BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034603
         (89 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1
          Length = 1131

 Score =  124 bits (310), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/87 (65%), Positives = 71/87 (81%)

Query: 1   MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDIL 60
           MK+FED V  G  DE EKYLSGFT+V +N  S K +FE+R+QK+LEALDKH+R KA+DIL
Sbjct: 38  MKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDIL 97

Query: 61  MKDIKAFSTYNEEVFKEASLLLPLENF 87
           +KD+K FST+NEE+FKE + LL LENF
Sbjct: 98  VKDLKVFSTFNEELFKEITQLLTLENF 124


>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3
          Length = 1120

 Score =  122 bits (307), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/87 (64%), Positives = 71/87 (81%)

Query: 1   MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDIL 60
           MK+FED V  G  DE EKYLSGFT+V +N  S K +FE+R+QK+LEALD+H+R KA+DIL
Sbjct: 38  MKYFEDEVHNGNWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDIL 97

Query: 61  MKDIKAFSTYNEEVFKEASLLLPLENF 87
           +KD+K FST+NEE+FKE + LL LENF
Sbjct: 98  VKDLKVFSTFNEELFKEITQLLTLENF 124


>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2
          Length = 1135

 Score =  117 bits (293), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/87 (59%), Positives = 71/87 (81%)

Query: 1   MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDIL 60
           M++FED V AG+ D+ EKYLSGFT+V +N  S K +FE+R+QK+LEALDK +  KA+DIL
Sbjct: 38  MRYFEDSVTAGEWDDVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDIL 97

Query: 61  MKDIKAFSTYNEEVFKEASLLLPLENF 87
           +K++K FST+NEE+FKE ++LL L NF
Sbjct: 98  VKELKVFSTFNEELFKEITMLLTLTNF 124


>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2
          Length = 1131

 Score =  116 bits (290), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 51/87 (58%), Positives = 72/87 (82%)

Query: 1   MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDIL 60
           +K+FE+  LAG+ DE EKYLSGFT+V +N  S K +FE+R+QK+LEALD+++R KA++IL
Sbjct: 38  IKYFEEKALAGEWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEIL 97

Query: 61  MKDIKAFSTYNEEVFKEASLLLPLENF 87
            KD+K F+T+NEE++KE + LL LENF
Sbjct: 98  AKDLKVFATFNEELYKEITQLLTLENF 124


>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1
          Length = 1108

 Score =  110 bits (276), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 47/86 (54%), Positives = 71/86 (82%)

Query: 2   KHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILM 61
           K+F++ VLAG+ D+ E YLSGFT+V +N  S K +FE+R+QK+LEALD+ E+ KA++IL+
Sbjct: 39  KYFDEKVLAGEWDDVETYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILV 98

Query: 62  KDIKAFSTYNEEVFKEASLLLPLENF 87
           +D++ FST+NEE++KE + LL L+NF
Sbjct: 99  QDLRVFSTFNEELYKEITQLLTLQNF 124


>sp|Q9D495|SYCE1_MOUSE Synaptonemal complex central element protein 1 OS=Mus musculus
           GN=Syce1 PE=1 SV=1
          Length = 329

 Score = 30.4 bits (67), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 9/58 (15%)

Query: 16  AEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEE 73
           AE++L    Q HE +       + +RQ+  E L+KH     + IL     A ST NEE
Sbjct: 252 AEEFLEAAAQQHEQLQQRCHQLQQKRQRLKEELEKH----GVQIL-----AHSTQNEE 300


>sp|Q5SP67|WDR26_DANRE WD repeat-containing protein 26 OS=Danio rerio GN=wdr26 PE=1 SV=1
          Length = 576

 Score = 29.6 bits (65), Expect = 5.7,   Method: Composition-based stats.
 Identities = 20/71 (28%), Positives = 37/71 (52%), Gaps = 2/71 (2%)

Query: 4   FEDMVLAGKLDEAEKYLSGFTQV-HENMLSTKTYFELRRQKFLEALDKHERVKALDILMK 62
           F + V+ G+ D+AE  L+    + H      +  F L +QK+LE L+  + ++AL +L  
Sbjct: 91  FRNHVMEGEWDKAENDLNELKALMHSPNAIVRMKFLLLQQKYLEYLEDGKVLEALQVLRG 150

Query: 63  DIKAFSTYNEE 73
           ++     YN +
Sbjct: 151 ELTPLK-YNTD 160


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.320    0.134    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,889,528
Number of Sequences: 539616
Number of extensions: 961929
Number of successful extensions: 3097
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 25
Number of HSP's that attempted gapping in prelim test: 3092
Number of HSP's gapped (non-prelim): 30
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)