Query 034598
Match_columns 90
No_of_seqs 108 out of 623
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 06:57:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034598.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034598hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2al3_A TUG long isoform; TUG U 68.0 8 0.00027 24.9 4.2 35 39-75 18-52 (90)
2 1und_A Advillin, P92; actin bi 58.2 2.7 9.3E-05 23.0 0.5 19 48-66 1-19 (37)
3 1y74_B MLIN-2/CASK, peripheral 53.9 5.9 0.0002 22.1 1.5 20 48-67 26-49 (50)
4 2xko_C PIPX, global nitrogen r 47.7 2.4 8.4E-05 27.5 -1.0 11 48-58 5-15 (89)
5 2nz0_B Potassium voltage-gated 37.7 28 0.00097 23.3 3.1 58 27-89 33-91 (140)
6 2vpk_A Myoneurin; transcriptio 37.4 34 0.0012 20.7 3.3 48 31-89 25-77 (116)
7 3drz_A BTB/POZ domain-containi 34.6 83 0.0028 19.5 5.0 57 28-89 5-66 (107)
8 3n5b_B ASR0485 protein; PII, P 34.6 5.3 0.00018 26.9 -1.0 10 49-58 29-38 (112)
9 1yu8_X Villin; alpha helix, 3- 34.2 10 0.00035 23.1 0.4 20 48-67 31-50 (67)
10 3bux_B E3 ubiquitin-protein li 32.5 1.4E+02 0.0047 23.3 6.6 53 11-66 254-314 (329)
11 1r29_A B-cell lymphoma 6 prote 32.4 37 0.0012 20.9 2.8 51 31-89 32-86 (127)
12 1s1g_A Potassium voltage-gated 32.0 26 0.00088 23.0 2.1 58 27-89 11-69 (124)
13 1ujs_A Actin-binding LIM prote 31.2 14 0.00047 23.7 0.6 20 48-67 46-65 (88)
14 3ga1_A Nucleus accumbens-assoc 30.5 69 0.0024 19.8 3.9 48 31-89 36-87 (129)
15 1qzp_A Dematin; villin headpie 30.4 9 0.00031 23.3 -0.3 19 48-66 32-50 (68)
16 3pmi_A PWWP domain-containing 30.3 18 0.00063 24.9 1.2 29 39-67 47-78 (134)
17 2k6m_S Supervillin; SVHP, HP, 28.3 11 0.00039 22.8 -0.1 20 48-67 31-50 (67)
18 3qli_A Coenzyme A transferase; 27.3 36 0.0012 27.2 2.6 43 25-68 403-454 (455)
19 1zo0_A ODC-AZ, ornithine decar 26.8 37 0.0013 22.9 2.2 40 28-70 35-78 (126)
20 1w8x_N Protein P31, protein C, 26.2 13 0.00044 25.1 -0.2 29 26-56 85-123 (126)
21 2vkp_A BTB/POZ domain-containi 25.9 86 0.0029 18.4 3.6 54 31-89 11-68 (109)
22 1y6i_A Mg-chelatase cofactor G 25.4 5.3 0.00018 29.7 -2.4 30 24-56 200-229 (233)
23 1z3x_A Putative cytidyltransfe 25.0 2.7 9.1E-05 31.5 -4.2 29 24-55 208-236 (238)
24 3ezo_A Malonyl COA-acyl carrie 24.4 48 0.0016 24.3 2.6 40 29-69 10-49 (318)
25 1nn7_A Potassium channel KV4.2 24.3 14 0.00046 23.5 -0.3 54 31-89 2-56 (105)
26 2if5_A Zinc finger and BTB dom 22.7 1.1E+02 0.0038 18.3 3.8 52 31-89 28-82 (120)
27 1zav_U 50S ribosomal protein L 22.4 56 0.0019 16.7 1.9 13 55-67 18-30 (30)
28 1wy3_A Villin; structural prot 20.8 25 0.00086 18.8 0.4 17 50-66 1-17 (35)
No 1
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=67.98 E-value=8 Score=24.87 Aligned_cols=35 Identities=17% Similarity=0.219 Sum_probs=27.5
Q ss_pred cceEEEEEccCcCchhHHHHHHHHHHhhCCccCCCcE
Q 034598 39 QKTRFVVPISYLNHPSFIDLLNRAEEEFGFNHPMGGL 75 (90)
Q Consensus 39 ~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~~~~G~L 75 (90)
..+|+.|++ -..-.+.++|++|.+.||++.+...|
T Consensus 18 n~rr~~VKv--tp~t~L~~VL~eaC~K~gl~~~~~~L 52 (90)
T 2al3_A 18 NGRRHTVKV--TPSTVLLQVLEDTCRRQDFNPSEYDL 52 (90)
T ss_dssp TSCEEEECC--CTTSBHHHHHHHHHHHTTCCGGGCEE
T ss_pred CCcEEEEEE--CCCCCHHHHHHHHHHHhCCChhhCeE
Confidence 568999988 34457889999999999998754444
No 2
>1und_A Advillin, P92; actin binding, F-actin binding, cytoskeleton, headpiece subdomain; NMR {Homo sapiens} SCOP: a.14.1.1
Probab=58.16 E-value=2.7 Score=22.97 Aligned_cols=19 Identities=21% Similarity=0.620 Sum_probs=17.0
Q ss_pred cCcCchhHHHHHHHHHHhh
Q 034598 48 SYLNHPSFIDLLNRAEEEF 66 (90)
Q Consensus 48 ~~L~hP~F~~LL~~aeeEf 66 (90)
.||+...|++++.++.+||
T Consensus 1 ~yLsd~dF~~vFgmsr~eF 19 (37)
T 1und_A 1 XYLSEQDFVSVFGITRGQF 19 (37)
T ss_dssp -CCCHHHHHHHHSSCHHHH
T ss_pred CCCCHHHHHHHHCcCHHHH
Confidence 4899999999999999998
No 3
>1y74_B MLIN-2/CASK, peripheral plasma membrane protein CASK; L27 domain, scaffold protein, protein assembly, cell polarity, transport protein; NMR {Mus musculus} SCOP: a.194.1.1 PDB: 1zl8_B
Probab=53.95 E-value=5.9 Score=22.09 Aligned_cols=20 Identities=35% Similarity=0.635 Sum_probs=15.1
Q ss_pred cCcCchhHHHHHH----HHHHhhC
Q 034598 48 SYLNHPSFIDLLN----RAEEEFG 67 (90)
Q Consensus 48 ~~L~hP~F~~LL~----~aeeEfG 67 (90)
..|+.|.|++||+ -|.++||
T Consensus 26 ~lL~~PHfqaLl~ahD~Va~~~y~ 49 (50)
T 1y74_B 26 RILTQPHFMALLQTHDVVAHEVYS 49 (50)
T ss_dssp HHHHSHHHHHHHHHHHHHHHHHHT
T ss_pred HHHcCHHHHHHHHHHHHHHHHHhc
Confidence 5689999999997 3455554
No 4
>2xko_C PIPX, global nitrogen regulator; transcription, nitrogen assimilation, CRP/FNR superfamily, 2-oxoglutarate, global nitrogen controller; HET: AKG; 2.25A {Synechococcus elongatus} PDB: 2xg8_D*
Probab=47.71 E-value=2.4 Score=27.52 Aligned_cols=11 Identities=64% Similarity=1.032 Sum_probs=8.4
Q ss_pred cCcCchhHHHH
Q 034598 48 SYLNHPSFIDL 58 (90)
Q Consensus 48 ~~L~hP~F~~L 58 (90)
.|||||.|--|
T Consensus 5 ~YLNHPtFGlL 15 (89)
T 2xko_C 5 NYLNHPTFGLL 15 (89)
T ss_dssp CEEEETTTEEE
T ss_pred ccccCCccchh
Confidence 59999998543
No 5
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A
Probab=37.68 E-value=28 Score=23.32 Aligned_cols=58 Identities=24% Similarity=0.268 Sum_probs=41.5
Q ss_pred CcceEEEEecCCcceEEEEEccCc-CchhHHHHHHHHHHhhCCccCCCcEEeeCcHHHHHhhhc
Q 034598 27 PKGHVVVYVGELQKTRFVVPISYL-NHPSFIDLLNRAEEEFGFNHPMGGLTIPCREDAFINITF 89 (90)
Q Consensus 27 pkG~~aVyVG~~~~~RfvVp~~~L-~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~ 89 (90)
....+.+-||. +||.+..+-| ++|. .+|..++...-++.+.|.+-|-.+...|..||.
T Consensus 33 ~~~~V~LNVGG---~~F~T~~~TL~~~P~--S~L~~~~~~~~~~~~~g~yFiDRdp~~F~~ILn 91 (140)
T 2nz0_B 33 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLN 91 (140)
T ss_dssp CCCEEEEEETT---EEEEEEHHHHHTCTT--STTTSGGGGGSEETTTTEEEECSCHHHHHHHHH
T ss_pred CCCEEEEEECC---EEEEeeHHHHhcCCC--eeecccCCcccccCCCCeEEEeCCcHHHHHHHH
Confidence 45688888996 8999988766 3342 233334444455555689999999999999873
No 6
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens}
Probab=37.35 E-value=34 Score=20.73 Aligned_cols=48 Identities=15% Similarity=0.242 Sum_probs=34.7
Q ss_pred EEEEecCCcceEEEEEccCc--CchhHHHHHHHHHHhhCCccCCCcEEee---CcHHHHHhhhc
Q 034598 31 VVVYVGELQKTRFVVPISYL--NHPSFIDLLNRAEEEFGFNHPMGGLTIP---CREDAFINITF 89 (90)
Q Consensus 31 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP---C~~~~F~~vl~ 89 (90)
+.+.||+ ++|-+.-..| ..|.|++++... . + ..+.|+ .+.+.|+.++.
T Consensus 25 v~l~v~~---~~~~aHk~vLaa~S~yF~~~f~~~------~-~-~~i~l~~~~~~~~~f~~ll~ 77 (116)
T 2vpk_A 25 CTIVIGE---FQFKAHRNVLASFSEYFGAIYRST------S-E-NNVFLDQSQVKADGFQKLLE 77 (116)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTTC------C-C-SCEECCTTTCCHHHHHHHHH
T ss_pred EEEEECC---EEEeccHHHHhhcCHHHHHHHcCC------C-C-CeEEeecCCCCHHHHHHHHH
Confidence 3456675 6777777777 579999998754 2 3 578888 68888888763
No 7
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens}
Probab=34.63 E-value=83 Score=19.52 Aligned_cols=57 Identities=19% Similarity=0.210 Sum_probs=39.9
Q ss_pred cceEEEEecCCcceEEEEEccCcC-ch--hHHHHHHHHHHhhC--CccCCCcEEeeCcHHHHHhhhc
Q 034598 28 KGHVVVYVGELQKTRFVVPISYLN-HP--SFIDLLNRAEEEFG--FNHPMGGLTIPCREDAFINITF 89 (90)
Q Consensus 28 kG~~aVyVG~~~~~RfvVp~~~L~-hP--~F~~LL~~aeeEfG--~~~~~G~L~IPC~~~~F~~vl~ 89 (90)
...+.+-||. ++|.+..+-|. +| .|..|... ..++. .+. .|.+-|-.+...|..||.
T Consensus 5 ~~~v~LNVGG---~~f~t~~~TL~~~p~s~L~~~~~~-~~~~~~~~d~-~~~~fiDRdp~~F~~IL~ 66 (107)
T 3drz_A 5 SKWVRLNVGG---TYFLTTRQTLCRDPKSFLYRLCQA-DPDLDSDKDE-TGAYLIDRDPTYFGPVLN 66 (107)
T ss_dssp CCEEEEEETT---EEEEEEHHHHTSSTTSHHHHHHTT-CGGGGGGBCT-TSCEEECSCHHHHHHHHH
T ss_pred CCEEEEEECC---EEEEECHHHHhcCCCcchhHHHhc-CCCCCcCCCC-CceEEecCChHHHHHHHH
Confidence 4567888996 89999988775 44 46666432 12232 233 388999999999999873
No 8
>3n5b_B ASR0485 protein; PII, PIPX, transcription regulator, signal transducer; HET: ADP; 1.90A {Nostoc}
Probab=34.61 E-value=5.3 Score=26.90 Aligned_cols=10 Identities=50% Similarity=0.952 Sum_probs=8.0
Q ss_pred CcCchhHHHH
Q 034598 49 YLNHPSFIDL 58 (90)
Q Consensus 49 ~L~hP~F~~L 58 (90)
|||||.|--|
T Consensus 29 YLNHPTFGLL 38 (112)
T 3n5b_B 29 YINHPTWGLL 38 (112)
T ss_dssp EEEETTTEEE
T ss_pred hccCCccchh
Confidence 9999998543
No 9
>1yu8_X Villin; alpha helix, 3-10 helix, structural protein; 1.45A {Gallus gallus} SCOP: a.14.1.1 PDB: 1qqv_A 1yu5_X 2rjx_A 2rjy_A 1yu7_X 2rjv_A 2rjw_A 3nkj_A 3myc_A 3mya_A 3mye_X 1unc_A
Probab=34.19 E-value=10 Score=23.08 Aligned_cols=20 Identities=15% Similarity=0.331 Sum_probs=18.4
Q ss_pred cCcCchhHHHHHHHHHHhhC
Q 034598 48 SYLNHPSFIDLLNRAEEEFG 67 (90)
Q Consensus 48 ~~L~hP~F~~LL~~aeeEfG 67 (90)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgms~~eF~ 50 (67)
T 1yu8_X 31 NHLSDEDFKAVFGMTRSAFA 50 (67)
T ss_dssp GGSCHHHHHHHHSSCHHHHH
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999983
No 10
>3bux_B E3 ubiquitin-protein ligase CBL; TKB, signal transduction, proto-oncogene, complex, ATP-binding, glycoprotein, kinase, membrane, nucleotide-binding; HET: PTR; 1.35A {Homo sapiens} SCOP: a.39.1.7 a.48.1.1 d.93.1.1 PDB: 1yvh_A* 3bun_B* 3buo_B* 3bum_B* 3buw_B* 3ob1_B* 3ob2_B* 3plf_B* 2cbl_A* 1b47_A 3pfv_A*
Probab=32.48 E-value=1.4e+02 Score=23.28 Aligned_cols=53 Identities=25% Similarity=0.313 Sum_probs=35.5
Q ss_pred HHHHHHhhhcCCC-------CCCCcceEEE-EecCCcceEEEEEccCcCchhHHHHHHHHHHhh
Q 034598 11 NAKQILKLHSKDQ-------SGVPKGHVVV-YVGELQKTRFVVPISYLNHPSFIDLLNRAEEEF 66 (90)
Q Consensus 11 ~~~~~~~~~~~~~-------~~vpkG~~aV-yVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEf 66 (90)
.+++.|.++.+++ +-..-|..|+ ||-.+..-.=.|| .|-|++|+|++-.+|-|
T Consensus 254 Ev~~~L~~~~~kpGsYIfR~ScTrlGqwAIgyV~~~~~I~qtip---~nk~l~qal~dg~~eg~ 314 (329)
T 3bux_B 254 EVKARLQKFIHKPGSYIFRLSCTRLGQWAIGYVTADGNILQTIP---HNKPLFQALIDGFREGF 314 (329)
T ss_dssp HHHHHHGGGTTSTTEEEEEECSSSTTSEEEEEECTTSCEEEECC---SSCCHHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCCCcEEEEeccCccCceEEEEECCCCceeeeCC---CCcHHHHHHHhccccce
Confidence 4567777653332 3456688887 6765233444444 79999999999998865
No 11
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A
Probab=32.43 E-value=37 Score=20.93 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=36.6
Q ss_pred EEEEecCCcceEEEEEccCc--CchhHHHHHHHHHHhhCCccCCCcEEe-e-CcHHHHHhhhc
Q 034598 31 VVVYVGELQKTRFVVPISYL--NHPSFIDLLNRAEEEFGFNHPMGGLTI-P-CREDAFINITF 89 (90)
Q Consensus 31 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~I-P-C~~~~F~~vl~ 89 (90)
+.+.||+ ++|-+.-..| ..|.|++++...-.| .. ..|.| + .+.+.|+.++.
T Consensus 32 v~l~v~~---~~~~aHk~iLaa~S~~F~~~f~~~~~e----~~-~~i~l~~~~~~~~f~~ll~ 86 (127)
T 1r29_A 32 VVIVVSR---EQFRAHKTVLMACSGLFYSIFTDQLKR----NL-SVINLDPEINPEGFNILLD 86 (127)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHTSTTTT----TC-SEEECCTTSCHHHHHHHHH
T ss_pred EEEEECC---EEEehHHHHHHHhCHHHHHHhcCCccC----CC-CEEEeCCCCCHHHHHHHHH
Confidence 4456665 6777777777 689999999865444 23 68999 4 67888888763
No 12
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2
Probab=31.99 E-value=26 Score=22.98 Aligned_cols=58 Identities=24% Similarity=0.271 Sum_probs=40.9
Q ss_pred CcceEEEEecCCcceEEEEEccCcC-chhHHHHHHHHHHhhCCccCCCcEEeeCcHHHHHhhhc
Q 034598 27 PKGHVVVYVGELQKTRFVVPISYLN-HPSFIDLLNRAEEEFGFNHPMGGLTIPCREDAFINITF 89 (90)
Q Consensus 27 pkG~~aVyVG~~~~~RfvVp~~~L~-hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~ 89 (90)
....+.+-||. +||.+..+-|. +|. .+|..++...-++.+.|.+-|-.+...|..||.
T Consensus 11 ~~~~V~LNVGG---~~F~t~~~TL~~~p~--S~L~~~~~~~~~~~~~g~~FiDRdp~~F~~ILn 69 (124)
T 1s1g_A 11 QDELIVLNVSG---RRFQTWRTTLERYPD--TLLGSTEKEFFFNEDTKEYFFDRDPEVFRCVLN 69 (124)
T ss_dssp -CCEEEEEETT---EEEEEEHHHHTTSTT--SSTTSSGGGGTBCSSSCSEEECSCHHHHHHHHH
T ss_pred CCCEEEEEeCC---EEEEEeHHHHhcCCC--ceecccCCcccccCCCCcEEEcCChHHHHHHHH
Confidence 45678888996 99999987763 332 233334444445555689999999999999873
No 13
>1ujs_A Actin-binding LIM protein homologue; VHP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, structural protein; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 2l3x_A
Probab=31.22 E-value=14 Score=23.67 Aligned_cols=20 Identities=20% Similarity=0.366 Sum_probs=18.6
Q ss_pred cCcCchhHHHHHHHHHHhhC
Q 034598 48 SYLNHPSFIDLLNRAEEEFG 67 (90)
Q Consensus 48 ~~L~hP~F~~LL~~aeeEfG 67 (90)
.||+.-.|++++.++.+||-
T Consensus 46 ~YLSdedF~~vFgMsr~eF~ 65 (88)
T 1ujs_A 46 RHLSQEEFYQVFGMTISEFD 65 (88)
T ss_dssp GGSCTTHHHHHHSSCHHHHT
T ss_pred hcCCHHHHHHHHCcCHHHHH
Confidence 69999999999999999984
No 14
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens}
Probab=30.50 E-value=69 Score=19.77 Aligned_cols=48 Identities=25% Similarity=0.340 Sum_probs=35.2
Q ss_pred EEEEecCCcceEEEEEccCcC--chhHHHHHHHHHHhhCCccCCCcEEee--CcHHHHHhhhc
Q 034598 31 VVVYVGELQKTRFVVPISYLN--HPSFIDLLNRAEEEFGFNHPMGGLTIP--CREDAFINITF 89 (90)
Q Consensus 31 ~aVyVG~~~~~RfvVp~~~L~--hP~F~~LL~~aeeEfG~~~~~G~L~IP--C~~~~F~~vl~ 89 (90)
+.+.||+ ++|-+.-..|. .|.|++++... .. ..+.|| .+.+.|+.++.
T Consensus 36 v~l~v~~---~~~~~Hk~vLaa~S~~F~~~f~~~-------~~-~~i~l~~~~~~~~f~~ll~ 87 (129)
T 3ga1_A 36 VSVVVKG---HAFKAHRAVLAASSSYFRDLFNNS-------RS-AVVELPAAVQPQSFQQILS 87 (129)
T ss_dssp EEEEETT---EEEEECHHHHHHHBHHHHHHHHHC-------CC-SEEECCTTCCHHHHHHHHH
T ss_pred eEEEECC---EEEEehHHHHHHcCHHHHHHHcCC-------CC-CEEEECCCCCHHHHHHHHH
Confidence 4666775 67777666664 68999999875 23 689997 78899988763
No 15
>1qzp_A Dematin; villin headpiece, actin binding domain, protein binding; NMR {Homo sapiens} SCOP: a.14.1.1 PDB: 1zv6_A
Probab=30.45 E-value=9 Score=23.29 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=17.9
Q ss_pred cCcCchhHHHHHHHHHHhh
Q 034598 48 SYLNHPSFIDLLNRAEEEF 66 (90)
Q Consensus 48 ~~L~hP~F~~LL~~aeeEf 66 (90)
.||+.-.|++++.++.+||
T Consensus 32 ~yLsdedF~~vFgmsr~eF 50 (68)
T 1qzp_A 32 RHLSAEDFSRVFAMSPEEF 50 (68)
T ss_dssp GGBCHHHHHHHSSSCHHHH
T ss_pred hhCCHHHHHHHHCcCHHHH
Confidence 6999999999999999998
No 16
>3pmi_A PWWP domain-containing protein MUM1; structural genomics consortium, SGC, protein binding, nucLeu; HET: UNL; 2.82A {Homo sapiens}
Probab=30.26 E-value=18 Score=24.91 Aligned_cols=29 Identities=34% Similarity=0.493 Sum_probs=25.8
Q ss_pred cceEEEEEccCcCch---hHHHHHHHHHHhhC
Q 034598 39 QKTRFVVPISYLNHP---SFIDLLNRAEEEFG 67 (90)
Q Consensus 39 ~~~RfvVp~~~L~hP---~F~~LL~~aeeEfG 67 (90)
+++=|-||+.-|+|= .-++|+++|.|.||
T Consensus 47 ekrGi~V~LrrLK~fDC~ek~~L~~rAre~Y~ 78 (134)
T 3pmi_A 47 KMKGFTVSLKSLKHFDCKEKQTLLNQAREDFN 78 (134)
T ss_dssp TSCCEEEEGGGCEETTSTTHHHHHHHHTTTCH
T ss_pred ccCceEeEcccCCCCChHhHHHHHHHHHHHhc
Confidence 678899999999985 48999999999997
No 17
>2k6m_S Supervillin; SVHP, HP, headpiece, archvillin, actin capping, actin-binding, alternative splicing, calcium, cytoplasm, cytoskeleton, membrane; NMR {Homo sapiens} PDB: 2k6n_A
Probab=28.34 E-value=11 Score=22.82 Aligned_cols=20 Identities=25% Similarity=0.448 Sum_probs=18.6
Q ss_pred cCcCchhHHHHHHHHHHhhC
Q 034598 48 SYLNHPSFIDLLNRAEEEFG 67 (90)
Q Consensus 48 ~~L~hP~F~~LL~~aeeEfG 67 (90)
.||+.-.|++++.++.+||-
T Consensus 31 ~yLsdedF~~vFgmsr~eF~ 50 (67)
T 2k6m_S 31 IYLTDEDFEFALDMTRDEYN 50 (67)
T ss_dssp GGSCHHHHHHHTSSCHHHHT
T ss_pred hhCCHHHHHHHHCcCHHHHH
Confidence 79999999999999999984
No 18
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=27.35 E-value=36 Score=27.19 Aligned_cols=43 Identities=28% Similarity=0.361 Sum_probs=29.5
Q ss_pred CCCcceEEEEecC---------CcceEEEEEccCcCchhHHHHHHHHHHhhCC
Q 034598 25 GVPKGHVVVYVGE---------LQKTRFVVPISYLNHPSFIDLLNRAEEEFGF 68 (90)
Q Consensus 25 ~vpkG~~aVyVG~---------~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~ 68 (90)
..|++++-+.|.| .-++|-.-=++ +-||.||+.|.+++++.|+
T Consensus 403 tt~~~~v~~vvTE~Gva~l~G~s~~eRa~~lI~-iAHPdfR~~L~~~A~~~~~ 454 (455)
T 3qli_A 403 TTPRIDTHYIVTEFGAVNLKGLSSTERALRIIE-LAHPDFRDELTQAAKKMHL 454 (455)
T ss_dssp SBCTTTCCEEEETTEEEECTTCCHHHHHHHHHT-TSCHHHHHHHHHHHHHTTC
T ss_pred ccCcccccEEEeccEEEECCCCCHHHHHHHHHH-ccCcchHHHHHHHHHHcCC
Confidence 4577777777765 12333333334 8999999999988888764
No 19
>1zo0_A ODC-AZ, ornithine decarboxylase antizyme; ornithine decarboxylase inhibitor, lyase inhibitor; NMR {Rattus norvegicus} SCOP: d.108.1.7
Probab=26.78 E-value=37 Score=22.94 Aligned_cols=40 Identities=30% Similarity=0.444 Sum_probs=28.1
Q ss_pred cceEEEEecCCcceEEE-EEccCc---CchhHHHHHHHHHHhhCCcc
Q 034598 28 KGHVVVYVGELQKTRFV-VPISYL---NHPSFIDLLNRAEEEFGFNH 70 (90)
Q Consensus 28 kG~~aVyVG~~~~~Rfv-Vp~~~L---~hP~F~~LL~~aeeEfG~~~ 70 (90)
--+-+|..|+ .=|+ ||..-+ +--.|.+|||-|||+.+.++
T Consensus 35 ~~W~~Vl~~~---~Lyv~iP~~~~~~gsKe~fv~LLEfAEe~L~~~~ 78 (126)
T 1zo0_A 35 VTWRAVWNGG---GLYIELPAGPLPEGSKDSFAALLEFAEEQLRADH 78 (126)
T ss_dssp EEEEEEEETT---EEEEECSSCCCSSCCSHHHHHHHHHHHHHHCCCC
T ss_pred ceEEEEEeCC---eEEEEcCCccccccchHHHHHHHHHHHHhcCCCE
Confidence 3445566653 5555 675443 56679999999999999875
No 20
>1w8x_N Protein P31, protein C, GPC; virus, P3 major capsid protein, P30 TAPE measure, P31 penton protein, P16 membrane protein; 4.20A {Enterobacteria phage PRD1} SCOP: i.6.1.1
Probab=26.15 E-value=13 Score=25.13 Aligned_cols=29 Identities=28% Similarity=0.431 Sum_probs=17.8
Q ss_pred CCcceEEEEecCCcceEEE----------EEccCcCchhHH
Q 034598 26 VPKGHVVVYVGELQKTRFV----------VPISYLNHPSFI 56 (90)
Q Consensus 26 vpkG~~aVyVG~~~~~Rfv----------Vp~~~L~hP~F~ 56 (90)
-.+||+|+.|-. +-+|+ +|+-+||.|.-+
T Consensus 85 G~QGYfPlL~~~--~~KFv~~~~~~GKks~P~~FlNF~IA~ 123 (126)
T 1w8x_N 85 GKQGYFPLLVPG--RAKFVARHLGSGKKSVPLFFLNFTIAQ 123 (126)
T ss_dssp CCCSSCCEEECC--SSSSEEEEEEEESSCCCCSCCC-----
T ss_pred CCcccceeeccc--hhhhhhhhhcCCCcceeeEEEeceeee
Confidence 457999999963 44454 688888887643
No 21
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens}
Probab=25.92 E-value=86 Score=18.42 Aligned_cols=54 Identities=19% Similarity=0.185 Sum_probs=34.9
Q ss_pred EEEEecC-CcceEEEEEccCc--CchhHHHHHHHHHHhhCCccCCCcEEee-CcHHHHHhhhc
Q 034598 31 VVVYVGE-LQKTRFVVPISYL--NHPSFIDLLNRAEEEFGFNHPMGGLTIP-CREDAFINITF 89 (90)
Q Consensus 31 ~aVyVG~-~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~F~~vl~ 89 (90)
+.+.||+ ++.++|-+.-..| ..|.|++++...-.|-. ..+.|| .+.+.|+.++.
T Consensus 11 v~l~v~~~~~~~~~~~Hk~iLa~~S~~F~~~f~~~~~e~~-----~~i~l~~~~~~~f~~~l~ 68 (109)
T 2vkp_A 11 VHFVVGPPGATRTVPAHKYVLAVGSSVFYAMFYGDLAEVK-----SEIHIPDVEPAAFLILLK 68 (109)
T ss_dssp EEEEESSTTSCEEEEECHHHHHHHCHHHHHHHC------C-----CEEEETTSCHHHHHHHHH
T ss_pred EEEEECCCCCcEEEEeeHHHHHHcCHHHHHHhcCCcccCC-----CeEEeCCCCHHHHHHHHH
Confidence 3455664 1357888888887 68999999975433322 468887 58888888763
No 22
>1y6i_A Mg-chelatase cofactor GUN4; helix-bundle, porphyrin binding, ligand binding protein; 1.78A {Synechocystis SP} SCOP: a.118.1.22 a.261.1.1
Probab=25.36 E-value=5.3 Score=29.68 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=20.1
Q ss_pred CCCCcceEEEEecCCcceEEEEEccCcCchhHH
Q 034598 24 SGVPKGHVVVYVGELQKTRFVVPISYLNHPSFI 56 (90)
Q Consensus 24 ~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F~ 56 (90)
..+|+||+|..-.- -.-| +=.+.|+||.|.
T Consensus 200 l~AP~GHLP~~~~l-rG~~--l~~~ll~hpa~~ 229 (233)
T 1y6i_A 200 LSAPQGHLPLLNQL-RGVR--VAESLYRHPVWS 229 (233)
T ss_dssp TTSCTTCCSCCCCT-TCTH--HHHHHHTSTHHH
T ss_pred CCCCCCCCCCcccc-chHH--HHHHHHCCcccc
Confidence 46899999986421 0111 556789999884
No 23
>1z3x_A Putative cytidyltransferase; transferase activator; 1.50A {Thermosynechococcus elongatus} SCOP: a.118.1.22 a.261.1.1 PDB: 1z3y_A
Probab=24.97 E-value=2.7 Score=31.45 Aligned_cols=29 Identities=28% Similarity=0.447 Sum_probs=19.2
Q ss_pred CCCCcceEEEEecCCcceEEEEEccCcCchhH
Q 034598 24 SGVPKGHVVVYVGELQKTRFVVPISYLNHPSF 55 (90)
Q Consensus 24 ~~vpkG~~aVyVG~~~~~RfvVp~~~L~hP~F 55 (90)
..+|+||+|..-. .+=.-+=.+.|+||.|
T Consensus 208 l~AP~GHLP~~~~---lrGv~l~~~ll~hpa~ 236 (238)
T 1z3x_A 208 LSAPRGHLPLTNQ---LRGVQVLNALLNHPAW 236 (238)
T ss_dssp TTSCTTCCSCCCC---TTCSHHHHHHHTCGGG
T ss_pred CCCCCCCCCcCcc---cccHHHHHHHHcCccc
Confidence 4689999998642 1112244678899877
No 24
>3ezo_A Malonyl COA-acyl carrier protein transacylase; ssgcid, acyl-carrier-protein S-malonyltransferase, acyltransferase, transferase; 2.05A {Burkholderia pseudomallei 1710B}
Probab=24.43 E-value=48 Score=24.33 Aligned_cols=40 Identities=13% Similarity=0.223 Sum_probs=25.8
Q ss_pred ceEEEEecCCcceEEEEEccCcCchhHHHHHHHHHHhhCCc
Q 034598 29 GHVVVYVGELQKTRFVVPISYLNHPSFIDLLNRAEEEFGFN 69 (90)
Q Consensus 29 G~~aVyVG~~~~~RfvVp~~~L~hP~F~~LL~~aeeEfG~~ 69 (90)
...-|+-|.+. +..=.=-+.+++|.|++.++++.+-+|++
T Consensus 10 ~~~f~F~GQGs-Q~~gMg~~L~~~p~fr~~~~~~~~~lg~~ 49 (318)
T 3ezo_A 10 KFAFVFPGQGS-QSVGMLNAFADVAVVRETLDEASDALGQD 49 (318)
T ss_dssp CEEEEECCTTC-CCTTTTGGGTTCHHHHHHHHHHHHHHSSC
T ss_pred CeEEEECCcch-hhhhHHHHHhhCHHHHHHHHHHHHHhCCC
Confidence 35557777631 11111122238999999999999999875
No 25
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2
Probab=24.34 E-value=14 Score=23.50 Aligned_cols=54 Identities=26% Similarity=0.303 Sum_probs=32.1
Q ss_pred EEEEecCCcceEEEEEccCc-CchhHHHHHHHHHHhhCCccCCCcEEeeCcHHHHHhhhc
Q 034598 31 VVVYVGELQKTRFVVPISYL-NHPSFIDLLNRAEEEFGFNHPMGGLTIPCREDAFINITF 89 (90)
Q Consensus 31 ~aVyVG~~~~~RfvVp~~~L-~hP~F~~LL~~aeeEfG~~~~~G~L~IPC~~~~F~~vl~ 89 (90)
+.+-||. +||.+..+-| ++|. .+|..++...-++.+.|.+-|-.+...|..||.
T Consensus 2 V~LNVGG---~~f~t~~~TL~~~p~--s~L~~~~~~~~~~~~~~~~FiDRdp~~F~~ILn 56 (105)
T 1nn7_A 2 IVLNVSG---TRFQTWQDTLERYPD--TLLGSSERDFFYHPETQQYFFDRDPDIFRHILN 56 (105)
T ss_dssp EEEEETT---EEEEECHHHHHTSCS--SSTTSGGGGGGEEGGGTEEEECSCTTTHHHHHH
T ss_pred EEEEECC---EEEEEeHHHHhcCCC--ccccccCCcccccCCCCcEEEeCCcHHHHHHHH
Confidence 3456775 7888876655 2332 122223333334444588888888888888873
No 26
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A
Probab=22.72 E-value=1.1e+02 Score=18.35 Aligned_cols=52 Identities=19% Similarity=0.195 Sum_probs=34.0
Q ss_pred EEEEecCCcceEEEEEccCc--CchhHHHHHHHHHHhhCCccCCCcEEee-CcHHHHHhhhc
Q 034598 31 VVVYVGELQKTRFVVPISYL--NHPSFIDLLNRAEEEFGFNHPMGGLTIP-CREDAFINITF 89 (90)
Q Consensus 31 ~aVyVG~~~~~RfvVp~~~L--~hP~F~~LL~~aeeEfG~~~~~G~L~IP-C~~~~F~~vl~ 89 (90)
+.+.||+ ++|-+.-..| ..|.|++++...-.| ... ..+.|+ .+.+.|+.++.
T Consensus 28 v~l~v~~---~~~~aHk~vLaa~S~~F~~~f~~~~~e---~~~-~~i~l~~~~~~~f~~ll~ 82 (120)
T 2if5_A 28 VVILVEG---REFPTHRSVLAACSQYFKKLFTSGAVV---DQQ-NVYEIDFVSAEALTALMD 82 (120)
T ss_dssp EEEEETT---EEEEECHHHHHHHCHHHHHHHHC--------CC-SEEECCSSCHHHHHHHHH
T ss_pred eEEEECC---EEEeHHHHHHHHhCHHHHHHhcCCccc---cCC-ceEEeCCCCHHHHHHHHH
Confidence 3456665 6777777777 479999999754333 122 578888 58888887763
No 27
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=22.42 E-value=56 Score=16.72 Aligned_cols=13 Identities=31% Similarity=0.848 Sum_probs=10.2
Q ss_pred HHHHHHHHHHhhC
Q 034598 55 FIDLLNRAEEEFG 67 (90)
Q Consensus 55 F~~LL~~aeeEfG 67 (90)
..+|.+.-||+||
T Consensus 18 l~eLvk~lEe~fG 30 (30)
T 1zav_U 18 LAELVKKLEDKFG 30 (30)
T ss_dssp HHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC
Confidence 4577888889987
No 28
>1wy3_A Villin; structural protein; HET: NLE; 0.95A {Synthetic} PDB: 1wy4_A 1yri_A* 1yrf_A* 2f4k_A* 1vii_A 3trv_A* 3trw_A 3tjw_B* 3trv_B* 3try_A* 2ppz_A 2jm0_A* 3tjw_A* 3iur_B*
Probab=20.84 E-value=25 Score=18.76 Aligned_cols=17 Identities=18% Similarity=0.405 Sum_probs=13.5
Q ss_pred cCchhHHHHHHHHHHhh
Q 034598 50 LNHPSFIDLLNRAEEEF 66 (90)
Q Consensus 50 L~hP~F~~LL~~aeeEf 66 (90)
|+...|++++.++.+||
T Consensus 1 Lsd~dF~~vFgmsr~eF 17 (35)
T 1wy3_A 1 LSDEDFKAVFGMTRSAF 17 (35)
T ss_dssp CCHHHHHHHHSSCHHHH
T ss_pred CCHHHHHHHHCCCHHHH
Confidence 56677888888888887
Done!