Query 034609
Match_columns 89
No_of_seqs 100 out of 385
Neff 6.0
Searched_HMMs 13730
Date Mon Mar 25 07:10:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034609.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034609hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1a6fa_ d.14.1.2 (A:) RNase P 64.9 6.2 0.00045 22.9 4.7 44 32-75 56-112 (113)
2 d1d6ta_ d.14.1.2 (A:) RNase P 47.1 9.4 0.00068 22.1 3.3 23 32-54 56-78 (117)
3 d1xl3c1 a.243.1.1 (C:2-92) Tye 41.4 25 0.0018 20.3 4.5 30 17-46 41-76 (91)
4 d1nz0a_ d.14.1.2 (A:) RNase P 39.7 13 0.00098 21.1 3.2 23 32-54 49-71 (109)
5 d2f1ka1 a.100.1.12 (A:166-279) 34.7 18 0.0013 21.0 3.2 51 20-70 47-107 (114)
6 d1nzea_ a.24.18.1 (A:) Oxygen- 32.4 43 0.0031 19.4 8.4 64 11-75 40-107 (112)
7 d2hh6a1 a.69.4.1 (A:1-112) Unc 31.8 47 0.0034 19.6 6.7 57 18-78 15-71 (112)
8 d1ussa_ a.4.5.13 (A:) Histone 26.7 46 0.0034 18.4 4.0 47 20-71 10-60 (88)
9 d1mpga2 d.129.1.2 (A:1-99) 3-M 22.3 58 0.0042 18.4 3.9 26 35-66 71-96 (99)
10 d1v93a_ c.1.23.1 (A:) Methylen 19.0 66 0.0048 21.0 4.1 33 56-88 241-274 (292)
No 1
>d1a6fa_ d.14.1.2 (A:) RNase P protein {Bacillus subtilis [TaxId: 1423]}
Probab=64.86 E-value=6.2 Score=22.85 Aligned_cols=44 Identities=11% Similarity=0.172 Sum_probs=31.1
Q ss_pred hHhHHHHHHHHHHHHHhhcCCC-------------CcCCHHHHHHHHHHHHHHHHHh
Q 034609 32 AADRRQIESIVSAEFRRNSNQV-------------DRKNFLYIEYLLRRGKKQLEQL 75 (89)
Q Consensus 32 ~~~R~y~~~~iR~eFr~~~~~~-------------~~~D~~~Ie~ll~~g~~~Le~i 75 (89)
...|+.+++.+|+.||.+...+ ...|.+.|+.-+...-+.+.++
T Consensus 56 AV~RNriKR~lRe~~r~~~~~~~~~d~Vvi~~~~~~~~~~~~l~~~l~~ll~k~~l~ 112 (113)
T d1a6fa_ 56 AVMRNRIKRLIRQAFLEEKERLKEKDYIIIARKPASQLTYEETKKSLQHLFRKSSLY 112 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTBCSSEEEEEECGGGTTCCHHHHHHHHHHHHHHTTCB
T ss_pred hHHHHHHHHHHHHHHHHhhccCCCCeEEEEEeCCcCcCCHHHHHHHHHHHHHHhccC
Confidence 4789999999999999886543 2346677777666666555444
No 2
>d1d6ta_ d.14.1.2 (A:) RNase P protein {Staphylococcus aureus [TaxId: 1280]}
Probab=47.09 E-value=9.4 Score=22.14 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=19.0
Q ss_pred hHhHHHHHHHHHHHHHhhcCCCC
Q 034609 32 AADRRQIESIVSAEFRRNSNQVD 54 (89)
Q Consensus 32 ~~~R~y~~~~iR~eFr~~~~~~~ 54 (89)
...|+.+++.+|+.||.+...++
T Consensus 56 AV~RNriKR~lRe~~R~~~~~~~ 78 (117)
T d1d6ta_ 56 AVLRNKIKRAIRENFKVHKSHIL 78 (117)
T ss_dssp TTHHHHHHHHHHHHHHHGGGTCC
T ss_pred hHHHHHHHHHHHHHHHhhhccCC
Confidence 47899999999999998875543
No 3
>d1xl3c1 a.243.1.1 (C:2-92) TyeA {Yersinia pestis [TaxId: 632]}
Probab=41.44 E-value=25 Score=20.30 Aligned_cols=30 Identities=13% Similarity=0.294 Sum_probs=22.7
Q ss_pred HHHHHHHHHHHhcCC------hHhHHHHHHHHHHHH
Q 034609 17 LSLYRGFLRAARCKS------AADRRQIESIVSAEF 46 (89)
Q Consensus 17 LsLYR~~LR~ar~~p------~~~R~y~~~~iR~eF 46 (89)
+.+|+.+.+..|.+| ++.|..+..-+++.-
T Consensus 41 I~F~~El~~l~R~iP~~~f~d~e~R~~lL~a~Q~AL 76 (91)
T d1xl3c1 41 VRFYQDLKRMFRLFPLGVFSDEEQRQNLLQMCQNAI 76 (91)
T ss_dssp HHHHHHHHHHHHTSCGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCHHhcCCHHHHHHHHHHHHHHH
Confidence 568888888888888 466777777776665
No 4
>d1nz0a_ d.14.1.2 (A:) RNase P protein {Thermotoga maritima [TaxId: 2336]}
Probab=39.70 E-value=13 Score=21.12 Aligned_cols=23 Identities=30% Similarity=0.484 Sum_probs=19.7
Q ss_pred hHhHHHHHHHHHHHHHhhcCCCC
Q 034609 32 AADRRQIESIVSAEFRRNSNQVD 54 (89)
Q Consensus 32 ~~~R~y~~~~iR~eFr~~~~~~~ 54 (89)
...|+.+++.+|+.||.+...++
T Consensus 49 AV~RNriKR~lRe~~r~~~~~l~ 71 (109)
T d1nz0a_ 49 ATRRNKLKRWVREIFRRNKGVIP 71 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHhhCC
Confidence 47899999999999999876664
No 5
>d2f1ka1 a.100.1.12 (A:166-279) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]}
Probab=34.72 E-value=18 Score=21.02 Aligned_cols=51 Identities=10% Similarity=0.190 Sum_probs=31.7
Q ss_pred HHHHHHHHhcCC-------hHhHHHHHHHH---HHHHHhhcCCCCcCCHHHHHHHHHHHHH
Q 034609 20 YRGFLRAARCKS-------AADRRQIESIV---SAEFRRNSNQVDRKNFLYIEYLLRRGKK 70 (89)
Q Consensus 20 YR~~LR~ar~~p-------~~~R~y~~~~i---R~eFr~~~~~~~~~D~~~Ie~ll~~g~~ 70 (89)
||.+.|.|..=| ...+.++...+ ..+..+-+..|...|.+.+..+|.+|+.
T Consensus 47 frD~tRiA~s~p~mW~dI~~~N~~~i~~~l~~~~~~L~~l~~~l~~~d~~~l~~~l~~a~~ 107 (114)
T d2f1ka1 47 FRDTSRVGGGNPELGTMMATYNQRALLKSLQDYRQHLDQLITLISNQQWPELHRLLQQTNG 107 (114)
T ss_dssp HHHHHTGGGSCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 788888887777 34455544433 3333222333444788899999988875
No 6
>d1nzea_ a.24.18.1 (A:) Oxygen-evolving enhancer protein 3, {Spinach (Spinacia oleracea) [TaxId: 3562]}
Probab=32.39 E-value=43 Score=19.37 Aligned_cols=64 Identities=11% Similarity=0.158 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHHHHHHhcCChHhHHHHHHHHHHHHHhhcCCC----CcCCHHHHHHHHHHHHHHHHHh
Q 034609 11 GLQKQVLSLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQV----DRKNFLYIEYLLRRGKKQLEQL 75 (89)
Q Consensus 11 ~lq~~VLsLYR~~LR~ar~~p~~~R~y~~~~iR~eFr~~~~~~----~~~D~~~Ie~ll~~g~~~Le~i 75 (89)
-|+..+=-|+..+...+..+|++.+..++.-...-| .+-..+ ...|....+..+......|+.+
T Consensus 40 ~Lr~~~~~Lr~dl~~li~~~~~~~k~~~~~la~~lf-~~le~LD~Aar~kd~~~a~~~Y~~t~~~ld~~ 107 (112)
T d1nzea_ 40 DLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLF-SSIDNLDHAAKIKSPTEAEKYYGQTVSNINEV 107 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHH-HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHhhhHHHHHHHHHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 456666678999999999999999998888887777 442111 1267777777777777777654
No 7
>d2hh6a1 a.69.4.1 (A:1-112) Uncharacterized protein BH3980 {Bacillus halodurans [TaxId: 86665]}
Probab=31.78 E-value=47 Score=19.57 Aligned_cols=57 Identities=5% Similarity=0.045 Sum_probs=40.9
Q ss_pred HHHHHHHHHHhcCChHhHHHHHHHHHHHHHhhcCCCCcCCHHHHHHHHHHHHHHHHHhhCC
Q 034609 18 SLYRGFLRAARCKSAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQLEQLQSP 78 (89)
Q Consensus 18 sLYR~~LR~ar~~p~~~R~y~~~~iR~eFr~~~~~~~~~D~~~Ie~ll~~g~~~Le~i~~~ 78 (89)
.=||++---+..+|++++.++..-.+.-| ..... +|-..++.+|..-...|+.-...
T Consensus 15 ke~k~~~~R~k~Lp~dy~~~y~~I~~Yl~-~~s~~---~~~~~~~~il~~Il~l~eea~~~ 71 (112)
T d2hh6a1 15 REWKAMEARAKALPKEYHHAYKAIQKYMW-TSGGP---TDWQDTKRIFGGILDLFEEGAAE 71 (112)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHHHHS-STTSB---CSHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHH-HccCC---cchHHHHHHHHHHHHHHHHHHHc
Confidence 34888888889999999988877666666 33333 77777888887777766665444
No 8
>d1ussa_ a.4.5.13 (A:) Histone H1 homologue Hho1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=26.71 E-value=46 Score=18.42 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=26.9
Q ss_pred HHHHHHHH-hcC---ChHhHHHHHHHHHHHHHhhcCCCCcCCHHHHHHHHHHHHHH
Q 034609 20 YRGFLRAA-RCK---SAADRRQIESIVSAEFRRNSNQVDRKNFLYIEYLLRRGKKQ 71 (89)
Q Consensus 20 YR~~LR~a-r~~---p~~~R~y~~~~iR~eFr~~~~~~~~~D~~~Ie~ll~~g~~~ 71 (89)
|.+|+-+| ..+ ....+.-+..||.+.|. ++..++.....+|+.+.+.
T Consensus 10 y~~MI~eAI~~L~er~GsS~~aI~KyI~~~y~-----~~~~~~~~f~~~l~~aLk~ 60 (88)
T d1ussa_ 10 YKEMILKSMPQLNDGKGSSRIVLKKYVKDTFS-----SKLKTSSNFDYLFNSAIKK 60 (88)
T ss_dssp HHHHHHHHHHHSCCTTSBCHHHHHHHHHHHTT-----TTSCCSSTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCC-----ccccchHhHHHHHHHHHHH
Confidence 55666555 222 25788889999999882 2113344444555554443
No 9
>d1mpga2 d.129.1.2 (A:1-99) 3-Methyladenine DNA glycosylase II (gene alkA or aidA) {Escherichia coli [TaxId: 562]}
Probab=22.26 E-value=58 Score=18.39 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCcCCHHHHHHHHH
Q 034609 35 RRQIESIVSAEFRRNSNQVDRKNFLYIEYLLR 66 (89)
Q Consensus 35 R~y~~~~iR~eFr~~~~~~~~~D~~~Ie~ll~ 66 (89)
-..+..+||.-| .++ .||..|+..|.
T Consensus 71 l~~~v~rvRrlf-----DLd-aDp~~I~~~L~ 96 (99)
T d1mpga2 71 AAECLAKMSRLF-----DLQ-CNPQIVNGALG 96 (99)
T ss_dssp HHHHHHHHHHHH-----TTT-CCHHHHHHHHG
T ss_pred HHHHHHHHHHHh-----cCC-CCHHHHHHHHH
Confidence 356789999999 443 89999998874
No 10
>d1v93a_ c.1.23.1 (A:) Methylenetetrahydrofolate reductase {Thermus thermophilus [TaxId: 274]}
Probab=19.03 E-value=66 Score=21.02 Aligned_cols=33 Identities=12% Similarity=0.099 Sum_probs=24.8
Q ss_pred CCHHHH-HHHHHHHHHHHHHhhCCcccccccccc
Q 034609 56 KNFLYI-EYLLRRGKKQLEQLQSPNTESLSQTKQ 88 (89)
Q Consensus 56 ~D~~~I-e~ll~~g~~~Le~i~~~~v~~~~~~~~ 88 (89)
.|++.+ +.-+..+.++++.+...+|.++|.+|-
T Consensus 241 ~~~~~~~~~gi~~a~~~~~~L~~~gv~GiH~~t~ 274 (292)
T d1v93a_ 241 DDPKAVLEIGVEHAVRQVAELLEAGVEGVHFYTL 274 (292)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHTTCSEEEEECT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEeCC
Confidence 456654 346777788888877789999999874
Done!