Query 034603
Match_columns 89
No_of_seqs 111 out of 205
Neff 5.8
Searched_HMMs 29240
Date Mon Mar 25 07:03:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034603.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034603hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dba_A Smooth muscle cell asso 90.9 1 3.5E-05 26.5 6.3 69 7-79 38-106 (148)
2 4gco_A Protein STI-1; structur 90.6 0.64 2.2E-05 28.5 5.3 31 50-81 94-124 (126)
3 4ga2_A E3 SUMO-protein ligase 88.9 1.4 4.6E-05 27.6 6.0 68 8-82 42-109 (150)
4 1hxi_A PEX5, peroxisome target 88.6 1 3.4E-05 27.3 5.0 69 6-81 26-94 (121)
5 1elw_A TPR1-domain of HOP; HOP 88.4 1.9 6.4E-05 24.0 5.8 66 7-79 14-79 (118)
6 2xev_A YBGF; tetratricopeptide 88.3 2.1 7.3E-05 24.8 6.3 55 7-65 12-67 (129)
7 2xcb_A PCRH, regulatory protei 87.7 1.6 5.5E-05 26.6 5.7 67 7-80 28-94 (142)
8 3urz_A Uncharacterized protein 87.5 0.98 3.3E-05 29.6 4.8 74 6-82 13-98 (208)
9 3upv_A Heat shock protein STI1 85.7 3.1 0.00011 24.3 6.0 68 7-81 14-81 (126)
10 1elw_A TPR1-domain of HOP; HOP 85.2 1.8 6.2E-05 24.1 4.6 68 7-81 48-115 (118)
11 2vgx_A Chaperone SYCD; alterna 84.8 2.7 9.2E-05 26.2 5.7 17 8-24 32-48 (148)
12 4gco_A Protein STI-1; structur 84.6 3.5 0.00012 25.0 6.0 69 7-82 23-91 (126)
13 1na3_A Designed protein CTPR2; 84.4 3.3 0.00011 22.3 6.0 69 7-82 19-87 (91)
14 3gyz_A Chaperone protein IPGC; 84.2 2.2 7.7E-05 27.3 5.2 68 7-81 46-113 (151)
15 2lni_A Stress-induced-phosphop 83.8 4.3 0.00015 23.1 6.5 66 7-79 26-91 (133)
16 3u4t_A TPR repeat-containing p 83.4 4.8 0.00016 26.2 6.6 14 10-23 50-63 (272)
17 3sz7_A HSC70 cochaperone (SGT) 83.0 4.2 0.00014 25.0 6.0 68 7-81 21-88 (164)
18 2pl2_A Hypothetical conserved 82.9 5 0.00017 26.2 6.6 70 6-82 14-83 (217)
19 1na0_A Designed protein CTPR3; 82.8 4.4 0.00015 22.5 6.0 17 7-23 19-35 (125)
20 2vyi_A SGTA protein; chaperone 82.8 4.6 0.00016 22.7 6.6 17 7-23 22-38 (131)
21 2r5s_A Uncharacterized protein 82.8 3.3 0.00011 26.0 5.5 17 7-23 16-32 (176)
22 3ieg_A DNAJ homolog subfamily 82.4 3 0.0001 27.9 5.4 72 7-81 244-315 (359)
23 2vyi_A SGTA protein; chaperone 82.3 3 0.0001 23.5 4.7 69 7-82 56-124 (131)
24 1na0_A Designed protein CTPR3; 81.8 3.2 0.00011 23.1 4.7 69 7-82 53-121 (125)
25 2xev_A YBGF; tetratricopeptide 81.2 4.9 0.00017 23.1 5.5 69 7-80 49-118 (129)
26 3as5_A MAMA; tetratricopeptide 81.2 6.6 0.00023 23.4 7.1 67 7-80 18-84 (186)
27 3qky_A Outer membrane assembly 81.2 6.7 0.00023 25.9 6.8 71 6-80 24-97 (261)
28 4ga2_A E3 SUMO-protein ligase 80.3 1.4 4.7E-05 27.6 2.9 71 8-85 76-147 (150)
29 2dba_A Smooth muscle cell asso 80.1 5.5 0.00019 23.2 5.5 69 7-82 75-143 (148)
30 3q49_B STIP1 homology and U bo 80.0 6.2 0.00021 22.9 5.7 69 6-81 18-86 (137)
31 2fo7_A Synthetic consensus TPR 80.0 3.4 0.00012 23.1 4.4 16 49-64 81-96 (136)
32 2kck_A TPR repeat; tetratricop 79.2 5.9 0.0002 21.6 5.9 69 7-82 16-86 (112)
33 2pl2_A Hypothetical conserved 79.2 3.3 0.00011 27.2 4.7 66 9-82 130-195 (217)
34 2kc7_A BFR218_protein; tetratr 79.0 5.8 0.0002 22.0 5.2 63 6-75 9-72 (99)
35 3hym_B Cell division cycle pro 78.9 6.1 0.00021 26.1 6.0 69 5-80 30-98 (330)
36 2vgx_A Chaperone SYCD; alterna 78.6 3.9 0.00013 25.4 4.7 53 7-65 65-117 (148)
37 3mkr_A Coatomer subunit epsilo 78.1 3.9 0.00013 28.4 5.0 20 7-26 140-159 (291)
38 3u4t_A TPR repeat-containing p 77.8 6.6 0.00022 25.5 5.8 15 9-23 120-134 (272)
39 2y4t_A DNAJ homolog subfamily 77.6 4.2 0.00015 28.6 5.1 72 6-80 266-337 (450)
40 3ma5_A Tetratricopeptide repea 75.8 8.5 0.00029 22.0 5.4 70 7-82 17-87 (100)
41 3uq3_A Heat shock protein STI1 75.6 8.1 0.00028 24.5 5.7 67 8-81 150-216 (258)
42 2vq2_A PILW, putative fimbrial 75.4 10 0.00034 23.5 6.0 17 7-23 18-34 (225)
43 3vtx_A MAMA; tetratricopeptide 75.3 6.9 0.00024 24.1 5.2 63 9-78 17-79 (184)
44 3hym_B Cell division cycle pro 75.1 11 0.00038 24.8 6.4 69 7-82 246-314 (330)
45 1fch_A Peroxisomal targeting s 75.0 6.4 0.00022 26.7 5.3 70 6-82 73-142 (368)
46 2fbn_A 70 kDa peptidylprolyl i 74.6 7.6 0.00026 24.6 5.3 69 7-82 98-166 (198)
47 3ieg_A DNAJ homolog subfamily 74.3 11 0.00037 25.1 6.2 70 5-81 128-197 (359)
48 3mkq_A Coatomer beta'-subunit; 74.2 6.6 0.00022 30.1 5.7 71 3-81 605-690 (814)
49 3qou_A Protein YBBN; thioredox 74.1 7.5 0.00026 26.7 5.5 17 8-24 162-178 (287)
50 3as5_A MAMA; tetratricopeptide 72.8 11 0.00037 22.4 5.5 15 9-23 54-68 (186)
51 3cv0_A Peroxisome targeting si 72.6 11 0.00039 24.7 6.0 70 6-82 30-99 (327)
52 4gcn_A Protein STI-1; structur 71.2 10 0.00035 22.7 5.1 30 49-80 95-124 (127)
53 2q7f_A YRRB protein; TPR, prot 71.2 12 0.00042 23.5 5.7 13 10-22 104-116 (243)
54 1a17_A Serine/threonine protei 70.7 14 0.00047 21.8 6.6 16 8-23 24-39 (166)
55 3vtx_A MAMA; tetratricopeptide 70.3 13 0.00046 22.7 5.7 32 49-81 119-150 (184)
56 2ho1_A Type 4 fimbrial biogene 70.2 18 0.00063 23.0 6.8 14 10-23 118-131 (252)
57 1elr_A TPR2A-domain of HOP; HO 69.7 9.3 0.00032 21.4 4.5 55 6-66 13-67 (131)
58 2ion_A PDCD4, programmed cell 69.5 3.3 0.00011 27.6 2.7 20 45-65 17-36 (152)
59 2q7f_A YRRB protein; TPR, prot 69.3 10 0.00035 23.9 5.0 67 7-80 135-201 (243)
60 3k9i_A BH0479 protein; putativ 69.3 11 0.00036 21.9 4.8 61 7-74 37-97 (117)
61 1p5q_A FKBP52, FK506-binding p 69.3 7.6 0.00026 27.5 4.8 69 7-82 206-274 (336)
62 1ihg_A Cyclophilin 40; ppiase 69.2 9.2 0.00031 27.8 5.3 68 8-82 284-351 (370)
63 2l6j_A TPR repeat-containing p 69.1 12 0.00042 20.6 6.1 58 7-71 14-71 (111)
64 3rkv_A Putative peptidylprolyl 68.8 7.8 0.00027 23.7 4.2 68 7-81 73-141 (162)
65 2r5s_A Uncharacterized protein 68.4 12 0.00041 23.3 5.2 21 7-27 50-70 (176)
66 3urz_A Uncharacterized protein 67.7 14 0.00048 23.8 5.5 69 7-82 64-132 (208)
67 1w3b_A UDP-N-acetylglucosamine 67.6 12 0.00041 25.9 5.4 32 49-81 351-382 (388)
68 2y4t_A DNAJ homolog subfamily 67.4 12 0.00042 26.1 5.5 74 7-81 104-186 (450)
69 4i17_A Hypothetical protein; T 66.7 17 0.00058 23.2 5.7 67 7-80 17-84 (228)
70 2fbn_A 70 kDa peptidylprolyl i 66.7 21 0.00072 22.4 7.1 75 6-81 47-131 (198)
71 1xnf_A Lipoprotein NLPI; TPR, 66.6 17 0.00057 23.4 5.7 15 9-23 55-69 (275)
72 4i17_A Hypothetical protein; T 66.5 16 0.00056 23.2 5.6 61 7-74 52-112 (228)
73 4eqf_A PEX5-related protein; a 66.4 15 0.00051 25.1 5.7 70 6-82 74-143 (365)
74 1xnf_A Lipoprotein NLPI; TPR, 66.3 8.8 0.0003 24.7 4.3 69 10-82 18-87 (275)
75 1w3b_A UDP-N-acetylglucosamine 65.7 12 0.00042 25.8 5.2 20 5-24 7-26 (388)
76 2ho1_A Type 4 fimbrial biogene 65.2 16 0.00054 23.3 5.4 67 8-80 82-149 (252)
77 2gw1_A Mitochondrial precursor 64.9 12 0.00041 26.5 5.1 68 6-81 15-82 (514)
78 2vq2_A PILW, putative fimbrial 64.6 22 0.00075 21.8 6.6 13 11-23 91-103 (225)
79 3uq3_A Heat shock protein STI1 63.8 10 0.00035 24.0 4.2 68 7-80 183-255 (258)
80 3ro3_A PINS homolog, G-protein 63.5 6.5 0.00022 22.7 2.9 15 8-22 60-74 (164)
81 3mkr_A Coatomer subunit epsilo 63.4 6.9 0.00024 27.2 3.5 22 4-25 6-27 (291)
82 2gw1_A Mitochondrial precursor 63.3 14 0.00049 26.1 5.2 74 7-81 382-458 (514)
83 3cv0_A Peroxisome targeting si 63.3 18 0.00061 23.7 5.4 31 49-80 218-248 (327)
84 2yhc_A BAMD, UPF0169 lipoprote 63.0 12 0.0004 24.4 4.4 57 6-66 13-70 (225)
85 2xpi_A Anaphase-promoting comp 61.6 16 0.00056 26.7 5.4 70 7-83 526-595 (597)
86 2if4_A ATFKBP42; FKBP-like, al 61.2 5.2 0.00018 28.5 2.6 67 8-81 241-307 (338)
87 2e2e_A Formate-dependent nitri 60.2 20 0.00068 21.9 5.0 16 8-23 55-70 (177)
88 2vsy_A XCC0866; transferase, g 59.6 13 0.00046 27.8 4.7 68 8-82 34-101 (568)
89 3mkr_B Coatomer subunit alpha; 58.6 34 0.0012 25.7 6.7 38 46-83 111-151 (320)
90 3qou_A Protein YBBN; thioredox 58.5 17 0.00059 24.8 4.8 51 6-62 126-176 (287)
91 2c2l_A CHIP, carboxy terminus 58.2 29 0.00099 23.6 6.0 67 7-80 14-80 (281)
92 3u3w_A Transcriptional activat 58.0 23 0.0008 23.9 5.4 63 4-66 82-144 (293)
93 3ro2_A PINS homolog, G-protein 57.8 14 0.00049 24.0 4.1 57 6-64 14-70 (338)
94 3qwp_A SET and MYND domain-con 57.3 16 0.00053 27.5 4.8 63 8-73 340-411 (429)
95 1hh8_A P67PHOX, NCF-2, neutrop 54.8 35 0.0012 21.1 7.6 66 7-82 16-81 (213)
96 1am7_A Lysozyme; glycosidase, 54.1 6 0.00021 26.9 1.8 35 34-68 94-128 (158)
97 1fch_A Peroxisomal targeting s 53.9 25 0.00085 23.7 5.0 69 10-82 38-108 (368)
98 2xpi_A Anaphase-promoting comp 53.8 26 0.00088 25.6 5.3 32 49-81 453-484 (597)
99 3fp2_A TPR repeat-containing p 53.4 32 0.0011 24.5 5.7 67 8-81 321-387 (537)
100 2rg8_A Programmed cell death p 52.1 14 0.00047 24.7 3.4 20 45-65 18-37 (165)
101 3qky_A Outer membrane assembly 51.8 24 0.00084 23.0 4.6 59 7-66 158-224 (261)
102 2kat_A Uncharacterized protein 51.5 31 0.0011 19.5 4.9 54 7-66 29-82 (115)
103 2ond_A Cleavage stimulation fa 51.5 34 0.0012 23.2 5.4 29 50-79 182-210 (308)
104 4eqf_A PEX5-related protein; a 51.2 30 0.001 23.5 5.1 31 49-80 259-289 (365)
105 2vsy_A XCC0866; transferase, g 51.2 31 0.0011 25.7 5.5 68 8-82 68-135 (568)
106 3qww_A SET and MYND domain-con 51.0 30 0.001 26.2 5.4 69 3-74 304-381 (433)
107 1ihg_A Cyclophilin 40; ppiase 50.9 28 0.00097 25.2 5.1 74 7-82 233-317 (370)
108 4b0z_A RPN12, 26S proteasome r 50.6 37 0.0013 23.5 5.6 65 3-86 140-204 (229)
109 2pzi_A Probable serine/threoni 50.5 41 0.0014 26.3 6.3 71 4-81 398-476 (681)
110 3fp2_A TPR repeat-containing p 50.3 20 0.0007 25.6 4.2 30 51-81 442-471 (537)
111 1kt0_A FKBP51, 51 kDa FK506-bi 50.0 15 0.00053 27.2 3.6 69 7-82 327-395 (457)
112 3edt_B KLC 2, kinesin light ch 49.3 21 0.00073 22.6 3.8 57 7-66 53-114 (283)
113 4a1s_A PINS, partner of inscut 49.2 18 0.0006 25.0 3.6 59 6-66 57-115 (411)
114 2nsz_A Programmed cell death p 48.3 16 0.00054 23.3 3.0 20 45-65 15-34 (129)
115 1p5q_A FKBP52, FK506-binding p 48.3 32 0.0011 24.2 5.0 75 7-82 157-240 (336)
116 2ond_A Cleavage stimulation fa 47.6 32 0.0011 23.4 4.7 65 10-81 182-250 (308)
117 3sf4_A G-protein-signaling mod 46.7 26 0.00089 23.8 4.1 58 6-65 18-75 (406)
118 3sf4_A G-protein-signaling mod 46.1 28 0.00097 23.5 4.3 58 8-66 238-296 (406)
119 4gyw_A UDP-N-acetylglucosamine 46.0 24 0.00083 28.4 4.4 14 10-23 22-35 (723)
120 1qqe_A Vesicular transport pro 45.8 47 0.0016 22.4 5.4 56 8-65 169-227 (292)
121 4gyw_A UDP-N-acetylglucosamine 45.6 25 0.00086 28.4 4.5 32 49-81 123-154 (723)
122 1ug3_A EIF4GI, eukaryotic prot 45.1 15 0.00052 26.8 2.9 22 44-66 18-40 (339)
123 2qfc_A PLCR protein; TPR, HTH, 44.8 33 0.0011 23.1 4.4 61 4-65 82-143 (293)
124 2v5f_A Prolyl 4-hydroxylase su 44.8 44 0.0015 19.3 6.5 73 6-79 14-87 (104)
125 1qqe_A Vesicular transport pro 44.5 36 0.0012 23.1 4.6 73 8-81 210-283 (292)
126 3l6a_A Eukaryotic translation 44.5 14 0.00049 27.7 2.7 22 44-66 19-40 (364)
127 2nxp_A Transcription initiatio 44.4 40 0.0014 22.2 4.7 48 34-81 51-98 (156)
128 2h6f_A Protein farnesyltransfe 44.2 53 0.0018 24.0 5.8 67 9-82 109-176 (382)
129 1z2z_A Probable tRNA pseudouri 44.1 15 0.00052 28.2 2.8 46 6-59 187-232 (446)
130 3gw4_A Uncharacterized protein 43.8 18 0.00063 22.1 2.8 60 8-68 118-178 (203)
131 3nf1_A KLC 1, kinesin light ch 43.3 21 0.00072 23.2 3.1 58 6-66 36-98 (311)
132 3n71_A Histone lysine methyltr 42.9 80 0.0027 24.2 6.8 67 5-74 317-392 (490)
133 1wao_1 Serine/threonine protei 41.6 50 0.0017 24.7 5.3 13 10-22 19-31 (477)
134 2j4b_A TAF5, transcription ini 41.1 45 0.0015 21.6 4.5 45 34-79 32-76 (138)
135 3gyz_A Chaperone protein IPGC; 40.3 36 0.0012 21.4 3.8 37 45-82 44-80 (151)
136 3ulq_A Response regulator aspa 40.2 30 0.001 24.0 3.7 56 9-65 196-252 (383)
137 4aqn_A Pesticin; toxin, bacter 40.0 17 0.00058 27.9 2.5 22 2-23 311-332 (357)
138 2hr2_A Hypothetical protein; a 39.6 45 0.0015 22.1 4.3 59 8-66 22-86 (159)
139 1kt0_A FKBP51, 51 kDa FK506-bi 39.5 62 0.0021 23.9 5.5 74 7-81 278-360 (457)
140 2pzi_A Probable serine/threoni 39.0 43 0.0015 26.2 4.8 68 7-81 443-510 (681)
141 3eiq_C Programmed cell death p 37.3 24 0.00083 26.6 3.0 21 44-65 224-244 (358)
142 2h6f_A Protein farnesyltransfe 37.1 37 0.0013 24.9 3.9 64 10-80 144-208 (382)
143 2rp4_A Transcription factor P5 36.9 31 0.0011 20.8 2.8 39 40-85 30-69 (76)
144 4g1t_A Interferon-induced prot 36.4 75 0.0026 22.3 5.4 70 9-80 106-180 (472)
145 3qwp_A SET and MYND domain-con 35.8 1.3E+02 0.0043 22.5 6.8 68 4-74 294-370 (429)
146 2ooe_A Cleavage stimulation fa 34.8 65 0.0022 23.6 5.0 38 44-82 398-435 (530)
147 3r8n_T 30S ribosomal protein S 34.6 18 0.00061 22.1 1.6 22 2-23 31-52 (85)
148 2ifu_A Gamma-SNAP; membrane fu 33.5 40 0.0014 23.0 3.4 56 8-64 166-222 (307)
149 4abn_A Tetratricopeptide repea 32.7 62 0.0021 23.9 4.6 67 11-82 235-302 (474)
150 4b4t_P 26S proteasome regulato 32.6 28 0.00095 26.3 2.6 52 9-62 149-202 (445)
151 3op1_A Macrolide-efflux protei 32.2 26 0.00087 25.9 2.3 21 2-22 168-188 (308)
152 4b4t_T 26S proteasome regulato 30.0 87 0.003 22.4 4.9 67 3-86 147-213 (274)
153 2x0k_A Riboflavin biosynthesis 29.8 34 0.0011 25.4 2.7 21 2-22 165-185 (338)
154 4f3v_A ESX-1 secretion system 29.7 55 0.0019 23.6 3.7 54 7-64 145-198 (282)
155 3mkq_B Coatomer subunit alpha; 28.4 1.1E+02 0.0038 20.7 5.0 49 2-61 10-58 (177)
156 2qx5_A Nucleoporin NIC96; mRNA 28.4 28 0.00095 28.4 2.1 26 2-27 543-568 (661)
157 2zu6_B Programmed cell death p 27.2 48 0.0016 24.3 3.0 22 44-66 173-195 (307)
158 2vqe_T 30S ribosomal protein S 26.3 34 0.0012 21.8 1.9 22 2-23 38-59 (106)
159 2cp9_A EF-TS, EF-TSMT, elongat 26.2 40 0.0014 19.5 2.0 14 50-63 35-48 (64)
160 4a18_Q RPL36, 60S ribosomal pr 26.2 55 0.0019 20.9 2.8 46 36-82 50-98 (104)
161 3sxm_A Transcriptional regulat 26.1 57 0.002 19.6 2.9 27 41-67 103-129 (140)
162 1hz4_A MALT regulatory protein 25.7 83 0.0028 21.4 3.9 60 7-67 184-245 (373)
163 4e97_A Lysozyme; hydrolase, al 25.6 37 0.0013 22.8 2.1 18 3-20 139-156 (187)
164 4b4t_Q 26S proteasome regulato 25.5 1.7E+02 0.0057 20.2 6.8 66 4-69 11-87 (434)
165 4b4t_R RPN7, 26S proteasome re 25.5 99 0.0034 23.0 4.6 82 2-85 173-262 (429)
166 3mkq_A Coatomer beta'-subunit; 25.1 1.1E+02 0.0039 23.1 4.9 22 2-23 657-678 (814)
167 2ynq_A ESSB; membrane protein, 24.6 44 0.0015 22.8 2.3 15 47-61 83-97 (161)
168 3iz5_k 60S ribosomal protein L 22.8 36 0.0012 22.0 1.5 33 35-67 51-83 (112)
169 3dwl_G Actin-related protein 2 22.4 46 0.0016 22.5 2.0 28 44-72 43-70 (152)
170 1qsa_A Protein (soluble lytic 22.0 1.2E+02 0.0041 24.2 4.7 55 4-64 292-346 (618)
171 1zbp_A Hypothetical protein VP 21.7 1E+02 0.0034 22.6 3.9 54 1-61 1-55 (273)
172 1gjs_A Immunoglobulin G bindin 21.4 53 0.0018 19.2 1.9 27 37-64 34-60 (65)
173 1vk8_A Hypothetical protein TM 21.4 19 0.00066 22.8 -0.1 15 9-23 58-72 (106)
174 3zsu_A TLL2057 protein, cyanoq 21.2 49 0.0017 21.8 1.9 23 1-23 37-59 (130)
175 3mv2_A Coatomer subunit alpha; 20.2 77 0.0026 23.8 3.0 34 6-47 37-70 (325)
No 1
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.86 E-value=1 Score=26.51 Aligned_cols=69 Identities=14% Similarity=0.020 Sum_probs=30.8
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHH
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEAS 79 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~ 79 (89)
....|+|++|+.++...-..+.++. ....++-..=.=+...|+..+|+..+++-+.- .+.++..+..++
T Consensus 38 ~~~~~~~~~A~~~~~~a~~~~~~~~---~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a 106 (148)
T 2dba_A 38 LFKCGDYGGALAAYTQALGLDATPQ---DQAVLHRNRAACHLKLEDYDKAETEASKAIEK-DGGDVKALYRRS 106 (148)
T ss_dssp HHTTTCHHHHHHHHHHHHTSCCCHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TSCCHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHcccch---HHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh-CccCHHHHHHHH
Confidence 4456777777777766533322210 00111111111123456666666666644332 333444444443
No 2
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=90.57 E-value=0.64 Score=28.50 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=15.9
Q ss_pred cCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 50 KHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 50 ~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
.|+..+|+..+++-|+ +.|.+++....|..+
T Consensus 94 ~~~~~~A~~~~~~al~-l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 94 MREWSKAQRAYEDALQ-VDPSNEEAREGVRNC 124 (126)
T ss_dssp TTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HCcCCHHHHHHHHHh
Confidence 3555666666554433 244555555555444
No 3
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=88.94 E-value=1.4 Score=27.58 Aligned_cols=68 Identities=19% Similarity=0.177 Sum_probs=39.5
Q ss_pred HhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 8 VLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
...|+|++|++++...-.++.++. .+.+.+= . =+...|+..+|+..+++-+. +.+.+++.+..++.++
T Consensus 42 ~~~~~~~~A~~~~~~al~~~p~~~--~a~~~lg-~---~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~la~~~ 109 (150)
T 4ga2_A 42 YEAKEYDLAKKYICTYINVQERDP--KAHRFLG-L---LYELEENTDKAVECYRRSVE-LNPTQKDLVLKIAELL 109 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH-H---HHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHH-H---HHHHcCchHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Confidence 456888888888887644443321 1222221 1 12345777888888775554 3456677777776543
No 4
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=88.59 E-value=1 Score=27.31 Aligned_cols=69 Identities=13% Similarity=0.067 Sum_probs=44.2
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
..+..|+|++|+..+......+.+.. .+.|.+= .- +...|+..+|+..+++-+. +.+.+++.+..++..
T Consensus 26 ~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~lg-~~---~~~~g~~~~A~~~~~~al~-l~P~~~~~~~~la~~ 94 (121)
T 1hxi_A 26 SMLKLANLAEAALAFEAVCQKEPERE--EAWRSLG-LT---QAENEKDGLAIIALNHARM-LDPKDIAVHAALAVS 94 (121)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHHH-HH---HHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCCH--HHHHHHH-HH---HHHcCCHHHHHHHHHHHHH-hCCCCHHHHHHHHHH
Confidence 45678999999999988744443221 2333221 11 3356999999999996554 355667766666544
No 5
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=88.35 E-value=1.9 Score=24.01 Aligned_cols=66 Identities=14% Similarity=0.087 Sum_probs=31.7
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHH
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEAS 79 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~ 79 (89)
....|+|++|+..+......+.++. .+.+.+- + -+...|+..+|+..+++-+.- .+.++..+..++
T Consensus 14 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a-~---~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a 79 (118)
T 1elw_A 14 ALSVGNIDDALQCYSEAIKLDPHNH--VLYSNRS-A---AYAKKGDYQKAYEDGCKTVDL-KPDWGKGYSRKA 79 (118)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH-H---HHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHCCCcH--HHHHHHH-H---HHHhhccHHHHHHHHHHHHHh-CcccHHHHHHHH
Confidence 4457777777777776533322211 1111111 1 123346666676666644432 334455444443
No 6
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=88.34 E-value=2.1 Score=24.76 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=29.0
Q ss_pred HHhcCCHHHHHHHhccccccccccc-ccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcc
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENML-STKTYFELRRQKFLEALDKHERVKALDILMKDIK 65 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~-~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~ 65 (89)
....|+|++|+..+..+.....+.. ...+.|.+-. -+...|+..+|+..+++-+.
T Consensus 12 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~----~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 12 ALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGE----SYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHH----HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHH----HHHHhccHHHHHHHHHHHHH
Confidence 4567888888888776633222221 1012222211 13345777777777775444
No 7
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=87.74 E-value=1.6 Score=26.57 Aligned_cols=67 Identities=15% Similarity=0.066 Sum_probs=36.4
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASL 80 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ 80 (89)
....|+|++|+..+......+.++. .+.+.+ =. =+...|+..+|+.++++-+. +.+.++..+-.++.
T Consensus 28 ~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l-g~---~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~lg~ 94 (142)
T 2xcb_A 28 QYQAGKWDDAQKIFQALCMLDHYDA--RYFLGL-GA---CRQSLGLYEQALQSYSYGAL-MDINEPRFPFHAAE 94 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH-HH---HHHHTTCHHHHHHHHHHHHH-HCTTCTHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHHhCCccH--HHHHHH-HH---HHHHHhhHHHHHHHHHHHHh-cCCCCcHHHHHHHH
Confidence 4567888888888877643332221 122211 11 12345777777777775444 34455555555543
No 8
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=87.48 E-value=0.98 Score=29.60 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=44.2
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehh------------hhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHH
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFE------------LRRQKFLEALDKHERVKALDILMKDIKAFSTYNEE 73 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~Fl------------I~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~ 73 (89)
..+-.|+|++|+..+...-..+.++. .+.|. +..+.=.-+...|+..+|+..+++-++- .+.+++
T Consensus 13 ~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~p~~~~ 89 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTIALNIDRT--EMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK-APNNVD 89 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHH--HHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCh--HHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-CCCCHH
Confidence 45678999999999987643332221 23333 0001122345668888888888865543 446676
Q ss_pred HHHHHHhhh
Q 034603 74 VFKEASLLL 82 (89)
Q Consensus 74 ~~~~l~~ll 82 (89)
.+..++.++
T Consensus 90 ~~~~lg~~~ 98 (208)
T 3urz_A 90 CLEACAEMQ 98 (208)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666665543
No 9
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=85.68 E-value=3.1 Score=24.32 Aligned_cols=68 Identities=9% Similarity=-0.041 Sum_probs=35.9
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
....|+|++|+..+...-..+.++. .+.+.+ =.=+...|+..+|+..+++-+.- .+.++..+..++..
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~----a~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~~ 81 (126)
T 3upv_A 14 YFTKSDWPNAVKAYTEMIKRAPEDA--RGYSNR----AAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATA 81 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCCh--HHHHHH----HHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHH
Confidence 4567888888888776533332221 111111 11233457777777777755443 44556555555443
No 10
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=85.20 E-value=1.8 Score=24.06 Aligned_cols=68 Identities=10% Similarity=-0.026 Sum_probs=42.8
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
....|+|++|..++...-..+.+.. .+.+.+- .=+...|+..+|+..+++-+. +.+.++..+..+..+
T Consensus 48 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~a----~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~ 115 (118)
T 1elw_A 48 YAKKGDYQKAYEDGCKTVDLKPDWG--KGYSRKA----AALEFLNRFEEAKRTYEEGLK-HEANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHHHTTCHHHHHHHHHHHHT-TCTTCHHHHHHHHHH
T ss_pred HHhhccHHHHHHHHHHHHHhCcccH--HHHHHHH----HHHHHHhhHHHHHHHHHHHHH-cCCCCHHHHHHHHHh
Confidence 3457999999999987643332221 1222211 123457999999999986554 355677777776654
No 11
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=84.77 E-value=2.7 Score=26.21 Aligned_cols=17 Identities=12% Similarity=0.294 Sum_probs=10.8
Q ss_pred HhcCCHHHHHHHhcccc
Q 034603 8 VLAGKLDEAEKYLSGFT 24 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~ 24 (89)
...|+|++|+..+....
T Consensus 32 ~~~g~~~~A~~~~~~al 48 (148)
T 2vgx_A 32 YQSGXYEDAHXVFQALC 48 (148)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHH
Confidence 44577777777666553
No 12
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=84.63 E-value=3.5 Score=25.02 Aligned_cols=69 Identities=14% Similarity=0.012 Sum_probs=44.5
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
..-.|+|++|++.....-.++.++. .+.+. + =.=+...|+..+|+..+.+-|. +.+.+++.|..++..+
T Consensus 23 ~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~-~---~~~~~~~~~~~~A~~~~~~al~-~~p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 23 YFKKGDYPTAMRHYNEAVKRDPENA--ILYSN-R---AACLTKLMEFQRALDDCDTCIR-LDSKFIKGYIRKAACL 91 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHH-H---HHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCH--HHHHH-H---hhHHHhhccHHHHHHHHHHHHH-hhhhhhHHHHHHHHHH
Confidence 4568999999999987533332221 12221 1 2223467999999999997665 4556777777776543
No 13
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=84.40 E-value=3.3 Score=22.28 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=43.5
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
....|+|++|+..+...-..+..+. .+.+.+- .=+...|+..+|+..+++-+. +.+.++..+..+..++
T Consensus 19 ~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l~----~~~~~~~~~~~A~~~~~~a~~-~~p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 19 YYKQGDYDEAIEYYQKALELDPNNA--EAWYNLG----NAYYKQGDYDEAIEYYQKALE-LDPNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhcCCCCH--HHHHHHH----HHHHHHhhHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH
Confidence 4568999999999987643332221 1222221 123457899999999996554 4556677777776543
No 14
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=84.23 E-value=2.2 Score=27.34 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=39.7
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
....|+|++|+..+.....++.++.. +.+.+ =.=+...|+..+|+.++++-++ +.+.+++.+..++..
T Consensus 46 ~~~~g~~~eA~~~~~~al~~~P~~~~--~~~~l----g~~~~~~g~~~~Ai~~~~~al~-l~P~~~~~~~~lg~~ 113 (151)
T 3gyz_A 46 FYNKGRIEEAEVFFRFLCIYDFYNVD--YIMGL----AAIYQIKEQFQQAADLYAVAFA-LGKNDYTPVFHTGQC 113 (151)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHH--HHHHH----HHHHHHTTCHHHHHHHHHHHHH-HSSSCCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHH--HHHHH----HHHHHHHccHHHHHHHHHHHHh-hCCCCcHHHHHHHHH
Confidence 34578899999888877544433311 22211 1123355788888888886555 345666666666543
No 15
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=83.80 E-value=4.3 Score=23.10 Aligned_cols=66 Identities=14% Similarity=-0.053 Sum_probs=30.3
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHH
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEAS 79 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~ 79 (89)
....|+|++|+.++...-..+..+. .+.+.+ =.-+...|+..+|+..+++-+.- .+.++..+..++
T Consensus 26 ~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l----a~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la 91 (133)
T 2lni_A 26 CFQKGDYPQAMKHYTEAIKRNPKDA--KLYSNR----AACYTKLLEFQLALKDCEECIQL-EPTFIKGYTRKA 91 (133)
T ss_dssp HHHTTCSHHHHHHHHHHHTTCTTCH--HHHHHH----HHHHTTTTCHHHHHHHHHHHHHH-CTTCHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcH--HHHHHH----HHHHHHhccHHHHHHHHHHHHHh-CCCchHHHHHHH
Confidence 3456777777777766533322111 111111 11123456666666666644432 333444444443
No 16
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=83.42 E-value=4.8 Score=26.16 Aligned_cols=14 Identities=29% Similarity=0.380 Sum_probs=6.6
Q ss_pred cCCHHHHHHHhccc
Q 034603 10 AGKLDEAEKYLSGF 23 (89)
Q Consensus 10 ~G~Wd~a~~~L~~l 23 (89)
.|+|++|+.++...
T Consensus 50 ~~~~~~A~~~~~~a 63 (272)
T 3u4t_A 50 LAKYDLAQKDIETY 63 (272)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHHH
Confidence 44555555444443
No 17
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=83.01 E-value=4.2 Score=25.02 Aligned_cols=68 Identities=6% Similarity=-0.095 Sum_probs=36.8
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
....|+|++|+.++...-.++.++. .+.+.+ = .=+...|+..+|+..+++-+.- .+.++..+..++.+
T Consensus 21 ~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l-~---~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 21 AMARKEYSKAIDLYTQALSIAPANP--IYLSNR-A---AAYSASGQHEKAAEDAELATVV-DPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHH-H---HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCcCH--HHHHHH-H---HHHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 4567888888888876533332221 122211 1 1233457777777777755543 34556655555443
No 18
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=82.86 E-value=5 Score=26.24 Aligned_cols=70 Identities=11% Similarity=-0.043 Sum_probs=46.1
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
.....|++++|+..+...-..+.+.. .+.+.+- .-+...|+..+|+..+++-++ +.+.+++.+..++.++
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg----~~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~ 83 (217)
T 2pl2_A 14 QLYALGRYDAALTLFERALKENPQDP--EALYWLA----RTQLKLGLVNPALENGKTLVA-RTPRYLGGYMVLSEAY 83 (217)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCH--HHHHHHH----HHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHH----HHHHHcCCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHH
Confidence 34668999999999998744443321 2333222 223467999999999996554 4567777777776554
No 19
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=82.84 E-value=4.4 Score=22.52 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=11.1
Q ss_pred HHhcCCHHHHHHHhccc
Q 034603 7 MVLAGKLDEAEKYLSGF 23 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l 23 (89)
....|+|++|++.+...
T Consensus 19 ~~~~~~~~~A~~~~~~~ 35 (125)
T 1na0_A 19 YYKQGDYDEAIEYYQKA 35 (125)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 34567777777776655
No 20
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=82.82 E-value=4.6 Score=22.66 Aligned_cols=17 Identities=6% Similarity=0.130 Sum_probs=10.8
Q ss_pred HHhcCCHHHHHHHhccc
Q 034603 7 MVLAGKLDEAEKYLSGF 23 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l 23 (89)
....|+|++|+.++...
T Consensus 22 ~~~~~~~~~A~~~~~~~ 38 (131)
T 2vyi_A 22 QMKVENFEAAVHFYGKA 38 (131)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHH
Confidence 34567777777766654
No 21
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=82.80 E-value=3.3 Score=25.99 Aligned_cols=17 Identities=12% Similarity=0.262 Sum_probs=9.9
Q ss_pred HHhcCCHHHHHHHhccc
Q 034603 7 MVLAGKLDEAEKYLSGF 23 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l 23 (89)
.+..|+|++|+..+...
T Consensus 16 ~~~~g~~~~A~~~~~~a 32 (176)
T 2r5s_A 16 LLQQGEHAQALNVIQTL 32 (176)
T ss_dssp HHHTTCHHHHHHHHHTS
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 34456666666666554
No 22
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=82.43 E-value=3 Score=27.90 Aligned_cols=72 Identities=10% Similarity=0.121 Sum_probs=38.6
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
.+..|+|++|+..+...-....++. .....++...=.=+...|+..+|+.++++-+.- .+.++..+..++.+
T Consensus 244 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~ 315 (359)
T 3ieg_A 244 LIRDGRYTDATSKYESVMKTEPSVA--EYTVRSKERICHCFSKDEKPVEAIRICSEVLQM-EPDNVNALKDRAEA 315 (359)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCSSH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 4567888888888877633322211 121111111112234567777777777755543 44556666655544
No 23
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=82.26 E-value=3 Score=23.50 Aligned_cols=69 Identities=13% Similarity=0.050 Sum_probs=43.0
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
....|+|++|+.++......+.+.. .+.+.+-. =+...|+..+|+.++.+-+.- .+.++..+..++.+.
T Consensus 56 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~~~~----~~~~~~~~~~A~~~~~~~~~~-~p~~~~~~~~l~~~~ 124 (131)
T 2vyi_A 56 YSKLGNYAGAVQDCERAICIDPAYS--KAYGRMGL----ALSSLNKHVEAVAYYKKALEL-DPDNETYKSNLKIAE 124 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH----HHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHH
T ss_pred HHHhhchHHHHHHHHHHHhcCccCH--HHHHHHHH----HHHHhCCHHHHHHHHHHHHhc-CccchHHHHHHHHHH
Confidence 3568999999999987643332221 12222211 234568999999999865543 446677777665543
No 24
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=81.82 E-value=3.2 Score=23.14 Aligned_cols=69 Identities=16% Similarity=0.210 Sum_probs=43.0
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
....|++++|+.++......+..+. ...+.+- .-+...|+..+|+..+++-+. ..+.++..+..+..+.
T Consensus 53 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~la----~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 53 YYKQGDYDEAIEYYQKALELDPNNA--EAWYNLG----NAYYKQGDYDEAIEYYQKALE-LDPNNAEAKQNLGNAK 121 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccH--HHHHHHH----HHHHHhcCHHHHHHHHHHHHH-hCCCcHHHHHHHHHHH
Confidence 3567999999999987643332221 1222211 113356899999999986544 4556677777776553
No 25
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=81.21 E-value=4.9 Score=23.13 Aligned_cols=69 Identities=7% Similarity=-0.012 Sum_probs=40.6
Q ss_pred HHhcCCHHHHHHHhcccccccccc-cccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENM-LSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASL 80 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~-~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ 80 (89)
....|+|++|+.++...-....+. ....+.|.+-. - +...|+..+|+..+++-++- .+.++....-...
T Consensus 49 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~-~---~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~a~~~ 118 (129)
T 2xev_A 49 YYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL-S---QYGEGKNTEAQQTLQQVATQ-YPGSDAARVAQER 118 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH-H---HHHTTCHHHHHHHHHHHHHH-STTSHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH-H---HHHcCCHHHHHHHHHHHHHH-CCCChHHHHHHHH
Confidence 456899999999998874333222 11123333221 1 23579999999999966554 3455544443333
No 26
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=81.21 E-value=6.6 Score=23.38 Aligned_cols=67 Identities=12% Similarity=0.073 Sum_probs=34.1
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASL 80 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ 80 (89)
....|+|++|+..+......+... . .+.+. .=.-+...|+..+|+..+++-+.- .+.++..+..++.
T Consensus 18 ~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~----~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~a~ 84 (186)
T 3as5_A 18 HAKAGRYSQAVMLLEQVYDADAFD-V-DVALH----LGIAYVKTGAVDRGTELLERSLAD-APDNVKVATVLGL 84 (186)
T ss_dssp HHHHTCHHHHHHHHTTTCCTTSCC-H-HHHHH----HHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCccC-h-HHHHH----HHHHHHHcCCHHHHHHHHHHHHhc-CCCCHHHHHHHHH
Confidence 445688888888887763332221 1 11111 111223457777777777754432 3344555554443
No 27
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=81.21 E-value=6.7 Score=25.89 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=42.5
Q ss_pred HHHhcCCHHHHHHHhcccccccc-cccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccc--cCCCHHHHHHHHh
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHE-NMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAF--STYNEEVFKEASL 80 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~-~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl--~~~~~~~~~~l~~ 80 (89)
..+..|+|++|+..+..+..... +.....+.|.+-.- +...|+..+|+..+++-+.-. ++..++.+-.++.
T Consensus 24 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~----~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~ 97 (261)
T 3qky_A 24 EFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARA----YYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAM 97 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHH----HHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHH----HHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHH
Confidence 45678999999999998744332 22111244433222 345699999999999766632 2233444444433
No 28
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=80.31 E-value=1.4 Score=27.55 Aligned_cols=71 Identities=11% Similarity=0.056 Sum_probs=43.4
Q ss_pred HhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHH-HHhhcccccCCCHHHHHHHHhhhcCC
Q 034603 8 VLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDI-LMKDIKAFSTYNEEVFKEASLLLPLE 85 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~-Lr~eL~pl~~~~~~~~~~l~~lltl~ 85 (89)
...|+|++|+..+...-.++.+.. .+.+.+-. - +...|+..+|... +.+-+ -+.|.++..|+-...++..+
T Consensus 76 ~~~~~~~~A~~~~~~al~~~p~~~--~~~~~la~-~---~~~~~~~~~aa~~~~~~al-~l~P~~~~~~~l~~~ll~~~ 147 (150)
T 4ga2_A 76 ELEENTDKAVECYRRSVELNPTQK--DLVLKIAE-L---LCKNDVTDGRAKYWVERAA-KLFPGSPAVYKLKEQLLDCE 147 (150)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHHH-H---HHHHCSSSSHHHHHHHHHH-HHSTTCHHHHHHHHHHHHTC
T ss_pred HHcCchHHHHHHHHHHHHhCCCCH--HHHHHHHH-H---HHHcCChHHHHHHHHHHHH-HhCcCCHHHHHHHHHHHHHh
Confidence 457999999999987644443332 23332211 1 2345666665554 45333 34567899999999888654
No 29
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=80.09 E-value=5.5 Score=23.15 Aligned_cols=69 Identities=12% Similarity=-0.008 Sum_probs=44.4
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
....|+|++|+.++...-..+... . .+.+.+-. =+...|+..+|+..+++-+. +.+.+++....+..+.
T Consensus 75 ~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~~a~----~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 75 HLKLEDYDKAETEASKAIEKDGGD-V-KALYRRSQ----ALEKLGRLDQAVLDLQRCVS-LEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSCC-H-HHHHHHHH----HHHHHTCHHHHHHHHHHHHH-HCSSCHHHHHHHHHHH
T ss_pred HHHHccHHHHHHHHHHHHhhCccC-H-HHHHHHHH----HHHHcCCHHHHHHHHHHHHH-cCCCcHHHHHHHHHHH
Confidence 456799999999998764333222 1 12222211 13456899999999996655 4557788777776654
No 30
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=80.03 E-value=6.2 Score=22.90 Aligned_cols=69 Identities=12% Similarity=0.012 Sum_probs=36.8
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
.....|+|++|+.++...-..+.++. .+.+.+ = .=+...|+..+|+..+++-+. +.+.++..+..++.+
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~l-~---~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 18 RLFVGRKYPEAAACYGRAITRNPLVA--VYYTNR-A---LCYLKMQQPEQALADCRRALE-LDGQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH-H---HHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHhhCcCcH--HHHHHH-H---HHHHHhcCHHHHHHHHHHHHH-hCchhHHHHHHHHHH
Confidence 34567888888888776533332221 122111 1 112345777777777775544 344556655555543
No 31
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=79.96 E-value=3.4 Score=23.13 Aligned_cols=16 Identities=13% Similarity=0.245 Sum_probs=8.7
Q ss_pred hcCCHHHHHHHHHhhc
Q 034603 49 DKHERVKALDILMKDI 64 (89)
Q Consensus 49 ~~~~~~~AL~~Lr~eL 64 (89)
..|+..+|+..+.+-+
T Consensus 81 ~~~~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKAL 96 (136)
T ss_dssp TTTCHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHH
Confidence 3455666666665433
No 32
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=79.20 E-value=5.9 Score=21.64 Aligned_cols=69 Identities=16% Similarity=0.087 Sum_probs=42.9
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCC--CHHHHHHHHhhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTY--NEEVFKEASLLL 82 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~--~~~~~~~l~~ll 82 (89)
....|+|++|+.++......+.... .+.+.+- .=+...|+..+|+.++++-+.- .+. ++..+..++.+.
T Consensus 16 ~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~~a----~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~~~l~~~~ 86 (112)
T 2kck_A 16 QYDAGNYTESIDLFEKAIQLDPEES--KYWLMKG----KALYNLERYEEAVDCYNYVINV-IEDEYNKDVWAAKADAL 86 (112)
T ss_dssp HHSSCCHHHHHHHHHHHHHHCCCCH--HHHHHHH----HHHHHTTCHHHHHHHHHHHHHT-SCCTTCHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHHhCcCCH--HHHHHHH----HHHHHccCHHHHHHHHHHHHHh-CcccchHHHHHHHHHHH
Confidence 4568999999999987643332221 1222111 1234568999999999866654 445 677777776554
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=79.18 E-value=3.3 Score=27.15 Aligned_cols=66 Identities=18% Similarity=0.089 Sum_probs=37.5
Q ss_pred hcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 9 LAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 9 l~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
..|+|++|+..+...-.++ +. . .+.+.+- .=+...|+..+|+..+++-+. +.+.+++.+..++.++
T Consensus 130 ~~g~~~~A~~~~~~al~~~-~~-~-~~~~~la----~~~~~~g~~~~A~~~~~~al~-~~P~~~~~~~~la~~~ 195 (217)
T 2pl2_A 130 LLGERDKAEASLKQALALE-DT-P-EIRSALA----ELYLSMGRLDEALAQYAKALE-QAPKDLDLRVRYASAL 195 (217)
T ss_dssp HTTCHHHHHHHHHHHHHHC-CC-H-HHHHHHH----HHHHHHTCHHHHHHHHHHHHH-HSTTCHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHhcc-cc-h-HHHHHHH----HHHHHcCCHHHHHHHHHHHHH-hCCCChHHHHHHHHHH
Confidence 4577777777766653333 11 1 1222111 113456888888888886554 3556677777776654
No 34
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=78.99 E-value=5.8 Score=21.98 Aligned_cols=63 Identities=16% Similarity=0.197 Sum_probs=39.1
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccc-eehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHH
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTK-TYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVF 75 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~-~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~ 75 (89)
.....|+|++|+..+...-..+.++. . +.|.+ =+- +...|+..+|+..+++-+.- .+.++..+
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~~l-g~~---~~~~~~~~~A~~~~~~al~~-~p~~~~~~ 72 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPVGK--DEAYYLM-GNA---YRKLGDWQKALNNYQSAIEL-NPDSPALQ 72 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSSTH--HHHHHHH-HHH---HHHHTCHHHHHHHHHHHHHH-CTTSTHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCCcH--HHHHHHH-HHH---HHHcCCHHHHHHHHHHHHhc-CCCcHHHH
Confidence 34678999999999988743332221 1 22222 122 23569999999999976654 44555544
No 35
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=78.90 E-value=6.1 Score=26.12 Aligned_cols=69 Identities=9% Similarity=-0.097 Sum_probs=37.2
Q ss_pred HHHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHh
Q 034603 5 EDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASL 80 (89)
Q Consensus 5 r~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ 80 (89)
+.....|+|++|++++..+-..+..... +.+... .-+...|+..+|+..+++-+. ..+.++..+..++.
T Consensus 30 ~~~~~~g~~~~A~~~~~~~l~~~p~~~~--~~~~~~----~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~l~~ 98 (330)
T 3hym_B 30 ERHYYNCDFKMCYKLTSVVMEKDPFHAS--CLPVHI----GTLVELNKANELFYLSHKLVD-LYPSNPVSWFAVGC 98 (330)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTT--THHHHH----HHHHHHTCHHHHHHHHHHHHH-HCTTSTHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCChh--hHHHHH----HHHHHhhhHHHHHHHHHHHHH-hCcCCHHHHHHHHH
Confidence 3456679999999988876333322211 111111 122455777777777775444 34445555555543
No 36
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=78.65 E-value=3.9 Score=25.41 Aligned_cols=53 Identities=17% Similarity=-0.034 Sum_probs=34.8
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcc
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIK 65 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~ 65 (89)
....|+|++|+..+...-.++.++. .+.|.+- . =+...|+..+|+..+++-+.
T Consensus 65 ~~~~g~~~~A~~~~~~al~l~p~~~--~~~~~lg-~---~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 65 RQAMGQYDLAIHSYSYGAVMDIXEP--RFPFHAA-E---CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHHH-H---HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHhcCCCCc--hHHHHHH-H---HHHHcCCHHHHHHHHHHHHH
Confidence 3467999999999988754443332 2333221 1 23567999999999997554
No 37
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=78.10 E-value=3.9 Score=28.44 Aligned_cols=20 Identities=25% Similarity=0.290 Sum_probs=13.3
Q ss_pred HHhcCCHHHHHHHhcccccc
Q 034603 7 MVLAGKLDEAEKYLSGFTQV 26 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~ 26 (89)
....|++++|++.+......
T Consensus 140 ~~~~g~~~~A~~~l~~~~~~ 159 (291)
T 3mkr_A 140 LLKLDRLDLARKELKKMQDQ 159 (291)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHhh
Confidence 34567888888877776433
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=77.81 E-value=6.6 Score=25.48 Aligned_cols=15 Identities=20% Similarity=0.242 Sum_probs=8.9
Q ss_pred hcCCHHHHHHHhccc
Q 034603 9 LAGKLDEAEKYLSGF 23 (89)
Q Consensus 9 l~G~Wd~a~~~L~~l 23 (89)
..|+|++|+.++...
T Consensus 120 ~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 120 NKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HTTCHHHHHHHHGGG
T ss_pred HccCHHHHHHHHHHH
Confidence 456666666666554
No 39
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=77.56 E-value=4.2 Score=28.58 Aligned_cols=72 Identities=8% Similarity=0.150 Sum_probs=33.7
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHh
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASL 80 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ 80 (89)
-....|+|++|+.++...-....++. .....++...=.=+...|+..+|+..+++-+. +.+.++..+..+..
T Consensus 266 ~~~~~g~~~~A~~~~~~~l~~~p~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-~~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 266 ELIRDGRYTDATSKYESVMKTEPSIA--EYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ-MEPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCCSSH--HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCcch--HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-hCcccHHHHHHHHH
Confidence 34556888888888776533222211 11111111111223345666777776664332 23344554444433
No 40
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=75.78 E-value=8.5 Score=22.01 Aligned_cols=70 Identities=11% Similarity=0.102 Sum_probs=43.0
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhccccc-CCCHHHHHHHHhhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFS-TYNEEVFKEASLLL 82 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~-~~~~~~~~~l~~ll 82 (89)
....|+|++|+..+...-.++.+.. .+.+.+ =+- +...|+..+|+..+++-+.--. ..+.....++..++
T Consensus 17 ~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~l-g~~---~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~l 87 (100)
T 3ma5_A 17 HLKHDNASRALALFEELVETDPDYV--GTYYHL-GKL---YERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDAK 87 (100)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCT--HHHHHH-HHH---HHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHH-HHH---HHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHHH
Confidence 4567999999999998754443321 233322 222 3456999999999997665322 23455566665544
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=75.57 E-value=8.1 Score=24.51 Aligned_cols=67 Identities=9% Similarity=-0.041 Sum_probs=34.8
Q ss_pred HhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 8 VLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
...|+|++|+.++...-..+..+. .+.+.+ =.=+...|+..+|+..+++-+.- .+.++..+..++..
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l----~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~l~~~ 216 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRAPEDA--RGYSNR----AAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATA 216 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcccH--HHHHHH----HHHHHHhCCHHHHHHHHHHHHHh-CHHHHHHHHHHHHH
Confidence 456788888877776533322211 111111 11124557777777777754442 34556555555443
No 42
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=75.41 E-value=10 Score=23.48 Aligned_cols=17 Identities=6% Similarity=0.030 Sum_probs=10.6
Q ss_pred HHhcCCHHHHHHHhccc
Q 034603 7 MVLAGKLDEAEKYLSGF 23 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l 23 (89)
....|+|++|.+++...
T Consensus 18 ~~~~~~~~~A~~~~~~~ 34 (225)
T 2vq2_A 18 YMRGQDYRQATASIEDA 34 (225)
T ss_dssp HHHTTCHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHH
Confidence 34567777777766654
No 43
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=75.29 E-value=6.9 Score=24.10 Aligned_cols=63 Identities=19% Similarity=0.181 Sum_probs=31.4
Q ss_pred hcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHH
Q 034603 9 LAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEA 78 (89)
Q Consensus 9 l~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l 78 (89)
..|+|++|++.+...-.++.+.. .+.+.+- .=+...|+..+|+..+.+-+. ..+.++..+..+
T Consensus 17 ~~g~~~~A~~~~~~al~~~p~~~--~~~~~la----~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~ 79 (184)
T 3vtx_A 17 TKGDFDGAIRAYKKVLKADPNNV--ETLLKLG----KTYMDIGLPNDAIESLKKFVV-LDTTSAEAYYIL 79 (184)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHHHTTCHHHHHHHHHHHHH-HCCCCHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCCH--HHHHHHH----HHHHHCCCHHHHHHHHHHHHh-cCchhHHHHHHH
Confidence 45888888888876533332221 1222211 112345667777776664333 233444444443
No 44
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=75.10 E-value=11 Score=24.81 Aligned_cols=69 Identities=12% Similarity=-0.056 Sum_probs=45.5
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
....|+|++|+.++...-..+.+.. .+.+.+ =.=+...|+..+|+..+++-+. +.+.++..+..++..+
T Consensus 246 ~~~~g~~~~A~~~~~~a~~~~~~~~--~~~~~l----a~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~ 314 (330)
T 3hym_B 246 CRKLKKYAEALDYHRQALVLIPQNA--STYSAI----GYIHSLMGNFENAVDYFHTALG-LRRDDTFSVTMLGHCI 314 (330)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCS--HHHHHH----HHHHHHHTCHHHHHHHHHTTTT-TCSCCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhhCccch--HHHHHH----HHHHHHhccHHHHHHHHHHHHc-cCCCchHHHHHHHHHH
Confidence 3457999999999988644332221 122222 1223456999999999996554 4567788888887755
No 45
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=75.01 E-value=6.4 Score=26.71 Aligned_cols=70 Identities=11% Similarity=0.158 Sum_probs=39.4
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
.....|+|++|+.++......+.+.. .+.+.+- .=+...|+..+|+.++++-+.- .+.++..+..++.++
T Consensus 73 ~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l~----~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~l~~~~ 142 (368)
T 1fch_A 73 RRLQEGDLPNAVLLFEAAVQQDPKHM--EAWQYLG----TTQAENEQELLAISALRRCLEL-KPDNQTALMALAVSF 142 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHSCTTCH--HHHHHHH----HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHH----HHHHHCcCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Confidence 34567888888888877643332221 1222111 1134568888888888855443 445666666665543
No 46
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=74.57 E-value=7.6 Score=24.59 Aligned_cols=69 Identities=14% Similarity=0.038 Sum_probs=43.7
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
....|+|++|+.++...-.++... . .+.|.+ -.. +...|+..+|+..+++-+.- .+.+++.+..+..+.
T Consensus 98 ~~~~~~~~~A~~~~~~al~~~p~~-~-~~~~~l--g~~--~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 98 YNKNKDYPKAIDHASKVLKIDKNN-V-KALYKL--GVA--NMYFGFLEEAKENLYKAASL-NPNNLDIRNSYELCV 166 (198)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTC-H-HHHHHH--HHH--HHHHTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhCccc-H-HHHHHH--HHH--HHHcccHHHHHHHHHHHHHH-CCCcHHHHHHHHHHH
Confidence 346799999999998764443222 1 232222 111 34568999999999965543 456677777766554
No 47
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=74.30 E-value=11 Score=25.07 Aligned_cols=70 Identities=20% Similarity=0.065 Sum_probs=39.4
Q ss_pred HHHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 5 EDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 5 r~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
.-....|+|++|++.+......+..+. .+.+ ..-.=+...|+..+|+..+++-+.- .+.+++.+..++.+
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~~ 197 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKILEVCVWDA--ELRE----LRAECFIKEGEPRKAISDLKAASKL-KSDNTEAFYKISTL 197 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCH--HHHH----HHHHHHHHTTCHHHHHHHHHHHHTT-CSCCHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHhCCCch--HHHH----HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 345567888888888887633322221 1211 1112234567888888888755443 44556666665544
No 48
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=74.23 E-value=6.6 Score=30.13 Aligned_cols=71 Identities=25% Similarity=0.282 Sum_probs=44.2
Q ss_pred hHHHHHhcCCHHHHHH-Hhcccccccccccccceehhhh--------------hhHHHHHHhcCCHHHHHHHHHhhcccc
Q 034603 3 HFEDMVLAGKLDEAEK-YLSGFTQVHENMLSTKTYFELR--------------RQKFLEALDKHERVKALDILMKDIKAF 67 (89)
Q Consensus 3 ~fr~~Vl~G~Wd~a~~-~L~~l~~~~~~~~~~~~~FlI~--------------kQKfLElL~~~~~~~AL~~Lr~eL~pl 67 (89)
.|..++..|++++|++ ++..+.. ......-++|+.. .++|--.++.|+..+|+++.+ ++
T Consensus 605 ~~~~~~~~~~~~~a~~~~l~~i~~--~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~f~~~l~~~~~~~A~~~~~-~~--- 678 (814)
T 3mkq_A 605 EFQTLTLRGEIEEAIENVLPNVEG--KDSLTKIARFLEGQEYYEEALNISPDQDQKFELALKVGQLTLARDLLT-DE--- 678 (814)
T ss_dssp HHHHHHHTTCHHHHHHHTGGGCCC--HHHHHHHHHHHHHTTCHHHHHHHCCCHHHHHHHHHHHTCHHHHHHHHT-TC---
T ss_pred HHhHHHHhCCHHHHHHHHHhcCCc--hHHHHHHHHHHHhCCChHHheecCCCcchheehhhhcCCHHHHHHHHH-hh---
Confidence 5788999999999999 7754420 0001111333322 345666788899999999876 22
Q ss_pred cCCCHHHHHHHHhh
Q 034603 68 STYNEEVFKEASLL 81 (89)
Q Consensus 68 ~~~~~~~~~~l~~l 81 (89)
.++..++.|+.+
T Consensus 679 --~~~~~W~~la~~ 690 (814)
T 3mkq_A 679 --SAEMKWRALGDA 690 (814)
T ss_dssp --CCHHHHHHHHHH
T ss_pred --CcHhHHHHHHHH
Confidence 446666666543
No 49
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=74.12 E-value=7.5 Score=26.73 Aligned_cols=17 Identities=18% Similarity=0.319 Sum_probs=10.8
Q ss_pred HhcCCHHHHHHHhcccc
Q 034603 8 VLAGKLDEAEKYLSGFT 24 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~ 24 (89)
+..|++++|+..+..+.
T Consensus 162 ~~~g~~~~A~~~l~~~~ 178 (287)
T 3qou_A 162 IALNRSEDAEAVLXTIP 178 (287)
T ss_dssp HHTTCHHHHHHHHTTSC
T ss_pred HHCCCHHHHHHHHHhCc
Confidence 44567777776666653
No 50
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=72.83 E-value=11 Score=22.36 Aligned_cols=15 Identities=20% Similarity=0.304 Sum_probs=8.1
Q ss_pred hcCCHHHHHHHhccc
Q 034603 9 LAGKLDEAEKYLSGF 23 (89)
Q Consensus 9 l~G~Wd~a~~~L~~l 23 (89)
..|++++|..++...
T Consensus 54 ~~~~~~~A~~~~~~~ 68 (186)
T 3as5_A 54 KTGAVDRGTELLERS 68 (186)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHH
Confidence 455555555555544
No 51
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=72.59 E-value=11 Score=24.73 Aligned_cols=70 Identities=14% Similarity=0.051 Sum_probs=42.7
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
.....|+|++|+.++......+.+.. .+.+.+ =.-+...|+..+|+..+++-+.- .+.++..+..++.++
T Consensus 30 ~~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l----~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 30 SMLKLANLAEAALAFEAVCQAAPERE--EAWRSL----GLTQAENEKDGLAIIALNHARML-DPKDIAVHAALAVSH 99 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCCH--HHHHHH----HHHHHHcCCHHHHHHHHHHHHhc-CcCCHHHHHHHHHHH
Confidence 45678999999999987643332221 122221 12234568899999999865553 445666666665543
No 52
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=71.21 E-value=10 Score=22.73 Aligned_cols=30 Identities=13% Similarity=0.278 Sum_probs=19.3
Q ss_pred hcCCHHHHHHHHHhhcccccCCCHHHHHHHHh
Q 034603 49 DKHERVKALDILMKDIKAFSTYNEEVFKEASL 80 (89)
Q Consensus 49 ~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ 80 (89)
..|+..+|+...++-|+.. .+|+..+.|..
T Consensus 95 ~~~~~~~A~~~~~kal~~~--~~~~~~~~l~~ 124 (127)
T 4gcn_A 95 KQNDLSLAVQWFHRSLSEF--RDPELVKKVKE 124 (127)
T ss_dssp HTTCHHHHHHHHHHHHHHS--CCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhhC--cCHHHHHHHHH
Confidence 4577888888888766532 35666665543
No 53
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=71.16 E-value=12 Score=23.53 Aligned_cols=13 Identities=15% Similarity=0.169 Sum_probs=6.0
Q ss_pred cCCHHHHHHHhcc
Q 034603 10 AGKLDEAEKYLSG 22 (89)
Q Consensus 10 ~G~Wd~a~~~L~~ 22 (89)
.|+|++|++++..
T Consensus 104 ~~~~~~A~~~~~~ 116 (243)
T 2q7f_A 104 KEMYKEAKDMFEK 116 (243)
T ss_dssp TTCHHHHHHHHHH
T ss_pred hccHHHHHHHHHH
Confidence 3444444444443
No 54
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=70.67 E-value=14 Score=21.80 Aligned_cols=16 Identities=25% Similarity=0.216 Sum_probs=9.0
Q ss_pred HhcCCHHHHHHHhccc
Q 034603 8 VLAGKLDEAEKYLSGF 23 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l 23 (89)
...|+|++|+.++...
T Consensus 24 ~~~~~~~~A~~~~~~a 39 (166)
T 1a17_A 24 FKAKDYENAIKFYSQA 39 (166)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHH
Confidence 3456666666655544
No 55
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=70.26 E-value=13 Score=22.71 Aligned_cols=32 Identities=19% Similarity=0.147 Sum_probs=18.0
Q ss_pred hcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 49 DKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 49 ~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
..|+..+|+..+++-+.- .+.+++.+..++.+
T Consensus 119 ~~g~~~~A~~~~~~~l~~-~p~~~~~~~~lg~~ 150 (184)
T 3vtx_A 119 SMGEHDKAIEAYEKTISI-KPGFIRAYQSIGLA 150 (184)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HhCCchhHHHHHHHHHHh-cchhhhHHHHHHHH
Confidence 346667777777654432 34556655555444
No 56
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=70.20 E-value=18 Score=23.04 Aligned_cols=14 Identities=21% Similarity=0.142 Sum_probs=6.7
Q ss_pred cCCHHHHHHHhccc
Q 034603 10 AGKLDEAEKYLSGF 23 (89)
Q Consensus 10 ~G~Wd~a~~~L~~l 23 (89)
.|+|++|++++...
T Consensus 118 ~g~~~~A~~~~~~~ 131 (252)
T 2ho1_A 118 QKRYEEAYQRLLEA 131 (252)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHH
Confidence 45555555544443
No 57
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=69.71 E-value=9.3 Score=21.37 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=34.1
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhccc
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKA 66 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~p 66 (89)
.....|+|++|+.++...-..+.... .+.+.+- .=+...|+..+|+..+++-+.-
T Consensus 13 ~~~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~la----~~~~~~~~~~~A~~~~~~~~~~ 67 (131)
T 1elr_A 13 DAYKKKDFDTALKHYDKAKELDPTNM--TYITNQA----AVYFEKGDYNKCRELCEKAIEV 67 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcCCccH--HHHHHHH----HHHHHhccHHHHHHHHHHHHhh
Confidence 34568999999999987643332221 1222211 1234579999999999865543
No 58
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=69.48 E-value=3.3 Score=27.57 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=17.4
Q ss_pred HHHHhcCCHHHHHHHHHhhcc
Q 034603 45 LEALDKHERVKALDILMKDIK 65 (89)
Q Consensus 45 LElL~~~~~~~AL~~Lr~eL~ 65 (89)
=|++..||+.+|..|++ ||.
T Consensus 17 ~EY~~~~D~~EA~~cl~-EL~ 36 (152)
T 2ion_A 17 KEYLLSGDISEAEHCLK-ELE 36 (152)
T ss_dssp HHHHHHCCHHHHHHHHH-HHT
T ss_pred HHHHhCCCHHHHHHHHH-HhC
Confidence 47888899999999999 675
No 59
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=69.35 E-value=10 Score=23.92 Aligned_cols=67 Identities=16% Similarity=0.162 Sum_probs=33.4
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASL 80 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ 80 (89)
....|+|++|+.++........... .+.+.+- .-+...|+..+|+.++++-+.- .+.++..+..++.
T Consensus 135 ~~~~~~~~~A~~~~~~~~~~~~~~~--~~~~~l~----~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~la~ 201 (243)
T 2q7f_A 135 LVKLEQPKLALPYLQRAVELNENDT--EARFQFG----MCLANEGMLDEALSQFAAVTEQ-DPGHADAFYNAGV 201 (243)
T ss_dssp HHHTSCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHHHHTCCHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCccH--HHHHHHH----HHHHHcCCHHHHHHHHHHHHHh-CcccHHHHHHHHH
Confidence 3456888888888776533222111 1111111 1123456777777777644432 3344555555443
No 60
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=69.29 E-value=11 Score=21.91 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=37.0
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHH
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEV 74 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~ 74 (89)
....|+|++|+.++......+.+.. .+.+.+- .=+...|+..+|+..+++-+..- +.+++.
T Consensus 37 ~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l~----~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 97 (117)
T 3k9i_A 37 FRTLGEYRKAEAVLANGVKQFPNHQ--ALRVFYA----MVLYNLGRYEQGVELLLKIIAET-SDDETI 97 (117)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHHHHTCHHHHHHHHHHHHHHH-CCCHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCch--HHHHHHH----HHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence 3457999999999887644432221 2333221 12345689999999998776653 344543
No 61
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=69.27 E-value=7.6 Score=27.53 Aligned_cols=69 Identities=10% Similarity=-0.030 Sum_probs=44.9
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
....|+|++|+.++...-.++.+.. .+.|.+- . =+...|+..+|+..+++-+. +.+.++..+..+..+.
T Consensus 206 ~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg--~--~~~~~g~~~~A~~~~~~al~-l~P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 206 HLKLQAFSAAIESCNKALELDSNNE--KGLSRRG--E--AHLAVNDFELARADFQKVLQ-LYPNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH--H--HHHHTTCHHHHHHHHHHHHH-HCSSCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcH--HHHHHHH--H--HHHHCCCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHH
Confidence 3467999999999988744443221 2333221 1 23456999999999997655 3556777777776553
No 62
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=69.24 E-value=9.2 Score=27.83 Aligned_cols=68 Identities=12% Similarity=0.024 Sum_probs=44.4
Q ss_pred HhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 8 VLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
...|+|++|++++...-.++.+. . ++.|.+- . =+...|+..+|+..+++-+. +.+.+++....+..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~-~-~a~~~lg--~--~~~~~g~~~eA~~~l~~Al~-l~P~~~~~~~~l~~~~ 351 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSN-T-KALYRRA--Q--GWQGLKEYDQALADLKKAQE-IAPEDKAIQAELLKVK 351 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTC-H-HHHHHHH--H--HHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchh-H-HHHHHHH--H--HHHHccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHH
Confidence 45799999999998764444222 1 2333222 1 13456899999999996554 3556787777776654
No 63
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=69.08 E-value=12 Score=20.59 Aligned_cols=58 Identities=10% Similarity=0.129 Sum_probs=36.5
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCC
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYN 71 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~ 71 (89)
....|+|++|+..+...-..+.++. .+.+.+ =.=+...|+..+|+..+++-+.- .+.+
T Consensus 14 ~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l----g~~~~~~g~~~~A~~~~~~al~~-~p~~ 71 (111)
T 2l6j_A 14 LFKQGLYREAVHCYDQLITAQPQNP--VGYSNK----AMALIKLGEYTQAIQMCQQGLRY-TSTA 71 (111)
T ss_dssp HHTTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHHHTTCHHHHHHHHHHHHTS-CSST
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCCH--HHHHHH----HHHHHHhcCHHHHHHHHHHHHHh-CCCc
Confidence 4568999999999987643332221 122221 12235679999999999976654 3344
No 64
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=68.83 E-value=7.8 Score=23.70 Aligned_cols=68 Identities=21% Similarity=0.150 Sum_probs=41.9
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCH-HHHHHHHhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNE-EVFKEASLL 81 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~-~~~~~l~~l 81 (89)
....|+|++|+..+...-.++.+.. ++.|.+ -.. +...|+..+|+..+++-+.- .+.++ .....+..+
T Consensus 73 ~~~~~~~~~A~~~~~~al~~~p~~~--~a~~~~--g~~--~~~~g~~~~A~~~~~~al~l-~p~~~~~~~~~l~~~ 141 (162)
T 3rkv_A 73 YLNIGDLHEAEETSSEVLKREETNE--KALFRR--AKA--RIAAWKLDEAEEDLKLLLRN-HPAAASVVAREMKIV 141 (162)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCH--HHHHHH--HHH--HHHTTCHHHHHHHHHHHHHH-CGGGHHHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHhcCCcch--HHHHHH--HHH--HHHHhcHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Confidence 3457999999999987644443321 233322 222 34569999999999965554 44555 555555544
No 65
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=68.43 E-value=12 Score=23.25 Aligned_cols=21 Identities=10% Similarity=0.151 Sum_probs=16.4
Q ss_pred HHhcCCHHHHHHHhccccccc
Q 034603 7 MVLAGKLDEAEKYLSGFTQVH 27 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~ 27 (89)
.+..|+|++|+..+......+
T Consensus 50 ~~~~g~~~~A~~~~~~a~~~~ 70 (176)
T 2r5s_A 50 LLETKQFELAQELLATIPLEY 70 (176)
T ss_dssp HHHTTCHHHHHHHHTTCCGGG
T ss_pred HHHCCCHHHHHHHHHHhhhcc
Confidence 456899999999999874433
No 66
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=67.69 E-value=14 Score=23.80 Aligned_cols=69 Identities=12% Similarity=0.003 Sum_probs=44.8
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
....|++++|+..+...-.++.++. .+.+.+= . =+...|+..+|+.++++-+. +.+.+++.+..++.++
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg-~---~~~~~g~~~~A~~~~~~al~-~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKAPNNV--DCLEACA-E---MQVCRGQEKDALRMYEKILQ-LEADNLAANIFLGNYY 132 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH-H---HHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHCCCCH--HHHHHHH-H---HHHHcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHHHH
Confidence 3467999999999988644443331 1222221 1 13456999999999996655 4667788777776543
No 67
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=67.58 E-value=12 Score=25.88 Aligned_cols=32 Identities=13% Similarity=0.103 Sum_probs=16.6
Q ss_pred hcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 49 DKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 49 ~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
..|+..+|+..+++-+. +.+.+++.+..+..+
T Consensus 351 ~~g~~~~A~~~~~~a~~-~~p~~~~a~~~lg~~ 382 (388)
T 1w3b_A 351 QQGKLQEALMHYKEAIR-ISPTFADAYSNMGNT 382 (388)
T ss_dssp TTTCCHHHHHHHHHHHT-TCTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHh-hCCCCHHHHHhHHHH
Confidence 34566666666664433 334455555555443
No 68
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=67.40 E-value=12 Score=26.14 Aligned_cols=74 Identities=20% Similarity=0.238 Sum_probs=40.5
Q ss_pred HHhcCCHHHHHHHhcccccccccccc-cceehhh--------hhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHH
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLS-TKTYFEL--------RRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKE 77 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~-~~~~FlI--------~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~ 77 (89)
....|++++|+.++......+.+... ..+.+.+ .-..=.-+...|+..+|+.++++-+. ..+.++..+..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILE-VCVWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-HCTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-hCCCChHHHHH
Confidence 34578888888888776433322210 0011111 11111225567889999998886543 34456666666
Q ss_pred HHhh
Q 034603 78 ASLL 81 (89)
Q Consensus 78 l~~l 81 (89)
++.+
T Consensus 183 l~~~ 186 (450)
T 2y4t_A 183 RAEC 186 (450)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5543
No 69
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=66.75 E-value=17 Score=23.18 Aligned_cols=67 Identities=16% Similarity=0.016 Sum_probs=31.2
Q ss_pred HHhcCCHHHHHHHhcccccccc-cccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHE-NMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASL 80 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~-~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ 80 (89)
....|+|++|+..+...-.++. .+ . .+.|. + =.-+...|+..+|+..+++-+. +.+.++..+..++.
T Consensus 17 ~~~~~~~~~A~~~~~~al~~~~~~~-~-~~~~~-~---~~~~~~~~~~~~A~~~~~~al~-~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 17 ALNAKNYAVAFEKYSEYLKLTNNQD-S-VTAYN-C---GVCADNIKKYKEAADYFDIAIK-KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTTTCC-H-HHHHH-H---HHHHHHTTCHHHHHHHHHHHHH-TTCSHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHhccCCCC-c-HHHHH-H---HHHHHHhhcHHHHHHHHHHHHH-hCcchHHHHHHHHH
Confidence 3456777777777766533332 11 1 12222 1 1122334666666666664443 23334444444443
No 70
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=66.68 E-value=21 Score=22.41 Aligned_cols=75 Identities=11% Similarity=0.007 Sum_probs=43.3
Q ss_pred HHHhcCCHHHHHHHhccccccccccc--ccc--------eehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHH
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENML--STK--------TYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVF 75 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~--~~~--------~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~ 75 (89)
.....|+|++|+.++...-....... ... +...++-..=.=++..|+..+|+..+++-+.- .+.++..+
T Consensus 47 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~-~p~~~~~~ 125 (198)
T 2fbn_A 47 EFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI-DKNNVKAL 125 (198)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh-CcccHHHH
Confidence 34568999999999987633221111 000 00112222222345679999999999976654 45666666
Q ss_pred HHHHhh
Q 034603 76 KEASLL 81 (89)
Q Consensus 76 ~~l~~l 81 (89)
-.++..
T Consensus 126 ~~lg~~ 131 (198)
T 2fbn_A 126 YKLGVA 131 (198)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666543
No 71
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=66.61 E-value=17 Score=23.38 Aligned_cols=15 Identities=20% Similarity=-0.051 Sum_probs=8.5
Q ss_pred hcCCHHHHHHHhccc
Q 034603 9 LAGKLDEAEKYLSGF 23 (89)
Q Consensus 9 l~G~Wd~a~~~L~~l 23 (89)
..|+|++|+.++...
T Consensus 55 ~~~~~~~A~~~~~~a 69 (275)
T 1xnf_A 55 SLGLRALARNDFSQA 69 (275)
T ss_dssp HTTCHHHHHHHHHHH
T ss_pred HcccHHHHHHHHHHH
Confidence 346666666655544
No 72
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=66.48 E-value=16 Score=23.25 Aligned_cols=61 Identities=20% Similarity=0.154 Sum_probs=38.2
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHH
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEV 74 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~ 74 (89)
....|+|++|+.++...-..+.+.. .+.+.+ =.=+...|+..+|+.++++-+.- .+.++..
T Consensus 52 ~~~~~~~~~A~~~~~~al~~~p~~~--~~~~~l----~~~~~~~~~~~~A~~~~~~al~~-~p~~~~~ 112 (228)
T 4i17_A 52 ADNIKKYKEAADYFDIAIKKNYNLA--NAYIGK----SAAYRDMKNNQEYIATLTEGIKA-VPGNATI 112 (228)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTCSHH--HHHHHH----HHHHHHTTCHHHHHHHHHHHHHH-STTCHHH
T ss_pred HHHhhcHHHHHHHHHHHHHhCcchH--HHHHHH----HHHHHHcccHHHHHHHHHHHHHH-CCCcHHH
Confidence 3457999999999987643332221 122211 11235669999999999976654 4466743
No 73
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=66.43 E-value=15 Score=25.11 Aligned_cols=70 Identities=9% Similarity=0.097 Sum_probs=42.8
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
.....|++++|+.++...-..+.+.. .+.+.+- .=+...|+..+|+.++++-+. +.+.++..+..++.++
T Consensus 74 ~~~~~g~~~~A~~~~~~al~~~p~~~--~~~~~lg----~~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~~ 143 (365)
T 4eqf_A 74 KRLKEGDLPVTILFMEAAILQDPGDA--EAWQFLG----ITQAENENEQAAIVALQRCLE-LQPNNLKALMALAVSY 143 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcCCH--HHHHHHH----HHHHHCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHHH
Confidence 45567999999999987643332221 1222111 123356889999999986554 3456677777776544
No 74
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=66.27 E-value=8.8 Score=24.74 Aligned_cols=69 Identities=10% Similarity=-0.061 Sum_probs=39.2
Q ss_pred cCCHHHHHHHhcccccccc-cccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 10 AGKLDEAEKYLSGFTQVHE-NMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 10 ~G~Wd~a~~~L~~l~~~~~-~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
+|++++|++.+........ ++.. ...++-..=.-+...|+..+|+..+++-+.- .+.++..+..++.++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~la~~~ 87 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDE---RAQLLYERGVLYDSLGLRALARNDFSQALAI-RPDMPEVFNYLGIYL 87 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCch---hHHHHHHHHHHHHHcccHHHHHHHHHHHHHc-CCCcHHHHHHHHHHH
Confidence 5899999999987633211 1101 1112222222344668888888888865543 445666666665543
No 75
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=65.72 E-value=12 Score=25.84 Aligned_cols=20 Identities=20% Similarity=0.180 Sum_probs=14.9
Q ss_pred HHHHhcCCHHHHHHHhcccc
Q 034603 5 EDMVLAGKLDEAEKYLSGFT 24 (89)
Q Consensus 5 r~~Vl~G~Wd~a~~~L~~l~ 24 (89)
+.....|+|++|+..+..+.
T Consensus 7 ~~~~~~g~~~~A~~~~~~~~ 26 (388)
T 1w3b_A 7 HREYQAGDFEAAERHCMQLW 26 (388)
T ss_dssp HHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 45567888888888887653
No 76
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=65.25 E-value=16 Score=23.34 Aligned_cols=67 Identities=9% Similarity=-0.013 Sum_probs=33.3
Q ss_pred HhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcc-cccCCCHHHHHHHHh
Q 034603 8 VLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIK-AFSTYNEEVFKEASL 80 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~-pl~~~~~~~~~~l~~ 80 (89)
...|+|++|++++...-..+.... .+.+.+ -.=+...|+..+|+.++++-+. |..+.++..+..++.
T Consensus 82 ~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~l----a~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~ 149 (252)
T 2ho1_A 82 QTEMEPKLADEEYRKALASDSRNA--RVLNNY----GGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGL 149 (252)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH--HHHHHH----HHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHCcCcH--HHHHHH----HHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHH
Confidence 456788888887776533222111 121111 1112346777777777776555 122233444444433
No 77
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=64.92 E-value=12 Score=26.47 Aligned_cols=68 Identities=16% Similarity=0.184 Sum_probs=39.9
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
.....|+|++|+..+...-..+.+ . .+.+.+ =. -++..|+..+|+.++++-+. +.+.++..+..++..
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~p~--~-~~~~~l-a~---~~~~~g~~~~A~~~~~~al~-~~p~~~~~~~~l~~~ 82 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELKED--P-VFYSNL-SA---CYVSVGDLKKVVEMSTKALE-LKPDYSKVLLRRASA 82 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHCCC--H-HHHHHH-HH---HHHHHTCHHHHHHHHHHHHH-HCSCCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcc--H-HHHHhH-HH---HHHHHhhHHHHHHHHHHHhc-cChHHHHHHHHHHHH
Confidence 456678999999888876433321 1 222222 12 23346888888888885554 345666665555443
No 78
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=64.58 E-value=22 Score=21.84 Aligned_cols=13 Identities=15% Similarity=0.250 Sum_probs=6.7
Q ss_pred CCHHHHHHHhccc
Q 034603 11 GKLDEAEKYLSGF 23 (89)
Q Consensus 11 G~Wd~a~~~L~~l 23 (89)
|+|++|+.++...
T Consensus 91 ~~~~~A~~~~~~~ 103 (225)
T 2vq2_A 91 NRPAESMAYFDKA 103 (225)
T ss_dssp CCHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHH
Confidence 5555555555443
No 79
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=63.84 E-value=10 Score=23.97 Aligned_cols=68 Identities=13% Similarity=0.061 Sum_probs=41.6
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhccccc-----CCCHHHHHHHHh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFS-----TYNEEVFKEASL 80 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~-----~~~~~~~~~l~~ 80 (89)
.+..|+|++|+.++...-..+.+.. .+.+. + -.=+...|+..+|+..+++-+.--. +.+++....+..
T Consensus 183 ~~~~~~~~~A~~~~~~al~~~~~~~--~~~~~-l---~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 183 LAKLMSFPEAIADCNKAIEKDPNFV--RAYIR-K---ATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCH--HHHHH-H---HHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCHHHH--HHHHH-H---HHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 4567999999999987643332221 12221 1 1123356999999999997665431 455666666554
No 80
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=63.49 E-value=6.5 Score=22.70 Aligned_cols=15 Identities=20% Similarity=0.598 Sum_probs=8.2
Q ss_pred HhcCCHHHHHHHhcc
Q 034603 8 VLAGKLDEAEKYLSG 22 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~ 22 (89)
...|++++|+.++..
T Consensus 60 ~~~g~~~~A~~~~~~ 74 (164)
T 3ro3_A 60 IFLGEFETASEYYKK 74 (164)
T ss_dssp HHTTCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHH
Confidence 345566666655554
No 81
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=63.45 E-value=6.9 Score=27.16 Aligned_cols=22 Identities=5% Similarity=0.083 Sum_probs=14.2
Q ss_pred HHHHHhcCCHHHHHHHhccccc
Q 034603 4 FEDMVLAGKLDEAEKYLSGFTQ 25 (89)
Q Consensus 4 fr~~Vl~G~Wd~a~~~L~~l~~ 25 (89)
.|++.-.|+..+|+..++.+..
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~ 27 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKP 27 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHhccc
Confidence 4666667777777777665533
No 82
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=63.33 E-value=14 Score=26.09 Aligned_cols=74 Identities=12% Similarity=-0.002 Sum_probs=36.6
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHh---cCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALD---KHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~---~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
....|+|++|+.++..................++-..-.-+.. .|+..+|+..+++-+.. .+.++..+..++.+
T Consensus 382 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~la~~ 458 (514)
T 2gw1_A 382 LTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKL-DPRSEQAKIGLAQM 458 (514)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHh-CcccHHHHHHHHHH
Confidence 3456788888887776532221111100111122222222334 67777888877755443 34556655555544
No 83
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=63.26 E-value=18 Score=23.74 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=16.8
Q ss_pred hcCCHHHHHHHHHhhcccccCCCHHHHHHHHh
Q 034603 49 DKHERVKALDILMKDIKAFSTYNEEVFKEASL 80 (89)
Q Consensus 49 ~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ 80 (89)
..|+..+|+.++++-+. ..+.++..+..++.
T Consensus 218 ~~~~~~~A~~~~~~a~~-~~~~~~~~~~~l~~ 248 (327)
T 3cv0_A 218 NGNRPQEALDAYNRALD-INPGYVRVMYNMAV 248 (327)
T ss_dssp HTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-cCCCCHHHHHHHHH
Confidence 35667777777764443 23344555555443
No 84
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=62.99 E-value=12 Score=24.40 Aligned_cols=57 Identities=12% Similarity=0.053 Sum_probs=37.2
Q ss_pred HHHhcCCHHHHHHHhcccccc-cccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhccc
Q 034603 6 DMVLAGKLDEAEKYLSGFTQV-HENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKA 66 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~-~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~p 66 (89)
..+..|+|++|+..+..+... +++.....+.|.+-. -+...|+..+|+..+++=++-
T Consensus 13 ~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~----~~~~~~~~~~A~~~~~~~l~~ 70 (225)
T 2yhc_A 13 QKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIY----AYYKNADLPLAQAAIDRFIRL 70 (225)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH----HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH----HHHhcCCHHHHHHHHHHHHHH
Confidence 456789999999999987433 222222124444322 234579999999999976553
No 85
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=61.55 E-value=16 Score=26.66 Aligned_cols=70 Identities=14% Similarity=-0.068 Sum_probs=46.6
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhhc
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLLP 83 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~llt 83 (89)
....|++++|++++...-..+..+. .+.+.+-. - +...|+..+|...+++-+. +.+.+++.+..++.++.
T Consensus 526 ~~~~g~~~~A~~~~~~~~~~~p~~~--~~~~~l~~-~---~~~~g~~~~A~~~~~~~l~-~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 526 YRKLKMYDAAIDALNQGLLLSTNDA--NVHTAIAL-V---YLHKKIPGLAITHLHESLA-ISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSSCCH--HHHHHHHH-H---HHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHHHTTC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCCh--HHHHHHHH-H---HHHhCCHHHHHHHHHHHHh-cCCCChHHHHHHHHHHh
Confidence 3467999999999988643332221 12222221 1 3457999999999996554 56688888888887654
No 86
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=61.18 E-value=5.2 Score=28.49 Aligned_cols=67 Identities=18% Similarity=0.084 Sum_probs=34.0
Q ss_pred HhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 8 VLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
...|+|++|+.++...-.++.+.. ++.|.+-. =+...|+..+|+..+++-+.- .+.+++.+..+..+
T Consensus 241 ~~~g~~~~A~~~~~~al~~~p~~~--~a~~~lg~----a~~~~g~~~~A~~~l~~al~l-~p~~~~a~~~L~~l 307 (338)
T 2if4_A 241 IKLKRYDEAIGHCNIVLTEEEKNP--KALFRRGK----AKAELGQMDSARDDFRKAQKY-APDDKAIRRELRAL 307 (338)
T ss_dssp HTTTCCHHHHHHHHHHHHHCTTCH--HHHHHHHH----HHHTTTCHHHHHHHHHHTTC----------------
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCH--HHHHHHHH----HHHHcCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHH
Confidence 457999999999987643332221 23332221 245679999999999976543 44566666666554
No 87
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=60.17 E-value=20 Score=21.90 Aligned_cols=16 Identities=0% Similarity=-0.128 Sum_probs=10.5
Q ss_pred HhcCCHHHHHHHhccc
Q 034603 8 VLAGKLDEAEKYLSGF 23 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l 23 (89)
...|+|++|+.++...
T Consensus 55 ~~~~~~~~A~~~~~~a 70 (177)
T 2e2e_A 55 LWQNDYSNSLLAYRQA 70 (177)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH
Confidence 3467777777776655
No 88
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=59.61 E-value=13 Score=27.76 Aligned_cols=68 Identities=12% Similarity=0.032 Sum_probs=35.4
Q ss_pred HhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 8 VLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
...|+|++|++++...-..+.+.. .+.+.+ =+- +...|+..+|+..+++-++- .+.+++.+..++.++
T Consensus 34 ~~~g~~~~A~~~~~~al~~~p~~~--~~~~~l-g~~---~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 34 LGMGDTTAGEMAVQRGLALHPGHP--EAVARL-GRV---RWTQQRHAEAAVLLQQASDA-APEHPGIALWLGHAL 101 (568)
T ss_dssp HHHTCHHHHHHHHHHHHTTSTTCH--HHHHHH-HHH---HHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCH--HHHHHH-HHH---HHHCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHHH
Confidence 445777777777766533332221 122111 111 23457777777777755543 445566666665543
No 89
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=58.60 E-value=34 Score=25.65 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=25.9
Q ss_pred HHHhcCCHHHHHHHHHhhcccc---cCCCHHHHHHHHhhhc
Q 034603 46 EALDKHERVKALDILMKDIKAF---STYNEEVFKEASLLLP 83 (89)
Q Consensus 46 ElL~~~~~~~AL~~Lr~eL~pl---~~~~~~~~~~l~~llt 83 (89)
-+...|+..+|+.+.|+-|--+ ..++++...++..+++
T Consensus 111 k~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~ 151 (320)
T 3mkr_B 111 QLTTVGKFEEAVEKFRSILLSVPLLVVDNKQEIAEAQQLIT 151 (320)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHGGGCCCCSHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHHhhheeeccHHHHHHHHHHHH
Confidence 3456799999999999766543 2456666667655554
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=58.51 E-value=17 Score=24.83 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=31.6
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHh
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMK 62 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~ 62 (89)
.+...|++++|+..+...-..+.+.. .+.+.+-. -++..|+..+|+..+++
T Consensus 126 ~~~~~g~~~~A~~~~~~al~~~P~~~--~a~~~la~----~~~~~g~~~~A~~~l~~ 176 (287)
T 3qou_A 126 QLMQESNYTDALPLLXDAWQLSNQNG--EIGLLLAE----TLIALNRSEDAEAVLXT 176 (287)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHTTSCH--HHHHHHHH----HHHHTTCHHHHHHHHTT
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcch--hHHHHHHH----HHHHCCCHHHHHHHHHh
Confidence 34678999999999998643332221 24333321 24456777777777774
No 91
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=58.16 E-value=29 Score=23.63 Aligned_cols=67 Identities=12% Similarity=-0.006 Sum_probs=35.7
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASL 80 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ 80 (89)
....|+|++|+.++...-..+.++. .+.+ -+=.- +...|+..+|+..+++-+.- .+.+...+..++.
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~p~~~--~~~~-~la~~---~~~~~~~~~A~~~~~~al~~-~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITRNPLVA--VYYT-NRALC---YLKMQQPEQALADCRRALEL-DGQSVKAHFFLGQ 80 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCSCCH--HHHH-HHHHH---HHHTTCHHHHHHHHHHHTTS-CTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCccH--HHHH-HHHHH---HHHhcCHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 3457888888888776533332221 1111 11111 23457777888777765543 4455655555544
No 92
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=58.00 E-value=23 Score=23.85 Aligned_cols=63 Identities=10% Similarity=-0.048 Sum_probs=36.3
Q ss_pred HHHHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhccc
Q 034603 4 FEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKA 66 (89)
Q Consensus 4 fr~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~p 66 (89)
....+-.|+|++|++++......................--.=+...|+..+|+..+++-+..
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~ 144 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQ 144 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH
Confidence 456678899999999998763322211110000111110111134567899999999988763
No 93
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=57.77 E-value=14 Score=23.95 Aligned_cols=57 Identities=19% Similarity=0.171 Sum_probs=31.5
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhc
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDI 64 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL 64 (89)
.....|+|++|+.++...-..+..+.. ..-.++-..=.-+...|+..+|+..+++-+
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVGTEDLK--TLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCcccHH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 356789999999999876333322211 111122222222345677777777776544
No 94
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=57.32 E-value=16 Score=27.54 Aligned_cols=63 Identities=14% Similarity=-0.005 Sum_probs=33.6
Q ss_pred HhcCCHHHHHHHhccc-----ccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccc----cCCCHH
Q 034603 8 VLAGKLDEAEKYLSGF-----TQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAF----STYNEE 73 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l-----~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl----~~~~~~ 73 (89)
.-.|+|++|+.+.... ..+..+...+...+.=+=. + +...|+..+|+..+++-++.+ ++++|.
T Consensus 340 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~--~-~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~ 411 (429)
T 3qwp_A 340 INLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGK--L-QLHQGMFPQAMKNLRLAFDIMRVTHGREHSL 411 (429)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH--H-HHHTTCHHHHHHHHHHHHHHHHHHTCTTSHH
T ss_pred HhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHH--H-HHhcCCHHHHHHHHHHHHHHHHHhcCCCChH
Confidence 4579999999998754 1223222221111111111 1 234677777777777666653 455554
No 95
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=54.80 E-value=35 Score=21.12 Aligned_cols=66 Identities=9% Similarity=-0.034 Sum_probs=42.6
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
....|+|++|+..+.... +.+ . . ++-..=.-+...|+..+|+..+++-+.- .+.++..+..++.++
T Consensus 16 ~~~~~~~~~A~~~~~~a~--~~~--~-~----~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 16 AADKKDWKGALDAFSAVQ--DPH--S-R----ICFNIGCMYTILKNMTEAEKAFTRSINR-DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHTTCHHHHHHHHHTSS--SCC--H-H----HHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHc--CCC--h-H----HHHHHHHHHHHcCCHHHHHHHHHHHHHh-CccchHHHHHHHHHH
Confidence 356899999999998762 221 1 1 2222233345679999999999876654 445676666665543
No 96
>1am7_A Lysozyme; glycosidase, transglycosylase, evolution; HET: TRN; 2.30A {Enterobacteria phage lambda} SCOP: d.2.1.4 PDB: 1d9u_A* 3d3d_A*
Probab=54.10 E-value=6 Score=26.93 Aligned_cols=35 Identities=11% Similarity=0.163 Sum_probs=32.5
Q ss_pred ceehhhhhhHHHHHHhcCCHHHHHHHHHhhccccc
Q 034603 34 KTYFELRRQKFLEALDKHERVKALDILMKDIKAFS 68 (89)
Q Consensus 34 ~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~ 68 (89)
-+.++|.+..+|+.+..|++.+|++-|+++-+-|.
T Consensus 94 ~A~~Li~~rgal~~i~~G~i~~a~~~la~~WASLP 128 (158)
T 1am7_A 94 VALQQIKERGALPMIDRGDIRQAIDRCSNIXASLP 128 (158)
T ss_dssp HHHHHHHHTTCHHHHHHTCHHHHHHHHTTTCTTSC
T ss_pred HHHHHHHHcCcHHHHHcCCHHHHHHHhccccccCC
Confidence 37899999999999999999999999999999884
No 97
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=53.88 E-value=25 Score=23.69 Aligned_cols=69 Identities=12% Similarity=0.051 Sum_probs=33.5
Q ss_pred cCCHHHHHH-Hhccc-ccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 10 AGKLDEAEK-YLSGF-TQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 10 ~G~Wd~a~~-~L~~l-~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
-|+|++|.+ .+... ...++++.. ...-+. ..=.-+...|+..+|+.++++-+.- .+.++..+..++..+
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~-~~~~~~--~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~ 108 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLR-DHPQPF--EEGLRRLQEGDLPNAVLLFEAAVQQ-DPKHMEAWQYLGTTQ 108 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTT-TCSSHH--HHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCccc-chHHHH--HHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 467777776 55533 222222221 111111 2233456789999999999966643 456677777665543
No 98
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=53.85 E-value=26 Score=25.59 Aligned_cols=32 Identities=13% Similarity=0.173 Sum_probs=16.8
Q ss_pred hcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 49 DKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 49 ~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
..|+..+|+.++++-+. ..+.++..+..+..+
T Consensus 453 ~~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~ 484 (597)
T 2xpi_A 453 QLGNILLANEYLQSSYA-LFQYDPLLLNELGVV 484 (597)
T ss_dssp HHTCHHHHHHHHHHHHH-HCCCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-hCCCChHHHHHHHHH
Confidence 34666677776664332 233445555554443
No 99
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=53.36 E-value=32 Score=24.54 Aligned_cols=67 Identities=6% Similarity=-0.045 Sum_probs=31.6
Q ss_pred HhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 8 VLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
...|+|++|+.++...-..+.+.. .+.+. .=.=+...|+..+|+.++++-+.- .+.++..+..++.+
T Consensus 321 ~~~~~~~~A~~~~~~a~~~~~~~~--~~~~~----la~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 321 FILQDYKNAKEDFQKAQSLNPENV--YPYIQ----LACLLYKQGKFTESEAFFNETKLK-FPTLPEVPTFFAEI 387 (537)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCS--HHHHH----HHHHHHHTTCHHHHHHHHHHHHHH-CTTCTHHHHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHhCCCCH--HHHHH----HHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHH
Confidence 345667777766665532222111 11111 111123456777777777654433 33445555555443
No 100
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=52.13 E-value=14 Score=24.74 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=14.4
Q ss_pred HHHHhcCCHHHHHHHHHhhcc
Q 034603 45 LEALDKHERVKALDILMKDIK 65 (89)
Q Consensus 45 LElL~~~~~~~AL~~Lr~eL~ 65 (89)
-|++..|++.+|+.+++ ||.
T Consensus 18 ~EYf~~~D~~Ea~~~l~-eL~ 37 (165)
T 2rg8_A 18 QEYFEHGDTNEVAEMLR-DLN 37 (165)
T ss_dssp HHHHHHCCHHHHHHHHH-HHT
T ss_pred HHHHcCCCHHHHHHHHH-HhC
Confidence 46667788888888887 454
No 101
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=51.80 E-value=24 Score=23.03 Aligned_cols=59 Identities=3% Similarity=0.033 Sum_probs=35.2
Q ss_pred HHhcCCHHHHHHHhcccccc-cccccccceehhhhhhHHHHH-------HhcCCHHHHHHHHHhhccc
Q 034603 7 MVLAGKLDEAEKYLSGFTQV-HENMLSTKTYFELRRQKFLEA-------LDKHERVKALDILMKDIKA 66 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~-~~~~~~~~~~FlI~kQKfLEl-------L~~~~~~~AL~~Lr~eL~p 66 (89)
....|+|++|+..+..+-.. +++.....+.|.+ =.-|..+ -..|+..+|+..+++-+.-
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l-~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGA-MRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHH-HHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHH-HHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 35679999999999887322 2232221233322 2233333 1348889999999966553
No 102
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=51.50 E-value=31 Score=19.49 Aligned_cols=54 Identities=15% Similarity=0.070 Sum_probs=33.7
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhccc
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKA 66 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~p 66 (89)
....|+|++|+.++...-..+... . .+.+.+ =.- +...|+..+|+..+++-+.-
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~p~~-~-~~~~~l-a~~---~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 29 YAEHEQFDAALPHLRAALDFDPTY-S-VAWKWL-GKT---LQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTC-H-HHHHHH-HHH---HHHHTCHHHHHHHHHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHHCCCc-H-HHHHHH-HHH---HHHcCCHHHHHHHHHHHHHh
Confidence 356899999999998764443222 1 122222 111 23468999999999976543
No 103
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=51.47 E-value=34 Score=23.24 Aligned_cols=29 Identities=14% Similarity=0.121 Sum_probs=13.1
Q ss_pred cCCHHHHHHHHHhhcccccCCCHHHHHHHH
Q 034603 50 KHERVKALDILMKDIKAFSTYNEEVFKEAS 79 (89)
Q Consensus 50 ~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~ 79 (89)
.|+..+|..++++-+... +.+++.+..+.
T Consensus 182 ~~~~~~A~~~~~~al~~~-p~~~~~~~~~~ 210 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKY-GDIPEYVLAYI 210 (308)
T ss_dssp SCCHHHHHHHHHHHHHHH-TTCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 355555555555444432 23344444443
No 104
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=51.22 E-value=30 Score=23.49 Aligned_cols=31 Identities=3% Similarity=-0.002 Sum_probs=17.0
Q ss_pred hcCCHHHHHHHHHhhcccccCCCHHHHHHHHh
Q 034603 49 DKHERVKALDILMKDIKAFSTYNEEVFKEASL 80 (89)
Q Consensus 49 ~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ 80 (89)
..|+..+|+..+++-+.- .+.++..+..++.
T Consensus 259 ~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~ 289 (365)
T 4eqf_A 259 NGDRSEEAVEAYTRALEI-QPGFIRSRYNLGI 289 (365)
T ss_dssp HTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHhc-CCCchHHHHHHHH
Confidence 356677777777654442 3344555555543
No 105
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=51.19 E-value=31 Score=25.73 Aligned_cols=68 Identities=9% Similarity=-0.106 Sum_probs=36.4
Q ss_pred HhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 8 VLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
...|+|++|++++...-..+.++. .+.+.+- .=+...|+..+|+..+++-++- .+.++..+..++.++
T Consensus 68 ~~~g~~~~A~~~~~~al~~~p~~~--~~~~~la----~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~ 135 (568)
T 2vsy_A 68 WTQQRHAEAAVLLQQASDAAPEHP--GIALWLG----HALEDAGQAEAAAAAYTRAHQL-LPEEPYITAQLLNWR 135 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCH--HHHHHHH----HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCH--HHHHHHH----HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 456778888777776533332221 1222211 1123557777788777755543 345566666665543
No 106
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=51.04 E-value=30 Score=26.20 Aligned_cols=69 Identities=14% Similarity=0.019 Sum_probs=37.4
Q ss_pred hHHHHHhcCCHHHHHHHhccc-----ccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhccc----ccCCCHH
Q 034603 3 HFEDMVLAGKLDEAEKYLSGF-----TQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKA----FSTYNEE 73 (89)
Q Consensus 3 ~fr~~Vl~G~Wd~a~~~L~~l-----~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~p----l~~~~~~ 73 (89)
.++++-..|+|++|+..+... +.+.++...+.-.+--+=. =+...|+..+|+...++-|+. +++.+|+
T Consensus 304 ~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~---~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~ 380 (433)
T 3qww_A 304 EFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMG---VCLYMQDWEGALKYGQKIIKPYSKHYPVYSLN 380 (433)
T ss_dssp HHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHH---HHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHH
T ss_pred HHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHH---HHHhhcCHHHHHHHHHHHHHHHHHHcCCCChH
Confidence 456666679999999988653 2333332221000111111 123457777777777766655 4556665
Q ss_pred H
Q 034603 74 V 74 (89)
Q Consensus 74 ~ 74 (89)
.
T Consensus 381 ~ 381 (433)
T 3qww_A 381 V 381 (433)
T ss_dssp H
T ss_pred H
Confidence 4
No 107
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=50.91 E-value=28 Score=25.15 Aligned_cols=74 Identities=11% Similarity=0.022 Sum_probs=42.9
Q ss_pred HHhcCCHHHHHHHhccccc-ccccc----------cccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHH
Q 034603 7 MVLAGKLDEAEKYLSGFTQ-VHENM----------LSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVF 75 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~-~~~~~----------~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~ 75 (89)
+...|+|++|++.+...-. ..... .. .....++-..=.=++..|+..+|+..+++-|. +.+.++..+
T Consensus 233 ~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~-~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~-~~p~~~~a~ 310 (370)
T 1ihg_A 233 FFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQ-PVALSCVLNIGACKLKMSDWQGAVDSCLEALE-IDPSNTKAL 310 (370)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-TCTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH-hCchhHHHH
Confidence 4568999999998876522 11100 00 01111111222224567999999999997776 355677777
Q ss_pred HHHHhhh
Q 034603 76 KEASLLL 82 (89)
Q Consensus 76 ~~l~~ll 82 (89)
..++..+
T Consensus 311 ~~lg~~~ 317 (370)
T 1ihg_A 311 YRRAQGW 317 (370)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7665543
No 108
>4b0z_A RPN12, 26S proteasome regulatory subunit RPN12; protein binding, proteasome ubitquitin; HET: SGM GOL; 1.58A {Schizosaccharomyces pombe}
Probab=50.59 E-value=37 Score=23.51 Aligned_cols=65 Identities=22% Similarity=0.270 Sum_probs=42.8
Q ss_pred hHHHHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 3 HFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 3 ~fr~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
.++++++.|++...-+.+.... + ..| ..|++.+-..-+.+|+.++.+--..++ ..+++.+|
T Consensus 140 ~l~~al~~GnY~kff~l~~~~p-------~--~~~----~~~~~~l~~~vR~~~l~~i~kaY~~i~------l~~~~~~L 200 (229)
T 4b0z_A 140 SLEQNVMEGAFDKVASMIRSCN-------F--PEF----SYFMKIVMSMVRNEIATCAEKVYSEIP------LSNATSLL 200 (229)
T ss_dssp HHHHHHHTTCHHHHHHHHHTCC-------C--GGG----HHHHHHHHHHHHHHHHHHHHHHCSEEE------HHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHhcCc-------c--chH----HHHHHHHHHHHHHHHHHHHHHHcCCCC------HHHHHHHh
Confidence 4789999999999988876541 1 111 235566655556778888876655444 56677777
Q ss_pred cCCC
Q 034603 83 PLEN 86 (89)
Q Consensus 83 tl~~ 86 (89)
-+++
T Consensus 201 ~f~s 204 (229)
T 4b0z_A 201 YLEN 204 (229)
T ss_dssp TCSS
T ss_pred CCCC
Confidence 6654
No 109
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=50.55 E-value=41 Score=26.29 Aligned_cols=71 Identities=8% Similarity=-0.087 Sum_probs=42.8
Q ss_pred HHHHHhcCCHHHHHHHhcccc--------cccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHH
Q 034603 4 FEDMVLAGKLDEAEKYLSGFT--------QVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVF 75 (89)
Q Consensus 4 fr~~Vl~G~Wd~a~~~L~~l~--------~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~ 75 (89)
+-.++..|++++|++.+...- ..+.+. . .+. -..=.-++..|+..+|+..+++-++- .+.+.+.+
T Consensus 398 ~~~a~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~-~-~~~----~~~a~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~ 470 (681)
T 2pzi_A 398 VLQATVLSQPVQTLDSLRAARHGALDADGVDFSES-V-ELP----LMEVRALLDLGDVAKATRKLDDLAER-VGWRWRLV 470 (681)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTC-------CCTTC-S-HHH----HHHHHHHHHHTCHHHHHHHHHHHHHH-HCCCHHHH
T ss_pred HhhcccccCHHHHHHHHHHhhhhcccccccccccc-h-hHH----HHHHHHHHhcCCHHHHHHHHHHHhcc-CcchHHHH
Confidence 445577899999999988753 222111 1 122 22233445668888888888865553 45666666
Q ss_pred HHHHhh
Q 034603 76 KEASLL 81 (89)
Q Consensus 76 ~~l~~l 81 (89)
..++.+
T Consensus 471 ~~lg~~ 476 (681)
T 2pzi_A 471 WYRAVA 476 (681)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666544
No 110
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=50.33 E-value=20 Score=25.58 Aligned_cols=30 Identities=17% Similarity=0.121 Sum_probs=19.2
Q ss_pred CCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 51 HERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 51 ~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
|+..+|+..+++-+.- .+.++..+..++.+
T Consensus 442 ~~~~~A~~~~~~a~~~-~p~~~~~~~~l~~~ 471 (537)
T 3fp2_A 442 EKFNAAIKLLTKACEL-DPRSEQAKIGLAQL 471 (537)
T ss_dssp HHHHHHHHHHHHHHHH-CTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-CCCCHHHHHHHHHH
Confidence 7788888888865543 34556666666544
No 111
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=49.97 E-value=15 Score=27.20 Aligned_cols=69 Identities=12% Similarity=-0.007 Sum_probs=41.0
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
....|+|++|+.++...-.++.+.. ++.|.+ -. =+...|+..+|+..+++-+.- .+.+++.+..+..+.
T Consensus 327 ~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~~--g~--a~~~~g~~~~A~~~~~~al~l-~P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 327 YLKLREYTKAVECCDKALGLDSANE--KGLYRR--GE--AQLLMNEFESAKGDFEKVLEV-NPQNKAARLQISMCQ 395 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCH--HHHHHH--HH--HHHHTTCHHHHHHHHHHHHTT-C----CHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcCCccH--HHHHHH--HH--HHHHccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 3567999999999988644443321 233322 11 234568999999999976553 445666666665543
No 112
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=49.31 E-value=21 Score=22.65 Aligned_cols=57 Identities=9% Similarity=-0.016 Sum_probs=34.3
Q ss_pred HHhcCCHHHHHHHhccccccc-----ccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhccc
Q 034603 7 MVLAGKLDEAEKYLSGFTQVH-----ENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKA 66 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~-----~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~p 66 (89)
....|+|++|+.++...-.+. .++. ....++-..=.=+...|+..+|+..+++-+.-
T Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 114 (283)
T 3edt_B 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHP---AVAATLNNLAVLYGKRGKYKEAEPLCKRALEI 114 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCH---HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHcCCcch---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 356899999999998763221 1111 11122222233345679999999998876654
No 113
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=49.22 E-value=18 Score=25.05 Aligned_cols=59 Identities=15% Similarity=0.063 Sum_probs=33.6
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhccc
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKA 66 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~p 66 (89)
.....|+|++|+.++...-..+..+.. ....++-..=.=+...|+..+|+..+++-+.-
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 115 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAGTEDLR--TLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTL 115 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHH--HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhcccChh--HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 356789999999999876433322211 11111111111233568888888888766543
No 114
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=48.30 E-value=16 Score=23.34 Aligned_cols=20 Identities=20% Similarity=0.114 Sum_probs=16.6
Q ss_pred HHHHhcCCHHHHHHHHHhhcc
Q 034603 45 LEALDKHERVKALDILMKDIK 65 (89)
Q Consensus 45 LElL~~~~~~~AL~~Lr~eL~ 65 (89)
=|++..||..+|..|++ ||.
T Consensus 15 ~EY~~~~D~~Ea~~cl~-eL~ 34 (129)
T 2nsz_A 15 KEYLLSGDISEAEHCLK-ELE 34 (129)
T ss_dssp HHHHHHCCHHHHHHHHH-HHT
T ss_pred HHHHcCCCHHHHHHHHH-HhC
Confidence 47788899999999998 664
No 115
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=48.27 E-value=32 Score=24.20 Aligned_cols=75 Identities=13% Similarity=0.010 Sum_probs=44.2
Q ss_pred HHhcCCHHHHHHHhccccccccccc--cc-------ceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHH
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENML--ST-------KTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKE 77 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~--~~-------~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~ 77 (89)
....|+|++|+..+...-.++.+.. .. .....++-..=.=++..|+..+|+..+++-|.- .+.++..+..
T Consensus 157 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~ 235 (336)
T 1p5q_A 157 YFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL-DSNNEKGLSR 235 (336)
T ss_dssp HHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHH
Confidence 3457999999999987633332221 00 000112222222345679999999999976664 5567777766
Q ss_pred HHhhh
Q 034603 78 ASLLL 82 (89)
Q Consensus 78 l~~ll 82 (89)
++..+
T Consensus 236 lg~~~ 240 (336)
T 1p5q_A 236 RGEAH 240 (336)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65543
No 116
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=47.57 E-value=32 Score=23.40 Aligned_cols=65 Identities=8% Similarity=0.066 Sum_probs=37.1
Q ss_pred cCCHHHHHHHhcccccccccccccceehhhhhhHHHHHH-hcCCHHHHHHHHHhhcc--cccC-CCHHHHHHHHhh
Q 034603 10 AGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEAL-DKHERVKALDILMKDIK--AFST-YNEEVFKEASLL 81 (89)
Q Consensus 10 ~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL-~~~~~~~AL~~Lr~eL~--pl~~-~~~~~~~~l~~l 81 (89)
.|++++|.+.+...-....+. ..++ ..|..++ ..|+..+|..++++-+. ++.+ .++..+..+..+
T Consensus 182 ~~~~~~A~~~~~~al~~~p~~----~~~~---~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~ 250 (308)
T 2ond_A 182 SKDKSVAFKIFELGLKKYGDI----PEYV---LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAF 250 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHTTC----HHHH---HHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCCc----HHHH---HHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHH
Confidence 477777777776542222111 2222 2333333 44888999999988877 4554 356666655443
No 117
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=46.73 E-value=26 Score=23.75 Aligned_cols=58 Identities=19% Similarity=0.169 Sum_probs=33.2
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcc
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIK 65 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~ 65 (89)
.....|+|++|+.++...-..+..+.. ....++-..=.-+...|+..+|+..+++-+.
T Consensus 18 ~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 75 (406)
T 3sf4_A 18 RLCKSGDCRAGVSFFEAAVQVGTEDLK--TLSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCSCHH--HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcCcccHH--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 356789999999999876333322211 1111222222233456888888888776443
No 118
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=46.11 E-value=28 Score=23.55 Aligned_cols=58 Identities=12% Similarity=0.039 Sum_probs=28.5
Q ss_pred HhcCCHHHHHHHhcccccc-cccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhccc
Q 034603 8 VLAGKLDEAEKYLSGFTQV-HENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKA 66 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~-~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~p 66 (89)
...|++++|+.++...-.+ ...... .....++...=.=+...|+..+|+..+.+-+..
T Consensus 238 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 296 (406)
T 3sf4_A 238 IFLGEFETASEYYKKTLLLARQLKDR-AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 296 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCChHHHHHHHHHHHHHHHhCcCc-hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 4567888887777654211 111110 011111112222234567788888777765544
No 119
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=45.98 E-value=24 Score=28.44 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=8.3
Q ss_pred cCCHHHHHHHhccc
Q 034603 10 AGKLDEAEKYLSGF 23 (89)
Q Consensus 10 ~G~Wd~a~~~L~~l 23 (89)
.|++++|++++...
T Consensus 22 ~G~~~eAi~~~~kA 35 (723)
T 4gyw_A 22 QGNIEEAVRLYRKA 35 (723)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 46666666666543
No 120
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=45.82 E-value=47 Score=22.45 Aligned_cols=56 Identities=20% Similarity=0.110 Sum_probs=34.9
Q ss_pred HhcCCHHHHHHHhcccccccccccccceehh---hhhhHHHHHHhcCCHHHHHHHHHhhcc
Q 034603 8 VLAGKLDEAEKYLSGFTQVHENMLSTKTYFE---LRRQKFLEALDKHERVKALDILMKDIK 65 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~Fl---I~kQKfLElL~~~~~~~AL~~Lr~eL~ 65 (89)
+..|++++|+.++.....+..... ...+. .+-..-+=++..|+..+|+..+++-+.
T Consensus 169 ~~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 169 ALDGQYIEASDIYSKLIKSSMGNR--LSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHTTCHHHHHHHHHHHHHTTSSCT--TTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHhCCHHHHHHHHHHHHHHHhcCC--cccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 456999999999987643332221 12221 122223335567999999999997665
No 121
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=45.62 E-value=25 Score=28.37 Aligned_cols=32 Identities=9% Similarity=0.073 Sum_probs=17.9
Q ss_pred hcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 49 DKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 49 ~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
+.|+..+|+..+++-|+ +.+.+++.+..+..+
T Consensus 123 ~~g~~~eAi~~~~~Al~-l~P~~~~a~~~L~~~ 154 (723)
T 4gyw_A 123 DSGNIPEAIASYRTALK-LKPDFPDAYCNLAHC 154 (723)
T ss_dssp HTTCHHHHHHHHHHHHH-HCSCCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH-hCCCChHHHhhhhhH
Confidence 34666667766665444 244555555555444
No 122
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=45.05 E-value=15 Score=26.84 Aligned_cols=22 Identities=14% Similarity=0.219 Sum_probs=18.1
Q ss_pred HHHHHhcCCHHHHHHHHHhhc-cc
Q 034603 44 FLEALDKHERVKALDILMKDI-KA 66 (89)
Q Consensus 44 fLElL~~~~~~~AL~~Lr~eL-~p 66 (89)
.-|++..|+..+|..|++ || .|
T Consensus 18 l~Ey~~~~d~~Ea~~ci~-el~~p 40 (339)
T 1ug3_A 18 IEEYLHLNDMKEAVQCVQ-ELASP 40 (339)
T ss_dssp HHHHHHHCCHHHHHHHHH-TTCCG
T ss_pred HHHHHhCCCHHHHHHHHH-HcCCc
Confidence 458888999999999999 56 45
No 123
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=44.82 E-value=33 Score=23.06 Aligned_cols=61 Identities=11% Similarity=-0.118 Sum_probs=33.2
Q ss_pred HHHHHhcCCHHHHHHHhcccccccccccccceehhhh-hhHHHHHHhcCCHHHHHHHHHhhcc
Q 034603 4 FEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELR-RQKFLEALDKHERVKALDILMKDIK 65 (89)
Q Consensus 4 fr~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~-kQKfLElL~~~~~~~AL~~Lr~eL~ 65 (89)
.+.....|++++|.+++...-........ .-.+... ...-.=+...|+..+|+..+++-+.
T Consensus 82 ~~~~~~~~~y~~A~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 143 (293)
T 2qfc_A 82 VIMLCKQKRYKEIYNKVWNELKKEEYHPE-FQQFLQWQYYVAAYVLKKVDYEYCILELKKLLN 143 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHT
T ss_pred HHHHHHhhhHHHHHHHHHHHhccccCChh-HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 45667899999999988654211111110 0011111 1111123466789999999887664
No 124
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=44.78 E-value=44 Score=19.31 Aligned_cols=73 Identities=12% Similarity=0.039 Sum_probs=40.9
Q ss_pred HHHhcCCHHHHHHHhccc-ccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHH
Q 034603 6 DMVLAGKLDEAEKYLSGF-TQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEAS 79 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l-~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~ 79 (89)
.+...|+|..|+.-+..- ...++........--|+.+==.-+...|+..+|+...++-+. +.|.++.....+.
T Consensus 14 ~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~-l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 14 VAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE-LDPEHQRANGNLK 87 (104)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-HCTTCHHHHHHHH
T ss_pred HHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh-cCCCCHHHHhhHH
Confidence 356689999999988754 222211100001112332222334467999999999986654 4556665544443
No 125
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=44.48 E-value=36 Score=23.06 Aligned_cols=73 Identities=8% Similarity=0.024 Sum_probs=38.5
Q ss_pred HhcCCHHHHHHHhcccccccccccc-cceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 8 VLAGKLDEAEKYLSGFTQVHENMLS-TKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~~~~~~~-~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
...|++++|+.++.....++++... ....++..-....+.-+.++..+|+...+ .+.++.+.++.....+-..
T Consensus 210 ~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~-~~~~l~~~~~~~~~~~k~~ 283 (292)
T 1qqe_A 210 LAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD-NFMRLDKWKITILNKIKES 283 (292)
T ss_dssp HHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHT-TSSCCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc-cCCccHHHHHHHHHHHHHH
Confidence 4579999999999887544433211 11222221122222224567889999987 4555555545555554433
No 126
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=44.46 E-value=14 Score=27.66 Aligned_cols=22 Identities=18% Similarity=0.255 Sum_probs=18.2
Q ss_pred HHHHHhcCCHHHHHHHHHhhccc
Q 034603 44 FLEALDKHERVKALDILMKDIKA 66 (89)
Q Consensus 44 fLElL~~~~~~~AL~~Lr~eL~p 66 (89)
.-|++..||..+|..|++ ||..
T Consensus 19 i~EY~~~~D~~Ea~~~l~-eL~~ 40 (364)
T 3l6a_A 19 VTEYLNSGNANEAVNGVR-EMRA 40 (364)
T ss_dssp HHHHHHHCCHHHHHHHHH-HHTC
T ss_pred HHHHHhCCCHHHHHHHHH-HhCC
Confidence 458889999999999999 5643
No 127
>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1
Probab=44.35 E-value=40 Score=22.18 Aligned_cols=48 Identities=17% Similarity=0.199 Sum_probs=34.3
Q ss_pred ceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 34 KTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 34 ~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
.+.|=|.=+.||+++..|...+|-.++++-=.-+.....+..+.|..+
T Consensus 51 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i 98 (156)
T 2nxp_A 51 QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSL 98 (156)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcC
Confidence 477888899999999999999999999844333333334445555443
No 128
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=44.21 E-value=53 Score=24.00 Aligned_cols=67 Identities=9% Similarity=0.082 Sum_probs=36.1
Q ss_pred hcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCC-HHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 9 LAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHE-RVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 9 l~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~-~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
..|++++|++.+...-.++.+... +. -..=.=+...|+ ..+|+.++++-|. +.+.+...+..+..++
T Consensus 109 ~~g~~~~Al~~~~~al~l~P~~~~--a~----~~~g~~l~~~g~d~~eAl~~~~~al~-l~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 109 RDERSERAFKLTRDAIELNAANYT--VW----HFRRVLLKSLQKDLHEEMNYITAIIE-EQPKNYQVWHHRRVLV 176 (382)
T ss_dssp HTCCCHHHHHHHHHHHHHCTTCHH--HH----HHHHHHHHHTTCCHHHHHHHHHHHHH-HCTTCHHHHHHHHHHH
T ss_pred HCCChHHHHHHHHHHHHhCccCHH--HH----HHHHHHHHHcccCHHHHHHHHHHHHH-HCCCCHHHHHHHHHHH
Confidence 357888888888776433322211 11 111122233464 7777777775544 3455666666665544
No 129
>1z2z_A Probable tRNA pseudouridine synthase D; alpha-beta protein., structural genomics, PSI, protein structure initiative; 2.60A {Methanosarcina mazei}
Probab=44.06 E-value=15 Score=28.21 Aligned_cols=46 Identities=13% Similarity=0.089 Sum_probs=26.3
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHH
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDI 59 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~ 59 (89)
.+++.|+|.+|...+-.-....+.....+++ +.| -+.||..+||+.
T Consensus 187 ~~ll~g~~~~Av~lil~~~~~~e~~~~~~ar-----~~~---~~~gd~~~al~~ 232 (446)
T 1z2z_A 187 KAIVEGNFEKAALLYIAEPFPEEPEETKNAR-----QFV---KDTLDFKEGLKT 232 (446)
T ss_dssp HHHHHTCHHHHHHHHHSCCCTTSCTTHHHHH-----HHH---HHHCCHHHHHHH
T ss_pred HHHHcCCHHHHHHHHhcCCCcccCHHHHHHH-----HHH---HHcCCHHHHHHH
Confidence 5789999999999875432222222111122 122 226788887764
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=43.82 E-value=18 Score=22.10 Aligned_cols=60 Identities=12% Similarity=-0.052 Sum_probs=32.9
Q ss_pred HhcCCHHHHHHHhcccccc-cccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhccccc
Q 034603 8 VLAGKLDEAEKYLSGFTQV-HENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFS 68 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~-~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~ 68 (89)
...|+|++|+.++...-.+ ...... ...-..+-..=.=+...|+..+|...+++-+.-..
T Consensus 118 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 118 LHFGDLAGARQEYEKSLVYAQQADDQ-VAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4569999999998765222 111100 00001111111223456899999999987666544
No 131
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=43.30 E-value=21 Score=23.17 Aligned_cols=58 Identities=10% Similarity=0.035 Sum_probs=34.4
Q ss_pred HHHhcCCHHHHHHHhcccccc-cc----cccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhccc
Q 034603 6 DMVLAGKLDEAEKYLSGFTQV-HE----NMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKA 66 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~-~~----~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~p 66 (89)
.....|+|++|+.++...-.+ .. +.. ....++-..=.-+...|+..+|+.++++-+.-
T Consensus 36 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 98 (311)
T 3nf1_A 36 QYASQGRYEVAVPLCKQALEDLEKTSGHDHP---DVATMLNILALVYRDQNKYKDAANLLNDALAI 98 (311)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 356789999999999876322 10 111 11112222222344678999999998876654
No 132
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=42.86 E-value=80 Score=24.19 Aligned_cols=67 Identities=10% Similarity=-0.010 Sum_probs=33.6
Q ss_pred HHHHhcCCHHHHHHHhccc-----ccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhccc----ccCCCHHH
Q 034603 5 EDMVLAGKLDEAEKYLSGF-----TQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKA----FSTYNEEV 74 (89)
Q Consensus 5 r~~Vl~G~Wd~a~~~L~~l-----~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~p----l~~~~~~~ 74 (89)
...--.|+|++|+..+... ..+.++...+.. .+-.=-.=+...|+..+|....++-|+. +++++|+.
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~---~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLR---LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHH---HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH---HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 3344689999999887643 233332211100 0000011123447777776666655544 45566654
No 133
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=41.58 E-value=50 Score=24.68 Aligned_cols=13 Identities=31% Similarity=0.376 Sum_probs=6.8
Q ss_pred cCCHHHHHHHhcc
Q 034603 10 AGKLDEAEKYLSG 22 (89)
Q Consensus 10 ~G~Wd~a~~~L~~ 22 (89)
.|+|++|++++..
T Consensus 19 ~g~~~~A~~~~~~ 31 (477)
T 1wao_1 19 AKDYENAIKFYSQ 31 (477)
T ss_dssp TTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHH
Confidence 4555555555544
No 134
>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1
Probab=41.05 E-value=45 Score=21.58 Aligned_cols=45 Identities=11% Similarity=0.129 Sum_probs=31.9
Q ss_pred ceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHH
Q 034603 34 KTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEAS 79 (89)
Q Consensus 34 ~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~ 79 (89)
.+.|=|.=+.|||++.+|...+|-.++.+--.-+... .+..+.|.
T Consensus 32 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~ 76 (138)
T 2j4b_A 32 PLLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFE 76 (138)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHh
Confidence 4788889999999999999999999997443333333 44444443
No 135
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=40.26 E-value=36 Score=21.44 Aligned_cols=37 Identities=11% Similarity=0.052 Sum_probs=27.9
Q ss_pred HHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 45 LEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 45 LElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
.-+...|+..+|+..+++-+ -+.+.+++.+..++..+
T Consensus 44 ~~~~~~g~~~eA~~~~~~al-~~~P~~~~~~~~lg~~~ 80 (151)
T 3gyz_A 44 YDFYNKGRIEEAEVFFRFLC-IYDFYNVDYIMGLAAIY 80 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHH-HHCTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH-HhCCCCHHHHHHHHHHH
Confidence 34567899999999999544 45678888888776554
No 136
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=40.16 E-value=30 Score=24.03 Aligned_cols=56 Identities=7% Similarity=-0.074 Sum_probs=27.4
Q ss_pred hcCCHHHHHHHhcccccc-cccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcc
Q 034603 9 LAGKLDEAEKYLSGFTQV-HENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIK 65 (89)
Q Consensus 9 l~G~Wd~a~~~L~~l~~~-~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~ 65 (89)
..|+|++|+.++...-.+ ...... ...-.++-.-=.=+...|+..+|+..+++-+.
T Consensus 196 ~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 196 DLKQYEDAISHFQKAYSMAEAEKQP-QLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHHHHHcCCh-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 458999998888754211 111100 00001111111112345777788877776665
No 137
>4aqn_A Pesticin; toxin, bacteriocin, colicin, three domains, muramidase; 1.98A {Yersinia pestis} PDB: 4epf_A 4arm_B 4arl_A 4arm_A 4arq_B 4arp_A 4arq_A
Probab=39.96 E-value=17 Score=27.89 Aligned_cols=22 Identities=9% Similarity=0.066 Sum_probs=20.3
Q ss_pred hhHHHHHhcCCHHHHHHHhccc
Q 034603 2 KHFEDMVLAGKLDEAEKYLSGF 23 (89)
Q Consensus 2 ~~fr~~Vl~G~Wd~a~~~L~~l 23 (89)
..|.++|..|||.+|..-|..+
T Consensus 311 PnFw~aV~k~DW~gA~~ELRnf 332 (357)
T 4aqn_A 311 PTVWNKVIAKDWNGLVNAFNNI 332 (357)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHC
T ss_pred hHHHHHHHhccHHHHHHHHHHh
Confidence 4689999999999999999987
No 138
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=39.59 E-value=45 Score=22.13 Aligned_cols=59 Identities=14% Similarity=-0.040 Sum_probs=35.3
Q ss_pred HhcCCHHHHHHHhccccccccc-cccc-----ceehhhhhhHHHHHHhcCCHHHHHHHHHhhccc
Q 034603 8 VLAGKLDEAEKYLSGFTQVHEN-MLST-----KTYFELRRQKFLEALDKHERVKALDILMKDIKA 66 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~~~~-~~~~-----~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~p 66 (89)
.-.|+|++|+.....--.++.+ .... .....++--+=.=+..-|+..+|+.+.++-|.-
T Consensus 22 ~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l 86 (159)
T 2hr2_A 22 LVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHY 86 (159)
T ss_dssp HHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4579999999887754222222 1110 012234444445566678999999998887764
No 139
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=39.48 E-value=62 Score=23.85 Aligned_cols=74 Identities=16% Similarity=0.012 Sum_probs=43.2
Q ss_pred HHhcCCHHHHHHHhccccccccccc--c-------cceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHH
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENML--S-------TKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKE 77 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~--~-------~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~ 77 (89)
....|+|++|+......-.++.+.. . ......++-..=.=++..|+..+|+..+++-|.- .+.++..+..
T Consensus 278 ~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~-~p~~~~a~~~ 356 (457)
T 1kt0_A 278 YFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL-DSANEKGLYR 356 (457)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-CCccHHHHHH
Confidence 4568999999999886533322221 0 0011122222223345679999999999976663 4466666666
Q ss_pred HHhh
Q 034603 78 ASLL 81 (89)
Q Consensus 78 l~~l 81 (89)
++..
T Consensus 357 ~g~a 360 (457)
T 1kt0_A 357 RGEA 360 (457)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5443
No 140
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=38.98 E-value=43 Score=26.16 Aligned_cols=68 Identities=7% Similarity=-0.046 Sum_probs=42.9
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhh
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLL 81 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~l 81 (89)
....|+|++|++.+...-..+.++. .+.|.+ =.=+...|+..+|+..+++-++- .+.+++.+..++.+
T Consensus 443 ~~~~g~~~~A~~~~~~al~~~p~~~--~a~~~l----g~~~~~~g~~~~A~~~~~~al~l-~P~~~~~~~~lg~~ 510 (681)
T 2pzi_A 443 LLDLGDVAKATRKLDDLAERVGWRW--RLVWYR----AVAELLTGDYDSATKHFTEVLDT-FPGELAPKLALAAT 510 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHCCCH--HHHHHH----HHHHHHHTCHHHHHHHHHHHHHH-STTCSHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHhccCcchH--HHHHHH----HHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHHHHHH
Confidence 4567999999999988744433221 233321 12245679999999999975553 44566666666544
No 141
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=37.33 E-value=24 Score=26.58 Aligned_cols=21 Identities=19% Similarity=0.140 Sum_probs=18.1
Q ss_pred HHHHHhcCCHHHHHHHHHhhcc
Q 034603 44 FLEALDKHERVKALDILMKDIK 65 (89)
Q Consensus 44 fLElL~~~~~~~AL~~Lr~eL~ 65 (89)
.=|++..|++.+|..|++ ||.
T Consensus 224 L~EY~~s~D~~EA~~ci~-EL~ 244 (358)
T 3eiq_C 224 LKEYLLSGDISEAEHCLK-ELE 244 (358)
T ss_dssp HHHHHHHCCHHHHHHHHH-HHC
T ss_pred HHHhccCCCHHHHHHHHH-Hcc
Confidence 457888999999999999 775
No 142
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=37.09 E-value=37 Score=24.87 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=29.8
Q ss_pred cCC-HHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHh
Q 034603 10 AGK-LDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASL 80 (89)
Q Consensus 10 ~G~-Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ 80 (89)
.|+ |++|+..+...-.++.+... +.+. .... +...|+..+|+.++++-|. +.+.+...+..++.
T Consensus 144 ~g~d~~eAl~~~~~al~l~P~~~~--a~~~--~g~~--~~~~g~~~eAl~~~~kal~-ldP~~~~a~~~lg~ 208 (382)
T 2h6f_A 144 LQKDLHEEMNYITAIIEEQPKNYQ--VWHH--RRVL--VEWLRDPSQELEFIADILN-QDAKNYHAWQHRQW 208 (382)
T ss_dssp TTCCHHHHHHHHHHHHHHCTTCHH--HHHH--HHHH--HHHHTCCTTHHHHHHHHHH-HCTTCHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHCCCCHH--HHHH--HHHH--HHHccCHHHHHHHHHHHHH-hCccCHHHHHHHHH
Confidence 475 88888888776433322211 1111 1111 1122555666666664443 23344444444443
No 143
>2rp4_A Transcription factor P53; DMP53, oligomerization domain, tetramerizaiton domain, nucleus; NMR {Drosophila melanogaster}
Probab=36.92 E-value=31 Score=20.82 Aligned_cols=39 Identities=21% Similarity=0.328 Sum_probs=29.3
Q ss_pred hhhHHHHHHhcCCHH-HHHHHHHhhcccccCCCHHHHHHHHhhhcCC
Q 034603 40 RRQKFLEALDKHERV-KALDILMKDIKAFSTYNEEVFKEASLLLPLE 85 (89)
Q Consensus 40 ~kQKfLElL~~~~~~-~AL~~Lr~eL~pl~~~~~~~~~~l~~lltl~ 85 (89)
.|.-.|+.+| |-+. .|.++|| ++.++.+-+....||.|+
T Consensus 30 kKe~LLqSIE-gmik~aA~~vLR------nP~~~kLr~~an~Ll~LK 69 (76)
T 2rp4_A 30 NKEWLLQSIE-GMIKEAAAEVLR------NPNQENLRRHANKLLSLK 69 (76)
T ss_dssp CHHHHHHHHH-HHHHHHHHHHHH------CTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHH-HHHHHHHHHHHh------CCcHHHHHHHHHHHHHHH
Confidence 4556677777 5555 4999999 667788888888888775
No 144
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=36.41 E-value=75 Score=22.28 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=35.8
Q ss_pred hcCCHHHHHHHhccccccccc-----ccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHh
Q 034603 9 LAGKLDEAEKYLSGFTQVHEN-----MLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASL 80 (89)
Q Consensus 9 l~G~Wd~a~~~L~~l~~~~~~-----~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ 80 (89)
.-|++++|+.++.....+... ... .......+---+=.+..++..+|+.+.++-+. +.+.+++.+..+..
T Consensus 106 ~~g~~~~A~~~~~ka~~i~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~-~~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 106 HMGRLSDVQIYVDKVKHVCEKFSSPYRIE-SPELDCEEGWTRLKCGGNQNERAKVCFEKALE-KKPKNPEFTSGLAI 180 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCSSCCC-CHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH-HSTTCHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHHHhHhcccccchh-hHHHHHHHHHHHHHHccccHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Confidence 369999999998765322111 101 01111111001111234567888888886554 35567776665543
No 145
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=35.77 E-value=1.3e+02 Score=22.49 Aligned_cols=68 Identities=7% Similarity=0.009 Sum_probs=35.3
Q ss_pred HHHHHhcCCHHHHHHHhccc-----ccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhccc----ccCCCHHH
Q 034603 4 FEDMVLAGKLDEAEKYLSGF-----TQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKA----FSTYNEEV 74 (89)
Q Consensus 4 fr~~Vl~G~Wd~a~~~L~~l-----~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~p----l~~~~~~~ 74 (89)
+.+.--.|+|++|++..... ..+.++...+ + -++..=..=+...|+..+|+...++-|+. +++.+|+.
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~-~--~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~ 370 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQ-L--KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVR 370 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHH-H--HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHH-H--HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHH
Confidence 34455689999999887644 2233322111 0 01111111123457777777776665554 45566654
No 146
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=34.84 E-value=65 Score=23.63 Aligned_cols=38 Identities=16% Similarity=0.119 Sum_probs=23.3
Q ss_pred HHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 44 FLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 44 fLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
++|+...|+..+|..++.+-|+-. +.+++.+..+..++
T Consensus 398 ~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~ 435 (530)
T 2ooe_A 398 LMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYL 435 (530)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHH
T ss_pred HHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 344445677777777777666543 35666666665543
No 147
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=34.58 E-value=18 Score=22.14 Aligned_cols=22 Identities=23% Similarity=0.250 Sum_probs=15.8
Q ss_pred hhHHHHHhcCCHHHHHHHhccc
Q 034603 2 KHFEDMVLAGKLDEAEKYLSGF 23 (89)
Q Consensus 2 ~~fr~~Vl~G~Wd~a~~~L~~l 23 (89)
+.|+.+|-.||-++|.+.+...
T Consensus 31 Kk~~~Ai~~gd~~~A~~~l~~a 52 (85)
T 3r8n_T 31 KKVYAAIEAGDKAAAQKAFNEM 52 (85)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 4677788888888777777543
No 148
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=33.46 E-value=40 Score=23.01 Aligned_cols=56 Identities=21% Similarity=0.138 Sum_probs=30.5
Q ss_pred HhcCCHHHHHHHhccccccc-ccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhc
Q 034603 8 VLAGKLDEAEKYLSGFTQVH-ENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDI 64 (89)
Q Consensus 8 Vl~G~Wd~a~~~L~~l~~~~-~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL 64 (89)
+..|++++|+.++...-.+. ++... ......+-..-+-++..|+..+|+..+++-+
T Consensus 166 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 166 VRQQKFDEAAASLQKEKSMYKEMENY-PTCYKKCIAQVLVQLHRADYVAAQKCVRESY 222 (307)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 45688888888887653221 11110 0000011112223455689999999998776
No 149
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=32.72 E-value=62 Score=23.87 Aligned_cols=67 Identities=10% Similarity=-0.055 Sum_probs=39.5
Q ss_pred CCHHHHHHHhcccccccccc-cccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 11 GKLDEAEKYLSGFTQVHENM-LSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 11 G~Wd~a~~~L~~l~~~~~~~-~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
|+|++|+.++...-.++... ....+.+.+- .=+...|+..+|+..+++-+.- .+.+++.+..+..++
T Consensus 235 g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg----~~~~~~g~~~~A~~~~~~al~l-~p~~~~a~~~l~~~~ 302 (474)
T 4abn_A 235 KISQQALSAYAQAEKVDRKASSNPDLHLNRA----TLHKYEESYGEALEGFSQAAAL-DPAWPEPQQREQQLL 302 (474)
T ss_dssp HHHHHHHHHHHHHHHHCGGGGGCHHHHHHHH----HHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCcccCHHHHHHHH----HHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHH
Confidence 78999999998764443310 1101222211 1223469999999999975553 446676666665443
No 150
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.55 E-value=28 Score=26.33 Aligned_cols=52 Identities=25% Similarity=0.263 Sum_probs=34.9
Q ss_pred hcCCHHHHHHHhcccc--cccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHh
Q 034603 9 LAGKLDEAEKYLSGFT--QVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMK 62 (89)
Q Consensus 9 l~G~Wd~a~~~L~~l~--~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~ 62 (89)
-.|+|.+|-+.|.++. .....+...++.|.+.+=+. +++.++..+|-..+++
T Consensus 149 ~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl--~l~~~d~~~a~~~~~k 202 (445)
T 4b4t_P 149 EEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMEL--SILKGDYSQATVLSRK 202 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHH--HHHHTCHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHH--HHHCCCHHHHHHHHHH
Confidence 3699999999999983 11111122246666665554 4677999999888875
No 151
>3op1_A Macrolide-efflux protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PEG; 2.49A {Streptococcus pneumoniae}
Probab=32.19 E-value=26 Score=25.94 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.0
Q ss_pred hhHHHHHhcCCHHHHHHHhcc
Q 034603 2 KHFEDMVLAGKLDEAEKYLSG 22 (89)
Q Consensus 2 ~~fr~~Vl~G~Wd~a~~~L~~ 22 (89)
+..|++|.+|+.++|-++|..
T Consensus 168 T~IR~~L~~G~v~~A~~lLGr 188 (308)
T 3op1_A 168 TRIRQAILDGNVKEAGKLLGA 188 (308)
T ss_dssp HHHHHHHHHTCHHHHHHHHSS
T ss_pred HHHHHHHHcCCHHHHHhhcCc
Confidence 468999999999999999974
No 152
>4b4t_T 26S proteasome regulatory subunit RPN12; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.03 E-value=87 Score=22.38 Aligned_cols=67 Identities=16% Similarity=0.163 Sum_probs=41.7
Q ss_pred hHHHHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 3 HFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 3 ~fr~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
.+++++++|+.+..-+.+..-.. +.+. =..|++.+-..-..+|+.+.-+--.+++ ...++.+|
T Consensus 147 ~le~al~eGnY~kff~l~~~~~~---------p~~~--~~~f~d~l~~~iR~~a~~~i~kaY~~i~------l~~~~~~L 209 (274)
T 4b4t_T 147 KLDRWLMEGSYQKAWDLLQSGSQ---------NISE--FDSFTDILKSAIRDEIAKNTELSYDFLP------LSNIKALL 209 (274)
T ss_dssp HHHHHHHHTCSHHHHHHHHTCTT---------CCHH--HHHHHHHHHHHHHHHHHHHHHHHCSSCC------HHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHhcCCC---------CcHH--HHHHHHHHHHHHHHHHHHHHHHHHhhcC------HHHHHHHh
Confidence 46788888888887665543211 1110 1235566655556788888887777665 56677776
Q ss_pred cCCC
Q 034603 83 PLEN 86 (89)
Q Consensus 83 tl~~ 86 (89)
-++|
T Consensus 210 ~F~s 213 (274)
T 4b4t_T 210 FFNN 213 (274)
T ss_dssp TCCS
T ss_pred CCCC
Confidence 6654
No 153
>2x0k_A Riboflavin biosynthesis protein RIBF; riboflavin kinase, nucleotide-binding, transferase, ATP-BIND multifunctional enzyme; 1.95A {Corynebacterium ammoniagenes}
Probab=29.80 E-value=34 Score=25.41 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=18.8
Q ss_pred hhHHHHHhcCCHHHHHHHhcc
Q 034603 2 KHFEDMVLAGKLDEAEKYLSG 22 (89)
Q Consensus 2 ~~fr~~Vl~G~Wd~a~~~L~~ 22 (89)
+..|++|.+|++++|.++|..
T Consensus 165 T~IR~~L~~G~i~~a~~lLGr 185 (338)
T 2x0k_A 165 TTVREFLSEGDVARANWALGR 185 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHTS
T ss_pred chHHHHHhcCcHHHHHHhcce
Confidence 468999999999999999964
No 154
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=29.66 E-value=55 Score=23.61 Aligned_cols=54 Identities=7% Similarity=-0.099 Sum_probs=26.1
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhc
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDI 64 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL 64 (89)
+...|+|++|+.++.+.....++.....+.|.+ -.-+ -..|+..+|+..+++-+
T Consensus 145 ~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~L--G~al--~~LG~~~eAl~~l~~a~ 198 (282)
T 4f3v_A 145 YGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAH--GVAA--ANLALFTEAERRLTEAN 198 (282)
T ss_dssp HHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHH--HHHH--HHTTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHhhccCCcccHHHHHHHH--HHHH--HHCCCHHHHHHHHHHHh
Confidence 345678888888777553222111100123222 1112 23356777777777543
No 155
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=28.39 E-value=1.1e+02 Score=20.71 Aligned_cols=49 Identities=20% Similarity=0.164 Sum_probs=35.3
Q ss_pred hhHHHHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHH
Q 034603 2 KHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILM 61 (89)
Q Consensus 2 ~~fr~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr 61 (89)
.+|.-+|..|+++.|.+++..+ ++.. .|+|===++|..|+..-|-.|.+
T Consensus 10 ~rF~LAL~lg~l~~A~e~a~~l---~~~~--------~Wk~Lg~~AL~~gn~~lAe~cy~ 58 (177)
T 3mkq_B 10 IRFDLALEYGNLDAALDEAKKL---NDSI--------TWERLIQEALAQGNASLAEMIYQ 58 (177)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH---CCHH--------HHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHh---CCHH--------HHHHHHHHHHHcCChHHHHHHHH
Confidence 4799999999999999998766 1111 24444446777788877777776
No 156
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=28.35 E-value=28 Score=28.37 Aligned_cols=26 Identities=4% Similarity=0.098 Sum_probs=22.4
Q ss_pred hhHHHHHhcCCHHHHHHHhccccccc
Q 034603 2 KHFEDMVLAGKLDEAEKYLSGFTQVH 27 (89)
Q Consensus 2 ~~fr~~Vl~G~Wd~a~~~L~~l~~~~ 27 (89)
..|...+-+|+|++|...+..+..++
T Consensus 543 ~~f~~~~~~g~~~~AL~~i~~L~llP 568 (661)
T 2qx5_A 543 SSIRELYFNKQWQETLSQMELLDLLP 568 (661)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTSCSC
T ss_pred HHHHHHHHcCCHHHHHHHHHhCCCCC
Confidence 46888899999999999999987554
No 157
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=27.18 E-value=48 Score=24.28 Aligned_cols=22 Identities=18% Similarity=0.138 Sum_probs=18.4
Q ss_pred HHHHHhcCCHHHHHHHHHhhcc-c
Q 034603 44 FLEALDKHERVKALDILMKDIK-A 66 (89)
Q Consensus 44 fLElL~~~~~~~AL~~Lr~eL~-p 66 (89)
.-|++..||+.+|..|++ ||. |
T Consensus 173 L~EY~~~~D~~EA~~ci~-EL~~p 195 (307)
T 2zu6_B 173 LKEYLLSGDISEAEHCLK-ELEVP 195 (307)
T ss_dssp HHHHHHHCCHHHHHHHHH-HHCCG
T ss_pred HHHHHcCCCHHHHHHHHH-HcCCC
Confidence 457888899999999999 675 5
No 158
>2vqe_T 30S ribosomal protein S20; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: a.7.6.1 PDB: 1gix_W* 1hnw_T* 1hnx_T* 1hnz_T* 1hr0_T 1j5e_T 1jgo_W* 1jgp_W* 1jgq_W* 1ml5_W* 1yl4_W 2b64_T* 2b9m_T* 2b9o_T* 2f4v_T* 2ow8_u* 2qnh_u* 2uxb_T* 1fjg_T* 2uxd_T* ...
Probab=26.31 E-value=34 Score=21.77 Aligned_cols=22 Identities=27% Similarity=0.274 Sum_probs=17.4
Q ss_pred hhHHHHHhcCCHHHHHHHhccc
Q 034603 2 KHFEDMVLAGKLDEAEKYLSGF 23 (89)
Q Consensus 2 ~~fr~~Vl~G~Wd~a~~~L~~l 23 (89)
+.|+.+|-.||-++|.+.+...
T Consensus 38 Kkv~~Ai~~gdk~~A~~~l~~a 59 (106)
T 2vqe_T 38 KKAVQLAQEGKAEEALKIMRKA 59 (106)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHH
Confidence 5678888999988888887654
No 159
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=26.21 E-value=40 Score=19.51 Aligned_cols=14 Identities=21% Similarity=0.012 Sum_probs=12.1
Q ss_pred cCCHHHHHHHHHhh
Q 034603 50 KHERVKALDILMKD 63 (89)
Q Consensus 50 ~~~~~~AL~~Lr~e 63 (89)
.||+.+|+..||+.
T Consensus 35 ~GDi~~Ai~~Lr~k 48 (64)
T 2cp9_A 35 GGDLKQAEIWLHKE 48 (64)
T ss_dssp TSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 48999999999965
No 160
>4a18_Q RPL36, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_Q 4a1b_Q 4a1d_Q
Probab=26.17 E-value=55 Score=20.87 Aligned_cols=46 Identities=13% Similarity=0.044 Sum_probs=33.0
Q ss_pred ehhhhhhHHHHHHhcCC---HHHHHHHHHhhcccccCCCHHHHHHHHhhh
Q 034603 36 YFELRRQKFLEALDKHE---RVKALDILMKDIKAFSTYNEEVFKEASLLL 82 (89)
Q Consensus 36 ~FlI~kQKfLElL~~~~---~~~AL~~Lr~eL~pl~~~~~~~~~~l~~ll 82 (89)
-|-=++..-+|+|..++ ...||.++.+.|--.... ..--.+|+.++
T Consensus 50 GfaPYErR~mELLKvsk~~~dKRAlKf~KKRlGth~RA-KrKreel~~vl 98 (104)
T 4a18_Q 50 GFAPYEKRIIELIKAGSAKDSKKATKIARKRLGTHRRA-KVKKALLEEAV 98 (104)
T ss_dssp CCCHHHHHHHHHHHHCSHHHHHHHHHHHHHHHCSHHHH-HHHHHHHHHHH
T ss_pred cCchhHHHHHHHHHcccchhhHHHHHHHHHHhhhHHHH-HHHHHHHHHHH
Confidence 36678899999999999 789999999987654311 23345555544
No 161
>3sxm_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.55A {Thermotoga maritima} PDB: 3sxk_A 3sxz_A
Probab=26.13 E-value=57 Score=19.61 Aligned_cols=27 Identities=15% Similarity=0.335 Sum_probs=23.0
Q ss_pred hhHHHHHHhcCCHHHHHHHHHhhcccc
Q 034603 41 RQKFLEALDKHERVKALDILMKDIKAF 67 (89)
Q Consensus 41 kQKfLElL~~~~~~~AL~~Lr~eL~pl 67 (89)
-+.-+++|..||...|-..++..+...
T Consensus 103 H~~I~~Ai~~~D~~~A~~~~~~Hl~~~ 129 (140)
T 3sxm_A 103 HKELIERIISGDKEGAIEKLKEHLKNV 129 (140)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 456889999999999999999887653
No 162
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=25.69 E-value=83 Score=21.43 Aligned_cols=60 Identities=15% Similarity=0.112 Sum_probs=31.3
Q ss_pred HHhcCCHHHHHHHhcccccccccccccceehhhh--hhHHHHHHhcCCHHHHHHHHHhhcccc
Q 034603 7 MVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELR--RQKFLEALDKHERVKALDILMKDIKAF 67 (89)
Q Consensus 7 ~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~--kQKfLElL~~~~~~~AL~~Lr~eL~pl 67 (89)
....|++++|..++.....+...... ...+... ...-.=++..|+..+|...+++-+.+-
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 245 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKY-HSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 245 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCC-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCc-chhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence 34568888888887765322111100 0111100 011111456789999999998777654
No 163
>4e97_A Lysozyme; hydrolase, alkylation with 2-mercaptoethanol; 1.30A {Enterobacteria phage T4} PDB: 4ekp_A 4ekq_A* 4ekr_A 4eks_A
Probab=25.64 E-value=37 Score=22.76 Aligned_cols=18 Identities=28% Similarity=0.279 Sum_probs=13.9
Q ss_pred hHHHHHhcCCHHHHHHHh
Q 034603 3 HFEDMVLAGKLDEAEKYL 20 (89)
Q Consensus 3 ~fr~~Vl~G~Wd~a~~~L 20 (89)
.+.++|-+|||++|-.-+
T Consensus 139 ~ml~~ln~gd~~~Aa~Em 156 (187)
T 4e97_A 139 NVLRMLQQKRWDEAAVNL 156 (187)
T ss_dssp HHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHH
Confidence 467889999999876544
No 164
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.50 E-value=1.7e+02 Score=20.15 Aligned_cols=66 Identities=14% Similarity=0.088 Sum_probs=36.7
Q ss_pred HHHHHhcCCHHHHHHHhcccccccccccc---c-ceehhhhh---hHHHH----HHhcCCHHHHHHHHHhhcccccC
Q 034603 4 FEDMVLAGKLDEAEKYLSGFTQVHENMLS---T-KTYFELRR---QKFLE----ALDKHERVKALDILMKDIKAFST 69 (89)
Q Consensus 4 fr~~Vl~G~Wd~a~~~L~~l~~~~~~~~~---~-~~~FlI~k---QKfLE----lL~~~~~~~AL~~Lr~eL~pl~~ 69 (89)
=++.+-+|++++|++.+..+-....+... . .......+ +-+.. +-..|+..+|++.+.+-++-.+.
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~ 87 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQ 87 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 36778999999999998776322221111 0 01111111 11222 13458999999998865554443
No 165
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=25.48 E-value=99 Score=22.98 Aligned_cols=82 Identities=10% Similarity=0.092 Sum_probs=45.0
Q ss_pred hhHHHHHhcCCHHHHHHHhcccccc-cccccc-cceehhhhhhHHHHHHhcCCHHHHHHHHHhhcccccCCC------HH
Q 034603 2 KHFEDMVLAGKLDEAEKYLSGFTQV-HENMLS-TKTYFELRRQKFLEALDKHERVKALDILMKDIKAFSTYN------EE 73 (89)
Q Consensus 2 ~~fr~~Vl~G~Wd~a~~~L~~l~~~-~~~~~~-~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl~~~~------~~ 73 (89)
...|-.+..|||..|..++...... +..... ...++-.+.- +=++..++..+|-..+..-+.-+.... .-
T Consensus 173 ~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~g--l~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~~ 250 (429)
T 4b4t_R 173 TIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTYYG--IHCLAVRNFKEAAKLLVDSLATFTSIELTSYESIA 250 (429)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHH--HGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHH--HHHHHhChHHHHHHHHHHHhccCCccchhhHHHHH
Confidence 3567788999999999999988433 221111 1122222222 224566777777666653322222111 24
Q ss_pred HHHHHHhhhcCC
Q 034603 74 VFKEASLLLPLE 85 (89)
Q Consensus 74 ~~~~l~~lltl~ 85 (89)
.|--+|.+++++
T Consensus 251 ~y~~l~al~~~~ 262 (429)
T 4b4t_R 251 TYASVTGLFTLE 262 (429)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHhcCC
Confidence 555667776655
No 166
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=25.08 E-value=1.1e+02 Score=23.15 Aligned_cols=22 Identities=27% Similarity=0.336 Sum_probs=18.3
Q ss_pred hhHHHHHhcCCHHHHHHHhccc
Q 034603 2 KHFEDMVLAGKLDEAEKYLSGF 23 (89)
Q Consensus 2 ~~fr~~Vl~G~Wd~a~~~L~~l 23 (89)
..|..++..|+|++|.+....+
T Consensus 657 ~~f~~~l~~~~~~~A~~~~~~~ 678 (814)
T 3mkq_A 657 QKFELALKVGQLTLARDLLTDE 678 (814)
T ss_dssp HHHHHHHHHTCHHHHHHHHTTC
T ss_pred hheehhhhcCCHHHHHHHHHhh
Confidence 3578889999999999987765
No 167
>2ynq_A ESSB; membrane protein, secretion, type V, secretion system; 2.40A {Geobacillus thermodenitrificans}
Probab=24.61 E-value=44 Score=22.82 Aligned_cols=15 Identities=13% Similarity=0.291 Sum_probs=13.1
Q ss_pred HHhcCCHHHHHHHHH
Q 034603 47 ALDKHERVKALDILM 61 (89)
Q Consensus 47 lL~~~~~~~AL~~Lr 61 (89)
++-+|+..+||++.+
T Consensus 83 yiGRg~~~eAlDiA~ 97 (161)
T 2ynq_A 83 YIGRSQSEEALELAR 97 (161)
T ss_dssp HHHHTCHHHHHHHHH
T ss_pred HHcCCchHHHHHHHH
Confidence 478899999999988
No 168
>3iz5_k 60S ribosomal protein L36 (L36E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_k
Probab=22.80 E-value=36 Score=22.02 Aligned_cols=33 Identities=15% Similarity=0.227 Sum_probs=27.5
Q ss_pred eehhhhhhHHHHHHhcCCHHHHHHHHHhhcccc
Q 034603 35 TYFELRRQKFLEALDKHERVKALDILMKDIKAF 67 (89)
Q Consensus 35 ~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL~pl 67 (89)
+-|-=++..-+|+|..++...||.++.+.|--.
T Consensus 51 ~GfAPYErR~mELLKvskDKRALKf~KKRlGth 83 (112)
T 3iz5_k 51 AGFAPYEKRITELLKVGKDKRALKVAKRKLGTH 83 (112)
T ss_dssp HHHHHHHHHHHHTTCCSHHHHHHHHHSSCCSHH
T ss_pred hcCchHHHHHHHHHHhhhhHHHHHHHHHHhhHH
Confidence 336778899999999999999999998876543
No 169
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=22.41 E-value=46 Score=22.46 Aligned_cols=28 Identities=11% Similarity=0.167 Sum_probs=22.0
Q ss_pred HHHHHhcCCHHHHHHHHHhhcccccCCCH
Q 034603 44 FLEALDKHERVKALDILMKDIKAFSTYNE 72 (89)
Q Consensus 44 fLElL~~~~~~~AL~~Lr~eL~pl~~~~~ 72 (89)
-=-+|..|+..+||+..=.. +|++..++
T Consensus 43 vr~lL~~g~~~~ALk~aL~~-pP~~~~~~ 70 (152)
T 3dwl_G 43 ARSAIQTGNALQGLKTLLSY-VPYGNDVQ 70 (152)
T ss_dssp HHHHHHHSCCHHHHHHHTSS-CCCSCSCH
T ss_pred HHHHHHCCCHHHHHHHHHhC-CCCCCChH
Confidence 33478889999999988744 89987754
No 170
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=21.98 E-value=1.2e+02 Score=24.19 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=37.0
Q ss_pred HHHHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhcCCHHHHHHHHHhhc
Q 034603 4 FEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDKHERVKALDILMKDI 64 (89)
Q Consensus 4 fr~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~~~~~~AL~~Lr~eL 64 (89)
.|.++..|||..|...+..+..-. .... +..|+.-+ - +...|+..+|-..+++=.
T Consensus 292 ~r~Alr~~d~~~a~~~~~~l~~~~-~~~~-r~~YW~~r--a--~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 292 VRMALGTGDRRGLNTWLARLPMEA-KEKD-EWRYWQAD--L--LLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHHTCHHHHHHHHHHSCTTG-GGSH-HHHHHHHH--H--HHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHccccc-cccH-hHHHHHHH--H--HHHcCCHHHHHHHHHHHh
Confidence 467888999999999999884422 1223 46677766 2 234588888877777433
No 171
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=21.69 E-value=1e+02 Score=22.58 Aligned_cols=54 Identities=24% Similarity=0.282 Sum_probs=29.4
Q ss_pred ChhHHHHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHHHhc-CCHHHHHHHHH
Q 034603 1 MKHFEDMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEALDK-HERVKALDILM 61 (89)
Q Consensus 1 ~~~fr~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLElL~~-~~~~~AL~~Lr 61 (89)
|+...+.+-+|+-++|++.+..--.....+.. .+--|+++|+- |+.++|+.=|.
T Consensus 1 m~~~~~ll~~g~L~~al~~~~~~VR~~P~da~-------~R~~LfqLLcv~G~w~RA~~QL~ 55 (273)
T 1zbp_A 1 MTQWKNALSEGQLQQALELLIEAIKASPKDAS-------LRSSFIELLCIDGDFERADEQLM 55 (273)
T ss_dssp -CCHHHHTTTTCHHHHHHHHHHHHHTCTTCHH-------HHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CccHHHHHhCCCHHHHHHHHHHHHHhCCcCHH-------HHHHHHHHHHhcCCHHHHHHHHH
Confidence 55666677777777777777653111111111 23345566654 77777766555
No 172
>1gjs_A Immunoglobulin G binding protein G; immunoglobulin-binding protein, bacterial surface protein, albumin binding; NMR {Streptococcus SP} SCOP: a.8.1.2 PDB: 1gjt_A
Probab=21.41 E-value=53 Score=19.25 Aligned_cols=27 Identities=11% Similarity=0.417 Sum_probs=23.3
Q ss_pred hhhhhhHHHHHHhcCCHHHHHHHHHhhc
Q 034603 37 FELRRQKFLEALDKHERVKALDILMKDI 64 (89)
Q Consensus 37 FlI~kQKfLElL~~~~~~~AL~~Lr~eL 64 (89)
+.| ..-|+..+.+.++.+.++.|++||
T Consensus 34 ~GI-sd~y~~~In~AkTvEgV~aLk~Ei 60 (65)
T 1gjs_A 34 YGV-SDYYKNLINNAKTVEGVKALIDEI 60 (65)
T ss_dssp HTC-CHHHHHHHHTCCSHHHHHHHHHHH
T ss_pred cCc-cHHHHHhhhccchHHHHHHHHHHH
Confidence 345 678999999999999999999885
No 173
>1vk8_A Hypothetical protein TM0486; protein with possible role in cell WALL biogenesis, structur genomics, joint center for structural genomics; HET: UNL; 1.80A {Thermotoga maritima} SCOP: d.58.48.1
Probab=21.35 E-value=19 Score=22.76 Aligned_cols=15 Identities=13% Similarity=0.377 Sum_probs=12.8
Q ss_pred hcCCHHHHHHHhccc
Q 034603 9 LAGKLDEAEKYLSGF 23 (89)
Q Consensus 9 l~G~Wd~a~~~L~~l 23 (89)
+.|+||++.+.+...
T Consensus 58 IEGe~devm~vvk~~ 72 (106)
T 1vk8_A 58 VEGEFEEIMDRVKEL 72 (106)
T ss_dssp EEECHHHHHHHHHHH
T ss_pred EEcCHHHHHHHHHHH
Confidence 579999999998866
No 174
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=21.17 E-value=49 Score=21.75 Aligned_cols=23 Identities=26% Similarity=0.348 Sum_probs=19.5
Q ss_pred ChhHHHHHhcCCHHHHHHHhccc
Q 034603 1 MKHFEDMVLAGKLDEAEKYLSGF 23 (89)
Q Consensus 1 ~~~fr~~Vl~G~Wd~a~~~L~~l 23 (89)
|..+...|-+++|.++-.++.+-
T Consensus 37 l~eL~~lI~~~~W~~~Rn~IhGP 59 (130)
T 3zsu_A 37 FADLEVSVAKGDWQEARNIMRGP 59 (130)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTH
T ss_pred HHHHHHHHhhcchHHHHHHHhch
Confidence 35678899999999999999864
No 175
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=20.24 E-value=77 Score=23.82 Aligned_cols=34 Identities=26% Similarity=0.267 Sum_probs=22.7
Q ss_pred HHHhcCCHHHHHHHhcccccccccccccceehhhhhhHHHHH
Q 034603 6 DMVLAGKLDEAEKYLSGFTQVHENMLSTKTYFELRRQKFLEA 47 (89)
Q Consensus 6 ~~Vl~G~Wd~a~~~L~~l~~~~~~~~~~~~~FlI~kQKfLEl 47 (89)
.+|..|+|+.|..+|++= .. -+-|.-+|+-|++.
T Consensus 37 dhvAAGsFetAm~lLnrQ-------vG-ivnf~PLk~~F~~~ 70 (325)
T 3mv2_A 37 VLVAAGAFDAAVQALSKQ-------VG-VVKLEPLKKYFTNI 70 (325)
T ss_dssp HHHHTTCHHHHHHHHHHH-------HC-BCCCGGGHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHH-------hC-ccCchhhHHHHHHH
Confidence 578999999999999863 11 23344455555554
Done!