BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034609
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B0K036|SDHF1_RAT Succinate dehydrogenase assembly factor 1, mitochondrial
OS=Rattus norvegicus GN=Sdhaf1 PE=3 SV=1
Length = 118
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 52/77 (67%), Gaps = 6/77 (7%)
Query: 8 RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
RLS LQ+QVLSLYR LRA R K A E+ V AEFR++++ + R + L IEYL RR
Sbjct: 3 RLSRLQRQVLSLYRELLRAGRGKPGA-----EARVRAEFRQHAS-LPRSDVLRIEYLYRR 56
Query: 68 GKKQLEQLQSPNTESLS 84
G++QL+ L+S + ++
Sbjct: 57 GRRQLQLLRSGHATAMG 73
>sp|A6NFY7|SDHF1_HUMAN Succinate dehydrogenase assembly factor 1, mitochondrial OS=Homo
sapiens GN=SDHAF1 PE=1 SV=1
Length = 115
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 8 RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
R S LQ+QVLSLYR LRA R K A E+ V AEFR+++ + R + L IEYL RR
Sbjct: 3 RHSRLQRQVLSLYRDLLRAGRGKPGA-----EARVRAEFRQHAG-LPRSDVLRIEYLYRR 56
Query: 68 GKKQLEQLQSPNTESLS 84
G++QL+ L+S + ++
Sbjct: 57 GRRQLQLLRSGHATAMG 73
>sp|Q9US02|SDHF1_SCHPO Succinate dehydrogenase assembly factor 1 homolog, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPAC664.12c PE=3 SV=1
Length = 79
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 44/76 (57%), Gaps = 1/76 (1%)
Query: 9 LSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRG 68
LSGLQ+QV+ YR L AA+ K + + V EFR+N + +++F YIE+LLR G
Sbjct: 3 LSGLQRQVIHFYRRCLHAAKAKEQPYNERWMAFVHQEFRKNQT-ISKRDFFYIEHLLRVG 61
Query: 69 KKQLEQLQSPNTESLS 84
++Q E P + +
Sbjct: 62 QRQYEAYSRPEVKDIH 77
>sp|A8PU71|SDHF1_BOVIN Succinate dehydrogenase assembly factor 1, mitochondrial OS=Bos
taurus GN=SDHAF1 PE=3 SV=1
Length = 118
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 36/77 (46%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 8 RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
R S LQ+QVLSLYR LRA R K A E+ V AEFR+++ + R + L IEYL RR
Sbjct: 3 RHSRLQRQVLSLYRELLRAGRGKPGA-----EARVRAEFRQHAC-LPRSDVLRIEYLYRR 56
Query: 68 GKKQLEQLQSPNTESLS 84
G++QL+ L+S + ++
Sbjct: 57 GRRQLQMLRSGHATAMG 73
>sp|Q54HG5|SDHFA_DICDI Succinate dehydrogenase assembly factor 1 homolog A,
mitochondrial OS=Dictyostelium discoideum GN=sdhaf1A
PE=3 SV=1
Length = 91
Score = 57.0 bits (136), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 8 RLSGLQKQVLSLYRGFLRAARCKSAAD-RRQIESIVSAEFRRNSNQVDRKNFLYIEYLLR 66
R SGLQK VLSLYR FLR + K + I + + +FR + + +++ IE LL
Sbjct: 7 RHSGLQKAVLSLYRSFLRVSNKKEMDNPSSSISNYIKTQFRLKATTIQKRDINKIESLLV 66
Query: 67 RGKKQLEQLQSP 78
+GK+QLEQ+Q P
Sbjct: 67 KGKRQLEQIQDP 78
>sp|Q3U276|SDHF1_MOUSE Succinate dehydrogenase assembly factor 1, mitochondrial OS=Mus
musculus GN=Sdhaf1 PE=3 SV=1
Length = 118
Score = 56.2 bits (134), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 50/77 (64%), Gaps = 6/77 (7%)
Query: 8 RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
R S LQ+QVLSLYR LRA R A E+ V AEFR++++ + R + L IEYL RR
Sbjct: 3 RPSRLQRQVLSLYRELLRAGRGTPGA-----EARVRAEFRQHAS-LPRTDVLRIEYLYRR 56
Query: 68 GKKQLEQLQSPNTESLS 84
G++QL+ L+S + ++
Sbjct: 57 GRRQLQLLRSGHATAMG 73
>sp|Q3E785|SDHF1_YEAST Succinate dehydrogenase assembly factor 1 homolog, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=YDR379C-A PE=1 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 8 RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
RLSGLQK+VL LYR +R A K ++ + + EF + N + RK+F IE+LLR
Sbjct: 4 RLSGLQKEVLHLYRASIRTAHTKPKENQVNFVNYIHEEFGKYRN-LPRKDFTTIEHLLRV 62
Query: 68 GKKQLEQLQSP 78
G K++ P
Sbjct: 63 GNKKIATFSHP 73
>sp|A6ZYX9|SDHF1_YEAS7 Succinate dehydrogenase assembly factor 1 homolog, mitochondrial
OS=Saccharomyces cerevisiae (strain YJM789) GN=SCY_1267
PE=3 SV=1
Length = 79
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 8 RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRR 67
RLSGLQK+VL LYR +R A K ++ + + EF + N + RK+F IE+LLR
Sbjct: 4 RLSGLQKEVLHLYRASIRTAHTKPKENQVNFVNYIHEEFGKYRN-LPRKDFTTIEHLLRV 62
Query: 68 GKKQLEQLQSP 78
G K++ P
Sbjct: 63 GNKKIATFSHP 73
>sp|B3DLF3|LYRM2_XENTR LYR motif-containing protein 2 OS=Xenopus tropicalis GN=lyrm2
PE=3 SV=1
Length = 87
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 12 LQKQVLSLYRGFLRAAR-CKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKK 70
+++QVL LYR LR+ R AAD+R ++ EFRRN + + I ++ G++
Sbjct: 17 VRQQVLGLYRKILRSVRQIPDAADQRYMQEWAREEFRRNKGATEE---IAIRMMITHGQR 73
Query: 71 QLEQLQ 76
QL++L+
Sbjct: 74 QLQELE 79
>sp|Q5PQ90|LYRM2_XENLA LYR motif-containing protein 2 OS=Xenopus laevis GN=lyrm2 PE=3
SV=1
Length = 87
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 12 LQKQVLSLYRGFLRAAR-CKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKK 70
+++QVL LYR +RA R AADR+ ++ EFRRN + + I ++ G++
Sbjct: 17 VRQQVLGLYRRIVRAVRQIPGAADRQYLQDWARDEFRRNKGASEE---IAIRMMISHGQR 73
Query: 71 QLEQLQ 76
QL++L+
Sbjct: 74 QLQELE 79
>sp|Q8R033|LYRM2_MOUSE LYR motif-containing protein 2 OS=Mus musculus GN=Lyrm2 PE=2 SV=1
Length = 88
Score = 37.0 bits (84), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 1 MGASRGPRLSGLQKQ------VLSLYRGFLRAAR-CKSAADRRQIESIVSAEFRRNSNQV 53
M ASR P + KQ VL LYR LRA R S +DR+ ++ EF+RN +
Sbjct: 1 MAASRLPPAALTLKQFMRRQQVLLLYRKILRAIRQVPSDSDRKYLQDWAREEFKRNKSAT 60
Query: 54 DRKNFLYIEYLLRRGKKQLEQLQ 76
+ I ++ +G QL++L+
Sbjct: 61 EEDT---IRMMITQGNMQLKELE 80
>sp|Q55BM0|SDHFB_DICDI Succinate dehydrogenase assembly factor 1 homolog B,
mitochondrial OS=Dictyostelium discoideum GN=sdhaf1B
PE=3 SV=1
Length = 111
Score = 36.6 bits (83), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 2/61 (3%)
Query: 16 VLSLY-RGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQ 74
VL LY R A RC ++ +ES + +FR N ++ +K+F IE LL++G+++L+
Sbjct: 13 VLDLYKRCLYSAKRCPKYQNQMMMESYIKLKFRSNK-EIHQKDFETIENLLKQGEEELKS 71
Query: 75 L 75
+
Sbjct: 72 M 72
>sp|B2GV91|LYRM2_RAT LYR motif-containing protein 2 OS=Rattus norvegicus GN=Lyrm2 PE=3
SV=1
Length = 88
Score = 36.2 bits (82), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 42/83 (50%), Gaps = 10/83 (12%)
Query: 1 MGASRGPRLSGLQKQ------VLSLYRGFLRAAR-CKSAADRRQIESIVSAEFRRNSNQV 53
M ASR P + KQ VL LYR LRA + S +DR+ ++ EF+RN +
Sbjct: 1 MAASRLPPATLTLKQFMRRQQVLLLYRKILRAIKQIPSDSDRKYLQDWAREEFKRNKSAT 60
Query: 54 DRKNFLYIEYLLRRGKKQLEQLQ 76
+ I ++ +G QL++L+
Sbjct: 61 EEDT---IRMMITQGNMQLKELE 80
>sp|B5XFA7|LYRM2_SALSA LYR motif-containing protein 2 OS=Salmo salar GN=lyrm2 PE=3 SV=1
Length = 90
Score = 32.7 bits (73), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 10/84 (11%)
Query: 1 MGASRGPRLSGLQKQ------VLSLYRGFLRAAR-CKSAADRRQIESIVSAEFRRNSNQV 53
M +SR P + KQ VLSLYR +R R DR+ + EF+RN N
Sbjct: 1 MASSRLPASALTLKQFIQRQKVLSLYRNMMRTIRQVPDEGDRKYLRDWARDEFKRNKNST 60
Query: 54 DRKNFLYIEYLLRRGKKQLEQLQS 77
++ I ++ + ++LQS
Sbjct: 61 NQD---AIRMMITQANMHHDELQS 81
>sp|E2JF22|PIEZ1_MOUSE Piezo-type mechanosensitive ion channel component 1 OS=Mus musculus
GN=Piezo1 PE=2 SV=1
Length = 2547
Score = 32.3 bits (72), Expect = 1.00, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Query: 12 LQKQVLSLYRGF--LRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGK 69
L+ L RGF AA KS RQIE A+ +R ++ K Y + RG+
Sbjct: 1309 LKATALQASRGFALYNAANLKSINFHRQIEEKSLAQLKRQMKRIRAKQEKYRQSQASRGQ 1368
Query: 70 KQLEQLQSPNTE 81
Q + Q P+ E
Sbjct: 1369 LQSKDPQDPSQE 1380
>sp|Q5RIM0|LYRM2_DANRE LYR motif-containing protein 2 OS=Danio rerio GN=lyrm2 PE=3 SV=1
Length = 88
Score = 30.0 bits (66), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 10/82 (12%)
Query: 1 MGASRGPRLS-----GLQKQ-VLSLYRGFLRAAR-CKSAADRRQIESIVSAEFRRNSNQV 53
M SR P + LQ+Q VL LYR R R +DR+ + EFRRN +
Sbjct: 1 MAVSRLPPAALSLKQFLQRQKVLCLYRDLQRTIRRVPHESDRKYLRDWARDEFRRNKSNT 60
Query: 54 DRKNFLYIEYLLRRGKKQLEQL 75
D+ I ++ + LE+L
Sbjct: 61 DQDA---IRMMISQAHNHLEEL 79
>sp|Q9GPS1|LYRM7_DICDI LYR motif-containing protein 7 OS=Dictyostelium discoideum
GN=lyrm7 PE=3 SV=1
Length = 140
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
Query: 15 QVLSLYRGFLRAARCKSAADRRQIESIVS---AEFRRNSNQVD 54
+VLS Y G LR + D+R +E +++ +FR N N+ D
Sbjct: 5 KVLSSYLGLLRTEKKVFQNDKRALEHVINLTRVQFRDNKNETD 47
>sp|B2VEI4|ISPE_ERWT9 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase OS=Erwinia
tasmaniensis (strain DSM 17950 / Et1/99) GN=ispE PE=3
SV=1
Length = 285
Score = 29.6 bits (65), Expect = 6.0, Method: Composition-based stats.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 35 RRQIESIVSAEFRRNSNQVDRKNFLYIEYLL 65
RR+I +++SAEFR + V R F +E L+
Sbjct: 196 RREISALLSAEFRNDCEAVVRNRFREVEQLV 226
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.130 0.346
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,627,390
Number of Sequences: 539616
Number of extensions: 710385
Number of successful extensions: 2107
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 2087
Number of HSP's gapped (non-prelim): 22
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)