BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034603
         (89 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2JE0|A Chain A, Crystal Structure Of Pp32
 pdb|2JE0|B Chain B, Crystal Structure Of Pp32
 pdb|2JE0|C Chain C, Crystal Structure Of Pp32
 pdb|2JE0|D Chain D, Crystal Structure Of Pp32
 pdb|2JE0|E Chain E, Crystal Structure Of Pp32
 pdb|2JE0|F Chain F, Crystal Structure Of Pp32
 pdb|2JE1|A Chain A, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|B Chain B, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|C Chain C, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
 pdb|2JE1|D Chain D, The Crystal Structure Of The Tumor Supressor Protein Pp32
           ( Anp32a):structural Insights Into The Anp32 Family Of
           Proteins
          Length = 149

 Score = 27.7 bits (60), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 33/73 (45%), Gaps = 9/73 (12%)

Query: 16  AEKYLSGFTQVHENMLSTKTYFELRRQKF-----LEALDKHERVKALDILMKDIKAFSTY 70
           ++  +SG  +V        T+  L   K      +E L K E +K+LD+   ++   + Y
Sbjct: 72  SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDY 131

Query: 71  NEEVFKEASLLLP 83
            E VFK    LLP
Sbjct: 132 RENVFK----LLP 140


>pdb|2ELL|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
           Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
           Member B
 pdb|2RR6|A Chain A, Solution Structure Of The Leucine Rich Repeat Of Human
           Acidic Leucine- Rich Nuclear Phosphoprotein 32 Family
           Member B
          Length = 168

 Score = 26.9 bits (58), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 10/73 (13%)

Query: 11  GKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTY 70
           G LD   + L   T  H N+   K    L+    LE L K E +K+LD+   ++   + Y
Sbjct: 85  GGLDMLAEKLPNLT--HLNLSGNK----LKDISTLEPLKKLECLKSLDLFNCEVTNLNDY 138

Query: 71  NEEVFKEASLLLP 83
            E VFK    LLP
Sbjct: 139 RESVFK----LLP 147


>pdb|2JQD|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of Lanp
          Length = 169

 Score = 26.6 bits (57), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 21/73 (28%), Positives = 32/73 (43%), Gaps = 9/73 (12%)

Query: 16  AEKYLSGFTQVHENMLSTKTYFELRRQKF-----LEALDKHERVKALDILMKDIKAFSTY 70
           +E  +SG  +V         +  L   K      +E L K E +K+LD+   ++   + Y
Sbjct: 77  SENRISGDLEVLAEKCPNLKHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNAY 136

Query: 71  NEEVFKEASLLLP 83
            E VFK    LLP
Sbjct: 137 RENVFK----LLP 145


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.320    0.134    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,358,514
Number of Sequences: 62578
Number of extensions: 74811
Number of successful extensions: 192
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 12
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)