Query 034609
Match_columns 89
No_of_seqs 100 out of 385
Neff 6.0
Searched_HMMs 29240
Date Mon Mar 25 07:10:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1a6f_A RNAse P protein, ribonu 66.5 12 0.00039 23.6 4.7 48 32-79 57-117 (119)
2 2ke4_A CDC42-interacting prote 47.7 43 0.0015 20.6 4.9 60 8-76 16-75 (98)
3 1d6t_A Ribonuclease P, RNAse P 47.0 20 0.00068 22.3 3.3 22 32-53 56-77 (117)
4 2ljp_A Ribonuclease P protein 42.3 17 0.00057 22.7 2.4 42 32-73 59-113 (119)
5 1nz0_A Ribonuclease P protein 40.0 27 0.00094 21.6 3.2 23 32-54 58-80 (118)
6 1xl3_C Protein type A, secreti 39.9 57 0.002 20.2 4.5 33 13-46 39-77 (92)
7 2ld7_A Histone deacetylase com 38.3 31 0.0011 21.3 3.1 59 7-70 22-80 (94)
8 1vyk_A Oxygen-evolving enhance 30.7 1.2E+02 0.004 20.1 8.3 61 11-75 77-144 (149)
9 4b6x_A AVRRPS4, avirulence pro 30.1 57 0.002 19.9 3.3 41 36-79 35-78 (90)
10 2l0e_A Sodium/hydrogen exchang 19.4 65 0.0022 16.0 1.7 15 53-67 13-27 (33)
No 1
>1a6f_A RNAse P protein, ribonuclease P protein; endonuclease, subunit; 2.60A {Bacillus subtilis} SCOP: d.14.1.2
Probab=66.53 E-value=12 Score=23.57 Aligned_cols=48 Identities=10% Similarity=0.178 Sum_probs=34.1
Q ss_pred hHhHHHHHHHHHHHHHhhcCCCC-------------cCCHHHHHHHHHHHHHHHHHhhCCc
Q 034609 32 AADRRQIESIVSAEFRRNSNQVD-------------RKNFLYIEYLLRRGKKQLEQLQSPN 79 (89)
Q Consensus 32 ~~~R~y~~~~iR~eFr~~~~~~~-------------~~D~~~Ie~ll~~g~~~Le~i~~~~ 79 (89)
...|+.+++.+|+.||.+...++ ..|.+.++.-+...-..+..++.++
T Consensus 57 AV~RNRiKR~lRE~~R~~~~~l~~~d~Vviar~~~~~~~~~~l~~~l~~ll~k~~~~~~~~ 117 (119)
T 1a6f_A 57 AVMRNRIKRLIRQAFLEEKERLKEKDYIIIARKPASQLTYEETKKSLQHLFRKSSLYKKSS 117 (119)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTBCSSEEEEEECGGGTTCCHHHHHHHHHHHHHHTTCBC---
T ss_pred chhHhHHHHHHHHHHHHhhccCCCCCEEEEEECCcccCCHHHHHHHHHHHHHHhcCccccc
Confidence 57899999999999998866542 2467777777777777766665443
No 2
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=47.69 E-value=43 Score=20.65 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=45.0
Q ss_pred CchhhHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHhhcCCCCcCCHHHHHHHHHHHHHHHHHhh
Q 034609 8 RLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQ 76 (89)
Q Consensus 8 r~s~lq~~VLsLYR~~LR~ar~~p~~~R~y~~~~iR~eFr~~~~~~~~~D~~~Ie~ll~~g~~~Le~i~ 76 (89)
|.+.|++.|-.|=+.+-++.+.. ..+......|.+|... -|+..++..|......|+.++
T Consensus 16 RkkkL~~Ki~el~~ei~ke~~~r------egl~Km~~vY~~nP~~---GD~~s~~~~L~e~~~kid~L~ 75 (98)
T 2ke4_A 16 QRKRLQQQLEERSRELQKEVDQR------EALKKMKDVYEKTPQM---GDPASLEPQIAETLSNIERLK 75 (98)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH------THHHHHHHHHHHCGGG---CCGGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHcCCcc---CCHHHHHHHHHHHHHHHHHHH
Confidence 55667777777777776666552 3456778889788877 899999999999888888765
No 3
>1d6t_A Ribonuclease P, RNAse P protein; endonuclease, subunit, hydrolase; NMR {Staphylococcus aureus} SCOP: d.14.1.2
Probab=46.96 E-value=20 Score=22.31 Aligned_cols=22 Identities=18% Similarity=0.413 Sum_probs=19.0
Q ss_pred hHhHHHHHHHHHHHHHhhcCCC
Q 034609 32 AADRRQIESIVSAEFRRNSNQV 53 (89)
Q Consensus 32 ~~~R~y~~~~iR~eFr~~~~~~ 53 (89)
...|+.+++.+|+.||.+...+
T Consensus 56 AV~RNRiKR~lRE~~R~~~~~l 77 (117)
T 1d6t_A 56 AVLRNKIKRAIRENFKVHKSHI 77 (117)
T ss_dssp TTHHHHHHHHHHHHHHHGGGTC
T ss_pred chHHhHHHHHHHHHHHHhhccC
Confidence 5789999999999999887655
No 4
>2ljp_A Ribonuclease P protein component; rnasep, ribozyme, hydrolase; NMR {Escherichia coli}
Probab=42.33 E-value=17 Score=22.72 Aligned_cols=42 Identities=14% Similarity=0.178 Sum_probs=29.5
Q ss_pred hHhHHHHHHHHHHHHHhhcCCCCc-------------CCHHHHHHHHHHHHHHHH
Q 034609 32 AADRRQIESIVSAEFRRNSNQVDR-------------KNFLYIEYLLRRGKKQLE 73 (89)
Q Consensus 32 ~~~R~y~~~~iR~eFr~~~~~~~~-------------~D~~~Ie~ll~~g~~~Le 73 (89)
...|+.+++.+|+.||.+...++. .|.+.++.-+...-..+.
T Consensus 59 AV~RNRiKR~lRe~~R~~~~~l~~~d~Vviar~~~~~~~~~~l~~~l~~ll~~~~ 113 (119)
T 2ljp_A 59 AHERNRIKRLTRESFRLRQHELPAMDFVVVAKKGVADLDNRALSEALEKLWRRHC 113 (119)
T ss_dssp HHHHHHHHHHHHHHHTTCTTTSCSSEECEEECTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHHHHhcCCCceEEEEEcCCcccCCHHHHHHHHHHHHHHHH
Confidence 578999999999999988665432 456666666655554443
No 5
>1nz0_A Ribonuclease P protein component; endonuclease, RNAse, ALFA-beta sandwich, dimer, structural genomics, BSGC structure funded by NIH; HET: MSE; 1.20A {Thermotoga maritima} SCOP: d.14.1.2 PDB: 3ok7_A 3okb_A 3q1q_A 3q1r_A
Probab=40.00 E-value=27 Score=21.64 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.9
Q ss_pred hHhHHHHHHHHHHHHHhhcCCCC
Q 034609 32 AADRRQIESIVSAEFRRNSNQVD 54 (89)
Q Consensus 32 ~~~R~y~~~~iR~eFr~~~~~~~ 54 (89)
...|+.+++.+|+.||.+...++
T Consensus 58 AV~RNRiKR~lRE~~R~~~~~l~ 80 (118)
T 1nz0_A 58 ATRRNKLKRWVREIFRRNKGVIP 80 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSC
T ss_pred hhHHhHHHHHHHHHHHHHHhhcC
Confidence 57899999999999999977663
No 6
>1xl3_C Protein type A, secretion control protein; YOPN, TYEA, type III secretion, cell invasion; HET: MLY; 2.20A {Yersinia pestis} SCOP: a.243.1.1
Probab=39.86 E-value=57 Score=20.15 Aligned_cols=33 Identities=12% Similarity=0.280 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHhcCC------hHhHHHHHHHHHHHH
Q 034609 13 QKQVLSLYRGFLRAARCKS------AADRRQIESIVSAEF 46 (89)
Q Consensus 13 q~~VLsLYR~~LR~ar~~p------~~~R~y~~~~iR~eF 46 (89)
..+ +.+|+.+++..|.+| .+.|..+..-++..-
T Consensus 39 e~q-I~Flqel~~l~R~iP~~vf~d~e~R~~lL~a~Q~Al 77 (92)
T 1xl3_C 39 EIX-VRFYQDLXRMFRLFPLGVFSDEEQRQNLLQMCQNAI 77 (92)
T ss_dssp HHH-HHHHHHHHHHHHTSCGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHCCHHhcCCHHHHHHHHHHHHHHH
Confidence 344 458888888888888 466777766666555
No 7
>2ld7_A Histone deacetylase complex subunit SAP30; transcription; NMR {Mus musculus}
Probab=38.30 E-value=31 Score=21.33 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=42.8
Q ss_pred CCchhhHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHhhcCCCCcCCHHHHHHHHHHHHH
Q 034609 7 PRLSGLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKK 70 (89)
Q Consensus 7 ~r~s~lq~~VLsLYR~~LR~ar~~p~~~R~y~~~~iR~eFr~~~~~~~~~D~~~Ie~ll~~g~~ 70 (89)
.-.+.|.-.+|.=|+...+. ..-|...+..+...|+.-| ... .| ..-+.|-..|-..+.
T Consensus 22 vdf~kL~~~tLrrY~r~y~L-~~~~~~sK~qLa~aV~kHF-~s~-~V--dE~evI~~Fly~VK~ 80 (94)
T 2ld7_A 22 VDLYQLQVNTLRRYKRHFKL-PTRPGLNKAQLVEIVGCHF-KSI-PV--NEKDTLTCFIYSVRN 80 (94)
T ss_dssp CCCSSSCHHHHHHHHHHTTC-CCCSSCCHHHHHHHHHHHH-TTC-CC--CHHHHHHHHHHHHHH
T ss_pred cCHHHCCHHHHHHHHHHhCC-CCCCCCCHHHHHHHHHHHH-HcC-CC--CHHHHHHHHHHHHHh
Confidence 34677888999999998877 3333468889999999999 444 34 446777777766554
No 8
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=30.68 E-value=1.2e+02 Score=20.08 Aligned_cols=61 Identities=11% Similarity=0.160 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHhh-------cCCCCcCCHHHHHHHHHHHHHHHHHh
Q 034609 11 GLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRN-------SNQVDRKNFLYIEYLLRRGKKQLEQL 75 (89)
Q Consensus 11 ~lq~~VLsLYR~~LR~ar~~p~~~R~y~~~~iR~eFr~~-------~~~~~~~D~~~Ie~ll~~g~~~Le~i 75 (89)
-|+..+=-||..+...+..+|++.|..++.-++.-| .+ .+. .|....+..+.+....|..+
T Consensus 77 ~LR~~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf-~~le~LD~AAr~---kd~~~a~~~Y~~t~~~ld~v 144 (149)
T 1vyk_A 77 DLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLF-SSIDNLDHAAKI---KSPTEAEKYYGQTVSNINEV 144 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHH-HHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHH
Confidence 456667789999999999999999999888888887 43 333 77888888888887777654
No 9
>4b6x_A AVRRPS4, avirulence protein; toxin, type 3 secreted effector; 2.20A {Pseudomonas syringae PV}
Probab=30.11 E-value=57 Score=19.95 Aligned_cols=41 Identities=20% Similarity=0.223 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHhhcCCCCcCCHHHH---HHHHHHHHHHHHHhhCCc
Q 034609 36 RQIESIVSAEFRRNSNQVDRKNFLYI---EYLLRRGKKQLEQLQSPN 79 (89)
Q Consensus 36 ~y~~~~iR~eFr~~~~~~~~~D~~~I---e~ll~~g~~~Le~i~~~~ 79 (89)
.-++.-+++|..+...+ .+|..| +.+|+++..+|..+.++.
T Consensus 35 Q~~i~~Lt~eLq~A~~e---aNpaeIA~~~~~L~qAraDL~~l~r~~ 78 (90)
T 4b6x_A 35 QLMVNNLTDELQDAIDE---ANPAEIANTSQQLRHARADLADLQRRF 78 (90)
T ss_dssp HHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHc---cCHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 34556678888666656 566655 679999999999887753
No 10
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=19.36 E-value=65 Score=15.99 Aligned_cols=15 Identities=0% Similarity=0.047 Sum_probs=12.0
Q ss_pred CCcCCHHHHHHHHHH
Q 034609 53 VDRKNFLYIEYLLRR 67 (89)
Q Consensus 53 ~~~~D~~~Ie~ll~~ 67 (89)
++++||.++-..+++
T Consensus 13 is~TDpVavlaif~~ 27 (33)
T 2l0e_A 13 ISAVDPVAVLAVFEE 27 (33)
T ss_dssp HTTCCHHHHHHHHHH
T ss_pred ccCCChHHHHHHHHH
Confidence 467999998888765
Done!