BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034611
(89 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CI9|A Chain A, Crystal Structure Of The Human Hsbp1
pdb|3CI9|B Chain B, Crystal Structure Of The Human Hsbp1
Length = 48
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/48 (54%), Positives = 38/48 (79%), Gaps = 1/48 (2%)
Query: 9 PKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI 56
PK + D+T VQ LLQQMQ +FQT+SD I+ +ID+M +RI++LE++I
Sbjct: 1 PK-TVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNI 47
>pdb|2WZ1|A Chain A, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3.
pdb|2WZ1|B Chain B, Structure Of The Catalytic Domain Of Human Soluble
Guanylate Cyclase 1 Beta 3
Length = 219
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 18/74 (24%), Positives = 34/74 (45%), Gaps = 17/74 (22%)
Query: 3 GHDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDS----IVTKIDEMGNRINELEQSIND 58
G ++ K ++ + + + NLL + +RF T++DS V K++ +G++
Sbjct: 22 GFNAFCSKHASGEGAMKIVNLLNDLYTRFDTLTDSRKNPFVYKVETVGDKY--------- 72
Query: 59 LRAEMGVEGSPSPL 72
M V G P P
Sbjct: 73 ----MTVSGLPEPC 82
>pdb|1WGF|A Chain A, Solution Structure Of The 4th Hmg-Box Of Mouse Ubf1
Length = 90
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 6 SEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTK-IDEMGNRINELEQSINDLR 60
SE PK+ + M +F + +Q+Q +S+S +T+ + M N ++E +++ R
Sbjct: 18 SEKPKRPVSAMFIFSEEKRRQLQEERPELSESELTRLLARMWNDLSEKKKAKYKAR 73
>pdb|2C9I|A Chain A, Structure Of The Fluorescent Protein Asfp499 From
Anemonia Sulcata
pdb|2C9I|B Chain B, Structure Of The Fluorescent Protein Asfp499 From
Anemonia Sulcata
pdb|2C9I|C Chain C, Structure Of The Fluorescent Protein Asfp499 From
Anemonia Sulcata
pdb|2C9I|D Chain D, Structure Of The Fluorescent Protein Asfp499 From
Anemonia Sulcata
pdb|2C9I|E Chain E, Structure Of The Fluorescent Protein Asfp499 From
Anemonia Sulcata
pdb|2C9I|F Chain F, Structure Of The Fluorescent Protein Asfp499 From
Anemonia Sulcata
pdb|2C9I|G Chain G, Structure Of The Fluorescent Protein Asfp499 From
Anemonia Sulcata
pdb|2C9I|H Chain H, Structure Of The Fluorescent Protein Asfp499 From
Anemonia Sulcata
Length = 226
Score = 25.8 bits (55), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 59 LRAEMGVEGSPSPLTPSKTNSGEGKPEEGS 88
+R ++ +EGS + T GEGKP EG+
Sbjct: 9 MRVQLSMEGSVNYHAFKCTGKGEGKPYEGT 38
>pdb|3BT6|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin
Length = 169
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 42 IDEMGNRINELEQSINDLRAE 62
+DE+ N I EL++ ++DLRA+
Sbjct: 70 MDELHNEILELDEKVDDLRAD 90
>pdb|2RFT|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lsta Receptor Analog
pdb|2RFU|B Chain B, Crystal Structure Of Influenza B Virus Hemagglutinin In
Complex With Lstc Receptor Analog
Length = 176
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 42 IDEMGNRINELEQSINDLRAE 62
+DE+ N I EL++ ++DLRA+
Sbjct: 70 MDELHNEILELDEKVDDLRAD 90
>pdb|4FQK|B Chain B, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059
COMPLEX
pdb|4FQK|D Chain D, Influenza BBRISBANE602008 HEMAGGLUTININ FAB CR8059
COMPLEX
pdb|4FQM|B Chain B, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|D Chain D, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|F Chain F, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|H Chain H, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|J Chain J, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
pdb|4FQM|L Chain L, Structure Of BBRISBANE602008 INFLUENZA HEMAGGLUTININ
Length = 179
Score = 25.8 bits (55), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 17/21 (80%)
Query: 42 IDEMGNRINELEQSINDLRAE 62
+DE+ N I EL++ ++DLRA+
Sbjct: 70 MDELHNEILELDEKVDDLRAD 90
>pdb|3OQ3|A Chain A, Structural Basis Of Type-I Interferon Sequestration By A
Poxvirus Decoy Receptor
Length = 166
Score = 25.4 bits (54), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 27/51 (52%), Gaps = 4/51 (7%)
Query: 23 LLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA----EMGVEGSP 69
L QQ+ + F + S + + NE+ Q +NDL+A ++GV+ SP
Sbjct: 60 LTQQVLNIFTSKDSSAAWNATLLDSFCNEVHQQLNDLKACVMQQVGVQESP 110
>pdb|3UX9|A Chain A, Structural Insights Into A Human Anti-Ifn Antibody
Exerting Therapeutic Potential For Systemic Lupus
Erythematosus
pdb|3UX9|C Chain C, Structural Insights Into A Human Anti-Ifn Antibody
Exerting Therapeutic Potential For Systemic Lupus
Erythematosus
Length = 169
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 1 MDGHDSEDPKQ-------STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELE 53
MD HD P++ A + L+QQ+ + F T S D + EL
Sbjct: 34 MDRHDFGFPQEEFDGNQFQKAPAISVLHELIQQIFNLFTTKDSSAAWDEDLLDKFCTELY 93
Query: 54 QSINDLRA 61
Q +NDL A
Sbjct: 94 QQLNDLEA 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.304 0.123 0.326
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,586,197
Number of Sequences: 62578
Number of extensions: 82810
Number of successful extensions: 173
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 162
Number of HSP's gapped (non-prelim): 15
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (21.9 bits)
S2: 45 (21.9 bits)