcCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHhhCCcEEEEeeeHHHHHHHHHHHhhcCCeeEE
Q 034596 11 DSYRVLLIDDTRHSEKLVAKVLPQVVPSVTPDDARKLFHESREHGMAIVIVTVKEHAEFYAQMMVRGGLRSTI 83 (90)
Q Consensus 11 ~~y~ViL~NDd~~t~e~Vi~~L~~v~p~~s~~~A~~i~~~vH~~G~a~v~~~~~e~AE~~~~~l~~~gL~~~i 83 (90)
..|-|+|-+-+ ..-=-||...+.+. |++.-+|..+...+ -+.+--..+++.||....+|...|-.++|
T Consensus 53 teFdV~L~~~g-~~Ki~VIK~VR~it-gLgLkEAK~lVe~a---P~~iKe~vsKeeAE~ik~kLe~aGA~Vel 120 (121)
T 3sgf_J 53 TEFDVILKAAG-ANKVAVIKAVRGAT-GLGLKEAKDLVESA---PAALKEGVSKDDAEALKKALEEAGAEVEV 120 (121)
T ss_dssp -------------------------------------------------------------------------
T ss_pred ceeEEEEecCc-hhhHHHHHHHHHhc-CCCHHHHHHHHHhC---CHHHHcCCCHHHHHHHHHHHHHcCCEEee
Confidence 46888887754 34566888888887 99999999976533 34444467899999999999998876654
Done!