Query 034611
Match_columns 89
No_of_seqs 108 out of 150
Neff 3.4
Searched_HMMs 46136
Date Fri Mar 29 04:39:06 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034611.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034611hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4117 Heat shock factor bind 100.0 2.3E-32 5.1E-37 179.5 8.7 65 5-70 7-71 (73)
2 PF06825 HSBP1: Heat shock fac 100.0 5.2E-30 1.1E-34 160.3 5.4 54 13-66 1-54 (54)
3 COG3937 Uncharacterized conser 95.1 0.16 3.4E-06 36.0 7.3 53 10-62 38-105 (108)
4 PF10393 Matrilin_ccoil: Trime 93.4 0.35 7.5E-06 29.6 5.3 19 38-56 28-46 (47)
5 PF01601 Corona_S2: Coronaviru 92.1 0.21 4.5E-06 43.9 4.1 35 17-55 286-320 (610)
6 PF05597 Phasin: Poly(hydroxya 91.4 1.5 3.2E-05 31.4 7.2 47 15-61 76-130 (132)
7 PF06705 SF-assemblin: SF-asse 91.1 1.5 3.3E-05 32.9 7.4 46 17-62 69-114 (247)
8 TIGR01834 PHA_synth_III_E poly 91.1 1.3 2.9E-05 36.0 7.5 42 23-64 264-313 (320)
9 PF10046 BLOC1_2: Biogenesis o 90.3 2.5 5.4E-05 28.2 7.2 45 14-59 41-85 (99)
10 TIGR01837 PHA_granule_1 poly(h 89.5 3 6.5E-05 28.8 7.3 19 42-60 98-116 (118)
11 PF14261 DUF4351: Domain of un 87.5 0.6 1.3E-05 29.1 2.5 40 19-60 8-47 (59)
12 PF15070 GOLGA2L5: Putative go 87.4 4.8 0.00011 35.1 8.7 54 18-71 15-74 (617)
13 PF07304 SRA1: Steroid recepto 87.3 1.3 2.7E-05 32.1 4.4 41 18-58 42-83 (157)
14 PRK13182 racA polar chromosome 86.0 6.8 0.00015 29.0 7.8 19 41-59 126-144 (175)
15 PF05377 FlaC_arch: Flagella a 85.6 3.2 7E-05 26.2 5.1 36 26-61 4-42 (55)
16 PF10779 XhlA: Haemolysin XhlA 85.2 2.2 4.7E-05 26.9 4.2 31 25-59 2-32 (71)
17 PF01519 DUF16: Protein of unk 84.7 1.9 4E-05 30.3 4.0 21 33-53 81-101 (102)
18 PF04513 Baculo_PEP_C: Baculov 84.6 7.6 0.00016 28.4 7.3 45 18-62 34-78 (140)
19 PF10158 LOH1CR12: Tumour supp 83.5 11 0.00023 26.9 7.6 48 14-62 59-109 (131)
20 PF07889 DUF1664: Protein of u 78.9 17 0.00038 25.9 7.3 50 12-61 40-89 (126)
21 PF09712 PHA_synth_III_E: Poly 78.9 12 0.00026 29.5 7.1 37 24-60 248-292 (293)
22 PF04380 BMFP: Membrane fusoge 78.6 15 0.00033 23.7 7.1 18 43-60 60-77 (79)
23 PF06705 SF-assemblin: SF-asse 76.2 14 0.00031 27.7 6.6 47 15-64 63-109 (247)
24 PF13747 DUF4164: Domain of un 75.6 13 0.00028 24.7 5.6 40 19-59 5-44 (89)
25 PF10158 LOH1CR12: Tumour supp 75.2 18 0.00038 25.8 6.5 47 18-64 27-73 (131)
26 KOG0804 Cytoplasmic Zn-finger 75.0 14 0.00031 32.0 7.0 49 13-61 373-449 (493)
27 PF04513 Baculo_PEP_C: Baculov 74.9 26 0.00056 25.7 7.4 48 15-62 49-100 (140)
28 PF05531 NPV_P10: Nucleopolyhe 74.6 17 0.00037 24.1 5.9 47 20-67 23-69 (75)
29 PF09903 DUF2130: Uncharacteri 74.3 20 0.00044 28.1 7.2 47 14-60 187-236 (267)
30 PRK09841 cryptic autophosphory 73.6 17 0.00037 31.4 7.2 63 5-67 235-301 (726)
31 KOG4559 Uncharacterized conser 73.4 22 0.00048 25.6 6.6 44 15-59 69-115 (120)
32 PF00509 Hemagglutinin: Haemag 72.8 0.41 8.8E-06 41.7 -2.7 44 14-61 374-417 (550)
33 PF04508 Pox_A_type_inc: Viral 72.8 5 0.00011 21.5 2.5 19 42-60 3-21 (23)
34 PF06825 HSBP1: Heat shock fac 72.4 14 0.0003 23.1 4.8 36 25-60 6-41 (54)
35 KOG4117 Heat shock factor bind 70.9 22 0.00048 23.7 5.8 38 16-53 24-61 (73)
36 KOG3759 Uncharacterized RUN do 69.2 51 0.0011 29.3 9.1 57 8-68 199-255 (621)
37 PF02994 Transposase_22: L1 tr 68.8 5.5 0.00012 32.2 3.1 24 37-60 141-164 (370)
38 PF04102 SlyX: SlyX; InterPro 68.3 27 0.00058 21.9 5.6 19 42-60 34-52 (69)
39 PF04546 Sigma70_ner: Sigma-70 67.8 4.9 0.00011 29.6 2.4 48 19-66 107-161 (211)
40 PF00170 bZIP_1: bZIP transcri 67.6 25 0.00053 21.3 6.1 37 22-62 26-62 (64)
41 PRK13729 conjugal transfer pil 67.5 60 0.0013 28.1 9.1 38 26-63 80-120 (475)
42 PHA03332 membrane glycoprotein 67.0 16 0.00034 35.0 5.9 48 14-61 901-951 (1328)
43 PF05929 Phage_GPO: Phage caps 66.7 50 0.0011 26.4 8.0 58 12-69 193-257 (276)
44 PF11074 DUF2779: Domain of un 66.5 22 0.00048 25.0 5.4 38 17-60 58-105 (130)
45 PF12841 YvrJ: YvrJ protein fa 65.9 7.4 0.00016 22.7 2.4 17 45-61 20-36 (38)
46 PRK14127 cell division protein 65.9 43 0.00093 23.4 7.3 42 20-65 28-69 (109)
47 TIGR02135 phoU_full phosphate 65.5 41 0.00088 23.0 6.7 49 13-61 118-166 (212)
48 PF07889 DUF1664: Protein of u 65.4 38 0.00083 24.2 6.5 44 15-62 40-83 (126)
49 PF00103 Hormone_1: Somatotrop 65.4 15 0.00034 27.4 4.7 54 12-65 89-152 (214)
50 PF07439 DUF1515: Protein of u 65.2 33 0.00071 24.6 6.1 26 37-62 37-62 (112)
51 PF04344 CheZ: Chemotaxis phos 65.0 4.4 9.4E-05 30.5 1.7 39 30-71 128-166 (214)
52 PF03980 Nnf1: Nnf1 ; InterPr 64.8 37 0.00081 22.3 7.3 20 43-62 30-49 (109)
53 PF03670 UPF0184: Uncharacteri 64.1 14 0.0003 25.0 3.9 29 33-61 33-61 (83)
54 PF11101 DUF2884: Protein of u 63.8 33 0.00071 26.0 6.2 48 13-60 169-216 (229)
55 PRK00286 xseA exodeoxyribonucl 63.2 48 0.001 26.7 7.4 45 16-60 321-370 (438)
56 PRK11546 zraP zinc resistance 63.1 57 0.0012 23.9 7.5 50 14-63 46-105 (143)
57 PRK10884 SH3 domain-containing 62.6 65 0.0014 24.4 8.1 51 12-62 90-140 (206)
58 PF05440 MtrB: Tetrahydrometha 62.1 13 0.00027 25.9 3.4 31 42-72 32-62 (97)
59 TIGR03017 EpsF chain length de 62.1 70 0.0015 25.3 8.0 65 5-69 139-207 (444)
60 PRK00965 tetrahydromethanopter 61.6 12 0.00026 26.0 3.2 31 42-72 33-63 (96)
61 PF02646 RmuC: RmuC family; I 61.5 34 0.00074 26.7 6.1 40 20-63 238-277 (304)
62 PF06937 EURL: EURL protein; 60.6 21 0.00045 29.1 4.9 31 11-41 219-249 (285)
63 KOG0810 SNARE protein Syntaxin 60.4 17 0.00036 29.2 4.3 11 49-59 208-218 (297)
64 PRK04406 hypothetical protein; 60.0 9.1 0.0002 24.9 2.3 16 48-63 40-55 (75)
65 COG5570 Uncharacterized small 58.9 13 0.00027 23.9 2.7 30 38-67 3-32 (57)
66 PF03500 Cellsynth_D: Cellulos 58.7 59 0.0013 24.0 6.6 46 17-64 2-59 (144)
67 PF15136 UPF0449: Uncharacteri 58.4 23 0.0005 24.6 4.2 32 27-58 65-96 (97)
68 PF01920 Prefoldin_2: Prefoldi 58.1 38 0.00082 21.4 4.9 36 25-60 1-39 (106)
69 PF13887 MRF_C1: Myelin gene r 57.0 7.7 0.00017 22.9 1.4 12 43-54 24-35 (36)
70 PF13864 Enkurin: Calmodulin-b 56.4 55 0.0012 21.5 6.0 20 40-59 74-93 (98)
71 PRK11115 transcriptional regul 55.4 69 0.0015 23.0 6.5 50 14-63 26-75 (236)
72 PRK13729 conjugal transfer pil 55.3 13 0.00029 32.0 3.1 20 38-57 102-121 (475)
73 PF12462 Helicase_IV_N: DNA he 55.2 57 0.0012 23.5 6.0 41 14-54 76-116 (166)
74 cd00632 Prefoldin_beta Prefold 54.5 60 0.0013 21.4 6.3 20 40-59 77-96 (105)
75 PRK06771 hypothetical protein; 54.5 35 0.00075 23.6 4.5 25 45-69 28-52 (93)
76 PF10975 DUF2802: Protein of u 54.4 13 0.00028 23.8 2.3 19 45-63 3-21 (70)
77 PF07400 IL11: Interleukin 11; 53.9 33 0.00072 26.7 4.8 37 40-76 124-162 (199)
78 TIGR03007 pepcterm_ChnLen poly 53.8 39 0.00085 27.2 5.4 62 5-66 129-194 (498)
79 smart00338 BRLZ basic region l 53.4 48 0.001 20.0 5.4 36 23-62 27-62 (65)
80 PRK00846 hypothetical protein; 53.1 32 0.00069 22.8 4.1 14 48-61 42-55 (77)
81 PF06008 Laminin_I: Laminin Do 52.2 59 0.0013 24.5 5.9 45 17-61 155-206 (264)
82 PHA03395 p10 fibrous body prot 52.0 75 0.0016 21.8 6.8 59 20-79 23-81 (87)
83 PF15134 DUF4570: Domain of un 51.7 84 0.0018 22.3 6.7 44 14-57 16-69 (109)
84 PF02524 KID: KID repeat; Int 51.2 4.8 0.0001 18.3 -0.0 10 48-57 1-10 (11)
85 PRK11519 tyrosine kinase; Prov 51.2 89 0.0019 27.2 7.5 63 5-67 235-301 (719)
86 PF15397 DUF4618: Domain of un 50.9 1.2E+02 0.0027 24.1 7.7 23 42-64 202-224 (258)
87 PF06008 Laminin_I: Laminin Do 50.6 1.1E+02 0.0023 23.1 7.5 19 12-30 124-142 (264)
88 TIGR02135 phoU_full phosphate 50.1 80 0.0017 21.5 6.6 46 14-59 15-60 (212)
89 PRK03100 sec-independent trans 49.6 89 0.0019 22.7 6.2 45 15-60 25-70 (136)
90 PF04799 Fzo_mitofusin: fzo-li 49.2 44 0.00096 25.2 4.8 13 42-54 129-141 (171)
91 KOG0500 Cyclic nucleotide-gate 49.2 68 0.0015 28.3 6.5 55 6-60 452-506 (536)
92 PF10393 Matrilin_ccoil: Trime 49.1 59 0.0013 19.7 5.0 31 15-49 16-46 (47)
93 TIGR01005 eps_transp_fam exopo 49.0 1.1E+02 0.0023 26.4 7.5 63 5-67 162-228 (754)
94 COG4575 ElaB Uncharacterized c 48.9 80 0.0017 22.3 5.7 43 10-52 36-78 (104)
95 PF10152 DUF2360: Predicted co 48.9 65 0.0014 22.9 5.4 28 29-59 13-40 (148)
96 PF05537 DUF759: Borrelia burg 48.4 55 0.0012 28.1 5.7 30 49-79 398-427 (431)
97 PRK11166 chemotaxis regulator 47.9 64 0.0014 24.9 5.6 33 30-65 140-172 (214)
98 PF08776 VASP_tetra: VASP tetr 47.3 61 0.0013 19.4 5.8 30 13-42 2-31 (40)
99 COG1322 Predicted nuclease of 47.3 50 0.0011 28.0 5.3 47 12-58 103-150 (448)
100 KOG2802 Membrane protein HUEL 46.8 50 0.0011 28.7 5.2 20 41-60 473-492 (503)
101 PF03105 SPX: SPX domain; Int 46.7 1E+02 0.0022 21.8 7.4 50 15-64 88-137 (275)
102 TIGR02976 phageshock_pspB phag 46.6 32 0.0007 22.5 3.3 22 36-57 45-66 (75)
103 PF08826 DMPK_coil: DMPK coile 46.6 74 0.0016 20.1 6.7 41 22-63 15-55 (61)
104 PF07544 Med9: RNA polymerase 46.0 80 0.0017 20.4 5.1 49 9-62 19-67 (83)
105 PF03310 Cauli_DNA-bind: Cauli 45.4 78 0.0017 22.8 5.3 32 31-62 35-69 (121)
106 COG0783 Dps DNA-binding ferrit 45.3 43 0.00093 24.5 4.1 47 24-70 46-96 (156)
107 TIGR02132 phaR_Bmeg polyhydrox 45.3 1.4E+02 0.0031 23.1 7.2 18 47-64 86-103 (189)
108 PF00517 GP41: Retroviral enve 45.0 1.2E+02 0.0026 22.6 6.5 38 24-61 30-67 (204)
109 PF10805 DUF2730: Protein of u 44.7 82 0.0018 21.2 5.2 20 40-59 72-91 (106)
110 PF02865 STAT_int: STAT protei 44.4 84 0.0018 22.0 5.3 31 12-42 52-84 (124)
111 PRK06665 flgK flagellar hook-a 44.2 1.6E+02 0.0035 25.6 7.9 41 24-64 155-195 (627)
112 PHA03385 IX capsid protein IX, 43.8 36 0.00077 25.1 3.4 28 36-63 103-130 (135)
113 TIGR00237 xseA exodeoxyribonuc 43.6 1.3E+02 0.0029 24.7 7.1 40 20-59 275-319 (432)
114 PF05791 Bacillus_HBL: Bacillu 43.4 1.3E+02 0.0028 21.9 6.6 35 28-62 144-178 (184)
115 TIGR02338 gimC_beta prefoldin, 43.2 76 0.0016 21.1 4.8 17 43-59 91-107 (110)
116 PF11945 WASH_WAHD: WAHD domai 43.1 1.4E+02 0.0031 23.9 7.1 35 27-61 34-71 (297)
117 PF09728 Taxilin: Myosin-like 42.8 1.5E+02 0.0033 23.5 7.2 27 35-61 235-265 (309)
118 PF05546 She9_MDM33: She9 / Md 41.9 1.7E+02 0.0036 22.8 7.3 47 16-62 3-54 (207)
119 COG4582 Uncharacterized protei 41.7 1.5E+02 0.0033 23.7 6.9 48 20-67 18-79 (244)
120 PF04336 DUF479: Protein of un 41.5 1E+02 0.0022 20.4 5.3 15 15-29 16-30 (106)
121 PF05531 NPV_P10: Nucleopolyhe 41.2 1.1E+02 0.0023 20.4 5.1 23 40-62 35-57 (75)
122 PF02185 HR1: Hr1 repeat; Int 41.0 55 0.0012 20.1 3.6 45 20-64 20-64 (70)
123 PF06875 PRF: Plethodontid rec 40.7 86 0.0019 24.6 5.3 33 37-69 131-163 (214)
124 PF01895 PhoU: PhoU domain; I 40.2 76 0.0017 18.5 7.2 45 15-59 3-47 (88)
125 COG2960 Uncharacterized protei 40.1 1.3E+02 0.0029 21.2 6.8 39 26-64 37-90 (103)
126 PRK00286 xseA exodeoxyribonucl 40.1 1.8E+02 0.0038 23.5 7.2 16 42-57 307-322 (438)
127 COG4062 MtrB Tetrahydromethano 39.9 47 0.001 23.7 3.5 34 38-71 29-62 (108)
128 PRK15374 pathogenicity island 39.8 1.7E+02 0.0037 26.2 7.5 33 40-72 148-180 (593)
129 TIGR02338 gimC_beta prefoldin, 39.7 1.1E+02 0.0024 20.3 6.6 26 36-61 70-95 (110)
130 KOG3681 Alpha-catenin [Extrace 39.5 1E+02 0.0022 28.6 6.3 49 14-62 321-371 (835)
131 PF12205 GIT1_C: G protein-cou 39.4 1.3E+02 0.0029 21.3 5.8 34 14-47 19-56 (123)
132 PF00210 Ferritin: Ferritin-li 39.3 57 0.0012 20.7 3.6 30 25-54 31-60 (142)
133 PF09731 Mitofilin: Mitochondr 39.0 2.2E+02 0.0047 23.8 7.7 46 16-61 346-399 (582)
134 cd00632 Prefoldin_beta Prefold 38.9 1.1E+02 0.0024 20.0 6.8 25 37-61 67-91 (105)
135 PF12896 Apc4: Anaphase-promot 38.9 1.4E+02 0.0031 21.2 7.2 42 17-58 26-67 (210)
136 COG5460 Uncharacterized conser 38.2 30 0.00066 23.6 2.2 21 36-56 60-80 (82)
137 PRK08471 flgK flagellar hook-a 37.9 2.3E+02 0.005 24.6 8.0 41 24-64 148-188 (613)
138 PF02601 Exonuc_VII_L: Exonucl 37.8 1.8E+02 0.004 22.2 7.1 17 42-58 193-209 (319)
139 PF12296 HsbA: Hydrophobic sur 37.5 84 0.0018 20.4 4.2 42 15-56 75-121 (124)
140 PRK07521 flgK flagellar hook-a 37.5 2.4E+02 0.0052 23.4 7.9 40 24-63 138-177 (483)
141 cd01043 DPS DPS protein, ferri 37.4 73 0.0016 21.2 4.0 30 24-53 29-58 (139)
142 PF09580 Spore_YhcN_YlaJ: Spor 37.4 68 0.0015 22.4 4.0 29 36-64 142-176 (177)
143 TIGR00414 serS seryl-tRNA synt 37.3 2.3E+02 0.0051 23.2 8.5 54 24-77 46-118 (418)
144 PF10267 Tmemb_cc2: Predicted 37.3 1.5E+02 0.0032 24.9 6.5 38 24-61 235-272 (395)
145 PF08946 Osmo_CC: Osmosensory 37.0 78 0.0017 19.5 3.7 27 36-62 15-41 (46)
146 PF06667 PspB: Phage shock pro 36.8 63 0.0014 21.3 3.5 21 36-56 45-65 (75)
147 TIGR03185 DNA_S_dndD DNA sulfu 36.8 1.4E+02 0.003 25.5 6.4 38 20-57 378-415 (650)
148 PF09304 Cortex-I_coil: Cortex 36.6 1.5E+02 0.0033 20.9 6.0 21 38-58 56-76 (107)
149 PRK09458 pspB phage shock prot 36.4 64 0.0014 21.5 3.5 19 38-56 47-65 (75)
150 PF15469 Sec5: Exocyst complex 36.4 1.5E+02 0.0033 20.8 5.8 49 18-67 124-172 (182)
151 KOG2336 Molybdopterin biosynth 36.3 60 0.0013 27.5 4.1 31 42-72 5-35 (422)
152 PF05164 ZapA: Cell division p 36.3 1E+02 0.0022 18.9 4.3 10 27-36 64-73 (89)
153 PF05010 TACC: Transforming ac 35.6 2E+02 0.0044 22.0 7.4 27 38-64 35-61 (207)
154 COG3206 GumC Uncharacterized p 35.5 2.1E+02 0.0047 23.1 7.1 50 19-68 181-230 (458)
155 cd00890 Prefoldin Prefoldin is 35.2 87 0.0019 20.4 4.0 24 38-61 99-122 (129)
156 KOG4496 Predicted coiled-coil 35.2 1.9E+02 0.0041 22.3 6.3 33 25-60 36-68 (194)
157 PF05873 Mt_ATP-synt_D: ATP sy 34.9 55 0.0012 23.8 3.3 42 21-62 84-125 (161)
158 COG4467 Regulator of replicati 34.8 74 0.0016 22.9 3.8 28 37-64 5-32 (114)
159 PF06120 Phage_HK97_TLTM: Tail 34.7 1E+02 0.0022 24.9 5.1 40 23-62 56-103 (301)
160 PHA02604 rI.-1 hypothetical pr 34.6 1.4E+02 0.0031 21.7 5.3 36 15-50 82-117 (126)
161 PHA03386 P10 fibrous body prot 34.3 1.6E+02 0.0035 20.5 6.1 27 40-66 36-62 (94)
162 PRK10626 hypothetical protein; 34.2 2.3E+02 0.0049 22.4 6.8 46 16-61 188-236 (239)
163 PF10046 BLOC1_2: Biogenesis o 34.2 1.4E+02 0.003 19.7 7.3 29 33-61 28-56 (99)
164 KOG1760 Molecular chaperone Pr 33.9 1.8E+02 0.0039 21.4 5.8 37 20-56 82-118 (131)
165 PF07195 FliD_C: Flagellar hoo 33.7 1.2E+02 0.0025 22.6 5.0 18 40-57 193-210 (239)
166 TIGR02492 flgK_ends flagellar 33.6 2.3E+02 0.005 22.1 7.9 41 24-64 143-183 (322)
167 cd01111 HTH_MerD Helix-Turn-He 33.5 1.5E+02 0.0032 19.8 5.5 29 31-59 78-106 (107)
168 KOG1511 Mevalonate kinase MVK/ 33.5 2.5E+02 0.0055 24.0 7.3 38 5-47 236-273 (397)
169 PRK05658 RNA polymerase sigma 33.4 2.2E+02 0.0047 24.4 7.1 32 35-66 273-304 (619)
170 PF02994 Transposase_22: L1 tr 33.2 32 0.00069 27.9 2.0 17 45-61 170-186 (370)
171 COG3416 Uncharacterized protei 33.2 82 0.0018 25.1 4.2 21 42-62 57-77 (233)
172 PLN02678 seryl-tRNA synthetase 33.0 3E+02 0.0066 23.2 8.5 52 24-77 49-120 (448)
173 PF03233 Cauli_AT: Aphid trans 32.9 1.8E+02 0.0038 22.0 5.8 25 38-62 109-133 (163)
174 PF14931 IFT20: Intraflagellar 32.9 1.7E+02 0.0038 20.5 6.0 38 13-51 22-59 (120)
175 cd01052 DPSL DPS-like protein, 32.9 1.1E+02 0.0023 20.3 4.2 30 24-53 37-66 (148)
176 PF06657 Cep57_MT_bd: Centroso 32.9 1.4E+02 0.003 19.4 5.6 45 19-63 14-66 (79)
177 PF08653 DASH_Dam1: DASH compl 32.8 70 0.0015 20.2 3.1 10 29-38 5-14 (58)
178 PF02108 FliH: Flagellar assem 32.6 1.4E+02 0.003 19.1 5.3 37 13-49 4-40 (128)
179 COG3159 Uncharacterized protei 32.5 39 0.00084 26.6 2.3 24 42-65 47-70 (218)
180 PLN02554 UDP-glycosyltransfera 32.4 1.8E+02 0.004 24.0 6.3 50 12-61 426-478 (481)
181 PRK09448 DNA starvation/statio 32.2 89 0.0019 22.4 4.0 43 25-67 54-100 (162)
182 COG3609 Predicted transcriptio 32.2 89 0.0019 20.4 3.7 47 13-61 10-56 (89)
183 cd00584 Prefoldin_alpha Prefol 31.9 1.6E+02 0.0034 19.6 5.7 37 21-61 5-41 (129)
184 smart00503 SynN Syntaxin N-ter 31.7 1.4E+02 0.003 18.9 6.6 29 27-55 44-72 (117)
185 PF14071 YlbD_coat: Putative c 31.7 86 0.0019 22.6 3.8 15 55-69 95-109 (124)
186 KOG0796 Spliceosome subunit [R 31.5 2.6E+02 0.0056 23.2 7.0 25 40-64 112-139 (319)
187 PRK00182 tatB sec-independent 31.4 1.7E+02 0.0037 21.9 5.5 43 16-59 26-69 (160)
188 PF15249 GLTSCR1: Glioma tumor 31.2 95 0.0021 20.9 3.8 26 27-52 53-78 (109)
189 PF11172 DUF2959: Protein of u 31.2 1.6E+02 0.0034 23.0 5.3 36 24-59 165-200 (201)
190 PF03670 UPF0184: Uncharacteri 31.0 1.7E+02 0.0036 19.8 4.9 28 36-63 29-56 (83)
191 KOG4460 Nuclear pore complex, 30.8 1.7E+02 0.0037 26.7 6.2 42 31-72 614-655 (741)
192 COG0598 CorA Mg2+ and Co2+ tra 30.8 82 0.0018 24.5 3.8 42 19-60 140-193 (322)
193 PRK10947 global DNA-binding tr 30.7 2E+02 0.0044 20.6 6.7 17 23-39 25-41 (135)
194 PF07586 HXXSHH: Protein of un 30.5 2.5E+02 0.0054 21.5 6.5 48 18-65 162-209 (302)
195 PF10280 Med11: Mediator compl 30.4 45 0.00098 22.8 2.1 18 48-65 7-24 (117)
196 PHA03386 P10 fibrous body prot 30.3 1.9E+02 0.0042 20.1 8.0 54 19-77 23-76 (94)
197 PF08581 Tup_N: Tup N-terminal 30.1 1.6E+02 0.0036 19.3 6.9 40 20-59 2-58 (79)
198 COG4839 FtsL Protein required 30.1 1.9E+02 0.004 20.9 5.3 21 40-60 74-94 (120)
199 PF01920 Prefoldin_2: Prefoldi 29.8 1.5E+02 0.0032 18.6 4.9 18 42-59 78-95 (106)
200 KOG1656 Protein involved in gl 29.7 2.9E+02 0.0062 22.0 7.1 17 43-59 160-176 (221)
201 PF11101 DUF2884: Protein of u 29.6 2.5E+02 0.0054 21.2 7.9 47 15-61 136-188 (229)
202 TIGR00237 xseA exodeoxyribonuc 29.5 3.2E+02 0.007 22.5 7.4 44 16-59 316-364 (432)
203 PF09277 Erythro-docking: Eryt 29.3 31 0.00067 22.2 1.0 20 45-64 8-27 (58)
204 cd00082 HisKA Histidine Kinase 29.0 92 0.002 16.0 4.8 25 37-61 38-62 (65)
205 PF04380 BMFP: Membrane fusoge 28.9 1.6E+02 0.0035 18.9 5.6 17 38-54 62-78 (79)
206 PRK12714 flgK flagellar hook-a 28.8 3.9E+02 0.0085 23.2 7.9 41 24-64 143-183 (624)
207 PF02646 RmuC: RmuC family; I 28.6 2.9E+02 0.0062 21.6 6.9 24 15-38 17-40 (304)
208 PRK05683 flgK flagellar hook-a 27.9 3.9E+02 0.0085 23.7 7.9 40 24-63 143-182 (676)
209 KOG3313 Molecular chaperone Pr 27.8 1.7E+02 0.0038 22.6 5.1 29 29-57 47-75 (187)
210 COG3599 DivIVA Cell division i 27.8 2.1E+02 0.0046 21.9 5.6 37 19-59 27-63 (212)
211 PF15027 DUF4525: Domain of un 27.8 1.8E+02 0.0039 21.6 4.9 28 34-61 80-107 (138)
212 PF05008 V-SNARE: Vesicle tran 27.7 1.5E+02 0.0033 18.1 4.6 35 22-56 39-77 (79)
213 PF12128 DUF3584: Protein of u 27.6 3.3E+02 0.0072 25.4 7.6 53 15-67 718-770 (1201)
214 PRK04654 sec-independent trans 27.6 3E+02 0.0066 21.6 7.5 41 17-57 29-71 (214)
215 PF10805 DUF2730: Protein of u 27.5 2E+02 0.0043 19.3 5.2 26 37-62 76-101 (106)
216 KOG1106 Uncharacterized conser 27.5 2.3E+02 0.005 21.6 5.6 33 25-57 124-160 (177)
217 TIGR00996 Mtu_fam_mce virulenc 27.4 2.2E+02 0.0048 21.3 5.6 15 12-26 131-145 (291)
218 PF05842 Euplotes_phero: Euplo 27.4 48 0.001 24.4 1.9 18 16-33 3-21 (134)
219 PF03148 Tektin: Tektin family 27.1 3.4E+02 0.0074 22.0 7.7 33 22-54 233-265 (384)
220 PF01346 FKBP_N: Domain amino 27.1 1.9E+02 0.004 19.0 5.1 59 7-71 61-119 (124)
221 COG4570 Rus Holliday junction 27.0 53 0.0012 24.0 2.1 17 49-65 84-100 (132)
222 PF06698 DUF1192: Protein of u 26.7 1E+02 0.0023 19.5 3.1 21 42-62 23-43 (59)
223 COG4976 Predicted methyltransf 26.5 1E+02 0.0022 25.2 3.8 19 17-35 84-102 (287)
224 PRK09546 zntB zinc transporter 26.4 1.1E+02 0.0025 23.5 4.0 30 18-47 142-171 (324)
225 smart00190 IL4_13 Interleukins 26.2 1E+02 0.0022 22.7 3.4 18 15-32 117-134 (138)
226 PF09177 Syntaxin-6_N: Syntaxi 26.1 1.9E+02 0.0041 18.7 7.3 23 35-57 41-63 (97)
227 PF00435 Spectrin: Spectrin re 26.1 1.5E+02 0.0031 17.4 4.9 25 35-59 75-99 (105)
228 PF04163 Tht1: Tht1-like nucle 26.1 3E+02 0.0066 24.1 6.8 34 13-46 384-424 (544)
229 PRK07737 fliD flagellar cappin 26.0 3.7E+02 0.0081 22.7 7.2 21 39-59 447-467 (501)
230 PF04912 Dynamitin: Dynamitin 25.9 1.3E+02 0.0029 24.1 4.3 8 24-31 359-366 (388)
231 KOG4302 Microtubule-associated 25.8 2.2E+02 0.0048 25.6 6.0 43 22-68 160-202 (660)
232 smart00709 Zpr1 Duplicated dom 25.8 1.5E+02 0.0033 21.5 4.3 41 20-60 98-139 (160)
233 cd01040 globin Globins are hem 25.8 1.3E+02 0.0029 19.0 3.6 36 30-66 56-91 (140)
234 TIGR02132 phaR_Bmeg polyhydrox 25.5 3.2E+02 0.007 21.2 6.7 25 22-46 79-103 (189)
235 PF01420 Methylase_S: Type I r 25.5 1.8E+02 0.0038 18.6 4.2 25 36-61 142-166 (167)
236 cd07626 BAR_SNX9_like The Bin/ 25.3 3E+02 0.0065 20.7 6.1 38 24-61 141-179 (199)
237 PLN02320 seryl-tRNA synthetase 25.3 4.5E+02 0.0098 22.8 8.5 56 21-76 106-178 (502)
238 PF03273 Baculo_gp64: Baculovi 25.2 4.4E+02 0.0095 23.3 7.5 53 4-58 276-328 (498)
239 PF12792 CSS-motif: CSS motif 25.2 2.1E+02 0.0045 19.3 4.7 29 13-42 4-32 (208)
240 PF01402 RHH_1: Ribbon-helix-h 24.9 42 0.00091 18.0 1.0 27 34-63 6-32 (39)
241 PF11328 DUF3130: Protein of u 24.9 2.4E+02 0.0052 19.5 5.3 39 12-51 42-80 (90)
242 KOG3684 Ca2+-activated K+ chan 24.8 2.6E+02 0.0056 24.6 6.1 34 39-74 440-473 (489)
243 PRK15364 pathogenicity island 24.6 3.4E+02 0.0074 21.2 6.2 39 17-56 47-88 (196)
244 PF05121 GvpK: Gas vesicle pro 24.6 2.4E+02 0.0052 19.3 6.3 58 8-68 6-73 (88)
245 PF04678 DUF607: Protein of un 24.5 2.8E+02 0.006 20.1 6.5 51 13-63 35-87 (180)
246 KOG2196 Nuclear porin [Nuclear 24.3 2.5E+02 0.0053 22.7 5.5 26 33-58 178-203 (254)
247 PF01297 TroA: Periplasmic sol 24.2 2.9E+02 0.0063 20.2 6.6 52 12-63 97-148 (256)
248 PHA01750 hypothetical protein 24.1 2.3E+02 0.005 19.0 6.0 24 39-62 48-71 (75)
249 PLN02677 mevalonate kinase 24.0 4.1E+02 0.0089 21.8 7.0 21 6-27 237-257 (387)
250 cd07666 BAR_SNX7 The Bin/Amphi 23.9 1.6E+02 0.0034 23.0 4.3 38 22-59 30-73 (243)
251 PF07195 FliD_C: Flagellar hoo 23.9 1.5E+02 0.0032 22.0 4.1 29 31-59 191-219 (239)
252 TIGR01010 BexC_CtrB_KpsE polys 23.7 3.5E+02 0.0077 21.0 8.1 33 35-67 172-204 (362)
253 PHA03332 membrane glycoprotein 23.5 1.9E+02 0.0042 28.1 5.4 39 17-55 925-963 (1328)
254 PRK05563 DNA polymerase III su 23.5 1E+02 0.0022 26.3 3.4 21 42-62 371-391 (559)
255 PF05250 UPF0193: Uncharacteri 23.4 1.3E+02 0.0029 23.3 3.8 37 18-54 151-196 (212)
256 PF00957 Synaptobrevin: Synapt 23.4 2E+02 0.0043 18.0 6.5 22 42-63 26-47 (89)
257 TIGR00293 prefoldin, archaeal 23.4 2.3E+02 0.005 18.7 5.7 28 32-59 12-39 (126)
258 PRK06945 flgK flagellar hook-a 23.4 5.2E+02 0.011 22.8 7.9 41 24-64 144-184 (651)
259 TIGR01013 2a58 Phosphate:Na+ S 23.3 2.4E+02 0.0052 23.0 5.4 46 14-59 381-426 (456)
260 PF12805 FUSC-like: FUSC-like 23.2 3.3E+02 0.0073 20.6 6.2 49 14-62 205-258 (284)
261 PRK06285 chorismate mutase; Pr 23.1 1.3E+02 0.0028 19.7 3.2 24 39-62 6-29 (96)
262 COG2047 Uncharacterized protei 23.1 2E+02 0.0044 23.2 4.8 37 7-45 196-238 (258)
263 TIGR01803 CM-like chorismate m 23.0 94 0.002 19.7 2.5 20 43-62 2-21 (82)
264 KOG3614 Ca2+/Mg2+-permeable ca 23.0 2.3E+02 0.005 27.9 5.9 46 17-62 1121-1177(1381)
265 PRK08147 flgK flagellar hook-a 22.9 4.6E+02 0.01 22.0 7.9 41 24-64 144-184 (547)
266 PRK07191 flgK flagellar hook-a 22.8 4.4E+02 0.0095 21.7 7.9 41 24-64 143-183 (456)
267 PRK00420 hypothetical protein; 22.7 2.1E+02 0.0045 20.1 4.4 36 20-55 71-107 (112)
268 PHA02557 22 prohead core prote 22.7 3.3E+02 0.0072 22.1 6.0 41 21-61 118-162 (271)
269 PRK13169 DNA replication intia 22.7 1.8E+02 0.004 20.2 4.1 9 31-39 24-32 (110)
270 PRK06975 bifunctional uroporph 22.5 5E+02 0.011 22.7 7.4 17 42-58 380-396 (656)
271 PF04582 Reo_sigmaC: Reovirus 22.4 2.3E+02 0.0049 23.5 5.1 43 20-62 110-155 (326)
272 PF10152 DUF2360: Predicted co 22.3 2.9E+02 0.0064 19.6 7.3 39 17-59 9-47 (148)
273 COG0013 AlaS Alanyl-tRNA synth 22.2 1.7E+02 0.0038 27.2 4.8 42 19-61 712-753 (879)
274 cd01145 TroA_c Periplasmic bin 22.2 3E+02 0.0066 19.7 6.0 51 12-62 113-163 (203)
275 PHA02675 ORF104 fusion protein 22.1 2.8E+02 0.0061 19.2 6.1 40 19-62 34-73 (90)
276 cd05511 Bromo_TFIID Bromodomai 22.0 1.2E+02 0.0026 20.4 3.0 24 34-57 89-112 (112)
277 COG1394 NtpD Archaeal/vacuolar 22.0 2.6E+02 0.0057 21.6 5.1 37 16-56 133-171 (211)
278 PF07047 OPA3: Optic atrophy 3 22.0 1.3E+02 0.0029 21.0 3.3 23 40-62 105-127 (134)
279 cd07307 BAR The Bin/Amphiphysi 21.9 2.4E+02 0.0051 18.3 7.2 41 14-54 64-105 (194)
280 PF12221 HflK_N: Bacterial mem 21.7 85 0.0018 18.6 1.9 17 12-28 19-35 (42)
281 smart00808 FABD F-actin bindin 21.7 1.3E+02 0.0028 21.9 3.2 17 51-67 86-102 (126)
282 cd00907 Bacterioferritin Bacte 21.6 2.1E+02 0.0046 19.0 4.1 25 26-50 38-62 (153)
283 PRK00892 lpxD UDP-3-O-[3-hydro 21.6 67 0.0015 25.1 1.9 20 37-56 321-340 (343)
284 PRK08032 fliD flagellar cappin 21.3 4.8E+02 0.01 21.6 7.0 52 12-63 369-436 (462)
285 PF02601 Exonuc_VII_L: Exonucl 21.2 3.1E+02 0.0067 20.9 5.4 43 16-58 141-183 (319)
286 COG3143 CheZ Chemotaxis protei 21.1 3E+02 0.0064 21.8 5.3 32 27-61 140-171 (217)
287 PF04888 SseC: Secretion syste 20.9 3.9E+02 0.0084 20.4 6.4 36 26-61 258-293 (306)
288 KOG0978 E3 ubiquitin ligase in 20.9 3.2E+02 0.0069 24.9 6.0 26 20-45 60-85 (698)
289 PF08020 DUF1706: Protein of u 20.8 94 0.002 22.8 2.4 48 9-61 4-51 (166)
290 PF05130 FlgN: FlgN protein; 20.7 2.4E+02 0.0052 17.9 8.1 51 16-66 13-70 (143)
291 PF00489 IL6: Interleukin-6/G- 20.7 1E+02 0.0022 22.1 2.5 48 21-72 67-114 (154)
292 PHA03395 p10 fibrous body prot 20.7 2.2E+02 0.0048 19.5 4.0 22 42-63 37-58 (87)
293 PF05816 TelA: Toxic anion res 20.6 3.9E+02 0.0085 21.1 6.0 19 22-40 84-102 (333)
294 KOG4057 Uncharacterized conser 20.6 82 0.0018 24.1 2.1 16 49-64 14-29 (180)
295 COG0172 SerS Seryl-tRNA synthe 20.5 5.4E+02 0.012 21.9 7.7 59 22-80 43-120 (429)
296 PRK10361 DNA recombination pro 20.5 3.6E+02 0.0079 23.3 6.1 36 24-63 375-410 (475)
297 PF15145 DUF4577: Domain of un 20.4 54 0.0012 23.9 1.1 20 40-59 90-109 (128)
298 PF05811 DUF842: Eukaryotic pr 20.4 1.6E+02 0.0036 20.5 3.5 22 12-33 58-79 (131)
299 PRK13936 phosphoheptose isomer 20.4 3.4E+02 0.0074 19.6 5.7 41 23-63 3-43 (197)
300 PRK08027 flgL flagellar hook-a 20.4 3.5E+02 0.0075 21.2 5.6 31 24-54 229-259 (317)
301 PF04344 CheZ: Chemotaxis phos 20.4 3.8E+02 0.0082 20.1 8.0 34 30-63 94-127 (214)
302 PF13990 YjcZ: YjcZ-like prote 20.3 3E+02 0.0065 22.2 5.3 36 30-65 91-128 (270)
No 1
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.3e-32 Score=179.52 Aligned_cols=65 Identities=51% Similarity=0.756 Sum_probs=62.4
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCCC
Q 034611 5 DSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPS 70 (89)
Q Consensus 5 ~s~dpkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~~ 70 (89)
...||| +++|||.+||+||||.|+|||+||++||+||||||+|||+|||||+|||+|+|||++++
T Consensus 7 a~aDpk-Nmq~LTs~vQ~lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIaDLm~qagvE~~~s 71 (73)
T KOG4117|consen 7 AEADPK-NMQDLTSVVQGLLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLMTQAGVEELES 71 (73)
T ss_pred CCCCcc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHccccCCCC
Confidence 356899 99999999999999999999999999999999999999999999999999999999885
No 2
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=99.96 E-value=5.2e-30 Score=160.27 Aligned_cols=54 Identities=61% Similarity=0.923 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034611 13 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e 66 (89)
.+|||+||++||+|||+||++||++|++||||||+|||+||+||++||+|||+|
T Consensus 1 s~elt~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE~si~dl~~qag~~ 54 (54)
T PF06825_consen 1 SQELTAFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLEKSIADLMTQAGVE 54 (54)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH----------
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 379999999999999999999999999999999999999999999999999986
No 3
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=95.12 E-value=0.16 Score=36.02 Aligned_cols=53 Identities=28% Similarity=0.514 Sum_probs=40.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHhhhHHHHHHHHHHHHHh
Q 034611 10 KQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKI---------------DEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 10 kqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~ri---------------DeMg~RIDdLEksI~dLm~q 62 (89)
+-|.++=..||+.|++|.+..=...-..|-.|| ++.-.|||.||+.|++|=++
T Consensus 38 eln~eEak~~vddl~~q~k~~~~e~e~K~~r~i~~ml~~~~~~r~~~~~~l~~rvd~Lerqv~~Lenk 105 (108)
T COG3937 38 ELNAEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENK 105 (108)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHhhccccccchHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999866554444444443 44568999999999999765
No 4
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=93.44 E-value=0.35 Score=29.59 Aligned_cols=19 Identities=26% Similarity=0.625 Sum_probs=15.7
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 034611 38 IVTKIDEMGNRINELEQSI 56 (89)
Q Consensus 38 I~~riDeMg~RIDdLEksI 56 (89)
+..|+|+|+.||..||..+
T Consensus 28 Lt~kL~~vs~RLe~LEn~~ 46 (47)
T PF10393_consen 28 LTQKLDAVSKRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 3456899999999999875
No 5
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=92.07 E-value=0.21 Score=43.87 Aligned_cols=35 Identities=26% Similarity=0.479 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034611 17 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS 55 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEks 55 (89)
.+++..|..||+++|+.+| +-|.|.-+|+|.||+.
T Consensus 286 ~~aL~~L~~qL~nnF~AIS----ssI~dIy~RLd~leAd 320 (610)
T PF01601_consen 286 GQALNQLTSQLSNNFGAIS----SSIQDIYNRLDQLEAD 320 (610)
T ss_dssp HHHHHHHHHHHHHHCCHHH----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhH----HHHHHHHHHHHHHhhc
Confidence 4577889999999999988 5567999999999975
No 6
>PF05597 Phasin: Poly(hydroxyalcanoate) granule associated protein (phasin); InterPro: IPR008769 Polyhydroxyalkanoates (PHAs) are storage polyesters synthesised by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.
Probab=91.37 E-value=1.5 Score=31.42 Aligned_cols=47 Identities=13% Similarity=0.333 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHhhhHHHHHHHHHHHHH
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTK--------IDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~r--------iDeMg~RIDdLEksI~dLm~ 61 (89)
+++.-+..-+..+...|+.=-..++.| |+.++.|||.|++.|..|..
T Consensus 76 ~~~~~~~~~~dklE~~fd~rV~~aL~rLgvPs~~dv~~L~~rId~L~~~v~~l~~ 130 (132)
T PF05597_consen 76 DVKERATGQWDKLEQAFDERVARALNRLGVPSRKDVEALSARIDQLTAQVERLAN 130 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333444444444555555444445555 68999999999999998864
No 7
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=91.14 E-value=1.5 Score=32.93 Aligned_cols=46 Identities=17% Similarity=0.468 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 17 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
..-+.++.+.++..|.+..+++-.++|.+..||..|+..|++-..+
T Consensus 69 e~~i~~~~~~v~~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ee~~~ 114 (247)
T PF06705_consen 69 EEQINNMQERVENQISEKQEQLQSRLDSLNDRIEALEEEIQEEKEE 114 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555566667777888888899999999998888876654
No 8
>TIGR01834 PHA_synth_III_E poly(R)-hydroxyalkanoic acid synthase, class III, PhaE subunit. This model represents the PhaE subunit of the heterodimeric class (class III) of polymerase for poly(R)-hydroxyalkanoic acids (PHAs), carbon and energy storage polymers of many bacteria. The most common PHA is polyhydroxybutyrate but about 150 different constituent hydroxyalkanoic acids (HAs) have been identified in various species. This model must be designated subfamily to indicate the heterogeneity of PHAs.
Probab=91.12 E-value=1.3 Score=36.02 Aligned_cols=42 Identities=21% Similarity=0.503 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHhhhHHHHHHHHHHHHHhhC
Q 034611 23 LLQQMQSRFQTMSDSIVTK--------IDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 23 LLqQmQ~kFqtmS~~I~~r--------iDeMg~RIDdLEksI~dLm~qaG 64 (89)
-+-+++-.|+.+.+.++.. ||+++.||.+||+.|..|-.+.+
T Consensus 264 a~m~lr~~~qe~~e~~L~~LnlPTRsElDe~~krL~ELrR~vr~L~k~l~ 313 (320)
T TIGR01834 264 ALMRLRIQQQEIVEALLKMLNLPTRSELDEAHQRIQQLRREVKSLKKRLG 313 (320)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556778888888888854 89999999999999999998865
No 9
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=90.34 E-value=2.5 Score=28.21 Aligned_cols=45 Identities=20% Similarity=0.533 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 14 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
.++++-+..-++++..++..+ ..-+.+||++-.+|..||+.+..|
T Consensus 41 ~~~~~~l~~~~~~l~~k~~~l-~~~l~~Id~Ie~~V~~LE~~v~~L 85 (99)
T PF10046_consen 41 KDIAAGLEKNLEDLNQKYEEL-QPYLQQIDQIEEQVTELEQTVYEL 85 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556677777777776 445677888888888888877765
No 10
>TIGR01837 PHA_granule_1 poly(hydroxyalkanoate) granule-associated protein. This model describes a domain found in some proteins associated with polyhydroxyalkanoate (PHA) granules in a subset of species that have PHA inclusion granules. Included are two tandem proteins of Pseudomonas oleovorans, PhaI and PhaF, and their homologs in related species. PhaF proteins have a low-complexity C-terminal region with repeats similar to AAAKP.
Probab=89.50 E-value=3 Score=28.80 Aligned_cols=19 Identities=26% Similarity=0.650 Sum_probs=16.3
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 034611 42 IDEMGNRINELEQSINDLR 60 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm 60 (89)
|+.+..|||.||+.|..|-
T Consensus 98 v~~L~~RI~~Le~~l~~l~ 116 (118)
T TIGR01837 98 IEALSAKIEQLAVQVEELR 116 (118)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5788899999999998874
No 11
>PF14261 DUF4351: Domain of unknown function (DUF4351)
Probab=87.50 E-value=0.6 Score=29.06 Aligned_cols=40 Identities=20% Similarity=0.372 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034611 19 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm 60 (89)
...-++.+++-||-.++..+..||...+ ++.||.=...|.
T Consensus 8 ~~~lllRlL~rrFG~lp~~~~~~I~~l~--~eqLE~l~e~il 47 (59)
T PF14261_consen 8 EARLLLRLLTRRFGELPPEIQERIQQLS--LEQLEALAEAIL 47 (59)
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHcCC--HHHHHHHHHHHh
Confidence 4567899999999999999999999987 788887555444
No 12
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=87.44 E-value=4.8 Score=35.09 Aligned_cols=54 Identities=31% Similarity=0.513 Sum_probs=40.1
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHhhCCCCCCCC
Q 034611 18 VFVQNLL---QQMQSRFQTMSDSIV---TKIDEMGNRINELEQSINDLRAEMGVEGSPSP 71 (89)
Q Consensus 18 ~~Vq~LL---qQmQ~kFqtmS~~I~---~riDeMg~RIDdLEksI~dLm~qaG~e~~~~~ 71 (89)
.|++.|- ..++.|++.||.+|- ...+..-+||-+||.+|..|-+++....+|.|
T Consensus 15 ~ya~~lk~e~a~~qqr~~qmseev~~L~eEk~~~~~~V~eLE~sL~eLk~q~~~~~~~~~ 74 (617)
T PF15070_consen 15 QYAQQLKEESAQWQQRMQQMSEEVRTLKEEKEHDISRVQELERSLSELKNQMAEPPPPEP 74 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCccc
Confidence 3444443 346889999998876 34578889999999999999998766554433
No 13
>PF07304 SRA1: Steroid receptor RNA activator (SRA1); InterPro: IPR009917 This entry consists of several hypothetical mammalian steroid receptor RNA activator proteins. The SRA-RNAs encode stable proteins that are widely expressed and upregulated in breast cancer cell lines. SRA-RNA is a steroid receptor co-activator which acts as a functional RNA. This domain is also found at the C terminus of Sec31, a component of the coat protein complex II (COPII, which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). COPII has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules. ; PDB: 2YRU_A.
Probab=87.34 E-value=1.3 Score=32.08 Aligned_cols=41 Identities=22% Similarity=0.443 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHH
Q 034611 18 VFVQNLLQQMQSRFQTMSDSIVTK-IDEMGNRINELEQSIND 58 (89)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~r-iDeMg~RIDdLEksI~d 58 (89)
..+..+|..|+.-+......+..| ++|+.+||+-|+..++.
T Consensus 42 ~~i~~~~~~L~~v~~~~~~~~~kr~~~D~~KRL~iLfd~ln~ 83 (157)
T PF07304_consen 42 QPIEEVLRELQRVLEACPPSIKKRVVDDIEKRLNILFDHLNN 83 (157)
T ss_dssp --HHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHcccccchhHHHHHHHHHHHHHHHHhc
Confidence 344555566666666666677777 59999999999988863
No 14
>PRK13182 racA polar chromosome segregation protein; Reviewed
Probab=85.97 E-value=6.8 Score=29.02 Aligned_cols=19 Identities=32% Similarity=0.623 Sum_probs=17.5
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 034611 41 KIDEMGNRINELEQSINDL 59 (89)
Q Consensus 41 riDeMg~RIDdLEksI~dL 59 (89)
-||||-++|-.||..|..+
T Consensus 126 e~ee~~~~l~~le~~~~~~ 144 (175)
T PRK13182 126 EMEEMLERLQKLEARLKKL 144 (175)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999993
No 15
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=85.60 E-value=3.2 Score=26.19 Aligned_cols=36 Identities=11% Similarity=0.473 Sum_probs=26.3
Q ss_pred HHHHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 26 QMQSRFQTMS---DSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 26 QmQ~kFqtmS---~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
.+.+++..++ ..+-.-+.+++..|+.|+++|.+||.
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~envk~ll~ 42 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENVKDLLS 42 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444 34446689999999999999999986
No 16
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=85.20 E-value=2.2 Score=26.90 Aligned_cols=31 Identities=29% Similarity=0.448 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 25 QQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 25 qQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
+.++.|+.. |=.|+|++..|++.||+..+.+
T Consensus 2 ~~i~e~l~~----ie~~l~~~~~~i~~lE~~~~~~ 32 (71)
T PF10779_consen 2 QDIKEKLNR----IETKLDNHEERIDKLEKRDAAN 32 (71)
T ss_pred HHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 456666644 4578888888888888775544
No 17
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=84.69 E-value=1.9 Score=30.32 Aligned_cols=21 Identities=14% Similarity=0.431 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHH
Q 034611 33 TMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 33 tmS~~I~~riDeMg~RIDdLE 53 (89)
..-+.|..+|..|+.|||.||
T Consensus 81 ktL~~I~~~L~~inkRLD~~E 101 (102)
T PF01519_consen 81 KTLQLILKTLQSINKRLDKME 101 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhcc
Confidence 444778899999999999987
No 18
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=84.56 E-value=7.6 Score=28.43 Aligned_cols=45 Identities=16% Similarity=0.409 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 18 VFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
+.+.+++.-++.++..++..|-..+.++..|+|.|..++.+-+.+
T Consensus 34 aql~~~~d~i~~~L~~l~~~l~~ll~~l~~~l~~l~~~L~~aln~ 78 (140)
T PF04513_consen 34 AQLTTILDAIQTQLNALSTDLTNLLADLDTRLDTLLTNLNDALNQ 78 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555566666666666666666666666666666555443
No 19
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=83.54 E-value=11 Score=26.94 Aligned_cols=48 Identities=21% Similarity=0.417 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 14 ADMTVFVQNLLQQMQ---SRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ---~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
.++-..+..++++|. .+|..... .+.||++|+..|..+-..+++++.-
T Consensus 59 Kevd~~~~~l~~~~~erqk~~~k~ae-~L~kv~els~~L~~~~~lL~~~v~~ 109 (131)
T PF10158_consen 59 KEVDQEIAKLLQQMVERQKRFAKFAE-QLEKVNELSQQLSRCQSLLNQTVPS 109 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555554 44555444 6788999999998888888877654
No 20
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=78.89 E-value=17 Score=25.90 Aligned_cols=50 Identities=16% Similarity=0.361 Sum_probs=31.4
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
+..+-.+.|-.=|+|+.+.....=..+..|||-+..+||+...-...+.+
T Consensus 40 ~m~~A~~~v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~ 89 (126)
T PF07889_consen 40 SMSDAVASVSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKD 89 (126)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 33444444444466666666666677888888888888876654444433
No 21
>PF09712 PHA_synth_III_E: Poly(R)-hydroxyalkanoic acid synthase subunit (PHA_synth_III_E)
Probab=78.88 E-value=12 Score=29.48 Aligned_cols=37 Identities=22% Similarity=0.483 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHH--------HHHHhhhHHHHHHHHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTK--------IDEMGNRINELEQSINDLR 60 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~r--------iDeMg~RIDdLEksI~dLm 60 (89)
+-.++.+++.+.+.++.- ||++.+||.+|++.+..|.
T Consensus 248 ~m~~r~~~~~~~e~~L~~l~lPTr~evd~l~k~l~eLrre~r~Lk 292 (293)
T PF09712_consen 248 LMDLRKQQQEVVEEYLRSLNLPTRSEVDELYKRLHELRREVRALK 292 (293)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 345677888888888844 8999999999999998773
No 22
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=78.63 E-value=15 Score=23.74 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=13.7
Q ss_pred HHHhhhHHHHHHHHHHHH
Q 034611 43 DEMGNRINELEQSINDLR 60 (89)
Q Consensus 43 DeMg~RIDdLEksI~dLm 60 (89)
...-.||+.||+-|+.|-
T Consensus 60 ~~~r~kl~~LEarl~~LE 77 (79)
T PF04380_consen 60 ARTREKLEALEARLAALE 77 (79)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 444678889999888874
No 23
>PF06705 SF-assemblin: SF-assemblin/beta giardin
Probab=76.16 E-value=14 Score=27.69 Aligned_cols=47 Identities=21% Similarity=0.436 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
.|...++.-++.|+++++ ..+..|.+.+..++|.|...|..|-....
T Consensus 63 ~lq~~~e~~i~~~~~~v~---~~~~~~~~~~~~~l~~L~~ri~~L~~~i~ 109 (247)
T PF06705_consen 63 KLQSKFEEQINNMQERVE---NQISEKQEQLQSRLDSLNDRIEALEEEIQ 109 (247)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555666665554 45667888888889999888888866543
No 24
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=75.62 E-value=13 Score=24.72 Aligned_cols=40 Identities=18% Similarity=0.416 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 19 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
-++..|+.+..+|..+...|-.|++-...+ ++||..|..|
T Consensus 5 ~le~al~rL~~aid~LE~~v~~r~~~~~~~-~~~e~ei~~l 44 (89)
T PF13747_consen 5 SLEAALTRLEAAIDRLEKAVDRRLERDRKR-DELEEEIQRL 44 (89)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHH
Confidence 356677778888888888888888776665 7777777554
No 25
>PF10158 LOH1CR12: Tumour suppressor protein; InterPro: IPR018780 This entry represents a region of 130 amino acids that is the most conserved part of some hypothetical proteins involved in loss of heterozygosity, and thus, tumour suppression []. The exact function of these proteins is not known.
Probab=75.21 E-value=18 Score=25.83 Aligned_cols=47 Identities=21% Similarity=0.323 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 18 VFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
.-|-+|-..+|++|..-++.|...=.....||.+.|..+.-++++++
T Consensus 27 ~~~l~Lc~R~Q~HL~~cA~~Va~~Q~~L~~riKevd~~~~~l~~~~~ 73 (131)
T PF10158_consen 27 RPVLRLCSRYQEHLNQCAEAVAFDQNALAKRIKEVDQEIAKLLQQMV 73 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45667888999999999999999999999999999999999988764
No 26
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=74.96 E-value=14 Score=32.05 Aligned_cols=49 Identities=20% Similarity=0.369 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------H-----------HHHHhhhHHHHHHHHHHHHH
Q 034611 13 TADMTVFVQNLLQQMQSRFQTMSDSIVT-----------------K-----------IDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~-----------------r-----------iDeMg~RIDdLEksI~dLm~ 61 (89)
..-....|+..|+|+|+||.....+.-. + +..+-..|.+|+..|.|||-
T Consensus 373 ~e~~kk~~e~k~~q~q~k~~k~~kel~~~~E~n~~l~knq~vw~~kl~~~~e~~~~~~~s~d~~I~dLqEQlrDlmf 449 (493)
T KOG0804|consen 373 LEAEKKIVERKLQQLQTKLKKCQKELKEEREENKKLIKNQDVWRGKLKELEEREKEALGSKDEKITDLQEQLRDLMF 449 (493)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhe
Confidence 3445677889999999999876665431 1 34455678899999999984
No 27
>PF04513 Baculo_PEP_C: Baculovirus polyhedron envelope protein, PEP, C terminus ; InterPro: IPR007601 Polyhedra are large crystalline occlusion bodies containing nucleopolyhedrovirus virions, and surrounded by an electron-dense structure called the polyhedron envelope or polyhedron calyx. The polyhedron envelope (associated) protein PEP is thought to be an integral part of the polyhedron envelope. PEP is concentrated at the surface of polyhedra, and is thought to be important for the proper formation of the periphery of polyhedra. It is thought that PEP may stabilise polyhedra and protect them from fusion or aggregation [].; GO: 0005198 structural molecule activity, 0019028 viral capsid, 0019031 viral envelope
Probab=74.87 E-value=26 Score=25.67 Aligned_cols=48 Identities=21% Similarity=0.457 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHh
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKI----DEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~ri----DeMg~RIDdLEksI~dLm~q 62 (89)
++..-+..|+..+..||++....+..+| |.+-.+|+.|..-++.|-..
T Consensus 49 ~l~~~l~~ll~~l~~~l~~l~~~L~~aln~Lq~~~rneLtnlnsil~nL~ss 100 (140)
T PF04513_consen 49 ALSTDLTNLLADLDTRLDTLLTNLNDALNQLQDTLRNELTNLNSILNNLTSS 100 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566677777888888888888888 66668899888888888754
No 28
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=74.58 E-value=17 Score=24.14 Aligned_cols=47 Identities=13% Similarity=0.344 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 67 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~ 67 (89)
+|+-+++++.++..+ .+|-.|||-++.|++.|+..++++-.=...+.
T Consensus 23 Lq~~V~~l~~~~~~v-~~l~~klDa~~~~l~~l~~~V~~I~~iL~~~~ 69 (75)
T PF05531_consen 23 LQTQVDDLESNLPDV-TELNKKLDAQSAQLTTLNTKVNEIQDILNPDI 69 (75)
T ss_pred HHHHHHHHHhcCCch-HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 344445555555443 25778999999999999988877766554433
No 29
>PF09903 DUF2130: Uncharacterized protein conserved in bacteria (DUF2130); InterPro: IPR019219 This entry, found in various hypothetical bacterial proteins, has no known function.
Probab=74.34 E-value=20 Score=28.07 Aligned_cols=47 Identities=19% Similarity=0.396 Sum_probs=37.9
Q ss_pred HHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034611 14 ADMTVF---VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 14 ~dLT~~---Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm 60 (89)
.+|+.| ....++-.-.+|..|+..+..-++.|-..+..||+.+..|+
T Consensus 187 ~~l~~fe~~~~~~~~~~~~~~~~~~~~l~ke~~~i~k~~~k~ek~~e~l~ 236 (267)
T PF09903_consen 187 EDLYNFEEEFRQFIEAIVENFEDMSKDLDKEIKAIDKAWKKREKQIEKLL 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344544 33445556677899999999999999999999999999998
No 30
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=73.63 E-value=17 Score=31.45 Aligned_cols=63 Identities=16% Similarity=0.272 Sum_probs=48.2
Q ss_pred CCCCCcCCHHHHHHHHHHHH-HHHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034611 5 DSEDPKQSTADMTVFVQNLL-QQMQSRFQ---TMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 67 (89)
Q Consensus 5 ~s~dpkqs~~dLT~~Vq~LL-qQmQ~kFq---tmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~ 67 (89)
.+.||.....=+.++++..+ +++..|++ .....|-.|+.+...+++..|+.+++...+.|+-.
T Consensus 235 ~~~dP~~Aa~ilN~la~~Yi~~~l~~k~~~a~~a~~fL~~qL~~l~~~L~~aE~~l~~fr~~~~~~d 301 (726)
T PRK09841 235 TGDDPQLITRILNSIANNYLQQNIARQAAQDSQSLEFLQRQLPEVRSELDQAEEKLNVYRQQRDSVD 301 (726)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 45677755555566666666 56777775 44677889999999999999999999999987643
No 31
>KOG4559 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.37 E-value=22 Score=25.58 Aligned_cols=44 Identities=23% Similarity=0.547 Sum_probs=32.9
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 15 DMTVFVQNL---LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 15 dLT~~Vq~L---LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
||.++.++| |..+.-||+.+.. .+..||+|+.-.|.||..-.-|
T Consensus 69 DMk~iAEkla~k~deLn~KfenL~P-~lqQIDaiddst~kLEaAa~~L 115 (120)
T KOG4559|consen 69 DMKQIAEKLAGKLDELNLKFENLAP-MLQQIDAIDDSTDKLEAAAAKL 115 (120)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHH
Confidence 455555554 7888889998754 5678999999999999865544
No 32
>PF00509 Hemagglutinin: Haemagglutinin; InterPro: IPR001364 Haemagglutinin (HA) is one of two main surface fusion glycoproteins embedded in the envelope of influenza viruses, the other being neuraminidase (NA). There are sixteen known HA subtypes (H1-H16) and nine NA subtypes (N1-N9), which together are used to classify influenza viruses (e.g. H5N1). The antigenic variations in HA and NA enable the virus to evade host antibodies made to previous influenza strains, accounting for recurrent influenza epidemics []. The HA glycoprotein is present in the viral membrane as a single polypeptide (HA0), which must be cleaved by the host's trypsin-like proteases to produce two peptides (HA1 and HA2) in order for the virus to be infectious. Once HA0 is cleaved, the newly exposed N-terminal of the HA2 peptide then acts to fuse the viral envelope to the cellular membrane of the host cell, which allows the viral negative-stranded RNA to infect the host cell. The type of host protease can influence the infectivity and pathogenicity of the virus. The haemagglutinin glycoprotein is a trimer containing three structurally distinct regions: a globular head consisting of anti-parallel beta-sheets that form a beta-sandwich with a jelly-roll fold (contains the receptor binding site and the HA1/HA2 cleavage site); a triple-stranded, coiled-coil, alpha-helical stalk; and a globular foot composed of anti-parallel beta-sheets [, ]. Each monomer consists of an intact HA0 polypeptide with the HA1 and HA2 regions linked by disulphide bonds. The N terminus of HA1 provides the central strand in the 5-stranded globular foot, while the rest of the HA1 chain makes its way to the 8-stranded globular head. HA2 provides two alpha helices, which form part of the triple-stranded coiled-coil that stabilises the trimer, its C terminus providing the remaining strands of the 5-stranded globular foot. This entry represents the entire haemagglutinin protein (HA0) consisting of both the HA1 and HA2 regions, as found in influenza A and B viruses.; GO: 0046789 host cell surface receptor binding, 0019064 viral envelope fusion with host membrane, 0019031 viral envelope; PDB: 2WR5_A 2IBX_A 2WR0_B 2WR1_C 2XN9_F 2WRF_I 3S11_E 3BT6_A 3SM5_E 2FK0_H ....
Probab=72.82 E-value=0.41 Score=41.65 Aligned_cols=44 Identities=25% Similarity=0.541 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 14 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
.++|.-|++|.+.|-.+|+.+. .++++.-+||++||+-+.|...
T Consensus 374 d~it~kvN~iiek~n~~fe~i~----~ef~~ve~Ri~~l~~~v~d~~~ 417 (550)
T PF00509_consen 374 DQITKKVNSIIEKMNKQFEQID----KEFNEVEKRIDNLEKKVDDKIA 417 (550)
T ss_dssp HHHHHHHHHHHHTTTCEEEECS----CSSSTTGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccchhhHH----HHHHHHHHHHHHHHHhhhccch
Confidence 4666667777777766665433 5677888888888888887664
No 33
>PF04508 Pox_A_type_inc: Viral A-type inclusion protein repeat ; InterPro: IPR007596 The repeat is found in the A-type inclusion protein of the Poxvirus family [].; GO: 0016032 viral reproduction
Probab=72.75 E-value=5 Score=21.48 Aligned_cols=19 Identities=32% Similarity=0.735 Sum_probs=15.1
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 034611 42 IDEMGNRINELEQSINDLR 60 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm 60 (89)
|+..-+||-|||+.+++-.
T Consensus 3 ~~rlr~rI~dLer~L~~C~ 21 (23)
T PF04508_consen 3 MNRLRNRISDLERQLSECR 21 (23)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 5666789999999998743
No 34
>PF06825 HSBP1: Heat shock factor binding protein 1; InterPro: IPR009643 Heat shock factor binding protein 1 (HSBP1) appears to be a negative regulator of the heat shock response [].; PDB: 3CI9_A.
Probab=72.43 E-value=14 Score=23.11 Aligned_cols=36 Identities=33% Similarity=0.470 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034611 25 QQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 25 qQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm 60 (89)
.-+++=++.|.+.+-+-=+.+-.|||+.-+.|.+|=
T Consensus 6 ~~v~~lL~qmq~kFq~mS~~I~~riDeM~~RIDdLE 41 (54)
T PF06825_consen 6 AFVQNLLQQMQDKFQTMSDQILGRIDEMSSRIDDLE 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHH
Confidence 334444555554443333445567777777777663
No 35
>KOG4117 consensus Heat shock factor binding protein [Transcription; Posttranslational modification, protein turnover, chaperones]
Probab=70.94 E-value=22 Score=23.69 Aligned_cols=38 Identities=21% Similarity=0.350 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 16 MTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
|-+-+|.-+|.|.+..=+=.+.+-+||||+-.-|.+|=
T Consensus 24 lLQq~QDkFQtMSDQII~RiDDM~~riDDLEKnIaDLm 61 (73)
T KOG4117|consen 24 LLQQTQDKFQTMSDQIIGRIDDMSSRIDDLEKNIADLM 61 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence 34444444444444333333333466666666666663
No 36
>KOG3759 consensus Uncharacterized RUN domain protein [Signal transduction mechanisms]
Probab=69.17 E-value=51 Score=29.30 Aligned_cols=57 Identities=30% Similarity=0.453 Sum_probs=46.3
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCC
Q 034611 8 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGS 68 (89)
Q Consensus 8 dpkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~ 68 (89)
=|+.|+.+|..-|++-|.|+-+-|. |-.|++ |.+-+.|-|||.-|+=|-.++|--..
T Consensus 199 i~~lsteelr~qVD~A~~q~VnP~k-~KeQLV---~QLkTQItDLErFInFlQ~e~~e~s~ 255 (621)
T KOG3759|consen 199 IDKLSTEELRRQVDDALKQLVNPFK-EKEQLV---DQLKTQITDLERFINFLQDEVGENSN 255 (621)
T ss_pred cccccHHHHHHHHHHHHHHHhChHH-HHHHHH---HHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 3677999999999999999999985 344443 67788999999999999888876443
No 37
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=68.79 E-value=5.5 Score=32.19 Aligned_cols=24 Identities=42% Similarity=0.757 Sum_probs=14.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHH
Q 034611 37 SIVTKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 37 ~I~~riDeMg~RIDdLEksI~dLm 60 (89)
.|-.||+++..||.+||..|.++-
T Consensus 141 ~l~~Ri~e~Eeris~lEd~~~~i~ 164 (370)
T PF02994_consen 141 SLNSRIDELEERISELEDRIEEIE 164 (370)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHh
Confidence 455677777777777777766543
No 38
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=68.29 E-value=27 Score=21.92 Aligned_cols=19 Identities=21% Similarity=0.511 Sum_probs=6.3
Q ss_pred HHHHhhhHHHHHHHHHHHH
Q 034611 42 IDEMGNRINELEQSINDLR 60 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm 60 (89)
||.+-.+|..|...|.++.
T Consensus 34 I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 34 IDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4444444444444444444
No 39
>PF04546 Sigma70_ner: Sigma-70, non-essential region; InterPro: IPR007631 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription. Transcription initiation from promoter elements requires a sixth, dissociable subunit called a sigma factor, which reversibly associates with the core RNA polymerase complex to form a holoenzyme []. RNA polymerase recruits alternative sigma factors as a means of switching on specific regulons. Most bacteria express a multiplicity of sigma factors. Two of these factors, sigma-70 (gene rpoD), generally known as the major or primary sigma factor, and sigma-54 (gene rpoN or ntrA) direct the transcription of a wide variety of genes. The other sigma factors, known as alternative sigma factors, are required for the transcription of specific subsets of genes. With regard to sequence similarity, sigma factors can be grouped into two classes, the sigma-54 and sigma-70 families. Sequence alignments of the sigma70 family members reveal four conserved regions that can be further divided into subregions eg. sub-region 2.2, which may be involved in the binding of the sigma factor to the core RNA polymerase; and sub-region 4.2, which seems to harbor a DNA-binding 'helix-turn-helix' motif involved in binding the conserved -35 region of promoters recognised by the major sigma factors [, ]. This domain is found in the primary vegetative sigma factor. Its function is unclear, and it can be removed without apparent loss of function [, ].; GO: 0003677 DNA binding, 0003700 sequence-specific DNA binding transcription factor activity, 0016987 sigma factor activity, 0006352 transcription initiation, DNA-dependent, 0006355 regulation of transcription, DNA-dependent; PDB: 1SIG_A 3IYD_F.
Probab=67.84 E-value=4.9 Score=29.57 Aligned_cols=48 Identities=25% Similarity=0.371 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHH------HHHHHHHHHHHHHhhhHHHHHHHHHHHH-HhhCCC
Q 034611 19 FVQNLLQQMQSRFQ------TMSDSIVTKIDEMGNRINELEQSINDLR-AEMGVE 66 (89)
Q Consensus 19 ~Vq~LLqQmQ~kFq------tmS~~I~~riDeMg~RIDdLEksI~dLm-~qaG~e 66 (89)
-.+.++++|..-|. ..-+.|+..|-.+-.||..+|+.|-+|. .++|+.
T Consensus 107 ~~~~~~~~l~~~~~~ikl~~k~id~L~~~lr~~~~~Ir~~Er~i~~l~v~~~gmp 161 (211)
T PF04546_consen 107 KYQKLREELAEEFMEIKLSPKQIDRLVEQLREIVERIRQQERRIMRLCVRRAGMP 161 (211)
T ss_dssp HHHHHHHHHHHHHTTCEE-HHHHHHHCHHHHCCCHHHHHHHHHHHHCCCTTTT--
T ss_pred HHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 46778888888885 4567777888899999999999999999 888874
No 40
>PF00170 bZIP_1: bZIP transcription factor cAMP response element binding (CREB) protein signature fos transforming protein signature jun transcription factor signature; InterPro: IPR011616 The basic-leucine zipper (bZIP) transcription factors [, ] of eukaryotic are proteins that contain a basic region mediating sequence-specific DNA-binding followed by a leucine zipper region (see IPR002158 from INTERPRO) required for dimerization.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0043565 sequence-specific DNA binding, 0046983 protein dimerization activity, 0006355 regulation of transcription, DNA-dependent; PDB: 2H7H_B 2OQQ_B 1S9K_E 1JNM_A 1JUN_A 1FOS_H 1A02_J 1T2K_C 1CI6_A 1DH3_C ....
Probab=67.63 E-value=25 Score=21.25 Aligned_cols=37 Identities=14% Similarity=0.514 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 22 NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
..+++|+.++..++ ...+.+..+++.|+..+..|-.+
T Consensus 26 ~~~~~Le~~~~~L~----~en~~L~~~~~~L~~~~~~L~~e 62 (64)
T PF00170_consen 26 QYIEELEEKVEELE----SENEELKKELEQLKKEIQSLKSE 62 (64)
T ss_dssp HHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHhh
Confidence 45677777776655 56677888888888888887664
No 41
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=67.54 E-value=60 Score=28.09 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 26 QMQSRFQTMSDSIV---TKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 26 QmQ~kFqtmS~~I~---~riDeMg~RIDdLEksI~dLm~qa 63 (89)
+++.+|..+-.+.= .+..++..||++||..+..|-.|.
T Consensus 80 ELEKqLaaLrqElq~~saq~~dle~KIkeLEaE~~~Lk~Ql 120 (475)
T PRK13729 80 QMQKQYEEIRRELDVLNKQRGDDQRRIEKLGQDNAALAEQV 120 (475)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 34455555533322 455778889999999999998886
No 42
>PHA03332 membrane glycoprotein; Provisional
Probab=66.96 E-value=16 Score=35.01 Aligned_cols=48 Identities=15% Similarity=0.290 Sum_probs=33.6
Q ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 14 ADMTVFVQNL---LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 14 ~dLT~~Vq~L---LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
+++.+.|+.| ..+|-++...+|..+-.+||+--.||++||.+|+.=+-
T Consensus 901 g~tNaAV~~lsDai~klGnti~kisatl~~nI~avNgRIs~Led~VN~r~~ 951 (1328)
T PHA03332 901 GGLNARVDKTSDVITKLGDTIAKISATLDNNIRAVNGRVSDLEDQVNLRFL 951 (1328)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHHhcccHHHHHHHHHHHHH
Confidence 3444444433 33666666777777778999999999999998876443
No 43
>PF05929 Phage_GPO: Phage capsid scaffolding protein (GPO) serine peptidase; InterPro: IPR009228 This entry is represented by Bacteriophage P2, GpO. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several bacteriophage capsid scaffolding protein (GpO) and some related bacterial sequences. GpO is thought to function in both the assembly of proheads and the cleavage of GpN [].; GO: 0019069 viral capsid assembly
Probab=66.75 E-value=50 Score=26.41 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=39.8
Q ss_pred CHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCC
Q 034611 12 STADMTVFVQNLLQQMQS-------RFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSP 69 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~-------kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~ 69 (89)
...+|...|+.+-++.++ +|.....++-....++..+++.|.+.+++|.++......+
T Consensus 193 ~~~~~~~ave~ia~~~~~~~~~~~~~ls~~~~~~~~~~~~l~~~~~~~~~~f~~L~~~L~~~~~~ 257 (276)
T PF05929_consen 193 QFADLQQAVEAIAEQQQELEEAFEEQLSEQETQVAELKQELKEQHEALTEDFAALKEKLSSTDAN 257 (276)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhCCCCC
Confidence 445666667666666655 3444455555556778888899999999999986654443
No 44
>PF11074 DUF2779: Domain of unknown function(DUF2779); InterPro: IPR021301 This domain is conserved in bacteria. The function is not known.
Probab=66.49 E-value=22 Score=24.98 Aligned_cols=38 Identities=16% Similarity=0.429 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034611 17 TVFVQNLLQQMQSR----------FQTMSDSIVTKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 17 T~~Vq~LLqQmQ~k----------FqtmS~~I~~riDeMg~RIDdLEksI~dLm 60 (89)
..++++|++.+... |+. +||.+|+.+..++++.|..+.
T Consensus 58 ~~~~~~L~~~i~~~~g~ivvyN~sfE~------~rL~ela~~~p~~~~~l~~I~ 105 (130)
T PF11074_consen 58 RELIEALIKAIGSIYGSIVVYNKSFEK------TRLKELAELFPDYAEKLNSII 105 (130)
T ss_pred HHHHHHHHHHhhhhcCeEEEechHHHH------HHHHHHHHHhHHHHHHHHHHH
Confidence 56899999999998 875 677777777766666666554
No 45
>PF12841 YvrJ: YvrJ protein family; InterPro: IPR024419 This entry is represents a family of uncharacterised protein. The function of the Bacillus subtilis YvrJ protein is not known, but its expression is regulated by the cell envelope stress-inducible sigma factor YvrI [].
Probab=65.90 E-value=7.4 Score=22.72 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=12.7
Q ss_pred HhhhHHHHHHHHHHHHH
Q 034611 45 MGNRINELEQSINDLRA 61 (89)
Q Consensus 45 Mg~RIDdLEksI~dLm~ 61 (89)
|-+|||+|.++|.+|..
T Consensus 20 ~E~kld~L~~~i~~L~~ 36 (38)
T PF12841_consen 20 IEKKLDELTESINELSE 36 (38)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 45778888888888765
No 46
>PRK14127 cell division protein GpsB; Provisional
Probab=65.87 E-value=43 Score=23.40 Aligned_cols=42 Identities=17% Similarity=0.454 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCC
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGV 65 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~ 65 (89)
|+..|+++-.-++.+. ..+.++-.++..|++.|.++-.+...
T Consensus 28 VD~FLd~V~~dye~l~----~e~~~Lk~e~~~l~~~l~e~~~~~~~ 69 (109)
T PRK14127 28 VDKFLDDVIKDYEAFQ----KEIEELQQENARLKAQVDELTKQVSV 69 (109)
T ss_pred HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 5555666666666554 45677888888888888888887663
No 47
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=65.48 E-value=41 Score=22.98 Aligned_cols=49 Identities=18% Similarity=0.287 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 13 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
...|...|...|.....=|.+-......++.++..+||.|++.|..-..
T Consensus 118 l~~m~~~v~~~l~~a~~al~~~d~~~~~~i~~~e~~id~l~~~i~~~~~ 166 (212)
T TIGR02135 118 LEKMGKLALKMLKDALDAFLNKDAELARQVAEMDERVDELYRQIFRELV 166 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666667766777888999999999999987765544
No 48
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=65.44 E-value=38 Score=24.16 Aligned_cols=44 Identities=16% Similarity=0.390 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
-|+.+|..+=.|| +.+|+.|-.-=+.++.|||.|..++.+.+.-
T Consensus 40 ~m~~A~~~v~kql----~~vs~~l~~tKkhLsqRId~vd~klDe~~ei 83 (126)
T PF07889_consen 40 SMSDAVASVSKQL----EQVSESLSSTKKHLSQRIDRVDDKLDEQKEI 83 (126)
T ss_pred hHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 3556666655555 4566666666788999999999998887653
No 49
>PF00103 Hormone_1: Somatotropin hormone family; InterPro: IPR001400 Somatotropin is a hormone that plays an important role in growth control. It belongs to a family that includes choriomammotropin (lactogen), its placental analogue; prolactin, which promotes lactation in the mammary gland, and placental prolactin-related proteins; proliferin and proliferin related protein; and somatolactin from various fish [, , , ]. The 3D structure of bovine somatotropin has been predicted using a combination of heuristics and energy minimisation [].; GO: 0005179 hormone activity, 0005576 extracellular region; PDB: 3HHR_A 1HUW_A 1KF9_D 1HGU_A 1HWG_A 1AXI_A 1A22_A 1BP3_A 1HWH_A 1F6F_A ....
Probab=65.37 E-value=15 Score=27.36 Aligned_cols=54 Identities=26% Similarity=0.425 Sum_probs=41.5
Q ss_pred CHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCC
Q 034611 12 STADMTVFVQNLLQ-------QMQSRF---QTMSDSIVTKIDEMGNRINELEQSINDLRAEMGV 65 (89)
Q Consensus 12 s~~dLT~~Vq~LLq-------QmQ~kF---qtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~ 65 (89)
+..+|..++-.||+ .+..-. ...++.|+.|.-++..+|.+|++-|..++.+.+.
T Consensus 89 s~~~LL~~~l~Ll~sW~~PL~~L~~~l~~~~~~~~~ilsk~~~i~~k~~~L~egi~~i~~~~~~ 152 (214)
T PF00103_consen 89 SDEDLLKLSLSLLQSWNEPLQHLVTELSSLPEAPDAILSKAKEIEEKIKELLEGIKKILSKMQD 152 (214)
T ss_dssp -HHHHHHHHHHHHHCTCCHHHHHHHHHHCCCSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred cHHHHHHHHHHHHHHHHhHHHHHHHHHhccCCCcHHHhchHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 45677777777754 444332 2447899999999999999999999999999883
No 50
>PF07439 DUF1515: Protein of unknown function (DUF1515); InterPro: IPR010889 This family consists of several hypothetical bacterial proteins of around 130 residues in length. Members of this family seem to be found exclusively in Rhizobium species. The function of this family is unknown.
Probab=65.21 E-value=33 Score=24.59 Aligned_cols=26 Identities=35% Similarity=0.650 Sum_probs=21.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 37 SIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 37 ~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
.+-.||||+-.|+-.||.++..|-..
T Consensus 37 ~mhrRlDElV~Rv~~lEs~~~~lk~d 62 (112)
T PF07439_consen 37 SMHRRLDELVERVTTLESSVSTLKAD 62 (112)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHhh
Confidence 46688999999999999998887654
No 51
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=65.00 E-value=4.4 Score=30.54 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCCCC
Q 034611 30 RFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSP 71 (89)
Q Consensus 30 kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~~~ 71 (89)
-||.+..|+|.|+=.+ |.++|+.|..|+...|.......
T Consensus 128 ~FQDLTGQ~IkKVv~~---l~~vE~~L~~ll~~~g~~~~~~~ 166 (214)
T PF04344_consen 128 DFQDLTGQRIKKVVNL---LQEVEERLVQLLVIFGPEEEAAE 166 (214)
T ss_dssp THHHHHHHHHHHHHHH---HHHHHHTTTTTT-----------
T ss_pred hhhHHHHHHHHHHHHH---HHHHHHHHHHHHHHhCccccccc
Confidence 3788888888887655 77999999999999998876643
No 52
>PF03980 Nnf1: Nnf1 ; InterPro: IPR007128 NNF1 is an essential yeast gene required for proper spindle orientation, nucleolar and nuclear envelope structure and mRNA export [].
Probab=64.84 E-value=37 Score=22.35 Aligned_cols=20 Identities=20% Similarity=0.503 Sum_probs=13.6
Q ss_pred HHHhhhHHHHHHHHHHHHHh
Q 034611 43 DEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 43 DeMg~RIDdLEksI~dLm~q 62 (89)
-+.-.++|+|++=|.+-...
T Consensus 30 r~v~~kLneLd~Li~eA~~r 49 (109)
T PF03980_consen 30 RDVVEKLNELDKLIEEAKER 49 (109)
T ss_pred hhHHHHHHHHHHHHHHHHHh
Confidence 45677788888877665443
No 53
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=64.11 E-value=14 Score=25.04 Aligned_cols=29 Identities=21% Similarity=0.408 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 33 TMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 33 tmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
.+-++|-+.||-+=.|-|+|...+..|+.
T Consensus 33 s~LD~Lns~LD~LE~rnD~l~~~L~~LLe 61 (83)
T PF03670_consen 33 SMLDQLNSCLDHLEQRNDHLHAQLQELLE 61 (83)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 34455555555555555555555555554
No 54
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=63.77 E-value=33 Score=25.99 Aligned_cols=48 Identities=15% Similarity=0.297 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034611 13 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm 60 (89)
.++|..=+.+|=++++.+++.=+..+=.|=++++.|+..|++.=..|.
T Consensus 169 l~~~~~~m~~l~~~ie~~~~~q~~~le~~a~~lC~~l~~L~~~E~~L~ 216 (229)
T PF11101_consen 169 LQAFEQRMEGLQQQIEQEMEAQAQELEQKAQALCDSLQQLDQQEQQLQ 216 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444455555554455555555555555555544444443
No 55
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=63.16 E-value=48 Score=26.72 Aligned_cols=45 Identities=18% Similarity=0.364 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhHHHHHHHHHHHH
Q 034611 16 MTVFVQNLLQQMQSRFQTMSDSI-----VTKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I-----~~riDeMg~RIDdLEksI~dLm 60 (89)
|...++..|++-+.+|+.+...+ ..+|.....|++.|++.+.-.+
T Consensus 321 L~~a~~~~L~~~~~~L~~l~~rL~~lsP~~~L~r~~qrL~~L~~rL~~a~ 370 (438)
T PRK00286 321 LQRALERRLRLAKQRLERLSQRLQQQNPQRRIERAQQRLEQLEQRLRRAM 370 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555556665555444 2345666666777766655443
No 56
>PRK11546 zraP zinc resistance protein; Provisional
Probab=63.11 E-value=57 Score=23.86 Aligned_cols=50 Identities=16% Similarity=0.333 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHhh
Q 034611 14 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEM----------GNRINELEQSINDLRAEM 63 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeM----------g~RIDdLEksI~dLm~qa 63 (89)
+|=-+.+|.+.+..+.++..+=.+|..|=.|+ ..+|..|-+.|.+|..+.
T Consensus 46 ~EQQa~~q~I~~~f~~~t~~LRqqL~aKr~ELnALl~~~~pD~~kI~aL~kEI~~Lr~kL 105 (143)
T PRK11546 46 TEQQAAWQKIHNDFYAQTSALRQQLVSKRYEYNALLTANPPDSSKINAVAKEMENLRQSL 105 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 34445566666777777778888888886666 456777777777776543
No 57
>PRK10884 SH3 domain-containing protein; Provisional
Probab=62.64 E-value=65 Score=24.38 Aligned_cols=51 Identities=16% Similarity=0.314 Sum_probs=31.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
+..+.-.-++.=|..++.+...+-.+.-.+..+|..+++++++.|++|..+
T Consensus 90 ~~~~rlp~le~el~~l~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~L~~~ 140 (206)
T PRK10884 90 SLRTRVPDLENQVKTLTDKLNNIDNTWNQRTAEMQQKVAQSDSVINGLKEE 140 (206)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555666666666666666666666666666666666655543
No 58
>PF05440 MtrB: Tetrahydromethanopterin S-methyltransferase subunit B; InterPro: IPR008690 The N5-methyltetrahydromethanopterin: coenzyme M (2.1.1.86 from EC) of Methanosarcina mazei Go1 is a membrane-associated, corrinoid-containing protein that uses a transmethylation reaction to drive an energy-conserving sodium ion pump [].; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=62.12 E-value=13 Score=25.91 Aligned_cols=31 Identities=23% Similarity=0.441 Sum_probs=25.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 034611 42 IDEMGNRINELEQSINDLRAEMGVEGSPSPL 72 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~qaG~e~~~~~~ 72 (89)
+|..-.|||.||+-..||++..-.++++-.|
T Consensus 32 ~~pi~eqi~kLe~~addl~nsLdP~~~~l~S 62 (97)
T PF05440_consen 32 MDPINEQIDKLEKAADDLVNSLDPRTPPLNS 62 (97)
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCCCcccc
Confidence 6777889999999999999987766666444
No 59
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=62.07 E-value=70 Score=25.28 Aligned_cols=65 Identities=15% Similarity=0.235 Sum_probs=45.0
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCC
Q 034611 5 DSEDPKQSTADMTVFVQNLLQQM----QSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSP 69 (89)
Q Consensus 5 ~s~dpkqs~~dLT~~Vq~LLqQm----Q~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~ 69 (89)
.+.||.....=+.++++..++.. ...-......+-.++.+...++...|+.+.....+.|+-.+.
T Consensus 139 ~~~dp~~A~~i~n~~~~~y~~~~~~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~ 207 (444)
T TIGR03017 139 SGVDPRFAATVANAFAQAYIDTNIELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSD 207 (444)
T ss_pred eCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccC
Confidence 35667633333344444444322 233345677888999999999999999999999999987543
No 60
>PRK00965 tetrahydromethanopterin S-methyltransferase subunit B; Provisional
Probab=61.58 E-value=12 Score=25.95 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=25.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 034611 42 IDEMGNRINELEQSINDLRAEMGVEGSPSPL 72 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~qaG~e~~~~~~ 72 (89)
+|..-.|||.||+-..||++..-..+++-.|
T Consensus 33 ~~pi~E~i~kLe~~addL~nsLdP~~~~l~S 63 (96)
T PRK00965 33 MDPIEEEINKLEALADDLENSLDPRNPPLNS 63 (96)
T ss_pred chHHHHHHHHHHHHHHHHHhccCCCCChhhc
Confidence 5777789999999999999987766665444
No 61
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=61.50 E-value=34 Score=26.73 Aligned_cols=40 Identities=18% Similarity=0.438 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
|..++..|.++|..+ ..+++.+|+.|+.+-+++++++...
T Consensus 238 I~~~~~~l~~~~~~~----~~~~~~l~k~l~~a~~~~~~~~~~~ 277 (304)
T PF02646_consen 238 IAELAGKLYDRFGKF----VEHLEKLGKSLDKAVKSYNKAVGSL 277 (304)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566677777554 4677888888888888888877643
No 62
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=60.62 E-value=21 Score=29.14 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=27.4
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034611 11 QSTADMTVFVQNLLQQMQSRFQTMSDSIVTK 41 (89)
Q Consensus 11 qs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~r 41 (89)
.+..||-+++..|++|+|+.|..+..++-.|
T Consensus 219 Mt~~EL~qL~~~L~~qIq~vfeeLt~~vQEK 249 (285)
T PF06937_consen 219 MTLDELKQLNEKLLQQIQDVFEELTQQVQEK 249 (285)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999988877665
No 63
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=60.36 E-value=17 Score=29.20 Aligned_cols=11 Identities=55% Similarity=0.857 Sum_probs=7.1
Q ss_pred HHHHHHHHHHH
Q 034611 49 INELEQSINDL 59 (89)
Q Consensus 49 IDdLEksI~dL 59 (89)
|.+||+||.+|
T Consensus 208 ik~LEksi~EL 218 (297)
T KOG0810|consen 208 IKKLEKSIREL 218 (297)
T ss_pred HHHHHHHHHHH
Confidence 55667777665
No 64
>PRK04406 hypothetical protein; Provisional
Probab=60.04 E-value=9.1 Score=24.88 Aligned_cols=16 Identities=6% Similarity=0.266 Sum_probs=8.7
Q ss_pred hHHHHHHHHHHHHHhh
Q 034611 48 RINELEQSINDLRAEM 63 (89)
Q Consensus 48 RIDdLEksI~dLm~qa 63 (89)
.||.|++.+.-|..+.
T Consensus 40 ~I~~L~~ql~~L~~rl 55 (75)
T PRK04406 40 LITKMQDQMKYVVGKV 55 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566665555543
No 65
>COG5570 Uncharacterized small protein [Function unknown]
Probab=58.87 E-value=13 Score=23.89 Aligned_cols=30 Identities=17% Similarity=0.317 Sum_probs=25.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034611 38 IVTKIDEMGNRINELEQSINDLRAEMGVEG 67 (89)
Q Consensus 38 I~~riDeMg~RIDdLEksI~dLm~qaG~e~ 67 (89)
|-++|++.++|=-+||..|.+-|+.-+++.
T Consensus 3 ieshl~eL~kkHg~le~ei~ea~n~Ps~dd 32 (57)
T COG5570 3 IESHLAELEKKHGNLEREIQEAMNSPSSDD 32 (57)
T ss_pred HHHHHHHHHHhhchHHHHHHHHhcCCCcch
Confidence 678999999999999999999998655543
No 66
>PF03500 Cellsynth_D: Cellulose synthase subunit D; InterPro: IPR022798 Cellulose, an aggregate of unbranched polymers of beta-1,4-linked glucose residues, is the major component of wood and thus paper, and is synthesized by plants, most algae, some bacteria and fungi, and even some animals. The genes that synthesize cellulose in higher plants differ greatly from the well-characterised genes found in Acetobacter and Agrobacterium spp. More correctly designated as "cellulose synthase catalytic subunits", plant cellulose synthase (CesA) proteins are integral membrane proteins, approximately 1,000 amino acids in length. There are a number of highly conserved residues, including several motifs shown to be necessary for processive glycosyltransferase activity []. An operon encoding 4 proteins required for bacterial cellulose biosynthesis (bcs) in Acetobacter xylinus (Gluconacetobacter xylinus) has been isolated via genetic complementation with strains lacking cellulose synthase activity []. Nucleotide sequence analysis showed the cellulose synthase operon to consist of 4 genes, designated bcsA, bcsB, bcsC and bcsD, all of which are required for maximal bacterial cellulose synthesis in A. xylinum. The calculated molecular mass of the protein encoded by bcsD is 17.3kDa []. The function of BcsD is unknown. This entry represents the D subunit from bacterial cellulose synthase.; PDB: 3AJ1_B 3AJ2_A 3A8E_A.
Probab=58.72 E-value=59 Score=23.99 Aligned_cols=46 Identities=22% Similarity=0.502 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHHhhC
Q 034611 17 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNR------------INELEQSINDLRAEMG 64 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~R------------IDdLEksI~dLm~qaG 64 (89)
+-|++.|+.+|.+.-.. ++.-.-|-.||.| +++||++||.+....+
T Consensus 2 ~lFl~aLa~E~~~q~g~--~e~~~fLr~mG~rlA~r~PLp~~~Tv~~LE~~iN~~la~~~ 59 (144)
T PF03500_consen 2 SLFLRALAEEFEDQAGE--EELRAFLRRMGERLAARHPLPACETVADLERAINAVLARFD 59 (144)
T ss_dssp HHHHHHHHHHHHHHSHH--HHHHHHHHHHHHHHCTTB-----SSHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCC
Confidence 45777777666554432 1122234455555 6999999999988764
No 67
>PF15136 UPF0449: Uncharacterised protein family UPF0449
Probab=58.37 E-value=23 Score=24.60 Aligned_cols=32 Identities=31% Similarity=0.475 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034611 27 MQSRFQTMSDSIVTKIDEMGNRINELEQSIND 58 (89)
Q Consensus 27 mQ~kFqtmS~~I~~riDeMg~RIDdLEksI~d 58 (89)
|..|.+...+.+-.|.++|-..-++||+.|.+
T Consensus 65 ~NerLqqa~~~Lkkk~e~L~~age~Le~~i~~ 96 (97)
T PF15136_consen 65 MNERLQQARDQLKKKCEELRQAGEELERDIEQ 96 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 67888888899999999999999999999975
No 68
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=58.05 E-value=38 Score=21.37 Aligned_cols=36 Identities=25% Similarity=0.609 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHH---HHHHHHHhhhHHHHHHHHHHHH
Q 034611 25 QQMQSRFQTMSDSI---VTKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 25 qQmQ~kFqtmS~~I---~~riDeMg~RIDdLEksI~dLm 60 (89)
|+++.+|+.+-.++ ..+|..+.+.+.+++--+.+|.
T Consensus 1 Qe~~~~~~~l~~~l~~~~~q~~~l~~~~~~~~~~~~eL~ 39 (106)
T PF01920_consen 1 QELQNKFQELNQQLQQLEQQIQQLERQLRELELTLEELE 39 (106)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56677777655332 2333444444444444444443
No 69
>PF13887 MRF_C1: Myelin gene regulatory factor -C-terminal domain 1
Probab=57.01 E-value=7.7 Score=22.85 Aligned_cols=12 Identities=50% Similarity=0.880 Sum_probs=9.1
Q ss_pred HHHhhhHHHHHH
Q 034611 43 DEMGNRINELEQ 54 (89)
Q Consensus 43 DeMg~RIDdLEk 54 (89)
+...+|||+||+
T Consensus 24 ~~Le~rI~ele~ 35 (36)
T PF13887_consen 24 DNLETRIDELER 35 (36)
T ss_pred ccHHHHHHHHhh
Confidence 677778888775
No 70
>PF13864 Enkurin: Calmodulin-binding
Probab=56.39 E-value=55 Score=21.50 Aligned_cols=20 Identities=25% Similarity=0.569 Sum_probs=15.5
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 034611 40 TKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dL 59 (89)
.|=.+|-.+|+.||+.|.-|
T Consensus 74 ~rK~~lE~~L~qlE~dI~~l 93 (98)
T PF13864_consen 74 RRKEELEKELKQLEKDIKKL 93 (98)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44578888999999988754
No 71
>PRK11115 transcriptional regulator PhoU; Provisional
Probab=55.42 E-value=69 Score=23.01 Aligned_cols=50 Identities=14% Similarity=0.265 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 14 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
..|...|...|...-.-|.+-......+|-++-..||.|+..|.+.....
T Consensus 26 ~~M~~~v~~ml~~~~~al~~~d~~~~~~i~~~e~~id~l~~~I~~~l~~~ 75 (236)
T PRK11115 26 LTMGGLVEQQLSDAITAMHNQDAELAKRVIEGDHKVNMMEVAIDEACVRI 75 (236)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHChHHHHHHHHHHHHHHHHH
Confidence 34555566666666666666556777888888999999999888655554
No 72
>PRK13729 conjugal transfer pilus assembly protein TraB; Provisional
Probab=55.28 E-value=13 Score=31.96 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=12.0
Q ss_pred HHHHHHHHhhhHHHHHHHHH
Q 034611 38 IVTKIDEMGNRINELEQSIN 57 (89)
Q Consensus 38 I~~riDeMg~RIDdLEksI~ 57 (89)
.-.||+++.+.|..|++.+.
T Consensus 102 le~KIkeLEaE~~~Lk~Ql~ 121 (475)
T PRK13729 102 DQRRIEKLGQDNAALAEQVK 121 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34556666666666666653
No 73
>PF12462 Helicase_IV_N: DNA helicase IV / RNA helicase N terminal; InterPro: IPR022161 This domain family is found in bacteria and eukaryotes, and is approximately 170 amino acids in length. The family is found in association with PF00580 from PFAM. Nucleolin unwinds nucleic acid strands in the 5' to 3' direction with respect to the bound strand. It can unwind RNA-RNA duplexes, as well as DNA-DNA and DNA-RNA duplexes. Nucleolin is modulated by phosphorylation of serine and threonine residues in its N-terminal region.
Probab=55.20 E-value=57 Score=23.49 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034611 14 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 54 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEk 54 (89)
.+-..|...+.+.-|.-|.+|+..+...+..+-..|+.|+.
T Consensus 76 ~e~~~Fa~~l~~~wq~w~~~~~~~~~~~L~~~~~~i~~~~~ 116 (166)
T PF12462_consen 76 SEAQRFAHHLNQAWQQWSQEQSEQLAEVLPQWLQAIQRLSA 116 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 56778999999999999999999999999999888888764
No 74
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=54.51 E-value=60 Score=21.35 Aligned_cols=20 Identities=15% Similarity=0.481 Sum_probs=8.3
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 034611 40 TKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dL 59 (89)
.+|+.+...+++|++.+.+|
T Consensus 77 ~~i~~l~~~~~~l~~~~~el 96 (105)
T cd00632 77 LRIKRLERQEEDLQEKLKEL 96 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444443
No 75
>PRK06771 hypothetical protein; Provisional
Probab=54.49 E-value=35 Score=23.61 Aligned_cols=25 Identities=20% Similarity=0.425 Sum_probs=22.3
Q ss_pred HhhhHHHHHHHHHHHHHhhCCCCCC
Q 034611 45 MGNRINELEQSINDLRAEMGVEGSP 69 (89)
Q Consensus 45 Mg~RIDdLEksI~dLm~qaG~e~~~ 69 (89)
|-+|+..+|..++-++.+.|+.++.
T Consensus 28 ~~~~~k~ie~~L~~I~~~~Gi~~~~ 52 (93)
T PRK06771 28 TDARLKRMEDRLQLITKEMGIVDRE 52 (93)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCc
Confidence 4459999999999999999999876
No 76
>PF10975 DUF2802: Protein of unknown function (DUF2802); InterPro: IPR021244 This bacterial family of proteins has no known function.
Probab=54.44 E-value=13 Score=23.79 Aligned_cols=19 Identities=42% Similarity=0.740 Sum_probs=12.0
Q ss_pred HhhhHHHHHHHHHHHHHhh
Q 034611 45 MGNRINELEQSINDLRAEM 63 (89)
Q Consensus 45 Mg~RIDdLEksI~dLm~qa 63 (89)
||.||..||+.+..|..+-
T Consensus 3 ~g~~l~~l~~~l~~l~~~~ 21 (70)
T PF10975_consen 3 MGQRLAELEQQLKQLEDQQ 21 (70)
T ss_pred HhHHHHHHHHHHHHHHHHH
Confidence 5666666666666665543
No 77
>PF07400 IL11: Interleukin 11; InterPro: IPR020438 Interleukins (IL) are a group of cytokines that play an important role in the immune system. They modulate inflammation and immunity by regulating growth, mobility and differentiation of lymphoid and other cells. Interleukin-11 (IL-11) is a pleiotropic cytokine that stimulates megakaryocytopoiesis, resulting in increased production of platelets, as well as activating osteoclasts, inhibiting epithelial cell proliferation and apoptosis, and inhibiting macrophage mediator production. These functions may be particularly important in mediating the hematopoietic, osseous and mucosal protective effects of IL-11 []. The cytokine also possesses anti-inflammatory activity, and has been proposed as a therapeutic agent in the treatment of chronic inflammatory diseases, such as Crohn's disease and rheumatoid arthritis [].
Probab=53.86 E-value=33 Score=26.68 Aligned_cols=37 Identities=22% Similarity=0.402 Sum_probs=27.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCC--CCCCCCCCCC
Q 034611 40 TKIDEMGNRINELEQSINDLRAEMGVE--GSPSPLTPSK 76 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm~qaG~e--~~~~~~~~~~ 76 (89)
-++-.|.+||+.|=+.|.-||...... .+++|++|+.
T Consensus 124 p~lg~~~s~l~~Ll~~lq~lM~rl~~pq~~p~~PspP~~ 162 (199)
T PF07400_consen 124 PELGTMHSRLKRLLNRLQLLMSRLELPQLTPPSPSPPLP 162 (199)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCC
Confidence 347789999999999999998876555 5556665553
No 78
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=53.80 E-value=39 Score=27.24 Aligned_cols=62 Identities=11% Similarity=0.249 Sum_probs=41.9
Q ss_pred CCCCCcCCHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034611 5 DSEDPKQSTADMTVFVQNLLQQ----MQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66 (89)
Q Consensus 5 ~s~dpkqs~~dLT~~Vq~LLqQ----mQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e 66 (89)
.+.||.....=+.++++..++. -+.........|-.++++.-.++++.|+.+.+.+.+.|+-
T Consensus 129 ~~~dP~~Aa~i~n~l~~~yi~~~~~~~~~~~~~~~~fl~~ql~~~~~~L~~ae~~l~~f~~~~~~~ 194 (498)
T TIGR03007 129 EDKDPELAKDVVQTLLTIFVEETLGSKRQDSDSAQRFIDEQIKTYEKKLEAAENRLKAFKQENGGI 194 (498)
T ss_pred eCCCHHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 3566763333334444444443 2233345667777899999999999999999999988875
No 79
>smart00338 BRLZ basic region leucin zipper.
Probab=53.44 E-value=48 Score=19.96 Aligned_cols=36 Identities=11% Similarity=0.438 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 23 LLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 23 LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
-+++|+.+++.+. ....++..+|+.|+..+..|..+
T Consensus 27 ~~~~Le~~~~~L~----~en~~L~~~~~~l~~e~~~lk~~ 62 (65)
T smart00338 27 EIEELERKVEQLE----AENERLKKEIERLRRELEKLKSE 62 (65)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777776655 45677888888888888888765
No 80
>PRK00846 hypothetical protein; Provisional
Probab=53.12 E-value=32 Score=22.80 Aligned_cols=14 Identities=14% Similarity=-0.033 Sum_probs=5.8
Q ss_pred hHHHHHHHHHHHHH
Q 034611 48 RINELEQSINDLRA 61 (89)
Q Consensus 48 RIDdLEksI~dLm~ 61 (89)
.||.|...|.-|..
T Consensus 42 ~I~~L~~ql~~L~~ 55 (77)
T PRK00846 42 TGARNAELIRHLLE 55 (77)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444444443333
No 81
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=52.19 E-value=59 Score=24.50 Aligned_cols=45 Identities=18% Similarity=0.446 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 17 TVFVQNLLQQMQSRFQ-------TMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFq-------tmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
-...+.||..++.-|+ .+...|-.+|.+-..+++||...+.+...
T Consensus 155 l~~A~~LL~~v~~~~~~~~~~~~~l~~~i~~~L~~~~~kL~Dl~~~l~eA~~ 206 (264)
T PF06008_consen 155 LKEAEDLLSRVQKWFQKPQQENESLAEAIRDDLNDYNAKLQDLRDLLNEAQN 206 (264)
T ss_pred HHHHHHHHHHHHHHHhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456777888888773 55566777777788888888777776544
No 82
>PHA03395 p10 fibrous body protein; Provisional
Probab=51.95 E-value=75 Score=21.77 Aligned_cols=59 Identities=14% Similarity=0.327 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCCCC
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSPLTPSKTNS 79 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~~~~~~~~~~~ 79 (89)
+|+-+..++..|..+ +.|-.++|.-+..++.+...++.+-.=...+-|.-|-.|.+++.
T Consensus 23 lQ~~V~~l~~nlpdv-~~l~~kLdaq~~~Ltti~tkv~~I~diLnpdiPdlP~~~~~~~~ 81 (87)
T PHA03395 23 LQAAVDDVRANLPDV-TEINEKLDAQSASLDTISSAVDNITDILNPDIPDVPDVPVKPNR 81 (87)
T ss_pred HHHHHHHHHhcCCcH-HHHHHHHHhHHHHHHHHHHHHHHHHHccCCCCCCCCCCCCcccc
Confidence 344455566666654 35778888888888888876666555444444444444444433
No 83
>PF15134 DUF4570: Domain of unknown function (DUF4570)
Probab=51.73 E-value=84 Score=22.28 Aligned_cols=44 Identities=23% Similarity=0.343 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHhhhHHHHHHHHH
Q 034611 14 ADMTVFVQNLLQQMQSRFQ----------TMSDSIVTKIDEMGNRINELEQSIN 57 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFq----------tmS~~I~~riDeMg~RIDdLEksI~ 57 (89)
.|+-+--.-|||+|+++|. ..+.....|=...=.-|+..|+++.
T Consensus 16 eEIlsqR~~LLq~mE~~~~~q~~~kk~~~~a~~~A~kRN~~LLqDie~~eksLq 69 (109)
T PF15134_consen 16 EEILSQREMLLQQMENKFGDQNTEKKSQQQASEAAKKRNKQLLQDIEAAEKSLQ 69 (109)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4666677789999999995 3444455555555555666666663
No 84
>PF02524 KID: KID repeat; InterPro: IPR003900 This group of proteins contains the KID repeat as found in Borrelia and spirochete Repeat motif-containing proteins including RepA/Rep+, RepU and various Bdr proteins. RepA and related Borrelia proteins have been suggested to play an important genus-wide role in the biology of the Borrelia []. Bdr proteins are polymorphic inner membrane proteins produced by most Borrelia species []. The bdr genes of encode proteins that form three distinct subfamilies: BdrD, BdrE, and BdrF. bdr orthologues have been appear to be present in all Borrelia species that have been analysed []. It is thought that BdrF2 and the other proteins encoded by the operon form an inner-membrane-associated protein complex that may interact with DNA and which may act during transmission or in the early stages of infection [].
Probab=51.25 E-value=4.8 Score=18.34 Aligned_cols=10 Identities=30% Similarity=0.783 Sum_probs=7.7
Q ss_pred hHHHHHHHHH
Q 034611 48 RINELEQSIN 57 (89)
Q Consensus 48 RIDdLEksI~ 57 (89)
+||..|+|++
T Consensus 1 KID~VEknL~ 10 (11)
T PF02524_consen 1 KIDSVEKNLN 10 (11)
T ss_pred CcchHhhhcc
Confidence 4788888874
No 85
>PRK11519 tyrosine kinase; Provisional
Probab=51.23 E-value=89 Score=27.15 Aligned_cols=63 Identities=17% Similarity=0.264 Sum_probs=44.9
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHH-HHHH---HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034611 5 DSEDPKQSTADMTVFVQNLLQQM-QSRF---QTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 67 (89)
Q Consensus 5 ~s~dpkqs~~dLT~~Vq~LLqQm-Q~kF---qtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~ 67 (89)
.+.||.....=+.++++..+++. ..|+ +...+.|-.|+.+...+++..|+.+++...+-|+-.
T Consensus 235 ~~~dP~~Aa~iaN~l~~~Yi~~~~~~k~~~a~~a~~fL~~ql~~l~~~L~~aE~~l~~fr~~~~~vd 301 (719)
T PRK11519 235 TGEDREQIRDILNSITRNYLEQNIERKSEEASKSLAFLAQQLPEVRSRLDVAENKLNAFRQDKDSVD 301 (719)
T ss_pred EcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 35677644444555555554443 3343 356677889999999999999999999999988743
No 86
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=50.93 E-value=1.2e+02 Score=24.07 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=21.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhC
Q 034611 42 IDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~qaG 64 (89)
|++|-..|..|.+.|..|..+++
T Consensus 202 i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 202 IDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999988
No 87
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=50.60 E-value=1.1e+02 Score=23.12 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=10.9
Q ss_pred CHHHHHHHHHHHHHHHHHH
Q 034611 12 STADMTVFVQNLLQQMQSR 30 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~k 30 (89)
+...+-.-++.+|+.|+.|
T Consensus 124 ~l~~~l~ea~~mL~emr~r 142 (264)
T PF06008_consen 124 DLQRALAEAQRMLEEMRKR 142 (264)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3444455566677777544
No 88
>TIGR02135 phoU_full phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by Pfam model pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function.
Probab=50.10 E-value=80 Score=21.53 Aligned_cols=46 Identities=22% Similarity=0.302 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 14 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
..|...|...|...-.=|.+-......+|-++-.+||.|+..|...
T Consensus 15 ~~m~~~~~~ml~~~~~~~~~~d~~~~~~i~~~e~~id~l~~~i~~~ 60 (212)
T TIGR02135 15 LEMGGLVEEQLEDAVRALTEKDRELARKVIEDDDQINALEVKIEEK 60 (212)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHChHHHHHHHHHHHHH
Confidence 4456666667777777776666677888888899999999988763
No 89
>PRK03100 sec-independent translocase; Provisional
Probab=49.55 E-value=89 Score=22.69 Aligned_cols=45 Identities=9% Similarity=0.289 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhhHHHHHHHHHHHH
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKID-EMGNRINELEQSINDLR 60 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riD-eMg~RIDdLEksI~dLm 60 (89)
.|-.++..+ -+.-.+|..+...+-..++ +|+..+|+|.+.+.+|-
T Consensus 25 rLP~~~r~l-G~~vr~~R~~~~~~~~~~~~elg~e~~dlrk~l~el~ 70 (136)
T PRK03100 25 RLPGAIRWT-ARALRQARDYASGATSQLREELGPEFDDLRKPLGELQ 70 (136)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 444455443 3344567777777777774 78888999988766543
No 90
>PF04799 Fzo_mitofusin: fzo-like conserved region; InterPro: IPR006884 This entry represents the heptad repeat domain which is conserved at the C terminus of Fzo/mitofusion family of GTPases. Fzo is a mediator of mitochondrial fusion during spermatogenesis []. This conserved region is also found in the human mitofusin protein []. This domain forms a dimeric antiparallel coiled coil structure, which has been proposed to act as a mitochodrial tether before vesicle fusion [].; GO: 0003924 GTPase activity, 0006184 GTP catabolic process, 0008053 mitochondrial fusion, 0005741 mitochondrial outer membrane, 0016021 integral to membrane; PDB: 1T3J_A.
Probab=49.22 E-value=44 Score=25.20 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=5.4
Q ss_pred HHHHhhhHHHHHH
Q 034611 42 IDEMGNRINELEQ 54 (89)
Q Consensus 42 iDeMg~RIDdLEk 54 (89)
|+++..+|+.||.
T Consensus 129 I~~L~~~i~~le~ 141 (171)
T PF04799_consen 129 IKQLEKEIQRLEE 141 (171)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 91
>KOG0500 consensus Cyclic nucleotide-gated cation channel CNGA1-3 and related proteins [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=49.22 E-value=68 Score=28.31 Aligned_cols=55 Identities=18% Similarity=0.251 Sum_probs=47.9
Q ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034611 6 SEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 6 s~dpkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm 60 (89)
..+|+.+..+....+++.+..+|.||..+-+++-+..-.|-.|+-.||..+.-..
T Consensus 452 ~~~~~d~~E~~~~~Le~~~~~l~~Rl~~i~~e~~~~~~km~qr~~~le~~~~~~~ 506 (536)
T KOG0500|consen 452 MQDPSDDEEKRDESLENEVVLLQLRLARILDEYHSSQQKMKQRLSVLEKQLKPGI 506 (536)
T ss_pred ccCcccchhHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHhhhhc
Confidence 3456656777788889999999999999999999999999999999999998883
No 92
>PF10393 Matrilin_ccoil: Trimeric coiled-coil oligomerisation domain of matrilin; InterPro: IPR019466 This entry represents a short domain found the matrilin (cartilage matrix) proteins. It forms a coiled coil structure and contains a single cysteine residue at its start which is likely to form a di-sulphide bridge with a corresponding cysteine in an upstream EGF domain (IPR006209 from INTERPRO), thereby spanning the VWA domain of the protein (IPR002035 from INTERPRO).This domain is likely to be responsible for protein trimerisation []. ; PDB: 1AQ5_C.
Probab=49.09 E-value=59 Score=19.74 Aligned_cols=31 Identities=19% Similarity=0.435 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRI 49 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RI 49 (89)
.+-..|.+.|+.+..|+..|| .||..+-.||
T Consensus 16 ~FQ~~v~~~lq~Lt~kL~~vs----~RLe~LEn~~ 46 (47)
T PF10393_consen 16 AFQNKVTSALQSLTQKLDAVS----KRLEALENRL 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHhcc
Confidence 344556666666666654444 5555554443
No 93
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=48.96 E-value=1.1e+02 Score=26.40 Aligned_cols=63 Identities=19% Similarity=0.268 Sum_probs=46.0
Q ss_pred CCCCCcCCHHHHHHHHHHHHH-HHHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034611 5 DSEDPKQSTADMTVFVQNLLQ-QMQSRFQ---TMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 67 (89)
Q Consensus 5 ~s~dpkqs~~dLT~~Vq~LLq-QmQ~kFq---tmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~ 67 (89)
.+.||.....=+.++++..++ ++..|++ .....+-.||+++..++.+.|+.+.....+.|+-.
T Consensus 162 ~~~dP~~Aa~iaN~la~~Y~~~~~~~k~~~~~~a~~~L~~ql~~l~~~l~~aE~~l~~fk~~~~l~~ 228 (754)
T TIGR01005 162 RSEDPKLAAAIPDAIAAAYIAGQGAAKSESNTAAADFLAPEIADLSKQSRDAEAEVAAYRAQSDLLM 228 (754)
T ss_pred ecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 456777444444555555553 3455554 45788889999999999999999999999988864
No 94
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=48.89 E-value=80 Score=22.27 Aligned_cols=43 Identities=9% Similarity=0.285 Sum_probs=33.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 034611 10 KQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINEL 52 (89)
Q Consensus 10 kqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdL 52 (89)
++...+|-+=.+.+|.+.++||+..++.+..|.-++-.+=|+.
T Consensus 36 ~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~y 78 (104)
T COG4575 36 GDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDY 78 (104)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence 3445677777888888888999888888888888777776664
No 95
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=48.87 E-value=65 Score=22.94 Aligned_cols=28 Identities=32% Similarity=0.611 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 29 SRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 29 ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
+||.... =.||-+|+.||..||..+.=|
T Consensus 13 N~F~~~c---E~kL~~~e~~Lq~~E~~l~iL 40 (148)
T PF10152_consen 13 NRFASVC---EEKLSDMEQRLQRLEATLNIL 40 (148)
T ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 5564433 466777788888888777544
No 96
>PF05537 DUF759: Borrelia burgdorferi protein of unknown function (DUF759); InterPro: IPR008478 This entry consists of several uncharacterised proteins from Borrelia species including Borrelia burgdorferi and Borrelia garinii.
Probab=48.39 E-value=55 Score=28.15 Aligned_cols=30 Identities=17% Similarity=0.372 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCCCCCCC
Q 034611 49 INELEQSINDLRAEMGVEGSPSPLTPSKTNS 79 (89)
Q Consensus 49 IDdLEksI~dLm~qaG~e~~~~~~~~~~~~~ 79 (89)
.+.|=..|...|-..|-++ |++-+||++++
T Consensus 398 F~kLk~~lp~wm~~~~~~~-~~~~~~~~~~~ 427 (431)
T PF05537_consen 398 FDKLKSMLPKWMGGTGNDN-PKPQEEPKNQD 427 (431)
T ss_pred HHHHHHHhHHhhCCCCcCC-CCCCCCCCCCC
Confidence 6789999999999999888 54555566554
No 97
>PRK11166 chemotaxis regulator CheZ; Provisional
Probab=47.90 E-value=64 Score=24.94 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCC
Q 034611 30 RFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGV 65 (89)
Q Consensus 30 kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~ 65 (89)
-||.+..|+|.|+=.+ |.++|+.|..|+...+.
T Consensus 140 dFQDLTGQvI~kVi~~---v~~vE~~L~~ll~~~~~ 172 (214)
T PRK11166 140 DFQDLTGQVIKRMMDV---IQEIERQLLMVLLENIP 172 (214)
T ss_pred cchHhHhHHHHHHHHH---HHHHHHHHHHHHHHhCc
Confidence 4899999999998666 66899999999987764
No 98
>PF08776 VASP_tetra: VASP tetramerisation domain; InterPro: IPR014885 Vasodilator-stimulated phosphoprotein (VASP) is an actin cytoskeletal regulatory protein. This region corresponds to the tetramerisation domain which forms a right handed alpha helical coiled coil structure []. ; PDB: 1USE_A 1USD_A.
Probab=47.33 E-value=61 Score=19.41 Aligned_cols=30 Identities=20% Similarity=0.509 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034611 13 TADMTVFVQNLLQQMQSRFQTMSDSIVTKI 42 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~ri 42 (89)
..||-.+=|.+|+.|-.-|+.|=..||..|
T Consensus 2 ~~dle~~KqEIL~EvrkEl~K~K~EIIeA~ 31 (40)
T PF08776_consen 2 SSDLERLKQEILEEVRKELQKVKEEIIEAI 31 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358889999999999999999999998776
No 99
>COG1322 Predicted nuclease of restriction endonuclease-like fold, RmuC family [General function prediction only]
Probab=47.26 E-value=50 Score=28.02 Aligned_cols=47 Identities=2% Similarity=0.243 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHH
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRIN-ELEQSIND 58 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RID-dLEksI~d 58 (89)
...++.............+|..+..+.+.||+.|-.+++ .+++.+..
T Consensus 103 l~~~~~~~~~~i~e~~~~~~~el~~~~~~~Ll~~~~~~~e~f~e~l~~ 150 (448)
T COG1322 103 LSSEFQELANEIFEELNRRLAELNQQNLKQLLKPLREVLEKFREQLEQ 150 (448)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666777788888999999999999866544 45555554
No 100
>KOG2802 consensus Membrane protein HUEL (cation efflux superfamily) [General function prediction only]
Probab=46.79 E-value=50 Score=28.72 Aligned_cols=20 Identities=20% Similarity=0.539 Sum_probs=17.6
Q ss_pred HHHHHhhhHHHHHHHHHHHH
Q 034611 41 KIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 41 riDeMg~RIDdLEksI~dLm 60 (89)
-+|-||..||-|||+|..+.
T Consensus 473 ivd~lG~EvDRlEkel~~~~ 492 (503)
T KOG2802|consen 473 IVDTLGAEVDRLEKELKKRN 492 (503)
T ss_pred HHHHhhhHHHHHHHHHHHhC
Confidence 37999999999999998764
No 101
>PF03105 SPX: SPX domain; InterPro: IPR004331 The SPX domain is named after SYG1/Pho81/XPR1 proteins. This 180 residue length domain is found at the amino terminus of a variety of proteins. In the yeast protein SYG1, the N terminus directly binds to the G- protein beta subunit and inhibits transduction of the mating pheromone signal [] suggesting that all the members of this family are involved in G-protein associated signal transduction. The C-terminal of these proteins often have an EXS domain (IPR004342 from INTERPRO) []. The N-termini of several proteins involved in the regulation of phosphate transport, including the putative phosphate level sensors PHO81 from Saccharomyces cerevisiae and NUC-2 from Neurospora crassa, are also members of this family [, ]. NUC-2 contains several ankyrin repeats (IPR002110 from INTERPRO). Several members of this family are the XPR1 proteins: the xenotropic and polytropic retrovirus receptor confers susceptibility to infection with Murine leukemia virus (MLV) []. The similarity between SYG1, phosphate regulators and XPR1 sequences has been previously noted, as has the additional similarity to several predicted proteins, of unknown function, from Drosophila melanogaster, Arabidopsis thaliana, Caenorhabditis elegans, Schizosaccharomyces pombe, and Saccharomyces cerevisiae [, ]. In addition, given the similarities between XPR1 and SYG1 and phosphate regulatory proteins, it has been proposed that XPR1 might be involved in G-protein associated signal transduction [, , ] and may itself function as a phosphate sensor [].
Probab=46.67 E-value=1e+02 Score=21.77 Aligned_cols=50 Identities=18% Similarity=0.366 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
+....-..++..|..-++.+..-...+..++..|++.|++.|..+.....
T Consensus 88 ~~~~~~~~F~~~L~~El~KVn~Fy~~k~~el~~~~~~L~~ql~~l~~~~~ 137 (275)
T PF03105_consen 88 DNEESEEEFFELLDEELEKVNDFYKEKEKELRERLEELQKQLEELREQRS 137 (275)
T ss_pred hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33345556666667777777777888999999999999999998876554
No 102
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=46.64 E-value=32 Score=22.54 Aligned_cols=22 Identities=27% Similarity=0.560 Sum_probs=16.0
Q ss_pred HHHHHHHHHHhhhHHHHHHHHH
Q 034611 36 DSIVTKIDEMGNRINELEQSIN 57 (89)
Q Consensus 36 ~~I~~riDeMg~RIDdLEksI~ 57 (89)
.++..+.+-|-.||+-||+=+.
T Consensus 45 ~~L~~~a~rm~eRI~tLE~ILd 66 (75)
T TIGR02976 45 QELYAKADRLEERIDTLERILD 66 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 4555677788888988887553
No 103
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=46.58 E-value=74 Score=20.14 Aligned_cols=41 Identities=27% Similarity=0.466 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 22 NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
.+-..| .|+..-.-..-.|+.|.-.|..+|+..|..|-.++
T Consensus 15 ~~~eEL-~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ 55 (61)
T PF08826_consen 15 AIQEEL-TKVKSANLAFESKLQEAEKRNRELEQEIERLKKEM 55 (61)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444 35666666667888888888888888888887653
No 104
>PF07544 Med9: RNA polymerase II transcription mediator complex subunit 9; InterPro: IPR011425 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med9 of the Mediator complex. Subunit Med9 is part of the middle module of the Mediator complex []; this associates with the core polymerase subunits to form the RNA polymerase II holoenzyme. Med9 alternatively known as the chromosome segregation protein, CSE2 (P33308 from SWISSPROT) is required, along with CSE1 (P33307 from SWISSPROT) for accurate mitotic chromosome segregation in Saccharomyces cerevisiae (Baker's yeast) [].; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=46.05 E-value=80 Score=20.40 Aligned_cols=49 Identities=16% Similarity=0.396 Sum_probs=30.0
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 9 PKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 9 pkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
|..++.|+.+.+.. +..||+.+ ...+..+.+|++-+.+-|..|..|-.+
T Consensus 19 ~~~~~kd~~~~~~~----lk~Klq~a-r~~i~~lpgi~~s~eeq~~~i~~Le~~ 67 (83)
T PF07544_consen 19 PPLSSKDLDTATGS----LKHKLQKA-RAAIRELPGIDRSVEEQEEEIEELEEQ 67 (83)
T ss_pred CCCCHHHHHHHHHH----HHHHHHHH-HHHHHhCCCccCCHHHHHHHHHHHHHH
Confidence 44477777666555 67777774 344555666666666666666655443
No 105
>PF03310 Cauli_DNA-bind: Caulimovirus DNA-binding protein; InterPro: IPR004986 The gene III product (P15) of cauliflower mosaic virus (CaMV) is a DNA binding protein in which the DNA binding activity is located on its C-terminal part. A family of related proteins is expressed by other members of the Caulimoviridae.; GO: 0003677 DNA binding; PDB: 3F6N_A 3K4T_D.
Probab=45.41 E-value=78 Score=22.84 Aligned_cols=32 Identities=22% Similarity=0.342 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHH-HHHhhhHHHHH--HHHHHHHHh
Q 034611 31 FQTMSDSIVTKI-DEMGNRINELE--QSINDLRAE 62 (89)
Q Consensus 31 FqtmS~~I~~ri-DeMg~RIDdLE--ksI~dLm~q 62 (89)
|++--..|-+|| -||+.+||+-| +.|-+.+..
T Consensus 35 ~~e~lEsiAAKIIkDisdkIdkCeC~Kelle~Lk~ 69 (121)
T PF03310_consen 35 DQENLESIAAKIIKDISDKIDKCECNKELLEALKK 69 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHT-TTHHHHHHHHT-
T ss_pred hHHHHHHHHHHHHHHHHHHHHhchhhHHHHHHHhc
Confidence 334455666675 78999999997 767666654
No 106
>COG0783 Dps DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism]
Probab=45.34 E-value=43 Score=24.51 Aligned_cols=47 Identities=13% Similarity=0.403 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH----HHHHHHHHhhCCCCCCC
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE----QSINDLRAEMGVEGSPS 70 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE----ksI~dLm~qaG~e~~~~ 70 (89)
+-.+..+|+..=+++...+|+++.||-.|= .+..+++.-+.+.+.+.
T Consensus 46 F~~lHe~~ee~y~el~~~~DeiAERi~~LGg~p~~t~~~~~~~s~ike~~~ 96 (156)
T COG0783 46 FFALHEKLEELYEELAEHVDEIAERIRALGGVPLGTLSEYLKLSSIKEEPG 96 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHhCCCcccCC
Confidence 445688899999999999999999998773 35566666655555543
No 107
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=45.25 E-value=1.4e+02 Score=23.08 Aligned_cols=18 Identities=17% Similarity=0.359 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHhhC
Q 034611 47 NRINELEQSINDLRAEMG 64 (89)
Q Consensus 47 ~RIDdLEksI~dLm~qaG 64 (89)
.|||+||.-+.|++...|
T Consensus 86 ~kvD~lee~fdd~~d~l~ 103 (189)
T TIGR02132 86 EKVDLIEEFFDDKFDELE 103 (189)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 466777777777766655
No 108
>PF00517 GP41: Retroviral envelope protein; InterPro: IPR000328 This entry represents envelope proteins from a variety of retroviruses. It includes the GP41 subunit of the envelope protein complex from Human immunodeficiency virus (HIV) and Simian-Human immunodeficiency virus (SIV), which mediate membrane fusion during viral entry []. It has a core composed of a six-helix bundle and is folded by its trimeric N- and C-terminal heptad-repeats (NHR and CHR) []. Derivatives of this protein prevent HIV-1 from entering cell lines and primary human CD4+ cells in vitro [], making it an attractive subject of gene therapy studies against HIV and related retroviruses. The entry also represents envelop proteins from Bovine immunodeficiency virus, Feline immunodeficiency virus and Equine infectious anemia virus (EIAV) [, ], as well as the Gp36 protein from Mouse mammary tumor virus (MMTV) and Human endogenous retrovirus (HERV).; GO: 0005198 structural molecule activity, 0019031 viral envelope; PDB: 2EZO_B 2EZQ_B 2EZR_A 2JNR_B 1F23_D 2EZP_A 1JEK_A 2Q7C_A 2Q5U_A 2Q3I_A ....
Probab=44.98 E-value=1.2e+02 Score=22.63 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
.++.|..++..-..|-..|.-++.|+..||+-+.|-.-
T Consensus 30 ~e~~~~lL~l~v~gik~~V~~L~aRV~alE~~l~dq~l 67 (204)
T PF00517_consen 30 QEAQQHLLQLTVWGIKQGVKQLQARVLALERYLKDQQL 67 (204)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhhhhhhhhhhhhhhhHHHHHHHhhhHHH
Confidence 44556777766667777788899999999998877544
No 109
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=44.72 E-value=82 Score=21.21 Aligned_cols=20 Identities=15% Similarity=0.418 Sum_probs=10.2
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 034611 40 TKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dL 59 (89)
.+|-+|..+|+.|+..|..+
T Consensus 72 l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 72 LELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHhHHHHHHHHHHHH
Confidence 34455555555555555444
No 110
>PF02865 STAT_int: STAT protein, protein interaction domain; InterPro: IPR013799 The STAT protein (Signal Transducers and Activators of Transcription) family contains transcription factors that are specifically activated to regulate gene transcription when cells encounter cytokines and growth factors, hence they act as signal transducers in the cytoplasm and transcription activators in the nucleus []. Binding of these factors to cell-surface receptors leads to receptor autophosphorylation at a tyrosine, the phosphotyrosine being recognised by the STAT SH2 domain, which mediates the recruitment of STAT proteins from the cytosol and their association with the activated receptor. The STAT proteins are then activated by phosphorylation via members of the JAK family of protein kinases, causing them to dimerise and translocated to the nucleus, where they bind to specific promoter sequences in target genes. In mammals, STATs comprise a family of seven structurally and functionally related proteins: Stat1, Stat2, Stat3, Stat4, Stat5a and Stat5b, Stat6. STAT proteins play a critical role in regulating innate and acquired host immune responses. Dysregulation of at least two STAT signalling cascades (i.e. Stat3 and Stat5) is associated with cellular transformation. Signalling through the JAK/STAT pathway is initiated when a cytokine binds to its corresponding receptor. This leads to conformational changes in the cytoplasmic portion of the receptor, initiating activation of receptor associated members of the JAK family of kinases. The JAKs, in turn, mediate phosphorylation at the specific receptor tyrosine residues, which then serve as docking sites for STATs and other signalling molecules. Once recruited to the receptor, STATs also become phosphorylated by JAKs, on a single tyrosine residue. Activated STATs dissociate from the receptor, dimerise, translocate to the nucleus and bind to members of the GAS (gamma activated site) family of enhancers. The seven STAT proteins identified in mammals range in size from 750 and 850 amino acids. The chromosomal distribution of these STATs, as well as the identification of STATs in more primitive eukaryotes, suggest that this family arose from a single primordial gene. STATs share structurally and functionally conserved domains including: an N-terminal domain that strengthens interactions between STAT dimers on adjacent DNA-binding sites; a coiled-coil STAT domain that is implicated in protein-protein interactions; a DNA-binding domain with an immunoglobulin-like fold similar to p53 tumour suppressor protein; an EF-hand-like linker domain connecting the DNA-binding and SH2 domains; an SH2 domain (IPR000980 from INTERPRO) that acts as a phosphorylation-dependent switch to control receptor recognition and DNA-binding; and a C-terminal transactivation domain []. The crystal structure of the N terminus of Stat4 reveals a dimer. The interface of this dimer is formed by a ring-shaped element consisting of five short helices. Several studies suggest that this N-terminal dimerisation promotes cooperativity of binding to tandem GAS elements and with the transcriptional coactivator CBP/p300. This entry represents the N-terminal domain, which is responsible for protein interactions. This domain has a multi-helical structure that can be subdivided into two structural sub-domains.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0004871 signal transducer activity, 0006355 regulation of transcription, DNA-dependent, 0007165 signal transduction; PDB: 1BGF_A 1YVL_A.
Probab=44.40 E-value=84 Score=21.99 Aligned_cols=31 Identities=29% Similarity=0.432 Sum_probs=23.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMS--DSIVTKI 42 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS--~~I~~ri 42 (89)
...-.+.++++||++|+.+....+ +.++.|+
T Consensus 52 ~~~~A~~l~~~ll~~Lq~~~~~~~~~~~fl~~~ 84 (124)
T PF02865_consen 52 DESQASVLFQNLLQELQQQASRQSQEDNFLLQH 84 (124)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHT-HHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhcCcchhHHHH
Confidence 667789999999999999987765 3666664
No 111
>PRK06665 flgK flagellar hook-associated protein FlgK; Validated
Probab=44.21 E-value=1.6e+02 Score=25.57 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
|+++...++.+-..+-.+|+..-.+|+.|=+.|++|-.+..
T Consensus 155 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~qIa~LN~qI~ 195 (627)
T PRK06665 155 IHDRYRSLERIRDMANDEIEITVEEINNILRNIADLNEQIV 195 (627)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777777778888888888888888888877754
No 112
>PHA03385 IX capsid protein IX,hexon associated protein IX; Provisional
Probab=43.80 E-value=36 Score=25.10 Aligned_cols=28 Identities=18% Similarity=0.481 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 36 DSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 36 ~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
-.++.+++.++.|+.+|-+.+.+|..+.
T Consensus 103 ~~llaqLealsqqL~~ls~qv~~L~~~~ 130 (135)
T PHA03385 103 LVLLAQLEALSQQLQELSQQVAQLREQT 130 (135)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhch
Confidence 3567889999999999999999987763
No 113
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=43.56 E-value=1.3e+02 Score=24.70 Aligned_cols=40 Identities=20% Similarity=0.310 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHH
Q 034611 20 VQNLLQQMQSRFQTMSDSIV-----TKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~-----~riDeMg~RIDdLEksI~dL 59 (89)
++..|++.+.+++.+...+. .+|+..-.|+|.|++.+...
T Consensus 275 m~~~L~~~r~rL~~L~~RL~~~~P~~~L~~~~qrLd~L~~RL~~a 319 (432)
T TIGR00237 275 FDTLLHQKKARLEQLVASLQRQHPQNKLALQQLQFEKLEKRKQAA 319 (432)
T ss_pred HHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444433322 33555555666665555443
No 114
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=43.36 E-value=1.3e+02 Score=21.94 Aligned_cols=35 Identities=20% Similarity=0.338 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 28 QSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 28 Q~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
+..|.+-...+...+..-+..|++|++.|..+-.+
T Consensus 144 ~~~l~~~~~~l~~~l~~~~g~I~~L~~~I~~~~~~ 178 (184)
T PF05791_consen 144 SRNLKTDVDELQSILAGENGDIPQLQKQIENLNEE 178 (184)
T ss_dssp HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHTGG
T ss_pred HHHHHHhHHHHHHHHhcccCCHHHHHHHHHHHHHH
Confidence 45677777888888888888889999988887654
No 115
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=43.17 E-value=76 Score=21.13 Aligned_cols=17 Identities=18% Similarity=0.554 Sum_probs=7.0
Q ss_pred HHHhhhHHHHHHHHHHH
Q 034611 43 DEMGNRINELEQSINDL 59 (89)
Q Consensus 43 DeMg~RIDdLEksI~dL 59 (89)
+..-..|.+++++|..+
T Consensus 91 ~~l~~~l~e~q~~l~~~ 107 (110)
T TIGR02338 91 ERLREQLKELQEKIQEA 107 (110)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444443
No 116
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=43.06 E-value=1.4e+02 Score=23.89 Aligned_cols=35 Identities=17% Similarity=0.361 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHH---HHHHHHhhhHHHHHHHHHHHHH
Q 034611 27 MQSRFQTMSDSIV---TKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 27 mQ~kFqtmS~~I~---~riDeMg~RIDdLEksI~dLm~ 61 (89)
..+-|..++..|- .||.....||..+++.|..|..
T Consensus 34 ~~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~l~g 71 (297)
T PF11945_consen 34 SNDIFSRISARVERNRERLQAIQQRIEVAQAKIEKLQG 71 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3344444444433 5688899999999999998854
No 117
>PF09728 Taxilin: Myosin-like coiled-coil protein; InterPro: IPR019132 Taxilin contains an extraordinarily long coiled-coil domain in its C-terminal half and is ubiquitously expressed. It is a novel binding partner of several syntaxin family members and is possibly involved in Ca(2+)-dependent exocytosis in neuroendocrine cells []. Gamma-taxilin, described as leucine zipper protein Factor Inhibiting ATF4-mediated Transcription (FIAT), localises to the nucleus in osteoblasts and dimerises with ATF4 to form inactive dimers, thus inhibiting ATF4-mediated transcription [].
Probab=42.83 E-value=1.5e+02 Score=23.53 Aligned_cols=27 Identities=19% Similarity=0.492 Sum_probs=20.7
Q ss_pred HHHHHH----HHHHHhhhHHHHHHHHHHHHH
Q 034611 35 SDSIVT----KIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 35 S~~I~~----riDeMg~RIDdLEksI~dLm~ 61 (89)
|..+|. -|+.|+.+|-.||+....+..
T Consensus 235 SNe~F~tfk~Emekm~Kk~kklEKE~~~~k~ 265 (309)
T PF09728_consen 235 SNEVFETFKKEMEKMSKKIKKLEKENQTWKS 265 (309)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444553 489999999999998776654
No 118
>PF05546 She9_MDM33: She9 / Mdm33 family; InterPro: IPR008839 Members of this family are mitochondrial inner membrane proteins with a role in inner mitochondrial membrane organisation and biogenesis []. The yeast Mdm33 protein assembles into an oligomeric complex in the inner membrane where it performs homotypic protein-protein interactions. It has been suggested that Mdm33 plays a distinct role, possibly involved in fission of the mitochondrial inner membrane [].
Probab=41.86 E-value=1.7e+02 Score=22.84 Aligned_cols=47 Identities=21% Similarity=0.377 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHHh
Q 034611 16 MTVFVQNLLQQMQSRFQTMSDSIV-----TKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~-----~riDeMg~RIDdLEksI~dLm~q 62 (89)
++.-...++..+|.+|-+.|..+- +.|+.+=..|..+|..+.+....
T Consensus 3 ~~~~~~~~~d~lq~~i~~as~~lNd~TGYs~Ie~LK~~i~~~E~~l~~~r~~ 54 (207)
T PF05546_consen 3 LSKKLSFYMDSLQETIFTASQALNDVTGYSEIEKLKKSIEELEDELEAARQE 54 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455567788888999888887764 56888888888889888876553
No 119
>COG4582 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=41.68 E-value=1.5e+02 Score=23.73 Aligned_cols=48 Identities=25% Similarity=0.447 Sum_probs=37.4
Q ss_pred HHHHHHHH------------HHHHHHHHH--HHHHHHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034611 20 VQNLLQQM------------QSRFQTMSD--SIVTKIDEMGNRINELEQSINDLRAEMGVEG 67 (89)
Q Consensus 20 Vq~LLqQm------------Q~kFqtmS~--~I~~riDeMg~RIDdLEksI~dLm~qaG~e~ 67 (89)
|+.||+|| +.-|.++++ .|++|++==+.=+.+||+.=..|-...++++
T Consensus 18 ~E~L~~qle~~~t~~~~~q~~~ffrtl~dlldV~er~elkseLlKelerQ~q~l~~w~~vpg 79 (244)
T COG4582 18 IEFLIQQLEVNLTIVDHAQALHFFRTLSELLDVFERGEVRTELLKELDRQQQKLQTWIGVPG 79 (244)
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 56788887 355777776 5688888888888999999888888777664
No 120
>PF04336 DUF479: Protein of unknown function, DUF479; InterPro: IPR007431 This entry contains the Escherichia coli gene yajB, now renamed acpH, which encodes an ACP hydrolase. AcpH converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP []. A mutant E. coli strain having a total deletion of the acpH grows normally, showing that phosphodiesterase activity is not essential for growth, although it is required for turnover of the ACP prosthetic group in vivo. AcpH is found only in Gram-negative organisms suggesting that it plays a role in some aspect of lipid metabolism that is unique to these organisms. The most obvious of which is biosynthesis of lipid A. Because AcpH is a hydrolase, it could possibly be an editing enzyme that intercepts acyl-ACPs that would give an inappropriate lipid A structure if used as acyl donors []. ; GO: 0008770 [acyl-carrier-protein] phosphodiesterase activity, 0006633 fatty acid biosynthetic process
Probab=41.53 E-value=1e+02 Score=20.39 Aligned_cols=15 Identities=27% Similarity=0.494 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHH
Q 034611 15 DMTVFVQNLLQQMQS 29 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~ 29 (89)
.|..|++..-++++.
T Consensus 16 ~L~~f~~~~Y~~L~~ 30 (106)
T PF04336_consen 16 PLEDFAQRFYQQLEA 30 (106)
T ss_pred CHHHHHHHHHHHHHh
Confidence 455555555544443
No 121
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=41.24 E-value=1.1e+02 Score=20.39 Aligned_cols=23 Identities=9% Similarity=0.393 Sum_probs=16.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 034611 40 TKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm~q 62 (89)
.++.++..|||.+.+.+.+|-++
T Consensus 35 ~~v~~l~~klDa~~~~l~~l~~~ 57 (75)
T PF05531_consen 35 PDVTELNKKLDAQSAQLTTLNTK 57 (75)
T ss_pred CchHHHHHHHHHHHHHHHHHHHH
Confidence 44566777888888888777664
No 122
>PF02185 HR1: Hr1 repeat; InterPro: IPR000861 The HR1 repeat was first described as a three times repeated homology region of the N-terminal non-catalytic part of protein kinase PRK1(PKN) []. The first two of these repeats were later shown to bind the small G protein rho [, ] known to activate PKN in its GTP-bound form. Similar rho-binding domains also occur in a number of other protein kinases and in the rho-binding proteins rhophilin and rhotekin. Recently, the structure of the N-terminal HR1 repeat complexed with RhoA has been determined by X-ray crystallography []. It forms an antiparallel coiled-coil fold termed an ACC finger. This entry includes domains found within rho-associated protein kinases.; GO: 0007165 signal transduction, 0005622 intracellular; PDB: 1CXZ_B 3O0Z_C 2RMK_B 1URF_A.
Probab=40.99 E-value=55 Score=20.10 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
.+++++.+...-..+-.++-.+|.+=.++|+-|+..|..|.....
T Consensus 20 ae~m~~~~~t~~~~~~~~~~~~l~~s~~kI~~L~~~L~~l~~~~~ 64 (70)
T PF02185_consen 20 AENMLQAYSTDKKKVLSEAESQLRESNQKIELLREQLEKLQQRSQ 64 (70)
T ss_dssp HHHHHHHHCCHHCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCCHH
T ss_pred HHHHHHHHccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 455565542222224566778899999999999999999876543
No 123
>PF06875 PRF: Plethodontid receptivity factor PRF; InterPro: IPR010681 This family consists of several plethodontid receptivity factor (PRF) proteins which seem to be specific to Plethodon jordani (Jordan's salamander). PRF is a courtship pheromone produced by males increase female receptivity [].
Probab=40.73 E-value=86 Score=24.61 Aligned_cols=33 Identities=15% Similarity=0.337 Sum_probs=29.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCC
Q 034611 37 SIVTKIDEMGNRINELEQSINDLRAEMGVEGSP 69 (89)
Q Consensus 37 ~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~ 69 (89)
.+..++.+-..++.-|=-||+.+|++.|...++
T Consensus 131 ~L~~~Le~a~~~~qgL~sniaaIMtaLG~~~~~ 163 (214)
T PF06875_consen 131 ELLRQLEEARASAQGLLSNIAAIMTALGFPVPP 163 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 677889999999999999999999999997543
No 124
>PF01895 PhoU: PhoU domain; InterPro: IPR008170 This family contains phosphate regulatory proteins including PhoU. PhoU proteins are known to play a role in the regulation of phosphate uptake. The PhoU domain is composed of a three helix bundle []. The PhoU protein contains two copies of this domain. The domain binds to an iron cluster via its conserved E/DXXXD motif. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect; suggesting that the protein has some secondary function []. ; PDB: 2I0M_A 1T72_B 1T8B_A 1SUM_B 1VCT_A 2BKN_A 2BKP_A 2BKO_A.
Probab=40.22 E-value=76 Score=18.47 Aligned_cols=45 Identities=20% Similarity=0.373 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
.|...|..+|...-.=|.+-......++-++-..||.|...+..-
T Consensus 3 ~m~~~~~~~l~~~~~~~~~~d~~~a~~i~~~e~~id~~~~~~~~~ 47 (88)
T PF01895_consen 3 EMGELVEEMLDDAIEAFEERDSELAQEIIQLEEEIDELYREIRRQ 47 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 466677777777777777666667777777777777777777443
No 125
>COG2960 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=40.12 E-value=1.3e+02 Score=21.23 Aligned_cols=39 Identities=21% Similarity=0.453 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh---------------hhHHHHHHHHHHHHHhhC
Q 034611 26 QMQSRFQTMSDSIVTKIDEMG---------------NRINELEQSINDLRAEMG 64 (89)
Q Consensus 26 QmQ~kFqtmS~~I~~riDeMg---------------~RIDdLEksI~dLm~qaG 64 (89)
.++.+|-.+-...++|||=.+ .+++.||+-|..|=....
T Consensus 37 evE~~~r~~~q~~lnkLDlVsREEFdvq~qvl~rtR~kl~~Leari~~LEarl~ 90 (103)
T COG2960 37 EVEKAFRAQLQRQLNKLDLVSREEFDVQRQVLLRTREKLAALEARIEELEARLA 90 (103)
T ss_pred HHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445555555555555555433 246666666666655543
No 126
>PRK00286 xseA exodeoxyribonuclease VII large subunit; Reviewed
Probab=40.09 E-value=1.8e+02 Score=23.50 Aligned_cols=16 Identities=19% Similarity=0.515 Sum_probs=7.0
Q ss_pred HHHHhhhHHHHHHHHH
Q 034611 42 IDEMGNRINELEQSIN 57 (89)
Q Consensus 42 iDeMg~RIDdLEksI~ 57 (89)
++..-.+|+.|++.+.
T Consensus 307 l~~~~q~L~~l~~rL~ 322 (438)
T PRK00286 307 LAQQQQRLDRLQQRLQ 322 (438)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444444444444443
No 127
>COG4062 MtrB Tetrahydromethanopterin S-methyltransferase, subunit B [Coenzyme metabolism]
Probab=39.94 E-value=47 Score=23.67 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=25.6
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCCCC
Q 034611 38 IVTKIDEMGNRINELEQSINDLRAEMGVEGSPSP 71 (89)
Q Consensus 38 I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~~~ 71 (89)
|+--+|..-.||++||.-++||++......+|=.
T Consensus 29 i~ldv~pi~Eqi~kLe~~vddl~~sldPstp~ln 62 (108)
T COG4062 29 IFLDVDPIEEQIKKLETLVDDLENSLDPSTPPLN 62 (108)
T ss_pred EEEeccHHHHHHHHHHHHHHHHHhccCCCCCCcc
Confidence 4445788889999999999999997654444433
No 128
>PRK15374 pathogenicity island 1 effector protein SipB; Provisional
Probab=39.75 E-value=1.7e+02 Score=26.24 Aligned_cols=33 Identities=12% Similarity=0.182 Sum_probs=25.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 034611 40 TKIDEMGNRINELEQSINDLRAEMGVEGSPSPL 72 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm~qaG~e~~~~~~ 72 (89)
.+.|.--+++|++|+.+..|-.++--..|.+|.
T Consensus 148 ~~~~~Aq~~l~~aq~~l~~lq~~a~~~~P~sp~ 180 (593)
T PRK15374 148 KKTDTAKSVYDAAEKKLTQAQNKLQSLDPADPG 180 (593)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhhcCCCChh
Confidence 456667788999999999998887766666553
No 129
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=39.72 E-value=1.1e+02 Score=20.29 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=13.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 36 DSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 36 ~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
..+-.|++.+-.+|..||+.+..|-.
T Consensus 70 ~~l~~r~e~ie~~i~~lek~~~~l~~ 95 (110)
T TIGR02338 70 QELKEKKETLELRVKTLQRQEERLRE 95 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555555555555555555543
No 130
>KOG3681 consensus Alpha-catenin [Extracellular structures]
Probab=39.52 E-value=1e+02 Score=28.60 Aligned_cols=49 Identities=18% Similarity=0.337 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 14 ADMTVFVQNLLQQMQSRFQ--TMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFq--tmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
.-+..+++++|.++++.+. .-++.+-.-|+.|..|+.||.+.+...+.+
T Consensus 321 ~al~q~l~d~l~E~~~~~~~k~~~~~l~~ai~~l~kkl~dLrrqLr~a~~d 371 (835)
T KOG3681|consen 321 NALRQALQDLLSEYQSNAGRKGRSPALELAIDQLTKKLKDLKRQLRKAATD 371 (835)
T ss_pred HHHHHHHHHHHHHHHHHhhccccChhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567778888888888554 346677777999999999999998776554
No 131
>PF12205 GIT1_C: G protein-coupled receptor kinase-interacting protein 1 C term; InterPro: IPR022018 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF01412 from PFAM, PF00023 from PFAM, PF08518 from PFAM. GIT1 plays an important role in cell adhesion, motility, cytoskeletal remodeling and membrane trafficking. To perform this function, it localises p21-activated kinase (PAK) and PAK-interactive exchange factor to focal adhesions. Its activation is regulated by interaction between its paxillin-binding C-terminal and the LD motifs of paxillin. The C-terminal folds into a four helix bundle. ; PDB: 2JX0_A.
Probab=39.39 E-value=1.3e+02 Score=21.31 Aligned_cols=34 Identities=26% Similarity=0.416 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhh
Q 034611 14 ADMTVFVQNLLQQMQ----SRFQTMSDSIVTKIDEMGN 47 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ----~kFqtmS~~I~~riDeMg~ 47 (89)
..+|.-++.||.-+| ++|-..++.|...+.+|.+
T Consensus 19 E~vTk~IqeLl~aAQ~~~~~s~~pcae~I~~aV~~m~~ 56 (123)
T PF12205_consen 19 EQVTKRIQELLRAAQEGRHDSFAPCAERIRSAVTEMAA 56 (123)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHH
Confidence 345777788888777 5788888888888887753
No 132
>PF00210 Ferritin: Ferritin-like domain; InterPro: IPR008331 Ferritin is one of the major non-haem iron storage proteins in animals, plants, and microorganisms []. It consists of a mineral core of hydrated ferric oxide, and a multi-subunit protein shell that encloses the former and assures its solubility in an aqueous environment. In animals the protein is mainly cytoplasmic and there are generally two or more genes that encode closely related subunits - in mammals there are two subunits which are known as H(eavy) and L(ight). In plants ferritin is found in the chloroplast []. This entry represents the main structural domain of ferritin. The domain is also found in other ferritin-like proteins such as members of the DNA protection during starvation (DPS) family and bacterioferritins.; GO: 0008199 ferric iron binding, 0006879 cellular iron ion homeostasis; PDB: 1N1Q_C 4DYU_E 2YJJ_D 2YJK_B 2VXX_B 3FVB_A 2WLU_A 2XGW_A 2WLA_A 1Z4A_D ....
Probab=39.34 E-value=57 Score=20.67 Aligned_cols=30 Identities=23% Similarity=0.273 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034611 25 QQMQSRFQTMSDSIVTKIDEMGNRINELEQ 54 (89)
Q Consensus 25 qQmQ~kFqtmS~~I~~riDeMg~RIDdLEk 54 (89)
--+...|+.+++......|.++.||-.|.-
T Consensus 31 ~~l~~~~~~~a~e~~~h~~~l~e~i~~lgg 60 (142)
T PF00210_consen 31 PGLAKFFQDQAEEEREHADELAERILMLGG 60 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hhhHHHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 346777888888888888888888877654
No 133
>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane
Probab=38.97 E-value=2.2e+02 Score=23.75 Aligned_cols=46 Identities=15% Similarity=0.319 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 16 MTVFVQNLLQQMQSRFQTMSDS--------IVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~--------I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
|...|...-..|+.+|...-.. -+++|++|..||..||+.+...-.
T Consensus 346 l~~~l~~~~~e~~~~~~~~i~~~v~~Er~~~~~~l~~~~~~~~~le~~~~~~~~ 399 (582)
T PF09731_consen 346 LKNELREQAIELQREFEKEIKEKVEQERNGRLAKLAELNSRLKALEEALDARSE 399 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444555555566666643322 246789999999999988877654
No 134
>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea. Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st
Probab=38.94 E-value=1.1e+02 Score=20.03 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=11.9
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 37 SIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 37 ~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
.|-.|++.+..+|+.|++++.+|-.
T Consensus 67 ~Le~~~e~le~~i~~l~~~~~~l~~ 91 (105)
T cd00632 67 ELKERLETIELRIKRLERQEEDLQE 91 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444555555555555544443
No 135
>PF12896 Apc4: Anaphase-promoting complex, cyclosome, subunit 4; InterPro: IPR024790 Apc4 is one of the larger of the subunits of the anaphase-promoting complex (APC) or cyclosome. The anaphase-promoting complex is a multiprotein subunit E3 ubiquitin ligase complex that controls segregation of chromosomes and exit from mitosis in eukaryotes [, ]. Results in Caenorhabditis elegans show that the primary essential role of the spindle assembly checkpoint is not in the chromosome segregation process itself but rather in delaying anaphase onset until all chromosomes are properly attached to the spindle. The APC is likely to be required for all metaphase-to-anaphase transitions in a multicellular organism []. This entry represents the long domain downstream of the WD40 repeat/s that are present on the Apc4 subunits.
Probab=38.92 E-value=1.4e+02 Score=21.23 Aligned_cols=42 Identities=12% Similarity=0.391 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034611 17 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 58 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~d 58 (89)
..-+++|+.-+..-++.|....-.-+.+|.+++..++..+.+
T Consensus 26 ~~~i~~ll~yi~~~l~~i~~~w~~~~~~~~~~l~~~~~~l~~ 67 (210)
T PF12896_consen 26 SSQIQSLLRYIKDTLDAIQEEWEEALQEFDRKLTNLADELQE 67 (210)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455778888888888888888888888999999988876554
No 136
>COG5460 Uncharacterized conserved protein [Function unknown]
Probab=38.25 E-value=30 Score=23.59 Aligned_cols=21 Identities=24% Similarity=0.412 Sum_probs=17.8
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 034611 36 DSIVTKIDEMGNRINELEQSI 56 (89)
Q Consensus 36 ~~I~~riDeMg~RIDdLEksI 56 (89)
..|..|+++|..-|+.|||-+
T Consensus 60 a~i~ekl~d~te~l~~LEkpv 80 (82)
T COG5460 60 AVIEEKLADMTEELFALEKPV 80 (82)
T ss_pred HHHHHHHHHHHHHHHHHhccc
Confidence 467789999999999999854
No 137
>PRK08471 flgK flagellar hook-associated protein FlgK; Validated
Probab=37.88 E-value=2.3e+02 Score=24.64 Aligned_cols=41 Identities=15% Similarity=0.385 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
++++...++.+-..|-..|...-.+|+.|=++|++|-.+.-
T Consensus 148 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~qI~ 188 (613)
T PRK08471 148 IKDTRERLDTLQKKVNEELKVTVDEINSLGKQIAEINKQIK 188 (613)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666777777788888888899999999999987753
No 138
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=37.80 E-value=1.8e+02 Score=22.18 Aligned_cols=17 Identities=24% Similarity=0.616 Sum_probs=8.7
Q ss_pred HHHHhhhHHHHHHHHHH
Q 034611 42 IDEMGNRINELEQSIND 58 (89)
Q Consensus 42 iDeMg~RIDdLEksI~d 58 (89)
|...-.|||+|+..+..
T Consensus 193 l~~~~~~Ld~l~~rL~~ 209 (319)
T PF02601_consen 193 LEQQQQRLDELKQRLKQ 209 (319)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555555555555444
No 139
>PF12296 HsbA: Hydrophobic surface binding protein A; InterPro: IPR021054 Hydrophobic surface binding proteins are typically between 171 to 275 amino acids in length. Although the HsbA amino acid sequence suggests that HsbA may be hydrophilic, HsbA adsorbed to hydrophobic PBSA (Polybutylene succinate-co-adipate) surfaces in the presence of NaCl or CaCl2. When HsbA was adsorbed on the hydrophobic PBSA surfaces, it promoted PBSA degradation via the CutL1 polyesterase. CutL1 interacts directly with HsbA attached to the hydrophobic QCM electrode surface. These results suggest that when HsbA is adsorbed onto the PBSA surface, it recruits CutL1, and that when CutL1 is accumulated on the PBSA surface, it stimulates PBSA degradation []. This entry is also characterised by a antigenic cell wall galactomannoprotein in Aspergillus fumigatus, which is a protein of 284 amino acid residues. It contains a serine- and threonine-rich region for O glycosylation, a signal peptide, and a putative glycosylphosphatidyl inositol attachment signal sequence. Ultrastructural analysis showed that the protein is present in the cell walls of hyphae and conidia []. ; PDB: 3L1N_A.
Probab=37.51 E-value=84 Score=20.44 Aligned_cols=42 Identities=10% Similarity=0.343 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHH---HHH--HHHHHHHHHHHHhhhHHHHHHHH
Q 034611 15 DMTVFVQNLLQQMQSR---FQT--MSDSIVTKIDEMGNRINELEQSI 56 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~k---Fqt--mS~~I~~riDeMg~RIDdLEksI 56 (89)
.|...|..+|..+..| |.. .+..+...|..+-..-+.|...|
T Consensus 75 ~l~~~i~~~l~~l~~Kk~~f~~~g~~~~v~~~L~~l~~~~~~l~~al 121 (124)
T PF12296_consen 75 TLQPDIQDALNALIAKKPAFDAAGLCSVVRADLQDLKTASDALSDAL 121 (124)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHTT-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444332 332 34444444555555555554433
No 140
>PRK07521 flgK flagellar hook-associated protein FlgK; Validated
Probab=37.45 E-value=2.4e+02 Score=23.43 Aligned_cols=40 Identities=15% Similarity=0.234 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
++++...++.+...+-..|...-.+|+.|=++|++|-.+.
T Consensus 138 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I 177 (483)
T PRK07521 138 LNDASDAVQSARADADAEIADSVDTLNDLLAQFEDANNAV 177 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555566666666777777788888888888887765
No 141
>cd01043 DPS DPS protein, ferritin-like diiron-binding domain. DPS (DNA Protecting protein under Starved conditions) domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. Some DPS proteins nonspecifically bind DNA, protecting it from cleavage caused by reactive oxygen species such as the hydroxyl radicals produced during oxidation of Fe(II) by hydrogen peroxide. These proteins assemble into dodecameric structures, some form DPS-DNA co-crystalline complexes, and possess iron and H2O2 detoxification capabilities. Expression of DPS is induced by oxidative or nutritional stress, including metal ion starvation. Members of the DPS family are homopolymers formed by 12 four-helix bundle subunits that assemble with 23 symmetry into a hollow shell. The DPS ferroxidase site is unusual in that it is not located in a four-helix bundle as in ferritin, but is shared by 2-fold symmetry-related subunits providing the iron ligands. Many DPS sequences (e.g., E. coli) disp
Probab=37.44 E-value=73 Score=21.23 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+...|+....++..-+|+++.||-.|.
T Consensus 29 f~~lh~~l~e~~~~~~~~~D~lAERi~~lg 58 (139)
T cd01043 29 FFALHELFEELYDELREAIDEIAERIRALG 58 (139)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456778899999999999999999997764
No 142
>PF09580 Spore_YhcN_YlaJ: Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ); InterPro: IPR019076 This entry contains YhcN and YlaJ, which are predicted lipoproteins that have been detected as spore proteins but not vegetative proteins in Bacillus subtilis. Both appear to be expressed under control of the RNA polymerase sigma-G factor. The YlaJ-like members of this family have a low-complexity, strongly acidic, 40-residue C-terminal domain.
Probab=37.37 E-value=68 Score=22.41 Aligned_cols=29 Identities=24% Similarity=0.441 Sum_probs=23.2
Q ss_pred HHHHHHHHHHhhhH------HHHHHHHHHHHHhhC
Q 034611 36 DSIVTKIDEMGNRI------NELEQSINDLRAEMG 64 (89)
Q Consensus 36 ~~I~~riDeMg~RI------DdLEksI~dLm~qaG 64 (89)
..|+.||..|..+| +++++.|.+++...+
T Consensus 142 ~~~~~ri~~~~~~~~~g~~~~~~~~~~~~i~~r~~ 176 (177)
T PF09580_consen 142 PDIFDRIRNLANRIRNGRPVSGFNDEIKEIVRRMF 176 (177)
T ss_pred HHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhhC
Confidence 46788888888777 788999999987654
No 143
>TIGR00414 serS seryl-tRNA synthetase. This model represents the seryl-tRNA synthetase found in most organisms. This protein is a class II tRNA synthetase, and is recognized by the pfam model tRNA-synt_2b. The seryl-tRNA synthetases of two archaeal species, Methanococcus jannaschii and Methanobacterium thermoautotrophicum, differ considerably and are included in a different model.
Probab=37.34 E-value=2.3e+02 Score=23.24 Aligned_cols=54 Identities=20% Similarity=0.439 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHHH--------------HHHHHhhhHHHHHHHHHHHHHh-----hCCCCCCCCCCCCCC
Q 034611 24 LQQMQSRFQTMSDSIVT--------------KIDEMGNRINELEQSINDLRAE-----MGVEGSPSPLTPSKT 77 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~--------------riDeMg~RIDdLEksI~dLm~q-----aG~e~~~~~~~~~~~ 77 (89)
+++++.+....|.+|-. ++.++..+|..||+.+..+-.+ ..+.+-+.+.+|.-.
T Consensus 46 ~~~l~~erN~~sk~i~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~lPN~~~~~vP~g~ 118 (418)
T TIGR00414 46 IEELQAKRNELSKQIGKAKGQKKDKIEEIKKELKELKEELTELSAALKALEAELQDKLLSIPNIPHESVPVGK 118 (418)
T ss_pred HHHHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 66777777777766632 3455666777776666554442 347788887776543
No 144
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=37.31 E-value=1.5e+02 Score=24.94 Aligned_cols=38 Identities=24% Similarity=0.456 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
++.|++.|++--..|...+.|=-.|..-||..|+|++.
T Consensus 235 ~e~Lk~~~~~e~~~~~~~LqEEr~R~erLEeqlNd~~e 272 (395)
T PF10267_consen 235 IEKLKEQYQREYQFILEALQEERYRYERLEEQLNDLTE 272 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 45556666666667778888999999999999999986
No 145
>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters. It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.
Probab=37.05 E-value=78 Score=19.51 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=22.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 36 DSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 36 ~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
+.|-.||++.-..|-+||+-=..|..|
T Consensus 15 d~IEqkiedid~qIaeLe~KR~~Lv~q 41 (46)
T PF08946_consen 15 DNIEQKIEDIDEQIAELEAKRQRLVDQ 41 (46)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 456788999999999999988888776
No 146
>PF06667 PspB: Phage shock protein B; InterPro: IPR009554 This family consists of several bacterial phage shock protein B (PspB) sequences. The phage shock protein (psp) operon is induced in response to heat, ethanol, osmotic shock and infection by filamentous bacteriophages []. Expression of the operon requires the alternative sigma factor sigma54 and the transcriptional activator PspF. In addition, PspA plays a negative regulatory role, and the integral-membrane proteins PspB and PspC play a positive one [].; GO: 0006355 regulation of transcription, DNA-dependent, 0009271 phage shock
Probab=36.81 E-value=63 Score=21.26 Aligned_cols=21 Identities=24% Similarity=0.485 Sum_probs=14.7
Q ss_pred HHHHHHHHHHhhhHHHHHHHH
Q 034611 36 DSIVTKIDEMGNRINELEQSI 56 (89)
Q Consensus 36 ~~I~~riDeMg~RIDdLEksI 56 (89)
.++..+.+-|..||..||+=+
T Consensus 45 ~~L~~~a~rm~eRI~tLE~IL 65 (75)
T PF06667_consen 45 QELYEQAERMEERIETLERIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344556677888888888754
No 147
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=36.78 E-value=1.4e+02 Score=25.54 Aligned_cols=38 Identities=18% Similarity=0.475 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIN 57 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~ 57 (89)
+.++++++-.+++.--.+.+.++.++-.+||+|++.|+
T Consensus 378 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~el~~l~~~l~ 415 (650)
T TIGR03185 378 LEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKIS 415 (650)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34444444433333334444555555555555555543
No 148
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=36.56 E-value=1.5e+02 Score=20.93 Aligned_cols=21 Identities=24% Similarity=0.468 Sum_probs=13.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHH
Q 034611 38 IVTKIDEMGNRINELEQSIND 58 (89)
Q Consensus 38 I~~riDeMg~RIDdLEksI~d 58 (89)
...|+.|.-.+|+++.++|.+
T Consensus 56 ~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 56 RNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666655
No 149
>PRK09458 pspB phage shock protein B; Provisional
Probab=36.44 E-value=64 Score=21.52 Aligned_cols=19 Identities=32% Similarity=0.531 Sum_probs=13.3
Q ss_pred HHHHHHHHhhhHHHHHHHH
Q 034611 38 IVTKIDEMGNRINELEQSI 56 (89)
Q Consensus 38 I~~riDeMg~RIDdLEksI 56 (89)
+..+-+-|..||+-||+=+
T Consensus 47 L~~~A~rm~~RI~tLE~IL 65 (75)
T PRK09458 47 LTEKAERMRERIQALEAIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3455667778888888744
No 150
>PF15469 Sec5: Exocyst complex component Sec5
Probab=36.36 E-value=1.5e+02 Score=20.82 Aligned_cols=49 Identities=14% Similarity=0.199 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034611 18 VFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 67 (89)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~ 67 (89)
.+++.++.+.+..-+.+-..+..||.++..-.++.++-|.-|+. .|+++
T Consensus 124 ~vf~~v~~eve~ii~~~r~~l~~~L~~~~~s~~~~~~~i~~Ll~-L~~~~ 172 (182)
T PF15469_consen 124 PVFQKVWSEVEKIIEEFREKLWEKLLSPPSSQEEFLKLIRKLLE-LNVEE 172 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHh-CCCCC
Confidence 45677788888888888889999999999999999999966554 55544
No 151
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=36.34 E-value=60 Score=27.49 Aligned_cols=31 Identities=23% Similarity=0.461 Sum_probs=25.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 034611 42 IDEMGNRINELEQSINDLRAEMGVEGSPSPL 72 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~qaG~e~~~~~~ 72 (89)
++-|..+||.|++.|.||-...-.+......
T Consensus 5 ~~~l~~~ld~l~~~l~d~~~~~~~e~~~~~~ 35 (422)
T KOG2336|consen 5 FKALLDDLDVLQKRLSDLKLELKLESSSENL 35 (422)
T ss_pred HHHHHHHHHHHHHHhhhhhhhccccccccCc
Confidence 6778899999999999999887777655443
No 152
>PF05164 ZapA: Cell division protein ZapA; InterPro: IPR007838 This entry a structural domain found in the cell division protein ZapA, as well as in related proteins. This domain has a core structure consisting of two layers alpha/beta, and has a long C-terminal helix that forms dimeric parallel and tetrameric antiparallel coiled coils []. ZapA interacts with FtsZ, where FtsZ is part of a mid-cell cytokinetic structure termed the Z-ring that recruits a hierarchy of fission related proteins early in the bacterial cell cycle. ZapA drives the polymerisation and filament bundling of FtsZ, thereby contributing to the spatio-temporal tuning of the Z-ring.; PDB: 1T3U_B 1W2E_B 3HNW_A.
Probab=36.31 E-value=1e+02 Score=18.92 Aligned_cols=10 Identities=0% Similarity=0.434 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 034611 27 MQSRFQTMSD 36 (89)
Q Consensus 27 mQ~kFqtmS~ 36 (89)
++.++.....
T Consensus 64 ~~~~~~~~~~ 73 (89)
T PF05164_consen 64 LKRELDELEE 73 (89)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 3344433333
No 153
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=35.62 E-value=2e+02 Score=21.98 Aligned_cols=27 Identities=22% Similarity=0.314 Sum_probs=22.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 38 IVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 38 I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
.....-+|+.-|+.+|+.|+.+|.+..
T Consensus 35 ~~~~~~~m~~i~~e~Ek~i~~~i~e~~ 61 (207)
T PF05010_consen 35 LHKENQEMRKIMEEYEKTIAQMIEEKQ 61 (207)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567999999999999999998743
No 154
>COG3206 GumC Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=35.52 E-value=2.1e+02 Score=23.12 Aligned_cols=50 Identities=26% Similarity=0.544 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCC
Q 034611 19 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGS 68 (89)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~ 68 (89)
++...++-=...|..-++.+..||.+...++..-|+.+.+-..+.|.-..
T Consensus 181 ~~~~~~~~~~~~~~~~~~~l~~~l~~lr~~~~~ae~~~~~~~~~~~l~~~ 230 (458)
T COG3206 181 YLADQLEAQLEAFRRASDSLDERLEELRARLQEAEAQVEDFRAQHGLTDA 230 (458)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 34444455567788999999999999999999999999999999987763
No 155
>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=35.18 E-value=87 Score=20.38 Aligned_cols=24 Identities=17% Similarity=0.544 Sum_probs=10.5
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 38 IVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 38 I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
|-.+++++-..|+.+++.++.|..
T Consensus 99 l~~~~~~l~~~~~~~~~~~~~l~~ 122 (129)
T cd00890 99 LEKQIEKLEKQLEKLQDQITELQE 122 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444433
No 156
>KOG4496 consensus Predicted coiled-coil protein [Function unknown]
Probab=35.15 E-value=1.9e+02 Score=22.31 Aligned_cols=33 Identities=18% Similarity=0.386 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034611 25 QQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 25 qQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm 60 (89)
-+|-++|.+....|+. +..-|||..++.++=|=
T Consensus 36 tefLN~F~n~cEd~La---d~elridq~d~kLnild 68 (194)
T KOG4496|consen 36 TEFLNNFGNKCEDILA---DAELRIDQADRKLNILD 68 (194)
T ss_pred HHHHHHHhHHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4566788777777664 44567777776665443
No 157
>PF05873 Mt_ATP-synt_D: ATP synthase D chain, mitochondrial (ATP5H); InterPro: IPR008689 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit D from the F0 complex in F-ATPases found in mitochondria. The D subunit is part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In mitochondria, the peripheral stalk is composed of one copy each of subunits OSCP (oligomycin sensitivity conferral protein), F6, B and D []. There is no homologue of subunit D in bacterial or chloroplast F-ATPase, whose peripheral stalks are composed of one copy of the delta subunit (homologous to OSCP), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o); PDB: 2CLY_E 2WSS_U.
Probab=34.94 E-value=55 Score=23.78 Aligned_cols=42 Identities=14% Similarity=0.216 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 21 QNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
++.+..++..+..+...+-.-+.+...||.+||+.|..+-..
T Consensus 84 d~~~~~i~~~e~~~~~~~~~~~~~s~~~i~~l~keL~~i~~~ 125 (161)
T PF05873_consen 84 DKQTKEIDAQEKEAIKEAKEFEAESKKRIAELEKELANIESA 125 (161)
T ss_dssp -TTTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445566666666666666666778888999999988887553
No 158
>COG4467 Regulator of replication initiation timing [Replication, recombination, and repair]
Probab=34.80 E-value=74 Score=22.87 Aligned_cols=28 Identities=18% Similarity=0.489 Sum_probs=15.3
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 37 SIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 37 ~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
.||..++.|..+|..|=+.|.+|..++|
T Consensus 5 eiFd~v~~le~~l~~l~~el~~lK~~l~ 32 (114)
T COG4467 5 EIFDQVDNLEEQLGVLLAELGGLKQHLG 32 (114)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555556666555555555555554444
No 159
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=34.70 E-value=1e+02 Score=24.95 Aligned_cols=40 Identities=20% Similarity=0.455 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHH--------HHHHHHhhhHHHHHHHHHHHHHh
Q 034611 23 LLQQMQSRFQTMSDSIV--------TKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 23 LLqQmQ~kFqtmS~~I~--------~riDeMg~RIDdLEksI~dLm~q 62 (89)
-|.++-+|+..||..=+ .-|++..+-|++|++.|.+|-.+
T Consensus 56 ~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~ 103 (301)
T PF06120_consen 56 SLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQ 103 (301)
T ss_pred hhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36788888888875322 33556666666666666666544
No 160
>PHA02604 rI.-1 hypothetical protein; Provisional
Probab=34.64 E-value=1.4e+02 Score=21.74 Aligned_cols=36 Identities=17% Similarity=0.435 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRIN 50 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RID 50 (89)
+-+.||++||+.-+.-|..+...+..-+||+-.-++
T Consensus 82 d~~~~l~~~l~~a~~i~~~l~s~L~N~~DdI~~~~~ 117 (126)
T PHA02604 82 DTIAFLDELLQEAEEIYKELPSALQSTLDDITGLCY 117 (126)
T ss_pred CHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 789999999999999999998888888888765443
No 161
>PHA03386 P10 fibrous body protein; Provisional
Probab=34.28 E-value=1.6e+02 Score=20.50 Aligned_cols=27 Identities=15% Similarity=0.430 Sum_probs=16.0
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034611 40 TKIDEMGNRINELEQSINDLRAEMGVE 66 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm~qaG~e 66 (89)
.++|..+..+++|...|+++-.=.+.+
T Consensus 36 ~~LDa~~~qL~~l~tkV~~Iq~iLn~d 62 (94)
T PHA03386 36 QPLDGLPAQLTELDTKVSDIQSILTGD 62 (94)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHhcCcc
Confidence 456666777777776665554444444
No 162
>PRK10626 hypothetical protein; Provisional
Probab=34.25 E-value=2.3e+02 Score=22.40 Aligned_cols=46 Identities=15% Similarity=0.218 Sum_probs=32.2
Q ss_pred HHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 16 MTVFVQNLL---QQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 16 LT~~Vq~LL---qQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
|++.+.+|= +.++.++..=+..+-.+=+++++|+..||..=.+|+.
T Consensus 188 l~~~m~~lgglq~~Ie~e~~~q~~d~~~~~~~vC~~~~~le~qr~~L~~ 236 (239)
T PRK10626 188 LQAVLGSLGGLQQAIQTEWKNQEKDFQQFGKDVCSRVVTLEDQRKALVG 236 (239)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444444443 6666666666677777778888888888888877775
No 163
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=34.16 E-value=1.4e+02 Score=19.73 Aligned_cols=29 Identities=24% Similarity=0.371 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 33 TMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 33 tmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
.|-.....|..+|.....+|++++.+|-.
T Consensus 28 ~mN~~~~~kY~~~~~~~~~l~~~~~~l~~ 56 (99)
T PF10046_consen 28 NMNKATSLKYKKMKDIAAGLEKNLEDLNQ 56 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444445555555555555555544433
No 164
>KOG1760 consensus Molecular chaperone Prefoldin, subunit 4 [Posttranslational modification, protein turnover, chaperones]
Probab=33.90 E-value=1.8e+02 Score=21.36 Aligned_cols=37 Identities=14% Similarity=0.442 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI 56 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI 56 (89)
|+.-|.++..+.+.--+.+-++++...+|+++|-+-+
T Consensus 82 ~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~L 118 (131)
T KOG1760|consen 82 LQDQLEEKKETLEKEIEELESELESISARMDELKKVL 118 (131)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555545555566666666666665543
No 165
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=33.65 E-value=1.2e+02 Score=22.60 Aligned_cols=18 Identities=28% Similarity=0.685 Sum_probs=6.9
Q ss_pred HHHHHHhhhHHHHHHHHH
Q 034611 40 TKIDEMGNRINELEQSIN 57 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~ 57 (89)
.|.+-+.++|+.|++.|.
T Consensus 193 ~~~~~l~~~~~~~~~~i~ 210 (239)
T PF07195_consen 193 SRIDSLNSQIKSLDKQIE 210 (239)
T ss_pred hHHHHHHHHHHHHHHHHH
Confidence 333333333333333333
No 166
>TIGR02492 flgK_ends flagellar hook-associated protein FlgK. The flagellar hook-associated protein FlgK of bacterial flagella has conserved N- and C-terminal domains. The central region is highly variable in length and sequence, and often contains substantial runs of low-complexity sequence. This model is built from an alignment of FlgK sequences with the central region excised. Note that several other proteins of the flagellar apparatus also are homologous in the N- and C-terminal regions to FlgK, but are excluded from this model.
Probab=33.56 E-value=2.3e+02 Score=22.10 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
|+++...++.+-..+-..|...=.+|+.|=+.|++|-.+..
T Consensus 143 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~ll~~Ia~lN~~I~ 183 (322)
T TIGR02492 143 FNQTSNELQDLRKGINAEIKSAVTEINSLLKQIASLNKEIQ 183 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555666666667777777777778788877766643
No 167
>cd01111 HTH_MerD Helix-Turn-Helix DNA binding domain of the MerD transcription regulator. Helix-turn-helix (HTH) transcription regulator MerD. The putative secondary regulator of mercury resistance (mer) operons, MerD, has been shown to down-regulate the expression of this operon in gram-negative bacteria. It binds to the same operator DNA as MerR that activates transcription of the operon in the presence of mercury ions. The MerD protein shares the N-terminal DNA binding domain with other transcription regulators of the MerR superfamily, which promote transcription by reconfiguring the spacer between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are conserved and contain predicted winged HTH motifs that mediate DNA binding, while the dissimilar C-terminal domains bind specific coactivator molecules such as metal ions, drugs,
Probab=33.50 E-value=1.5e+02 Score=19.79 Aligned_cols=29 Identities=14% Similarity=0.224 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 31 FQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 31 FqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
+......+..+|++.-.+++.|...+.+|
T Consensus 78 ~~~~~~~~~~~l~~~~~~L~~l~~~L~~~ 106 (107)
T cd01111 78 PEACLAQLRQKIEVRRAALNALTTQLAEM 106 (107)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44455566667777777777777776654
No 168
>KOG1511 consensus Mevalonate kinase MVK/ERG12 [Lipid transport and metabolism]
Probab=33.48 E-value=2.5e+02 Score=24.01 Aligned_cols=38 Identities=26% Similarity=0.462 Sum_probs=31.0
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034611 5 DSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGN 47 (89)
Q Consensus 5 ~s~dpkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~ 47 (89)
++.-|+ |+.+|-+-|..++ .||-++-+.|+..||+.+.
T Consensus 236 nTrv~R-nTk~lVa~Vr~~~----~kfPevi~~i~~aid~is~ 273 (397)
T KOG1511|consen 236 NTRVPR-NTKALVAGVRELL----EKFPEVIKAIFDAIDEISL 273 (397)
T ss_pred ccccCc-cHHHHHHHHHHHH----HhhhHHHHHHHHHHHHHHH
Confidence 455677 8999888888776 8999999999999988764
No 169
>PRK05658 RNA polymerase sigma factor RpoD; Validated
Probab=33.44 E-value=2.2e+02 Score=24.45 Aligned_cols=32 Identities=16% Similarity=0.369 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034611 35 SDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66 (89)
Q Consensus 35 S~~I~~riDeMg~RIDdLEksI~dLm~qaG~e 66 (89)
-+.|+.+|-++..||..+|+.|..+...+|+.
T Consensus 273 id~Lv~~lr~~~~rIr~~Er~i~~~~~~~~m~ 304 (619)
T PRK05658 273 IDELVEQLRDINKRVRGQERELLRLVERLKMP 304 (619)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 34566677888999999999999977787764
No 170
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=33.23 E-value=32 Score=27.88 Aligned_cols=17 Identities=35% Similarity=0.704 Sum_probs=7.5
Q ss_pred HhhhHHHHHHHHHHHHH
Q 034611 45 MGNRINELEQSINDLRA 61 (89)
Q Consensus 45 Mg~RIDdLEksI~dLm~ 61 (89)
+..||..|+.+|.||=+
T Consensus 170 ~~k~i~~l~~kl~DlEn 186 (370)
T PF02994_consen 170 LEKRIKKLEDKLDDLEN 186 (370)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33444444444444443
No 171
>COG3416 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.21 E-value=82 Score=25.09 Aligned_cols=21 Identities=33% Similarity=0.485 Sum_probs=18.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034611 42 IDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~q 62 (89)
|--|+.+|.+||+.|.-|-..
T Consensus 57 Lk~a~~~i~eLe~ri~~lq~~ 77 (233)
T COG3416 57 LKKASTQIKELEKRIAILQAG 77 (233)
T ss_pred HHHHHHHHHHHHHHHHHHhcc
Confidence 677899999999999988663
No 172
>PLN02678 seryl-tRNA synthetase
Probab=32.96 E-value=3e+02 Score=23.24 Aligned_cols=52 Identities=12% Similarity=0.283 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHH-------------HHHHHhhhHHH-------HHHHHHHHHHhhCCCCCCCCCCCCCC
Q 034611 24 LQQMQSRFQTMSDSIVT-------------KIDEMGNRINE-------LEQSINDLRAEMGVEGSPSPLTPSKT 77 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~-------------riDeMg~RIDd-------LEksI~dLm~qaG~e~~~~~~~~~~~ 77 (89)
+++++.+...+|.+|-. ++..+..+|.. ||..|.+++. .+.+.|.|.+|.-.
T Consensus 49 ~e~lr~erN~~sk~I~~~k~~~~~~~~l~~~~~~Lk~ei~~le~~~~~~~~~l~~~~~--~iPNi~~~~VP~G~ 120 (448)
T PLN02678 49 LDSLRKEFNKLNKEVAKLKIAKEDATELIAETKELKKEITEKEAEVQEAKAALDAKLK--TIGNLVHDSVPVSN 120 (448)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCCCccCCCCC
Confidence 66777777777777742 23444444444 4555555554 47888888877543
No 173
>PF03233 Cauli_AT: Aphid transmission protein; InterPro: IPR004917 This protein is found in various caulimoviruses. It codes for an 18 kDa protein (PII), which is dispensable for infection but which is required for aphid transmission of the virus []. This protein interacts with the PIII protein []. ; GO: 0019089 transmission of virus
Probab=32.91 E-value=1.8e+02 Score=21.99 Aligned_cols=25 Identities=24% Similarity=0.644 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 38 IVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 38 I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
.+..+-+|+.||+.||..+..|-.+
T Consensus 109 ~l~~L~e~snki~kLe~~~k~L~d~ 133 (163)
T PF03233_consen 109 LLPTLEEISNKIRKLETEVKKLKDN 133 (163)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhh
Confidence 4556788888888888888777665
No 174
>PF14931 IFT20: Intraflagellar transport complex B, subunit 20
Probab=32.89 E-value=1.7e+02 Score=20.47 Aligned_cols=38 Identities=16% Similarity=0.470 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 034611 13 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINE 51 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDd 51 (89)
+++|-.--......+. .|+.++..++.-++..+.+|+.
T Consensus 22 t~~Lk~ec~~F~~ki~-~F~~iv~~~~~~~~~~A~~VE~ 59 (120)
T PF14931_consen 22 TQELKEECKEFVEKIS-EFQKIVKGFIEILDELAKRVEN 59 (120)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 4455444444555554 5999999999999999988853
No 175
>cd01052 DPSL DPS-like protein, ferritin-like diiron-binding domain. DPSL (DPS-like). DPSL is a phylogenetically distinct class within the ferritin-like superfamily, and similar in many ways to the DPS (DNA Protecting protein under Starved conditions) proteins. Like DPS, these proteins are expressed in response to oxidative stress, form dodecameric cage-like particles, preferentially utilize hydrogen peroxide in the controlled oxidation of iron, and possess a short N-terminal extension implicated in stabilizing cellular DNA. This domain is a member of a broad superfamily of ferritin-like diiron-carboxylate proteins. These proteins are distantly related to bacterial ferritins which assemble 24 monomers, each of which have a four-helix bundle with a fifth shorter helix at the C terminus and a diiron (ferroxidase) center. Ferritins contain a center where oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical
Probab=32.88 E-value=1.1e+02 Score=20.30 Aligned_cols=30 Identities=13% Similarity=0.284 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+...|+..+.+...-+|.++.||-.|-
T Consensus 37 f~~l~~~~~~~~~ee~~Had~laEri~~lG 66 (148)
T cd01052 37 GEGIKEELEEAAEEELNHAELLAERIYELG 66 (148)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 445777888888888888888888887764
No 176
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=32.87 E-value=1.4e+02 Score=19.36 Aligned_cols=45 Identities=27% Similarity=0.476 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH------HHHHH-Hhhh-HHHHHHHHHHHHHhh
Q 034611 19 FVQNLLQQMQSRFQTMSDSIV------TKIDE-MGNR-INELEQSINDLRAEM 63 (89)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~------~riDe-Mg~R-IDdLEksI~dLm~qa 63 (89)
.+..+|..||+-|..|+-+.. ..||. +|.| =.+|+..|..|+..+
T Consensus 14 ~Ls~vl~~LqDE~~hm~~e~~~L~~~~~~~d~s~~~~~R~~L~~~l~~lv~~m 66 (79)
T PF06657_consen 14 ALSEVLKALQDEFGHMKMEHQELQDEYKQMDPSLGRRKRRDLEQELEELVKRM 66 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHH
Confidence 345566666666666654332 22322 2222 246888888777654
No 177
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=32.75 E-value=70 Score=20.17 Aligned_cols=10 Identities=40% Similarity=0.767 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 034611 29 SRFQTMSDSI 38 (89)
Q Consensus 29 ~kFqtmS~~I 38 (89)
.+|..++|.+
T Consensus 5 ~~f~eL~D~~ 14 (58)
T PF08653_consen 5 PQFAELSDSM 14 (58)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 178
>PF02108 FliH: Flagellar assembly protein FliH; InterPro: IPR018035 This entry represents a region found in the flagellar assembly protein FliH, as well as in type III secretion system protein HrpE. Many flagellar proteins are exported by a flagellum-specific export pathway. Attempts have been made to characterise the apparatus responsible for this process, by designing assays to screen for mutants with export defects. Experiments involving filament removal from temperature-sensitive flagellar mutants of Salmonella typhimurium have shown that, while most mutants were able to regrow filaments, flhA, fliH, fliI and fliN mutants showed no or greatly reduced regrowth. This suggests that the corresponding gene products are involved in the process of flagellum-specific export []. The sequence of fliH has been deduced and shown to encode a protein of molecular mass of 25,782 Da. Bacterial HrpE proteins are belived to function on the type III secretion system, specifically the secretion of HrpZ (harpinPss) [].
Probab=32.55 E-value=1.4e+02 Score=19.14 Aligned_cols=37 Identities=11% Similarity=0.321 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 034611 13 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRI 49 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RI 49 (89)
.+.|.++++.+-+.++..++.+...|+.-.=.+..||
T Consensus 4 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~iae~v 40 (128)
T PF02108_consen 4 QAELEQLLEELEEALQELLEELEQELVELALAIAEKV 40 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666666655555555444444443
No 179
>COG3159 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=32.50 E-value=39 Score=26.60 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=20.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhCC
Q 034611 42 IDEMGNRINELEQSINDLRAEMGV 65 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~qaG~ 65 (89)
|+-.-.||++||..|+.||.+|..
T Consensus 47 l~r~R~~~~~Le~~l~~L~~~A~~ 70 (218)
T COG3159 47 LARLRNRIRELEEELAALMENARA 70 (218)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455567999999999999998864
No 180
>PLN02554 UDP-glycosyltransferase family protein
Probab=32.40 E-value=1.8e+02 Score=23.96 Aligned_cols=50 Identities=16% Similarity=0.302 Sum_probs=43.9
Q ss_pred CHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 12 STADMTVFVQNLL---QQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 12 s~~dLT~~Vq~LL---qQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
+.++|...|..+| ..++.|-..++..+-..+.+-|+--.+|++=|.+|..
T Consensus 426 ~~e~l~~av~~vm~~~~~~r~~a~~l~~~~~~av~~gGss~~~l~~lv~~~~~ 478 (481)
T PLN02554 426 TAEEIERGIRCLMEQDSDVRKRVKEMSEKCHVALMDGGSSHTALKKFIQDVTK 478 (481)
T ss_pred cHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 6789999999999 4788899999999999999999988888888888765
No 181
>PRK09448 DNA starvation/stationary phase protection protein Dps; Provisional
Probab=32.25 E-value=89 Score=22.37 Aligned_cols=43 Identities=9% Similarity=0.212 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhCCCC
Q 034611 25 QQMQSRFQTMSDSIVTKIDEMGNRINELEQ----SINDLRAEMGVEG 67 (89)
Q Consensus 25 qQmQ~kFqtmS~~I~~riDeMg~RIDdLEk----sI~dLm~qaG~e~ 67 (89)
.++...|+.+-.++..-+|+++.||-.|=- +..++..-+.+++
T Consensus 54 ~~lH~~lee~~~~~~~~~D~iAERi~~lGg~p~~t~~e~~~~s~i~e 100 (162)
T PRK09448 54 IAVHEMLDGFRTALEDHLDTMAERAVQLGGVALGTTQVVASKTPLKS 100 (162)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCCCCHHHHHHhCCCCC
Confidence 445778888888888889999999876632 3334444444443
No 182
>COG3609 Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription]
Probab=32.24 E-value=89 Score=20.44 Aligned_cols=47 Identities=17% Similarity=0.362 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 13 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
+..+..||+.|.+- .+|.+.|+-|=.-|-.+-.+...-+..+..+..
T Consensus 10 p~~~~~~i~~lV~~--G~y~s~SeviR~alr~l~~~~~~~~~~~~~~~~ 56 (89)
T COG3609 10 PEQLVEFIDELVES--GRYKSRSEVIRAALRLLLEKRVDEEARLRALRE 56 (89)
T ss_pred CHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45788899998888 999999999998888887777777666666654
No 183
>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.
Probab=31.93 E-value=1.6e+02 Score=19.63 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 21 QNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
..++++++...+. +..+++.+...|.+++.++..|-.
T Consensus 5 ~~~~~~l~~~i~~----l~~~~~~l~~~~~e~~~~~~~l~~ 41 (129)
T cd00584 5 AAQLQVLQQEIEE----LQQELARLNEAIAEYEQAKETLET 41 (129)
T ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555554444 445666777777777777776655
No 184
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=31.71 E-value=1.4e+02 Score=18.94 Aligned_cols=29 Identities=21% Similarity=0.468 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034611 27 MQSRFQTMSDSIVTKIDEMGNRINELEQS 55 (89)
Q Consensus 27 mQ~kFqtmS~~I~~riDeMg~RIDdLEks 55 (89)
+..++..+-++|..+.-+...+|..|++.
T Consensus 44 ~~~~l~~~~~~~~~~~~~i~~~lk~l~~~ 72 (117)
T smart00503 44 LREKLERLIDDIKRLAKEIRAKLKELEKE 72 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444555555555555555555544
No 185
>PF14071 YlbD_coat: Putative coat protein
Probab=31.65 E-value=86 Score=22.59 Aligned_cols=15 Identities=13% Similarity=0.306 Sum_probs=8.9
Q ss_pred HHHHHHHhhCCCCCC
Q 034611 55 SINDLRAEMGVEGSP 69 (89)
Q Consensus 55 sI~dLm~qaG~e~~~ 69 (89)
+|+.|+.|..-....
T Consensus 95 ~vQ~~l~qFq~~~~~ 109 (124)
T PF14071_consen 95 SVQQVLSQFQGNGQK 109 (124)
T ss_pred HHHHHHHHhcCCCCC
Confidence 456777776554443
No 186
>KOG0796 consensus Spliceosome subunit [RNA processing and modification]
Probab=31.53 E-value=2.6e+02 Score=23.17 Aligned_cols=25 Identities=24% Similarity=0.449 Sum_probs=19.4
Q ss_pred HHHHHHhhh---HHHHHHHHHHHHHhhC
Q 034611 40 TKIDEMGNR---INELEQSINDLRAEMG 64 (89)
Q Consensus 40 ~riDeMg~R---IDdLEksI~dLm~qaG 64 (89)
.+++++... |..||..|+.|+.+++
T Consensus 112 e~~~e~~~k~~~v~~l~e~I~~~l~~~E 139 (319)
T KOG0796|consen 112 ERSEEAARKAEKVHELEEKIGKLLEKAE 139 (319)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666655 9999999999998765
No 187
>PRK00182 tatB sec-independent translocase; Provisional
Probab=31.43 E-value=1.7e+02 Score=21.87 Aligned_cols=43 Identities=9% Similarity=0.356 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhhhHHHHHHHHHHH
Q 034611 16 MTVFVQNLLQQMQSRFQTMSDSIVTKI-DEMGNRINELEQSINDL 59 (89)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~~ri-DeMg~RIDdLEksI~dL 59 (89)
|-.++.. |-.+-.+|..+....-..+ +|+|..+++|.+.|.+|
T Consensus 26 LP~~~r~-lg~~ir~~R~~~~~~k~el~~Elg~e~~elrk~l~~l 69 (160)
T PRK00182 26 LPRLIED-VRAALLAARTAINNAKQQLDGDFGEEFDEFRKPLNQI 69 (160)
T ss_pred HHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 3334433 3344456666666666665 67888899998877764
No 188
>PF15249 GLTSCR1: Glioma tumor suppressor candidate region
Probab=31.21 E-value=95 Score=20.88 Aligned_cols=26 Identities=19% Similarity=0.475 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHH
Q 034611 27 MQSRFQTMSDSIVTKIDEMGNRINEL 52 (89)
Q Consensus 27 mQ~kFqtmS~~I~~riDeMg~RIDdL 52 (89)
..+.|.+.+.+++.|...|..|...|
T Consensus 53 ~d~~~e~~~~~~~~~~~~~~~k~~~l 78 (109)
T PF15249_consen 53 WDEEFETVAAELLKRFEKMLNKYRRL 78 (109)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678888888888888888888765
No 189
>PF11172 DUF2959: Protein of unknown function (DUF2959); InterPro: IPR021342 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=31.17 E-value=1.6e+02 Score=22.95 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
+..+++.|..+...|-.-|.+|-.-|.+-.+=|..|
T Consensus 165 I~sL~~e~~~~~~di~~Li~~m~~sI~ead~FI~~l 200 (201)
T PF11172_consen 165 IASLQGEFSSIESDISQLIKEMERSIAEADAFIASL 200 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 456788999999988888888888888877766654
No 190
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=30.97 E-value=1.7e+02 Score=19.84 Aligned_cols=28 Identities=25% Similarity=0.484 Sum_probs=18.2
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 36 DSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 36 ~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
..|-..||.+.+++|.||+.-..|..+.
T Consensus 29 ~~ins~LD~Lns~LD~LE~rnD~l~~~L 56 (83)
T PF03670_consen 29 AAINSMLDQLNSCLDHLEQRNDHLHAQL 56 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 4566667777777777777666665543
No 191
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.78 E-value=1.7e+02 Score=26.67 Aligned_cols=42 Identities=12% Similarity=0.199 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 034611 31 FQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSPL 72 (89)
Q Consensus 31 FqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~~~~ 72 (89)
...|...+-.|+|+...|=|+|++-++.||.-+|.+-++..-
T Consensus 614 i~e~a~~La~R~eea~e~qe~L~~~~~~L~~~~~~~lp~l~~ 655 (741)
T KOG4460|consen 614 LREMAERLADRYEEAKEKQEDLMNRMKKLLHSFHSELPVLSD 655 (741)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcccccCCcchh
Confidence 345556677899999999999999999999999988776543
No 192
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=30.76 E-value=82 Score=24.49 Aligned_cols=42 Identities=21% Similarity=0.372 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------------HhhhHHHHHHHHHHHH
Q 034611 19 FVQNLLQQMQSRFQTMSDSIVTKIDE------------MGNRINELEQSINDLR 60 (89)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~riDe------------Mg~RIDdLEksI~dLm 60 (89)
++-.||..+.++|-..-++|-.++|+ +-.||-.|++.+.-+.
T Consensus 140 l~~~lld~i~d~~~~~le~i~~~~~~ie~~l~~~~~~~~l~~l~~l~~~l~~lr 193 (322)
T COG0598 140 LLYALLDAIVDNYFPVLEQIEDELEAIEDQLLASTTNEELERLGELRRSLVYLR 193 (322)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHH
Confidence 34445555555554433333333332 3444555555554443
No 193
>PRK10947 global DNA-binding transcriptional dual regulator H-NS; Provisional
Probab=30.71 E-value=2e+02 Score=20.57 Aligned_cols=17 Identities=12% Similarity=0.276 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034611 23 LLQQMQSRFQTMSDSIV 39 (89)
Q Consensus 23 LLqQmQ~kFqtmS~~I~ 39 (89)
.|+.|+.||..+-.+--
T Consensus 25 ~Lee~~ekl~~vv~er~ 41 (135)
T PRK10947 25 TLEEMLEKLEVVVNERR 41 (135)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 37888888876654433
No 194
>PF07586 HXXSHH: Protein of unknown function (DUF1552); InterPro: IPR011447 This is a family of proteins identified in Rhodopirellula baltica.
Probab=30.51 E-value=2.5e+02 Score=21.54 Aligned_cols=48 Identities=15% Similarity=0.167 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCC
Q 034611 18 VFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGV 65 (89)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~ 65 (89)
.+++-++++.+.--..++..=-.|||+==+-|.+||+.|.........
T Consensus 162 SvLD~v~~d~~~L~~~Lg~~Dr~kLd~yl~sireiE~rl~~~~~~~~~ 209 (302)
T PF07586_consen 162 SVLDLVREDAKSLRRRLGAEDRQKLDQYLDSIREIEKRLQQAEAWADC 209 (302)
T ss_pred cHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHhhhhcccc
Confidence 345555666655555666666789999999999999999666655443
No 195
>PF10280 Med11: Mediator complex protein ; InterPro: IPR019404 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents subunit Med11 of the Mediator complex []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex; PDB: 3R84_S 3RJ1_O.
Probab=30.45 E-value=45 Score=22.80 Aligned_cols=18 Identities=28% Similarity=0.510 Sum_probs=14.3
Q ss_pred hHHHHHHHHHHHHHhhCC
Q 034611 48 RINELEQSINDLRAEMGV 65 (89)
Q Consensus 48 RIDdLEksI~dLm~qaG~ 65 (89)
+|++.|+.|..||..||-
T Consensus 7 ~L~~Idk~I~~lL~~A~~ 24 (117)
T PF10280_consen 7 QLNEIDKKIVSLLQHAGQ 24 (117)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 467778888888888874
No 196
>PHA03386 P10 fibrous body protein; Provisional
Probab=30.31 E-value=1.9e+02 Score=20.13 Aligned_cols=54 Identities=19% Similarity=0.329 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCC
Q 034611 19 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSPLTPSKT 77 (89)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~~~~~~~~~ 77 (89)
++|+-+.+++..|+. -+.+-..+++..+.|. +|.++.+..-+.+.|.|..|+.+
T Consensus 23 aLQ~qV~dv~~n~~~-LDa~~~qL~~l~tkV~----~Iq~iLn~d~iPd~P~p~~p~~~ 76 (94)
T PHA03386 23 ALQTQLNGLEEDSQP-LDGLPAQLTELDTKVS----DIQSILTGDEVPDPPDPPLPLLP 76 (94)
T ss_pred HHHHHHHHHHhcchh-hhhHHHHHHHHHHHHH----HHHHhcCcccCCCCCCCCCCCCc
Confidence 356667777776665 3455567788888885 57788888867666665544433
No 197
>PF08581 Tup_N: Tup N-terminal; InterPro: IPR013890 The N-terminal region of the Tup protein has been shown to interact with the Ssn6 transcriptional co-repressor []. ; PDB: 3VP9_B 3VP8_B.
Probab=30.11 E-value=1.6e+02 Score=19.30 Aligned_cols=40 Identities=20% Similarity=0.531 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHH-----------------HHHHHHHhhhHHHHHHHHHHH
Q 034611 20 VQNLLQQMQSRFQTMSDSI-----------------VTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I-----------------~~riDeMg~RIDdLEksI~dL 59 (89)
+..||.++..-|.+++..+ +.-|+.+=..|-+||..-..+
T Consensus 2 l~elLd~ir~Ef~~~~~e~~~~k~~~~e~e~ki~~Qi~Em~~ir~~v~eLE~~h~km 58 (79)
T PF08581_consen 2 LNELLDAIRQEFENLSQEANSYKHQKDEYEHKINSQIQEMQQIRQKVYELEQAHRKM 58 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888887777633 233555666777777654443
No 198
>COG4839 FtsL Protein required for the initiation of cell division [Cell division and chromosome partitioning]
Probab=30.06 E-value=1.9e+02 Score=20.94 Aligned_cols=21 Identities=33% Similarity=0.544 Sum_probs=18.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q 034611 40 TKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm 60 (89)
.+|++=.+++|+|++.|.||-
T Consensus 74 ~kIs~q~~e~~dlkqeV~dLs 94 (120)
T COG4839 74 SKISEQKTENDDLKQEVKDLS 94 (120)
T ss_pred HHHHHHHhhhhhHHHHHHHhc
Confidence 668888999999999999884
No 199
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=29.76 E-value=1.5e+02 Score=18.60 Aligned_cols=18 Identities=22% Similarity=0.564 Sum_probs=7.1
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 034611 42 IDEMGNRINELEQSINDL 59 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dL 59 (89)
|+.+..++..|++.+.++
T Consensus 78 i~~l~~~~~~l~~~l~~~ 95 (106)
T PF01920_consen 78 IKKLEKQLKYLEKKLKEL 95 (106)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444333
No 200
>KOG1656 consensus Protein involved in glucose derepression and pre-vacuolar endosome protein sorting [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.75 E-value=2.9e+02 Score=21.95 Aligned_cols=17 Identities=41% Similarity=0.466 Sum_probs=13.0
Q ss_pred HHHhhhHHHHHHHHHHH
Q 034611 43 DEMGNRINELEQSINDL 59 (89)
Q Consensus 43 DeMg~RIDdLEksI~dL 59 (89)
||.-..+|+||+.-.|.
T Consensus 160 DEL~~ELdeLeqeeld~ 176 (221)
T KOG1656|consen 160 DELMAELDELEQEELDK 176 (221)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78888899999765543
No 201
>PF11101 DUF2884: Protein of unknown function (DUF2884); InterPro: IPR021307 Some members in this bacterial family of proteins are annotated as YggN which currently has no known function.
Probab=29.56 E-value=2.5e+02 Score=21.22 Aligned_cols=47 Identities=19% Similarity=0.374 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHH-----HHHHHHhhhHHHHHHHHHHHHH
Q 034611 15 DMTVFVQNLLQQ-MQSRFQTMSDSIV-----TKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 15 dLT~~Vq~LLqQ-mQ~kFqtmS~~I~-----~riDeMg~RIDdLEksI~dLm~ 61 (89)
|+-+.++.+.++ |-.-|..|+.+++ .||..|+.|++.|-..|..=|.
T Consensus 136 e~e~~~e~lv~~s~g~i~~~l~~~m~~~~G~~~l~~~~~~m~~l~~~ie~~~~ 188 (229)
T PF11101_consen 136 EFEQAIEQLVQESMGSILQALGNEMGSSEGDQNLQAFEQRMEGLQQQIEQEME 188 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHHHHHHHH
Confidence 344444443332 3344677777774 3566666666666666655443
No 202
>TIGR00237 xseA exodeoxyribonuclease VII, large subunit. This family consist of exodeoxyribonuclease VII, large subunit XseA which catalyses exonucleolytic cleavage in either the 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. Exonuclease VII consists of one large subunit and four small subunits.
Probab=29.47 E-value=3.2e+02 Score=22.48 Aligned_cols=44 Identities=14% Similarity=0.274 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHhhhHHHHHHHHHHH
Q 034611 16 MTVFVQNLLQQMQSRFQTMSDSI-----VTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I-----~~riDeMg~RIDdLEksI~dL 59 (89)
|...+++.|++-+.+|+.+...+ ..+|.....|++.|.+.+...
T Consensus 316 L~~a~~~~L~~k~~rL~~L~~rL~aLSPl~~~~~~~~~l~~~~~~l~~~ 364 (432)
T TIGR00237 316 KQAALNKQLERTRQKKTRLTKRLTQTNPSPQILRAQTRTEQLNRRLNAL 364 (432)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555444333 233455555555555544433
No 203
>PF09277 Erythro-docking: Erythronolide synthase, docking; InterPro: IPR015357 Docking domains are found in prokaryotic erythronolide synthase. They adopt a structure consisting of a bundle of four alpha-helices, and mediate homodimerisation of the protein, stabilising the resulting complex []. ; PDB: 1PZQ_A.
Probab=29.28 E-value=31 Score=22.19 Aligned_cols=20 Identities=30% Similarity=0.529 Sum_probs=15.8
Q ss_pred HhhhHHHHHHHHHHHHHhhC
Q 034611 45 MGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 45 Mg~RIDdLEksI~dLm~qaG 64 (89)
.|.|+|.||+-+..|=.+-|
T Consensus 8 v~a~lDrLE~aL~aLpd~dG 27 (58)
T PF09277_consen 8 VGAELDRLEAALLALPDEDG 27 (58)
T ss_dssp THHHHHHHHHHHHHHTTSS-
T ss_pred hhHHHHHHHHHHhcCCcccc
Confidence 57899999999988876655
No 204
>cd00082 HisKA Histidine Kinase A (dimerization/phosphoacceptor) domain; Histidine Kinase A dimers are formed through parallel association of 2 domains creating 4-helix bundles; usually these domains contain a conserved His residue and are activated via trans-autophosphorylation by the catalytic domain of the histidine kinase. They subsequently transfer the phosphoryl group to the Asp acceptor residue of a response regulator protein. Two-component signalling systems, consisting of a histidine protein kinase that senses a signal input and a response regulator that mediates the output, are ancient and evolutionarily conserved signaling mechanisms in prokaryotes and eukaryotes.
Probab=28.95 E-value=92 Score=16.03 Aligned_cols=25 Identities=20% Similarity=0.240 Sum_probs=13.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 37 SIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 37 ~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
.+...++.|-..++.+..-+.+|..
T Consensus 38 ~~~~~~~~~~~~~~~~~~l~~~l~~ 62 (65)
T cd00082 38 EQREYLERIREEAERLLRLINDLLD 62 (65)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555556666666666553
No 205
>PF04380 BMFP: Membrane fusogenic activity; InterPro: IPR007475 BMFP consists of two structural domains, a coiled-coil C-terminal domain via which the protein self-associates as a trimer, and an N-terminal domain disordered at neutral pH but adopting an amphipathic alpha-helical structure in the presence of phospholipid vesicles, high ionic strength, acidic pH or SDS. BMFP interacts with phospholipid vesicles though the predicted amphipathic alpha-helix induced in the N-terminal half of the protein and promotes aggregation and fusion of vesicles in vitro.
Probab=28.93 E-value=1.6e+02 Score=18.87 Aligned_cols=17 Identities=24% Similarity=0.438 Sum_probs=10.4
Q ss_pred HHHHHHHHhhhHHHHHH
Q 034611 38 IVTKIDEMGNRINELEQ 54 (89)
Q Consensus 38 I~~riDeMg~RIDdLEk 54 (89)
.-.||+.+-.||..||+
T Consensus 62 ~r~kl~~LEarl~~LE~ 78 (79)
T PF04380_consen 62 TREKLEALEARLAALEA 78 (79)
T ss_pred HHHHHHHHHHHHHHHhc
Confidence 34556666666666664
No 206
>PRK12714 flgK flagellar hook-associated protein FlgK; Provisional
Probab=28.77 E-value=3.9e+02 Score=23.23 Aligned_cols=41 Identities=17% Similarity=0.457 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
++.+..+++.+-..|-..|...-.+|+.|=++|++|-.+..
T Consensus 143 f~~~~~~L~~~~~~~n~~i~~~V~~IN~l~~~IA~LN~~I~ 183 (624)
T PRK12714 143 FKQLNGQMDSLSNEVNSGLTSSVDEVNRLTQQIAKINGTIG 183 (624)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555666667777777788888888888877764
No 207
>PF02646 RmuC: RmuC family; InterPro: IPR003798 This protein contains several bacterial RmuC DNA recombination proteins. The function of the RMUC protein is unknown but it is suspected that it is either a structural protein that protects DNA against nuclease action, or is itself involved in DNA cleavage at the regions of DNA secondary structures []. Proteins in this family are predicted to contain a central endonuclease-like fold domain, surrounded by coiled coils, consistent with a direct role in DNA cleavage [, ].
Probab=28.56 E-value=2.9e+02 Score=21.61 Aligned_cols=24 Identities=8% Similarity=0.293 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSI 38 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I 38 (89)
.+..-|..+.++.+..|..+..+|
T Consensus 17 ~~~~~l~~~~~~~~~~~~~L~~~l 40 (304)
T PF02646_consen 17 KFEKRLEESFEQRSEEFGSLKEQL 40 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555555554
No 208
>PRK05683 flgK flagellar hook-associated protein FlgK; Validated
Probab=27.94 E-value=3.9e+02 Score=23.71 Aligned_cols=40 Identities=18% Similarity=0.424 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
++++..+++.+-..|-..|...-.+|+.|=++|++|-.+.
T Consensus 143 fn~~~~~L~~l~~~vn~qI~~~V~~IN~l~~qIA~LN~qI 182 (676)
T PRK05683 143 FNSLSSQLNQQNSNINSQLSAMTDQVNNLTTSIASYNKQI 182 (676)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666666677777777888888888888887665
No 209
>KOG3313 consensus Molecular chaperone Prefoldin, subunit 3 [Posttranslational modification, protein turnover, chaperones]
Probab=27.79 E-value=1.7e+02 Score=22.59 Aligned_cols=29 Identities=14% Similarity=0.479 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034611 29 SRFQTMSDSIVTKIDEMGNRINELEQSIN 57 (89)
Q Consensus 29 ~kFqtmS~~I~~riDeMg~RIDdLEksI~ 57 (89)
.|+.-|-..++.++-.|.+||-++|+++.
T Consensus 47 ~kYkfme~~l~a~~~~l~~kIPd~entLe 75 (187)
T KOG3313|consen 47 GKYKFMEASLLAQKRRLKTKIPDIENTLE 75 (187)
T ss_pred HHHHHHHHHHHHHHHHHHhhchHHHHHHH
Confidence 44567889999999999999999999875
No 210
>COG3599 DivIVA Cell division initiation protein [Cell division and chromosome partitioning]
Probab=27.78 E-value=2.1e+02 Score=21.92 Aligned_cols=37 Identities=14% Similarity=0.424 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 19 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
-|+.+|.++.+.+..+- ..+-+.-.||++|++.|...
T Consensus 27 EVdeFLD~V~~dye~~l----~e~~~l~~~i~~L~~~l~~~ 63 (212)
T COG3599 27 EVDEFLDDVIDDYEQLL----DENEDLEDEIDELKEELKEA 63 (212)
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHh
Confidence 47788888888887655 33445555666666666544
No 211
>PF15027 DUF4525: Domain of unknown function (DUF4525)
Probab=27.76 E-value=1.8e+02 Score=21.56 Aligned_cols=28 Identities=21% Similarity=0.476 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 34 MSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 34 mS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
+-..|.--+|+|=.||+.||..+.-++.
T Consensus 80 LKktiAVLLddiLqRl~kLE~kvd~lvv 107 (138)
T PF15027_consen 80 LKKTIAVLLDDILQRLVKLESKVDNLVV 107 (138)
T ss_pred HhhhhhhhhhHHHHHHHHHHHHHHHHee
Confidence 3344444589999999999999998653
No 212
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=27.72 E-value=1.5e+02 Score=18.07 Aligned_cols=35 Identities=17% Similarity=0.436 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHH----HHHHHHHHHHhhhHHHHHHHH
Q 034611 22 NLLQQMQSRFQTMS----DSIVTKIDEMGNRINELEQSI 56 (89)
Q Consensus 22 ~LLqQmQ~kFqtmS----~~I~~riDeMg~RIDdLEksI 56 (89)
++|+||.--.+.+. .++.+||-..-+.++.|.+.+
T Consensus 39 ~~l~qMe~E~~~~p~s~r~~~~~kl~~yr~~l~~lk~~l 77 (79)
T PF05008_consen 39 ELLKQMELEVRSLPPSERNQYKSKLRSYRSELKKLKKEL 77 (79)
T ss_dssp HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555554444332 233444555555555554443
No 213
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=27.62 E-value=3.3e+02 Score=25.38 Aligned_cols=53 Identities=23% Similarity=0.340 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 67 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~ 67 (89)
++-+..+.+...+..+-..+..+|-.+-.+...++++||+....=+...||+.
T Consensus 718 e~~~~~~~~~~~~d~~i~~i~~~i~~~~~~~~~~~~~le~~~~~eL~~~GvD~ 770 (1201)
T PF12128_consen 718 ELKAQWQELEAELDEQIEQIKQEIAAAKQEAKEQLKELEQQYNQELAGKGVDP 770 (1201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCH
Confidence 44455666666777777777788888888888888888888887778888874
No 214
>PRK04654 sec-independent translocase; Provisional
Probab=27.62 E-value=3e+02 Score=21.60 Aligned_cols=41 Identities=7% Similarity=0.323 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHHHHhhhHHHHHHHHH
Q 034611 17 TVFVQNLLQQMQSRFQTMSDSIVT--KIDEMGNRINELEQSIN 57 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~--riDeMg~RIDdLEksI~ 57 (89)
...|-.++.+++.-|..+-++|.. +++|+-+.+.++.+.|.
T Consensus 29 aRtlGk~irk~R~~~~~vk~El~~El~~~ELrk~l~~~~~~i~ 71 (214)
T PRK04654 29 ARFAGLWVRRARMQWDSVKQELERELEAEELKRSLQDVQASLR 71 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 334444555555556655555543 23455444444444333
No 215
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=27.51 E-value=2e+02 Score=19.35 Aligned_cols=26 Identities=12% Similarity=0.327 Sum_probs=18.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 37 SIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 37 ~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
.+-++++.|+.+|+-++....=|+.+
T Consensus 76 el~G~~~~l~~~l~~v~~~~~lLlE~ 101 (106)
T PF10805_consen 76 ELRGELKELSARLQGVSHQLDLLLEN 101 (106)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 45578888888888887766655554
No 216
>KOG1106 consensus Uncharacterized conserved protein [Function unknown]
Probab=27.45 E-value=2.3e+02 Score=21.65 Aligned_cols=33 Identities=21% Similarity=0.459 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHH--H--HHHHhhhHHHHHHHHH
Q 034611 25 QQMQSRFQTMSDSIVT--K--IDEMGNRINELEQSIN 57 (89)
Q Consensus 25 qQmQ~kFqtmS~~I~~--r--iDeMg~RIDdLEksI~ 57 (89)
+-+-.|++...+.+.+ . .-.-..|+|++|++|-
T Consensus 124 e~l~~R~~~~l~~~~s~~~~~~s~~~~rLD~~E~~l~ 160 (177)
T KOG1106|consen 124 ETLRSRVREILDSSLSATNTQTSKFVERLDEMERKLF 160 (177)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4455566666666665 2 2455678888888763
No 217
>TIGR00996 Mtu_fam_mce virulence factor Mce family protein. Members of this paralogous family are found as six tandem homologous proteins in the same orientation per cassette, in four separate cassettes in Mycobacterium tuberculosis. The six members of each cassette represent six subfamilies. One subfamily includes the protein mce (mycobacterial cell entry), a virulence protein required for invasion of non-phagocytic cells.
Probab=27.43 E-value=2.2e+02 Score=21.25 Aligned_cols=15 Identities=20% Similarity=0.206 Sum_probs=7.9
Q ss_pred CHHHHHHHHHHHHHH
Q 034611 12 STADMTVFVQNLLQQ 26 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQ 26 (89)
+..+|.+-+..++++
T Consensus 131 ~l~~ll~~~~~ll~~ 145 (291)
T TIGR00996 131 EIDDLLGSLTRLLNG 145 (291)
T ss_pred cHHHHHHHHHHHHhc
Confidence 555555555555544
No 218
>PF05842 Euplotes_phero: Euplotes octocarinatus mating pheromone protein; InterPro: IPR008612 This family consists of several mating pheromone proteins from Euplotes octocarinatus. Cells of the ten mating types of the ciliate E. octocarinatus communicate by pheromones before they enter conjugation. The pheromones induce homotypic pairing when applied to mating types that do not secrete the same pheromone(s). Heterotypic pairs (i.e., those between cells of different mating types) are formed only when both mating types in a mixture secrete a pheromone that the other does not. The genetics of mating types is based on four codominant mating type alleles, each allele determining production of a different pheromone. The pheromones not only induce pair formation but also attract cells [].; GO: 0005186 pheromone activity, 0007154 cell communication, 0005576 extracellular region
Probab=27.43 E-value=48 Score=24.39 Aligned_cols=18 Identities=44% Similarity=0.512 Sum_probs=12.6
Q ss_pred HHHHHHHH-HHHHHHHHHH
Q 034611 16 MTVFVQNL-LQQMQSRFQT 33 (89)
Q Consensus 16 LT~~Vq~L-LqQmQ~kFqt 33 (89)
||.-|.+= -.|+|.|||.
T Consensus 3 MTSKVNTKLQSqiqSKfqS 21 (134)
T PF05842_consen 3 MTSKVNTKLQSQIQSKFQS 21 (134)
T ss_pred chhhhhHHHHHHHHHHHhh
Confidence 45566654 4589999984
No 219
>PF03148 Tektin: Tektin family; InterPro: IPR000435 Tektin heteropolymers form unique protofilaments of flagellar microtubules []. The proteins are predicted to form extended rods composed of 2 alpha- helical segments (~180 residues long) capable of forming coiled coils, interrupted by non-helical linkers []. The 2 segments are similar in sequence, indicating a gene duplication event. Along each tektin rod, cysteine residues occur with a periodicity of ~8nm, coincident with the axial repeat of tubulin dimers in microtubules []. It is proposed that the assembly of tektin heteropolymers produces filaments with repeats of 8, 16, 24, 32, 40, 48 and 96nm, generating the basis for the complex spatial arrangements of axonemal components [].; GO: 0000226 microtubule cytoskeleton organization, 0005874 microtubule
Probab=27.13 E-value=3.4e+02 Score=21.98 Aligned_cols=33 Identities=18% Similarity=0.302 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034611 22 NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 54 (89)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEk 54 (89)
...+.|+.-++..-..+-.||.+|-.-.++||-
T Consensus 233 ~~~~dl~~Q~~~vn~al~~Ri~et~~ak~~Le~ 265 (384)
T PF03148_consen 233 QTANDLRAQADAVNAALRKRIHETQEAKNELEW 265 (384)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555444443333333
No 220
>PF01346 FKBP_N: Domain amino terminal to FKBP-type peptidyl-prolyl isomerase; InterPro: IPR000774 Peptidyl-prolyl cis-trans isomerase (PPIase) catalyses the cis-trans isomerisation of proline imidic peptide bonds in oligopeptides [, ]. This alpha helical domain is found at the N terminus of proteins belonging to the FKBP-type peptidyl-prolyl cis-trans isomerase(IPR001179 from INTERPRO) family. Peptidyl-prolyl cis-trans isomerase has been shown to accelerate the refolding of several proteins in vitro [, , ]; the FKPB-type enzymes probably act in the folding of extracytoplasmic proteins.; GO: 0006457 protein folding; PDB: 1FD9_A 2VCD_A 3OE2_A 2UZ5_A 3B09_A 1Q6H_B 1Q6I_B 1Q6U_A.
Probab=27.07 E-value=1.9e+02 Score=18.95 Aligned_cols=59 Identities=22% Similarity=0.204 Sum_probs=36.4
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCCCC
Q 034611 7 EDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSP 71 (89)
Q Consensus 7 ~dpkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~~~ 71 (89)
..|.-+.+++..+++.+.+.++.+.+..-... ....+..=++=+.+.-...||-.++|.
T Consensus 61 ~~~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~------~~~~~~~~~~fla~n~k~~GV~~t~SG 119 (124)
T PF01346_consen 61 KKPKLSDEEAQEALQAFQQKMQAKQQEKMAKA------AEKNKAEGEAFLAENAKKEGVKTTESG 119 (124)
T ss_dssp T--SS-HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHTSTTEEE-TTS
T ss_pred CCcCCCHHHHHHHHHHHHHHHHHHhhcchhhh------hhhhHHHHHHHHHHHcCCCCCEECCCC
Confidence 45666788888888888888888876543222 233344445557777777787777654
No 221
>COG4570 Rus Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=26.96 E-value=53 Score=23.99 Aligned_cols=17 Identities=24% Similarity=0.431 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHhhCC
Q 034611 49 INELEQSINDLRAEMGV 65 (89)
Q Consensus 49 IDdLEksI~dLm~qaG~ 65 (89)
||+|-|++-|.|+.+|+
T Consensus 84 lDNl~K~l~Daltk~g~ 100 (132)
T COG4570 84 LDNLLKALLDALTKAGV 100 (132)
T ss_pred HHHHHHHHHHHHhhcce
Confidence 89999999999999996
No 222
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=26.67 E-value=1e+02 Score=19.45 Aligned_cols=21 Identities=38% Similarity=0.567 Sum_probs=16.7
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034611 42 IDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~q 62 (89)
++|+..||-.||..|.-+-+.
T Consensus 23 v~EL~~RIa~L~aEI~R~~~~ 43 (59)
T PF06698_consen 23 VEELEERIALLEAEIARLEAA 43 (59)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 688888888888888877654
No 223
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=26.55 E-value=1e+02 Score=25.20 Aligned_cols=19 Identities=26% Similarity=0.604 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034611 17 TVFVQNLLQQMQSRFQTMS 35 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS 35 (89)
.+||++|+.|--++|.++-
T Consensus 84 ~aYVe~LFD~~Ae~Fd~~L 102 (287)
T COG4976 84 SAYVETLFDQYAERFDHIL 102 (287)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5899999999999998753
No 224
>PRK09546 zntB zinc transporter; Reviewed
Probab=26.44 E-value=1.1e+02 Score=23.47 Aligned_cols=30 Identities=7% Similarity=0.216 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034611 18 VFVQNLLQQMQSRFQTMSDSIVTKIDEMGN 47 (89)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~ 47 (89)
.++-.+|..+-++|-...+.|-.++|++-.
T Consensus 142 ~ll~~lld~ivd~~~~~l~~i~~~ld~lE~ 171 (324)
T PRK09546 142 GWLVDVCDALTDHASEFIEELHDKIIDLED 171 (324)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777776665555555555543
No 225
>smart00190 IL4_13 Interleukins 4 and 13. Interleukins-4 and -13 are cytokines involved in inflammatory and immune responses. IL-4 stimulates B and T cells.
Probab=26.18 E-value=1e+02 Score=22.68 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 034611 15 DMTVFVQNLLQQMQSRFQ 32 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFq 32 (89)
+|..|++.|+.-||.+|-
T Consensus 117 tl~dFL~~Lk~~m~~ky~ 134 (138)
T smart00190 117 TLADFLERLKSIMREKYS 134 (138)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 899999999999999995
No 226
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=26.14 E-value=1.9e+02 Score=18.71 Aligned_cols=23 Identities=9% Similarity=0.332 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHH
Q 034611 35 SDSIVTKIDEMGNRINELEQSIN 57 (89)
Q Consensus 35 S~~I~~riDeMg~RIDdLEksI~ 57 (89)
..++...|.++-.-|+|||++|.
T Consensus 41 ~~eL~~~l~~ie~~L~DL~~aV~ 63 (97)
T PF09177_consen 41 KRELRNALQSIEWDLEDLEEAVR 63 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444445555555555555554
No 227
>PF00435 Spectrin: Spectrin repeat; InterPro: IPR002017 Spectrin repeats [] are found in several proteins involved in cytoskeletal structure. These include spectrin alpha and beta subunits [, ], alpha-actinin [] and dystrophin. The spectrin repeat forms a three-helix bundle. The second helix is interrupted by proline in some sequences. The repeats are defined by a characteristic tryptophan (W) residue at position 17 in helix A and a leucine (L) at 2 residues from the carboxyl end of helix C.; GO: 0005515 protein binding; PDB: 1HCI_A 1QUU_A 3FB2_B 1S35_A 1U5P_A 1U4Q_A 1CUN_B 1YDI_B 3EDV_A 1AJ3_A ....
Probab=26.09 E-value=1.5e+02 Score=17.36 Aligned_cols=25 Identities=28% Similarity=0.462 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 35 SDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 35 S~~I~~riDeMg~RIDdLEksI~dL 59 (89)
+..|-.+++.+..|-+.|...+.+-
T Consensus 75 ~~~i~~~~~~l~~~w~~l~~~~~~r 99 (105)
T PF00435_consen 75 SDEIQEKLEELNQRWEALCELVEER 99 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455566666666666666655543
No 228
>PF04163 Tht1: Tht1-like nuclear fusion protein ; InterPro: IPR007292 Nuclear fusion protein KAR5 is an integral membrane protein that is thought to be required for the fusion of nuclear envelopes during karyogamy.
Probab=26.06 E-value=3e+02 Score=24.06 Aligned_cols=34 Identities=24% Similarity=0.397 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHh
Q 034611 13 TADMTVFVQNLLQQMQ-------SRFQTMSDSIVTKIDEMG 46 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ-------~kFqtmS~~I~~riDeMg 46 (89)
..+|+.|++.+|+.+- +.|......|+..+..++
T Consensus 384 ~p~l~~~~~~ll~~~~~~~s~l~~~f~~w~~~i~~tf~~i~ 424 (544)
T PF04163_consen 384 LPSLTNFKNQLLQEWTMMTSNLNSDFALWNREIFSTFESIS 424 (544)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhHHHhhHHHHHHHHHHH
Confidence 4578888888887764 566666666666666666
No 229
>PRK07737 fliD flagellar capping protein; Validated
Probab=25.95 E-value=3.7e+02 Score=22.67 Aligned_cols=21 Identities=5% Similarity=0.414 Sum_probs=12.6
Q ss_pred HHHHHHHhhhHHHHHHHHHHH
Q 034611 39 VTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 39 ~~riDeMg~RIDdLEksI~dL 59 (89)
-.+|+.+-.||+.||..|..+
T Consensus 447 ~~~i~~l~~~i~~~~~rl~~~ 467 (501)
T PRK07737 447 GKDLNQIETQIDRFQDRLKQI 467 (501)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666666666554
No 230
>PF04912 Dynamitin: Dynamitin ; InterPro: IPR006996 Dynamitin is a subunit of the microtubule-dependent motor complex, it is also implicated in cell adhesion by binding to macrophage-enriched myristoylated alanine-rice C kinase substrate (MacMARCKS) []. It is also thought to modulate cytoplasmic dynein binding to an organelle, and plays a role in prometaphase chromosome alignment and spindle organisation during mitosis. Dynamitin is also involved in anchoring microtubules to centrosomes and may play a role in synapse formation during brain development []. ; GO: 0007017 microtubule-based process, 0005869 dynactin complex
Probab=25.86 E-value=1.3e+02 Score=24.09 Aligned_cols=8 Identities=25% Similarity=0.808 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 034611 24 LQQMQSRF 31 (89)
Q Consensus 24 LqQmQ~kF 31 (89)
|..|+.+|
T Consensus 359 L~~ve~~~ 366 (388)
T PF04912_consen 359 LNKVEEKF 366 (388)
T ss_pred HHHHHHHH
Confidence 33333333
No 231
>KOG4302 consensus Microtubule-associated protein essential for anaphase spindle elongation [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=25.85 E-value=2.2e+02 Score=25.64 Aligned_cols=43 Identities=16% Similarity=0.404 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCC
Q 034611 22 NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGS 68 (89)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~ 68 (89)
.=|++++.+.+++-++...|+.. |+++...|..|+...|++-.
T Consensus 160 ~kLeelr~~L~~L~~ek~~Rlek----v~~~~~~I~~l~~~Lg~~~~ 202 (660)
T KOG4302|consen 160 EKLEELREHLNELQKEKSDRLEK----VLELKEEIKSLCSVLGLDFS 202 (660)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhCCCcc
Confidence 55788888888888888888865 67888999999999998755
No 232
>smart00709 Zpr1 Duplicated domain in the epidermal growth factor- and elongation factor-1alpha-binding protein Zpr1. Also present in archaeal proteins.
Probab=25.84 E-value=1.5e+02 Score=21.54 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHH
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTK-IDEMGNRINELEQSINDLR 60 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~r-iDeMg~RIDdLEksI~dLm 60 (89)
|+.||+++.+..........+- =++--.|++++=+.|..++
T Consensus 98 VEGlL~~i~~~L~~~~~~~~~~~~~e~~~k~~~~~~~L~~~~ 139 (160)
T smart00709 98 VEGLLSRVREVLSQAIQETRDDSDPETKEKIDEFLEKLKELI 139 (160)
T ss_pred hHHHHHHHHHHHHhhhhhhcccCCHHHHHHHHHHHHHHHHHH
Confidence 5777877777776653221110 1223345555555555555
No 233
>cd01040 globin Globins are heme proteins, which bind and transport oxygen. This family summarizes a diverse set of homologous protein domains, including: (1) tetrameric vertebrate hemoglobins, which are the major protein component of erythrocytes and transport oxygen in the bloodstream, (2) microorganismal flavohemoglobins, which are linked to C-terminal FAD-dependend reductase domains, (3) homodimeric bacterial hemoglobins, such as from Vitreoscilla, (4) plant leghemoglobins (symbiotic hemoglobins, involved in nitrogen metabolism in plant rhizomes), (5) plant non-symbiotic hexacoordinate globins and hexacoordinate globins from bacteria and animals, such as neuroglobin, (6) invertebrate hemoglobins, which may occur in tandem-repeat arrangements, and (7) monomeric myoglobins found in animal muscle tissue.
Probab=25.80 E-value=1.3e+02 Score=18.99 Aligned_cols=36 Identities=22% Similarity=0.516 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034611 30 RFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66 (89)
Q Consensus 30 kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e 66 (89)
+|..-+..|+..|+.+-..+|+.++ +..++.+.|..
T Consensus 56 ~~~~~~~~~~~~l~~~v~~l~~~~~-l~~~l~~lg~~ 91 (140)
T cd01040 56 KFKAHGKRVLNALDEAIKNLDDLEA-LKALLAKLGRK 91 (140)
T ss_pred HHHHHHHHHHHHHHHHHHhccChHH-HHHHHHHHHHH
Confidence 5555667777788888888887766 66666666643
No 234
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=25.53 E-value=3.2e+02 Score=21.19 Aligned_cols=25 Identities=16% Similarity=0.372 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 034611 22 NLLQQMQSRFQTMSDSIVTKIDEMG 46 (89)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~~riDeMg 46 (89)
.|+-++..|...|-.++..+.|.|+
T Consensus 79 ~lvinlE~kvD~lee~fdd~~d~l~ 103 (189)
T TIGR02132 79 SLVINLEEKVDLIEEFFDDKFDELE 103 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444
No 235
>PF01420 Methylase_S: Type I restriction modification DNA specificity domain; InterPro: IPR000055 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type I restriction endonucleases are components of prokaryotic DNA restriction-modification mechanisms that protects the organism against invading foreign DNA. Type I enzymes have three different subunits subunits - M (modification), S (specificity) and R (restriction) - that form multifunctional enzymes with restriction (3.1.21.3 from EC), methylase (2.1.1.72 from EC) and ATPase activities [, ]. The S subunit is required for both restriction and modification and is responsible for recognition of the DNA sequence specific for the system. The M subunit is necessary for modification, and the R subunit is required for restriction. These enzymes use S-Adenosyl-L-methionine (AdoMet) as the methyl group donor in the methylation reaction, and have a requirement for ATP. They recognise asymmetric DNA sequences split into two domains of specific sequence, one 3-4 bp long and another 4-5 bp long, separated by a nonspecific spacer 6-8 bp in length. Cleavage occurs a considerable distance from the recognition sites, rarely less than 400 bp away and up to 7000 bp away. Adenosyl residues are methylated, one on each strand of the recognition sequence. These enzymes are widespread in eubacteria and archaea. In enteric bacteria they have been subdivide into four families: types IA, IB, IC and ID. This entry represents the S subunit of type I restriction endonucleases (3.1.21.3 from EC). The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence: when the target site is unmodified, the DNA is cut; when the target site is hemi-methylated, the complex acts as a maintenance methyltransferase to modify the DNA, methylating both strands []. Most of the proteins in this family have two copies of the domain.; GO: 0003677 DNA binding, 0006304 DNA modification; PDB: 1YF2_B 2Y7H_A 2Y7C_A 3OKG_A 1YDX_A.
Probab=25.46 E-value=1.8e+02 Score=18.58 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=16.6
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 36 DSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 36 ~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
..|...|+.+-. .++|++.+.+.+.
T Consensus 142 ~~i~~~l~~~~~-~~~l~~~~~~~l~ 166 (167)
T PF01420_consen 142 QKIVEILDQLDK-KIALEKKIIAELE 166 (167)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhC
Confidence 456666777777 6677777666554
No 236
>cd07626 BAR_SNX9_like The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 9 and Similar Proteins. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. This subfamily consists of SNX9, SNX18, SNX33, and similar proteins. SNX9 is localized to plasma membrane endocytic sites and acts primarily in clathrin-mediated endocytosis, while SNX18 is localized to peripheral endosomal structures, and acts in a trafficking pathway that is clathrin-independent but relies on AP-1 and PACS1. BAR domains for
Probab=25.27 E-value=3e+02 Score=20.74 Aligned_cols=38 Identities=13% Similarity=0.385 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDE-MGNRINELEQSINDLRA 61 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDe-Mg~RIDdLEksI~dLm~ 61 (89)
+..++.||..||..|..-|.- ...|+.|+-..|...+.
T Consensus 141 ~~ev~~r~d~IS~~~~aE~~~F~~eRv~Dfk~~m~~yLe 179 (199)
T cd07626 141 LEEVKRRTDVISYALLAEINHFHRERVRDFKSMMRNYLQ 179 (199)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445889999999998877643 36677777666666554
No 237
>PLN02320 seryl-tRNA synthetase
Probab=25.27 E-value=4.5e+02 Score=22.78 Aligned_cols=56 Identities=13% Similarity=0.255 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH------------HHHHHhhhHHHHHHHHHHHHHh-----hCCCCCCCCCCCCC
Q 034611 21 QNLLQQMQSRFQTMSDSIVT------------KIDEMGNRINELEQSINDLRAE-----MGVEGSPSPLTPSK 76 (89)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I~~------------riDeMg~RIDdLEksI~dLm~q-----aG~e~~~~~~~~~~ 76 (89)
+.-+++++.+...+|.+|-. ++.++..+|..||+.+..+-.+ ..+.+.+.+++|.-
T Consensus 106 ~~~~~~lr~ern~~sk~i~~~~~~~~~~~l~~~~k~lk~~i~~le~~~~~~~~~l~~~~l~iPN~~h~~VP~G 178 (502)
T PLN02320 106 QKEVERLRAERNAVANKMKGKLEPSERQALVEEGKNLKEGLVTLEEDLVKLTDELQLEAQSIPNMTHPDVPVG 178 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCC
Confidence 33467777777787777643 4566677777777776655332 34788888887654
No 238
>PF03273 Baculo_gp64: Baculovirus gp64 envelope glycoprotein family; InterPro: IPR004955 Gp64 is the major envelope fusion glycoprotein in some, though not all, baculoviruses [, ]. It is found on the surface of both infected cells and budded virions as a homotrimer, and by determining the viral receptor preferences it defines the host range and infection efficiency. Baculovirus enters its host cells by endocytosis followed by a low-pH-induced fusion of the viral envelope with the endosomal membrane, allowing viral entrance into the cell cytoplasm. This membrane fusion, and also the efficient budding of virions from the infected cell, is dependent on Gp64. Gp75 is a homologous envelope glycoprotein from Thogotoviruses that, like Gp64, forms homotrimers and is involved in both binding and entering the host cell [].; GO: 0019048 virus-host interaction, 0019031 viral envelope; PDB: 3DUZ_A.
Probab=25.19 E-value=4.4e+02 Score=23.28 Aligned_cols=53 Identities=17% Similarity=0.270 Sum_probs=32.3
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034611 4 HDSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 58 (89)
Q Consensus 4 ~~s~dpkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~d 58 (89)
|+...+. |-.||-+++..++=+.+.-+-+ ..++-.|+.+|.++++.|=+||+-
T Consensus 276 ~~~g~~A-S~~Dl~~i~~~lmyE~~~Lr~n-l~~L~~~~~~l~~~l~~vI~SvaK 328 (498)
T PF03273_consen 276 HDLGATA-SKEDLMNIQESLMYENEGLRYN-LEQLHAHFNKLSNMLNTVIQSVAK 328 (498)
T ss_dssp --TTS----HHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccccccc-CHHHHHHHHHHHHHhchhhHhh-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555 8889999998875444433333 245667777888888888777653
No 239
>PF12792 CSS-motif: CSS motif domain associated with EAL ; InterPro: IPR024744 This domain, with its characteristic highly conserved CSS sequence motif, is found N-terminal to the EAL domain (PF00563 from PFAM), found in many putative cyclic diguanylate phosphodiesterases.
Probab=25.18 E-value=2.1e+02 Score=19.30 Aligned_cols=29 Identities=17% Similarity=0.369 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034611 13 TADMTVFVQNLLQQMQSRFQTMSDSIVTKI 42 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~ri 42 (89)
.+++..+.+.+++++..-|..+ .+++.++
T Consensus 4 ~~~~~~~a~~~~~~~e~~~~~~-~~~~~~~ 32 (208)
T PF12792_consen 4 QRDLDTYAQRALQRIESVLDQA-RQALDAL 32 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 3466666666666666666554 3444443
No 240
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=24.95 E-value=42 Score=17.96 Aligned_cols=27 Identities=22% Similarity=0.495 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 34 MSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 34 mS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
|++....+|+++..+.. .|.++++.++
T Consensus 6 l~~~~~~~l~~~a~~~g---~s~s~~ir~a 32 (39)
T PF01402_consen 6 LPDELYERLDELAKELG---RSRSELIREA 32 (39)
T ss_dssp EEHHHHHHHHHHHHHHT---SSHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHHC---cCHHHHHHHH
Confidence 45566677777776543 5555555543
No 241
>PF11328 DUF3130: Protein of unknown function (DUF3130; InterPro: IPR021477 This bacterial family of proteins has no known function.
Probab=24.88 E-value=2.4e+02 Score=19.49 Aligned_cols=39 Identities=15% Similarity=0.370 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINE 51 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDd 51 (89)
|...+..++-.|.+-++ .||.+-..=..||-.||.-.-.
T Consensus 42 sin~~r~Al~dLv~~Ve-~fq~v~~~DA~RlkkmG~a~~k 80 (90)
T PF11328_consen 42 SINQLRTALIDLVDVVE-NFQQVVKKDASRLKKMGKAFTK 80 (90)
T ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 55677777777776664 4999999999999999976543
No 242
>KOG3684 consensus Ca2+-activated K+ channel proteins (intermediate/small conductance classes) [Inorganic ion transport and metabolism]
Probab=24.85 E-value=2.6e+02 Score=24.55 Aligned_cols=34 Identities=24% Similarity=0.443 Sum_probs=21.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCCCC
Q 034611 39 VTKIDEMGNRINELEQSINDLRAEMGVEGSPSPLTP 74 (89)
Q Consensus 39 ~~riDeMg~RIDdLEksI~dLm~qaG~e~~~~~~~~ 74 (89)
-.|=|++..||+.||..+.+|-.. ++.-|...++
T Consensus 440 ~~~q~~le~qI~~Le~kl~~l~~~--l~s~~~~~~~ 473 (489)
T KOG3684|consen 440 HSRQEELEKQIDTLESKLEALTAS--LSSLPGLLAQ 473 (489)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhCchhhcC
Confidence 356677888888888888777654 3444444333
No 243
>PRK15364 pathogenicity island 2 effector protein SseB; Provisional
Probab=24.60 E-value=3.4e+02 Score=21.17 Aligned_cols=39 Identities=13% Similarity=0.318 Sum_probs=24.6
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHH--HHHHHHhhhHHHHHHHH
Q 034611 17 TVFVQNLLQQM-QSRFQTMSDSIV--TKIDEMGNRINELEQSI 56 (89)
Q Consensus 17 T~~Vq~LLqQm-Q~kFqtmS~~I~--~riDeMg~RIDdLEksI 56 (89)
-.|+ +||+.| ..||..|+..-- .---+|++|+|+.=+.+
T Consensus 47 ~~~~-~ll~~La~akf~~Mq~~s~~ar~aQ~mAN~VDevIA~v 88 (196)
T PRK15364 47 LILL-MVIQAIANNKFIEVQKNAERARNTQEKSNEMDEVIAKA 88 (196)
T ss_pred HHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444 566666 678888876432 22478999998764443
No 244
>PF05121 GvpK: Gas vesicle protein K ; InterPro: IPR007805 Gas vesicles are intracellular, protein-coated, and hollow organelles found in cyanobacteria and halophilic archaea. They are permeable to ambient gases by diffusion and provide buoyancy, enabling cells to move upwards in liquid to access oxygen and/or light. Proteins containing this domain are involved in the formation of gas vesicles [].; GO: 0031412 gas vesicle organization
Probab=24.59 E-value=2.4e+02 Score=19.32 Aligned_cols=58 Identities=19% Similarity=0.475 Sum_probs=41.3
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHhhhHHHHHHHHHHHHHhhCCCCC
Q 034611 8 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTK----------IDEMGNRINELEQSINDLRAEMGVEGS 68 (89)
Q Consensus 8 dpkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~r----------iDeMg~RIDdLEksI~dLm~qaG~e~~ 68 (89)
||...-+.|...|=++++=+. |-|-.|.+.| |+.+|.-+-.||..|.+|...-|++..
T Consensus 6 d~~~v~~gL~~LVLtvVELLR---qlmErQAiRRme~G~Lse~qiErlG~tLm~Le~~~~~l~~~~gl~~~ 73 (88)
T PF05121_consen 6 DPDNVERGLARLVLTVVELLR---QLMERQAIRRMEAGSLSEEQIERLGETLMKLEEAMEELCERFGLTPE 73 (88)
T ss_pred ChHHHhccHHHHHHHHHHHHH---HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 444334567776666655443 3455566766 678999999999999999999998753
No 245
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=24.51 E-value=2.8e+02 Score=20.09 Aligned_cols=51 Identities=12% Similarity=0.244 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 13 TADMTVFVQNLLQQMQS--RFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~--kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
|.++...|+.++....- ....-...+..+++....+|..||+.-..+...|
T Consensus 35 P~~v~~~v~~~~~~~~~~~~~~~~~~~l~~~l~~~~~el~~le~~k~~id~~A 87 (180)
T PF04678_consen 35 PKQVKEAVHRLLPLLNVEEYQNSRERQLRKRLEELRQELAPLEKIKQEIDEKA 87 (180)
T ss_pred HHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44567777776655421 1112223455677888888888887766666554
No 246
>KOG2196 consensus Nuclear porin [Nuclear structure]
Probab=24.32 E-value=2.5e+02 Score=22.72 Aligned_cols=26 Identities=15% Similarity=0.468 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034611 33 TMSDSIVTKIDEMGNRINELEQSIND 58 (89)
Q Consensus 33 tmS~~I~~riDeMg~RIDdLEksI~d 58 (89)
.|...|-++|+-|+.-++++=++|++
T Consensus 178 ~~a~nidsqLk~l~~dL~~ii~~lN~ 203 (254)
T KOG2196|consen 178 KMAENIDSQLKRLSEDLKQIIKSLNT 203 (254)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 35566666666666666665555554
No 247
>PF01297 TroA: Periplasmic solute binding protein family; InterPro: IPR006127 This is a family of ABC transporter metal-binding lipoproteins. An example is the periplasmic zinc-binding protein TroA P96116 from SWISSPROT that interacts with an ATP-binding cassette transport system in Treponema pallidum and plays a role in the transport of zinc across the cytoplasmic membrane. Related proteins are found in both Gram-positive and Gram-negative bacteria. ; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2PS9_A 2PS0_A 2OSV_A 2OGW_A 2PS3_A 2PRS_B 3MFQ_C 3GI1_B 2OV3_A 1PQ4_A ....
Probab=24.17 E-value=2.9e+02 Score=20.16 Aligned_cols=52 Identities=10% Similarity=0.171 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
++.-+..+++.+-+.|...+-.=.+.+-.+....-.||++|.+.+.+.+...
T Consensus 97 dp~~~~~~~~~Ia~~L~~~~P~~~~~y~~N~~~~~~~L~~l~~~~~~~~~~~ 148 (256)
T PF01297_consen 97 DPENAKKMAEAIADALSELDPANKDYYEKNAEKYLKELDELDAEIKEKLAKL 148 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHHTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 4455666667766666666656666777888888889999998888877653
No 248
>PHA01750 hypothetical protein
Probab=24.13 E-value=2.3e+02 Score=18.98 Aligned_cols=24 Identities=21% Similarity=0.508 Sum_probs=17.7
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 39 VTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 39 ~~riDeMg~RIDdLEksI~dLm~q 62 (89)
...|.+.--|+|+||+.|.++...
T Consensus 48 ~~ei~~~kikqDnl~~qv~eik~k 71 (75)
T PHA01750 48 KTEIEELKIKQDELSRQVEEIKRK 71 (75)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHh
Confidence 344667778888888888887653
No 249
>PLN02677 mevalonate kinase
Probab=24.00 E-value=4.1e+02 Score=21.83 Aligned_cols=21 Identities=10% Similarity=0.006 Sum_probs=14.5
Q ss_pred CCCCcCCHHHHHHHHHHHHHHH
Q 034611 6 SEDPKQSTADMTVFVQNLLQQM 27 (89)
Q Consensus 6 s~dpkqs~~dLT~~Vq~LLqQm 27 (89)
+.-|. ++.++-+-|..+.++-
T Consensus 237 Tgv~~-sT~~lV~~V~~~~~~~ 257 (387)
T PLN02677 237 TRVGR-NTKALVAGVSERALRH 257 (387)
T ss_pred CCCCC-cHHHHHHHHHHHHHhC
Confidence 44455 8888888887776543
No 250
>cd07666 BAR_SNX7 The Bin/Amphiphysin/Rvs (BAR) domain of Sorting Nexin 7. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. The specific function of SNX7 is still unknown. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in protein-protein interactions.
Probab=23.91 E-value=1.6e+02 Score=23.04 Aligned_cols=38 Identities=26% Similarity=0.435 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHH------HHHHHHhhhHHHHHHHHHHH
Q 034611 22 NLLQQMQSRFQTMSDSIV------TKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~------~riDeMg~RIDdLEksI~dL 59 (89)
++|.+|-+.|-++...+- .+-.+|..+||.|+..|+-+
T Consensus 30 g~~~~~~d~~~~~~s~~~~v~~~~~eF~Emkey~d~L~~~L~~i 73 (243)
T cd07666 30 GLLSRMGQTVKAVASSVRGVKNRPEEFTEMNEYVEAFSQKINVL 73 (243)
T ss_pred hhhhhhHHHHHHHHHhccccCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 467777777777776642 24567777777777766544
No 251
>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []. This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum
Probab=23.88 E-value=1.5e+02 Score=22.03 Aligned_cols=29 Identities=21% Similarity=0.440 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 31 FQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 31 FqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
+..-...+-.+|+..-.||+.||+.+...
T Consensus 191 i~~~~~~l~~~~~~~~~~i~~~~~rl~~~ 219 (239)
T PF07195_consen 191 ITSRIDSLNSQIKSLDKQIEDLEERLESK 219 (239)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555555443
No 252
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=23.73 E-value=3.5e+02 Score=21.02 Aligned_cols=33 Identities=12% Similarity=0.105 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034611 35 SDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 67 (89)
Q Consensus 35 S~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~ 67 (89)
...+-.++++...++.+.|..+.+..++.|+-.
T Consensus 172 ~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~~~d 204 (362)
T TIGR01010 172 IAFAENEVKEAEQRLNATKAELLKYQIKNKVFD 204 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcC
Confidence 345667889999999999999999999888754
No 253
>PHA03332 membrane glycoprotein; Provisional
Probab=23.54 E-value=1.9e+02 Score=28.14 Aligned_cols=39 Identities=13% Similarity=0.290 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034611 17 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS 55 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEks 55 (89)
++-+|+=+.....|-..+.+++-.|++.|.++|+-|-..
T Consensus 925 satl~~nI~avNgRIs~Led~VN~r~~~v~~~intLA~q 963 (1328)
T PHA03332 925 SATLDNNIRAVNGRVSDLEDQVNLRFLAVATNFNTLATQ 963 (1328)
T ss_pred HHHHHhhHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344344444444444444444444444444444333
No 254
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=23.49 E-value=1e+02 Score=26.27 Aligned_cols=21 Identities=29% Similarity=0.618 Sum_probs=17.2
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034611 42 IDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~q 62 (89)
++.+..||..||+.+..+...
T Consensus 371 ~~~~~~~~~~l~~~~~~~~~~ 391 (559)
T PRK05563 371 LEVLLQRVEQLEQELKQLKAQ 391 (559)
T ss_pred HHHHHHHHHHHHHHHHhcccC
Confidence 567788999999999887653
No 255
>PF05250 UPF0193: Uncharacterised protein family (UPF0193); InterPro: IPR007914 This family of proteins is functionally uncharacterised.
Probab=23.42 E-value=1.3e+02 Score=23.27 Aligned_cols=37 Identities=22% Similarity=0.393 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHH-HHHHhhhHHHHHH
Q 034611 18 VFVQNLLQQMQSRFQTMSD--------SIVTK-IDEMGNRINELEQ 54 (89)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~--------~I~~r-iDeMg~RIDdLEk 54 (89)
...+.|++++++|-+-+.+ +--+. ..|++.||.+||.
T Consensus 151 Drf~elv~EI~ER~efL~eMe~LG~gk~yr~~I~~EIsqrlrele~ 196 (212)
T PF05250_consen 151 DRFEELVQEIEERREFLAEMEALGQGKKYRGIILTEISQRLRELEK 196 (212)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHHHHHH
Confidence 4556677777777654322 11111 3677777777764
No 256
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=23.42 E-value=2e+02 Score=18.03 Aligned_cols=22 Identities=27% Similarity=0.509 Sum_probs=14.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHhh
Q 034611 42 IDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~qa 63 (89)
+=+=|.||++|+..-.+|-..+
T Consensus 26 ll~Rge~L~~L~~kt~~L~~~a 47 (89)
T PF00957_consen 26 LLERGEKLEELEDKTEELSDNA 47 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHcCchHHHHHHHHHHHHHHh
Confidence 3344677777777777776654
No 257
>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5. This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.
Probab=23.37 E-value=2.3e+02 Score=18.73 Aligned_cols=28 Identities=32% Similarity=0.440 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 32 QTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 32 qtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
+..-+.|..++..+-.+|.++++++..|
T Consensus 12 ~~~i~~l~~~i~~l~~~i~e~~~~~~~L 39 (126)
T TIGR00293 12 QQQVESLQAQIAALRALIAELETAIETL 39 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445566777888888888887666
No 258
>PRK06945 flgK flagellar hook-associated protein FlgK; Validated
Probab=23.37 E-value=5.2e+02 Score=22.77 Aligned_cols=41 Identities=15% Similarity=0.320 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
++.+..+++.+-..+-..|...-.+|+.|=++|++|-.+..
T Consensus 144 fn~~~~~L~~~~~~~n~~I~~~V~~IN~l~~qIA~LN~~I~ 184 (651)
T PRK06945 144 FNAAGQQLDQLRQSVNTQLTSSVTQINSYTKQIAQLNDQIA 184 (651)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555666666677777777888888888888876653
No 259
>TIGR01013 2a58 Phosphate:Na+ Symporter (PNaS) Family.
Probab=23.31 E-value=2.4e+02 Score=22.97 Aligned_cols=46 Identities=11% Similarity=-0.030 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 14 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
..+-..|...++....=|..-......|+-+.-.+||+||+.+.+-
T Consensus 381 ~~~~~~v~~~f~~a~~~l~~~~~~~a~~lv~~~~~i~~l~~~~~~~ 426 (456)
T TIGR01013 381 WFLIVYLVLNFLLAPSLLFGLDLNLARRLVGVKIPFRILELFSSLL 426 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhccHHHHHHHHHHHH
Confidence 3455556666666666666666667788888888999998877654
No 260
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=23.24 E-value=3.3e+02 Score=20.55 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHh
Q 034611 14 ADMTVFVQNLLQQMQSRFQTMSDSIVTK-----IDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~r-----iDeMg~RIDdLEksI~dLm~q 62 (89)
.++-...+.++.++....+.++..|..+ ..+....++.|+.+|..+..+
T Consensus 205 ~~~l~~~~~~l~~~a~~l~~ia~ai~~~~~~~~~~~l~~~l~~l~~~l~~~~~~ 258 (284)
T PF12805_consen 205 SDVLFRFQRLLEQLAQALRQIAQAILRGRPYHHRNRLKRALEALEESLEFLRQQ 258 (284)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCchHHHHHHHHHHHHHHHHHHh
Confidence 3556678888999999999998888832 467788899999999998887
No 261
>PRK06285 chorismate mutase; Provisional
Probab=23.14 E-value=1.3e+02 Score=19.70 Aligned_cols=24 Identities=38% Similarity=0.656 Sum_probs=14.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 39 VTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 39 ~~riDeMg~RIDdLEksI~dLm~q 62 (89)
-..|+++=..||++...|-+|+.+
T Consensus 6 ~~~L~elR~~ID~ID~~iv~Ll~~ 29 (96)
T PRK06285 6 EKRLNEIRKRIDEIDEQIIDLIAE 29 (96)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666666666666665543
No 262
>COG2047 Uncharacterized protein (ATP-grasp superfamily) [General function prediction only]
Probab=23.07 E-value=2e+02 Score=23.24 Aligned_cols=37 Identities=27% Similarity=0.507 Sum_probs=25.8
Q ss_pred CCCcCCHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH
Q 034611 7 EDPKQSTADMTVFVQNLL------QQMQSRFQTMSDSIVTKIDEM 45 (89)
Q Consensus 7 ~dpkqs~~dLT~~Vq~LL------qQmQ~kFqtmS~~I~~riDeM 45 (89)
-||| +...+-.++..+| ..+..|=..|- +|++||.+|
T Consensus 196 vDpk-aAkaVL~vl~k~lgiEid~~~Le~RAke~E-~ii~k~~em 238 (258)
T COG2047 196 VDPK-AAKAVLEVLCKMLGIEIDMEALEERAKEME-EIIEKLKEM 238 (258)
T ss_pred cChH-HHHHHHHHHHHHhCceecHHHHHHHHHHHH-HHHHHHHHH
Confidence 3788 6666666666653 56677777765 788888887
No 263
>TIGR01803 CM-like chorismate mutase related enzymes. This subfamily includes two enzymes which are variants on the mechanism of chorismate mutase and are likely to have evolved from an ancestral chorismate mutase enzyme. 4-amino-4-deoxy-chorismate mutase produces amino-deoxy-prephenate which is subsequently converted to para-dimethylamino-phenylalanine, a component of the natural product pristinamycin. Isochorismate-pyruvate lyase presumably catalyzes the same type of 2+2+2 cyclo-rearrangement as chorismate mutase, but acting on isochorismate, this results in two broken bonds instead of one broken and one made. The product of this reaction is salicylate (2-hydroxy-benzoate) which is also incorporated into various natural products.
Probab=23.05 E-value=94 Score=19.66 Aligned_cols=20 Identities=5% Similarity=0.248 Sum_probs=14.0
Q ss_pred HHHhhhHHHHHHHHHHHHHh
Q 034611 43 DEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 43 DeMg~RIDdLEksI~dLm~q 62 (89)
+++=.+||.|-..|-+|+.+
T Consensus 2 ~~lR~~ID~ID~~lv~Ll~~ 21 (82)
T TIGR01803 2 ADIREAIDRIDLALVQALGR 21 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777664
No 264
>KOG3614 consensus Ca2+/Mg2+-permeable cation channels (LTRPC family) [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=23.04 E-value=2.3e+02 Score=27.86 Aligned_cols=46 Identities=22% Similarity=0.362 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 17 TVFVQNLLQQMQSRFQTM-----------SDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtm-----------S~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
..+|++++.+++.++.+= .+.|..|+-||..|+--|+.+|+++=.+
T Consensus 1121 e~~vE~~~r~~~~~~~~s~~Erir~t~~rvd~~~~~l~e~~~r~~~lk~~v~~~~~~ 1177 (1381)
T KOG3614|consen 1121 EVCVENFLRKREMEQNSSTEERIRRTANRVDLILNRLIELEQREKTLKDSVQNSETR 1177 (1381)
T ss_pred HHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 568999999998888643 4556666667777776677666655433
No 265
>PRK08147 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.85 E-value=4.6e+02 Score=22.02 Aligned_cols=41 Identities=15% Similarity=0.279 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
++++...++.+-..|-..|+..-.+|+.|=++|++|-.+..
T Consensus 144 ~n~~~~~L~~~~~~~~~~i~~~V~~iN~l~~~Ia~LN~~I~ 184 (547)
T PRK08147 144 FKTTDQYLRDQDKGVNTAIGSSVDQINNYAKQIASLNDQIT 184 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555566666667777788888888888888877753
No 266
>PRK07191 flgK flagellar hook-associated protein FlgK; Validated
Probab=22.75 E-value=4.4e+02 Score=21.74 Aligned_cols=41 Identities=22% Similarity=0.254 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
|+++...++.+-..|-..|...-.+|+.|=++|++|-.+.-
T Consensus 143 ~n~~~~~l~~~~~~~~~~i~~~V~~iN~ll~~Ia~LN~~I~ 183 (456)
T PRK07191 143 FNNVNNFIVQQKKSIGQQRDATVKQINSLTRSIADYNQKIL 183 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455555555566666677777777777777777776653
No 267
>PRK00420 hypothetical protein; Validated
Probab=22.69 E-value=2.1e+02 Score=20.08 Aligned_cols=36 Identities=14% Similarity=0.253 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhHHHHHHH
Q 034611 20 VQNLLQQMQSRFQTMSDS-IVTKIDEMGNRINELEQS 55 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~-I~~riDeMg~RIDdLEks 55 (89)
.+-|.+.+..-|..+... -++||.|+..-|+-||+=
T Consensus 71 ~~il~~ki~~L~~kL~~e~~~~ri~Ei~~~l~~l~ki 107 (112)
T PRK00420 71 EEVLIEKINYLAKKLKEDEDIERITEIIRYLEVLERI 107 (112)
T ss_pred HHHHHHHHHHHHHhCccccchhHHHHHHHHHHHHHHH
Confidence 344444455555554444 667777777777777764
No 268
>PHA02557 22 prohead core protein; Provisional
Probab=22.67 E-value=3.3e+02 Score=22.12 Aligned_cols=41 Identities=22% Similarity=0.465 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHH----HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 21 QNLLQQMQSRFQ----TMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 21 q~LLqQmQ~kFq----tmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
+.+|..|.+=|- ++.++-+.-+++|-.+|++.|+-+++|..
T Consensus 118 Es~l~GLK~lF~Ehnv~vpee~vdvV~em~~~L~E~e~~~~~l~~ 162 (271)
T PHA02557 118 ESFLGGLKELFVEHNVVVPEEKVDVVAEMEEELDEMEEELNELFE 162 (271)
T ss_pred HHHHHHHHHHHHHhCcCCcHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555553 33333344566666666666666666554
No 269
>PRK13169 DNA replication intiation control protein YabA; Reviewed
Probab=22.67 E-value=1.8e+02 Score=20.23 Aligned_cols=9 Identities=0% Similarity=0.301 Sum_probs=3.3
Q ss_pred HHHHHHHHH
Q 034611 31 FQTMSDSIV 39 (89)
Q Consensus 31 FqtmS~~I~ 39 (89)
+..+...|.
T Consensus 24 l~~LK~~~~ 32 (110)
T PRK13169 24 LGALKKQLA 32 (110)
T ss_pred HHHHHHHHH
Confidence 333333333
No 270
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=22.46 E-value=5e+02 Score=22.70 Aligned_cols=17 Identities=12% Similarity=0.509 Sum_probs=7.4
Q ss_pred HHHHhhhHHHHHHHHHH
Q 034611 42 IDEMGNRINELEQSIND 58 (89)
Q Consensus 42 iDeMg~RIDdLEksI~d 58 (89)
+.+...|++.||..+++
T Consensus 380 ~~~~~~~l~~le~~l~~ 396 (656)
T PRK06975 380 VHQLDSQFAQLDGKLAD 396 (656)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444444443
No 271
>PF04582 Reo_sigmaC: Reovirus sigma C capsid protein; InterPro: IPR007662 Protein sigmaC in its native state was shown to be a homotrimer. It was demonstrated that the sigmaC subunits are not covalently bound via disulphide linkages and the formation of an intrachain disulphide bond between the two cysteine residues of the sigmaC polypeptide may have a negative effect on oligomer stability. The susceptibility of the trimer to pH, temperature, ionic strength, chemical denaturants and detergents indicates that hydrophobic interactions contribute much more to oligomer stability than do ionic interactions and hydrogen bonding [].; PDB: 2VRS_C 2JJL_A 2BSF_A 2BT7_A 2BT8_A.
Probab=22.45 E-value=2.3e+02 Score=23.46 Aligned_cols=43 Identities=16% Similarity=0.322 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHHHHHHh
Q 034611 20 VQNLLQQMQSRFQTMSDSIVT---KIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~---riDeMg~RIDdLEksI~dLm~q 62 (89)
+++.|.+||...+.|+..|-. -+--||-.|-+||+.|+.|=..
T Consensus 110 h~ssIS~Lqs~v~~lsTdvsNLksdVSt~aL~ItdLe~RV~~LEs~ 155 (326)
T PF04582_consen 110 HSSSISDLQSSVSALSTDVSNLKSDVSTQALNITDLESRVKALESG 155 (326)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhHHHHHHhhhhhhhhhhhhhhhhhhhcchHhhHHHHHHHHhcC
Confidence 455678888888888877653 3567777888888888887543
No 272
>PF10152 DUF2360: Predicted coiled-coil domain-containing protein (DUF2360); InterPro: IPR019309 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53.
Probab=22.31 E-value=2.9e+02 Score=19.57 Aligned_cols=39 Identities=13% Similarity=0.385 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 17 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
+.|+..+-.....||..++ .||...-.++.=||.-++.+
T Consensus 9 v~fLN~F~~~cE~kL~~~e----~~Lq~~E~~l~iLEaKL~SI 47 (148)
T PF10152_consen 9 VQFLNRFASVCEEKLSDME----QRLQRLEATLNILEAKLSSI 47 (148)
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhcc
Confidence 4566666677788887776 67778888888899887654
No 273
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=22.25 E-value=1.7e+02 Score=27.18 Aligned_cols=42 Identities=19% Similarity=0.441 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 19 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
--+.+|.++.+-+.. ...++.|+...-.|+.+|||.|..|..
T Consensus 712 ~~~~~l~~~a~~lk~-~~~~~~kv~~l~~~~k~lekel~~lk~ 753 (879)
T COG0013 712 EQEDLLKEIASLLKV-PPELLPKVERLLEELKELEKELERLKK 753 (879)
T ss_pred HHHHHHHHHHHHhCC-ChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345678888888888 888999999999999999999999987
No 274
>cd01145 TroA_c Periplasmic binding protein TroA_c. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=22.17 E-value=3e+02 Score=19.69 Aligned_cols=51 Identities=6% Similarity=0.055 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
++.-+..+++++-+.|...+-.=.+.+..+....-.+|++|.+.+...+..
T Consensus 113 dp~~~~~~a~~I~~~L~~~dP~~~~~y~~N~~~~~~~l~~l~~~~~~~l~~ 163 (203)
T cd01145 113 DPNNAPALAKALADALIELDPSEQEEYKENLRVFLAKLNKLLREWERQFEG 163 (203)
T ss_pred CHHHHHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344455555665555555554445556677777777778887777777664
No 275
>PHA02675 ORF104 fusion protein; Provisional
Probab=22.07 E-value=2.8e+02 Score=19.22 Aligned_cols=40 Identities=28% Similarity=0.458 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 19 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
-|+.=|-.+-..|++ |+..--..+.||+-||..+.-|..-
T Consensus 34 sle~RL~~L~k~~~~----i~~cC~~~~~~L~RLE~H~ETLRk~ 73 (90)
T PHA02675 34 SVEERLVSLLDSYKT----ITDCCRETGARLDRLERHLETLREA 73 (90)
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555566755 4455567788888888888776643
No 276
>cd05511 Bromo_TFIID Bromodomain, TFIID-like subfamily. Human TAFII250 (or TAF250) is the largest subunit of TFIID, a large multi-domain complex, which initiates the assembly of the transcription machinery. TAFII250 contains two bromodomains that specifically bind to acetylated histone H4. Bromodomains are 110 amino acid long domains, that are found in many chromatin associated proteins. Bromodomains can interact specifically with acetylated lysine.
Probab=22.03 E-value=1.2e+02 Score=20.41 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHH
Q 034611 34 MSDSIVTKIDEMGNRINELEQSIN 57 (89)
Q Consensus 34 mS~~I~~riDeMg~RIDdLEksI~ 57 (89)
|-..+...|.++-..+-+||++|+
T Consensus 89 l~~~~~~~~~~~~~~~~~~~~~~~ 112 (112)
T cd05511 89 MLELAEELLAEREEKLTQLEKNIN 112 (112)
T ss_pred HHHHHHHHHHHhHHHHHHHHHhcC
Confidence 444445566777777888888874
No 277
>COG1394 NtpD Archaeal/vacuolar-type H+-ATPase subunit D [Energy production and conversion]
Probab=22.00 E-value=2.6e+02 Score=21.56 Aligned_cols=37 Identities=22% Similarity=0.444 Sum_probs=23.3
Q ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 034611 16 MTVFVQNL--LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI 56 (89)
Q Consensus 16 LT~~Vq~L--LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI 56 (89)
+..+++.| |-.++..|..|- ..|..-.+|++.||+.|
T Consensus 133 ~~elle~li~lae~e~~~~~L~----~Ei~~T~RRVNalE~~i 171 (211)
T COG1394 133 FEELLEKLIELAELETTLRLLL----EEIRKTKRRVNALEYVI 171 (211)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhh
Confidence 33444444 234556665544 55677899999999876
No 278
>PF07047 OPA3: Optic atrophy 3 protein (OPA3); InterPro: IPR010754 OPA3 deficiency causes type III 3-methylglutaconic aciduria (MGA) in humans. This disease manifests with early bilateral optic atrophy, spasticity, extrapyramidal dysfunction, ataxia, and cognitive deficits, but normal longevity []. This family consists of several optic atrophy 3 (OPA3) proteins and related proteins from other eukaryotic species, the function is unknown.
Probab=21.99 E-value=1.3e+02 Score=20.96 Aligned_cols=23 Identities=35% Similarity=0.644 Sum_probs=16.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 034611 40 TKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm~q 62 (89)
.|-++.-.++++||..|.+|..+
T Consensus 105 ~Ke~~~~~~l~~L~~~i~~L~~~ 127 (134)
T PF07047_consen 105 KKEEELQERLEELEERIEELEEQ 127 (134)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566777777777777777665
No 279
>cd07307 BAR The Bin/Amphiphysin/Rvs (BAR) domain, a dimerization module that binds membranes and detects membrane curvature. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions including organelle biogenesis, membrane trafficking or remodeling, and cell division and migration. Mutations in BAR containing proteins have been linked to diseases and their inactivation in cells leads to altered membrane dynamics. A BAR domain with an additional N-terminal amphipathic helix (an N-BAR) can drive membrane curvature. These N-BAR domains are found in amphiphysins and endophilins, among others. BAR domains are also frequently found alongside domains that determine lipid specificity, such as the Pleckstrin Homology (PH) and Phox Homology (PX) domains which are present in beta centaurins (ACAPs and ASAPs) and sorting nexins, respectively. A FES-CIP4 Homology (FCH) domain together with a coiled coil region is called the F-
Probab=21.88 E-value=2.4e+02 Score=18.32 Aligned_cols=41 Identities=15% Similarity=0.333 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHH
Q 034611 14 ADMTVFVQNLLQQMQSRFQTMSDSIV-TKIDEMGNRINELEQ 54 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~-~riDeMg~RIDdLEk 54 (89)
.++..+.+.+.++++..|-.-....+ +.+..+-..+..+++
T Consensus 64 ~~l~~~~~~~~~~~~~~v~~pL~~~~~~~~~~~~~~~k~~~~ 105 (194)
T cd07307 64 KELEEFRDQLEQKLENKVIEPLKEYLKKDLKEIKKRRKKLDK 105 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666667777776644444444 444444444444443
No 280
>PF12221 HflK_N: Bacterial membrane protein N terminal; InterPro: IPR020980 HflK is a bacterial membrane protein which is thought, together with the HflC protein, to form a membrane protease complex whose activity is modulated by the GTPase HflX []. This entry represents the N-terminal, membrane-spanning, region of of HflK responsible for anchoring the protein in the bacterial membrane. It is often found in association with PF01145 from PFAM.
Probab=21.75 E-value=85 Score=18.56 Aligned_cols=17 Identities=12% Similarity=0.343 Sum_probs=8.5
Q ss_pred CHHHHHHHHHHHHHHHH
Q 034611 12 STADMTVFVQNLLQQMQ 28 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ 28 (89)
.+-||..++..|.+.|-
T Consensus 19 gPPDLdel~r~l~~kl~ 35 (42)
T PF12221_consen 19 GPPDLDELFRKLQDKLG 35 (42)
T ss_pred CCCCHHHHHHHHHHHHh
Confidence 45566555554444433
No 281
>smart00808 FABD F-actin binding domain (FABD). FABD is the F-actin binding domain of Bcr-Abl and its cellular counterpart c-Abl. The Bcr-Abl tyrosine kinase causes different forms of leukemia in humans. Depending on its position within the cell, Bcr-Abl differentially affects cellular growth. The FABD forms a compact left-handed four-helix bundle in solution.
Probab=21.71 E-value=1.3e+02 Score=21.87 Aligned_cols=17 Identities=29% Similarity=0.515 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHhhCCCC
Q 034611 51 ELEQSINDLRAEMGVEG 67 (89)
Q Consensus 51 dLEksI~dLm~qaG~e~ 67 (89)
.||-++..|...||.-+
T Consensus 86 rlE~~~r~Lr~sa~~~~ 102 (126)
T smart00808 86 RLELQLRELRISAGSRN 102 (126)
T ss_pred HHHHHHHHHHhhccCCC
Confidence 34556666665555433
No 282
>cd00907 Bacterioferritin Bacterioferritin, ferritin-like diiron-binding domain. Bacterioferritins, also known as cytochrome b1, are members of a broad superfamily of ferritin-like diiron-carboxylate proteins. Similar to ferritin in architecture, Bfr forms an oligomer of 24 subunits that assembles to form a hollow sphere with 432 symmetry. Up to 12 heme cofactor groups (iron protoporphyrin IX or coproporphyrin III) are bound between dimer pairs. The role of the heme is unknown, although it may be involved in mediating iron-core reduction and iron release. Each subunit is composed of a four-helix bundle which carries a diiron ferroxidase center; it is here that initial oxidation of ferrous iron by molecular oxygen occurs, facilitating the detoxification of iron, protection against dioxygen and radical products, and storage of ferric-hydroxyphosphate at the core. Some bacterioferritins are composed of two subunit types, one conferring heme-binding ability (alpha) and the other (beta) best
Probab=21.61 E-value=2.1e+02 Score=18.97 Aligned_cols=25 Identities=24% Similarity=0.319 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHH
Q 034611 26 QMQSRFQTMSDSIVTKIDEMGNRIN 50 (89)
Q Consensus 26 QmQ~kFqtmS~~I~~riDeMg~RID 50 (89)
.+...|...+..-...+|.++.||-
T Consensus 38 ~~~~~f~~~a~ee~~Ha~~lae~i~ 62 (153)
T cd00907 38 KLAERFRKESIEEMKHADKLIERIL 62 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555553
No 283
>PRK00892 lpxD UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; Provisional
Probab=21.58 E-value=67 Score=25.08 Aligned_cols=20 Identities=25% Similarity=0.622 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhHHHHHHHH
Q 034611 37 SIVTKIDEMGNRINELEQSI 56 (89)
Q Consensus 37 ~I~~riDeMg~RIDdLEksI 56 (89)
..+.||.+|-+|+..|||.+
T Consensus 321 ~~~~~l~~~~~~~~~~~~~~ 340 (343)
T PRK00892 321 ARLRRLDELRKRLKALEKKV 340 (343)
T ss_pred HHHhhhHHHHHHHHHHHHHh
Confidence 46789999999999999964
No 284
>PRK08032 fliD flagellar capping protein; Reviewed
Probab=21.29 E-value=4.8e+02 Score=21.65 Aligned_cols=52 Identities=13% Similarity=0.317 Sum_probs=0.0
Q ss_pred CHHHHHHHH------HHHHHHHHHHHHH----------HHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 12 STADMTVFV------QNLLQQMQSRFQT----------MSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 12 s~~dLT~~V------q~LLqQmQ~kFqt----------mS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
++..+..|. ..+..+|.+.+.. -.+.+-.+|+.+-.||+.||..|..+-...
T Consensus 369 np~~V~~lF~~~~~~~G~~~~l~~~l~~~~~~~G~l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl 436 (462)
T PRK08032 369 DPAGVKALFVGDGKKTGITTQIATNLKSWLSTTGIIKTATDGVNKTLKKLTKQYNAVSDSIDATIARY 436 (462)
T ss_pred CHHHHHHHhCCCCCCCcHHHHHHHHHHHHHcCCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 285
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=21.18 E-value=3.1e+02 Score=20.94 Aligned_cols=43 Identities=16% Similarity=0.298 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034611 16 MTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 58 (89)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~d 58 (89)
++.-...+.+++......+...+-.+++.-..+++.|.+.+..
T Consensus 141 ~~~~~~~~~~~l~~~~~~l~~~~~~~l~~~~~~L~~l~~~l~~ 183 (319)
T PF02601_consen 141 IVPDRRELLQRLDELRQRLNRAMRNRLQRKRQRLNQLAKRLQL 183 (319)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3455566666666666666666666666666666666666544
No 286
>COG3143 CheZ Chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms]
Probab=21.10 E-value=3e+02 Score=21.79 Aligned_cols=32 Identities=16% Similarity=0.448 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 27 MQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 27 mQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
|-.-||.+..|||.|+=+. |.++|+++-.+..
T Consensus 140 mAQDfQDLTGQVIKrv~dl---VqeiE~~Lv~il~ 171 (217)
T COG3143 140 MAQDFQDLTGQVIKRVMDV---VQEIESQLVMILL 171 (217)
T ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH
Confidence 4557999999999998665 6788999988883
No 287
>PF04888 SseC: Secretion system effector C (SseC) like family ; InterPro: IPR006972 SseC is a secreted protein that forms a complex together with SecB and SecD on the surface of Salmonella typhimurium. All these proteins are secreted by the type III secretion system []. Many mucosal pathogens use type III secretion systems for the injection of effector proteins into target cells. SecB, SseC and SecD are inserted into the target cell membrane. where they form a small pore or translocon [, ]. In addition to SseC, this family includes the bacterial secreted proteins PopB, PepB, YopB and EspD which are thought to be directly involved in pore formation, and type III secretion system translocon.; GO: 0009405 pathogenesis
Probab=20.93 E-value=3.9e+02 Score=20.40 Aligned_cols=36 Identities=14% Similarity=0.349 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 26 QMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 26 QmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
.+.+.++.+.++.+..+-++..+.+++=+.+.+.++
T Consensus 258 a~~~~l~~~~~~~~~~~~~~~e~~~~~~~~~~~~i~ 293 (306)
T PF04888_consen 258 AMMEQLQSIMDQAIKQFKKLMESFQQIMKSISQIIQ 293 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444444444444444443
No 288
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=20.89 E-value=3.2e+02 Score=24.93 Aligned_cols=26 Identities=31% Similarity=0.561 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTKIDEM 45 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~riDeM 45 (89)
.|++...+|.+|-+|+.+|..-+|-.
T Consensus 60 Lq~~~~~~~~~~~~~~~~~~el~~k~ 85 (698)
T KOG0978|consen 60 LQNLADHLQEKHATLSEQISELLDKI 85 (698)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888877554433
No 289
>PF08020 DUF1706: Protein of unknown function (DUF1706) ; InterPro: IPR012550 This family contains many hypothetical proteins from bacteria and yeast.
Probab=20.81 E-value=94 Score=22.77 Aligned_cols=48 Identities=13% Similarity=0.259 Sum_probs=33.0
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 9 PKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 9 pkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
|+ +-+||...++.-.+.|..-|..|+.......-+-| ...+|+.|++.
T Consensus 4 p~-tK~eLl~ai~~~~~kL~~~~~~ipee~~~~~~~~~----~~d~~~~DvLa 51 (166)
T PF08020_consen 4 PT-TKAELLEAIEKNYEKLISEIDSIPEEQKDTPFDFG----GRDRNPRDVLA 51 (166)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHhCCHHHhcCccccc----cccCCHHHHHH
Confidence 44 77888888888888888888877766543332222 67788888764
No 290
>PF05130 FlgN: FlgN protein; InterPro: IPR007809 Flagella synthesis protein FlgN is an export chaperone involved in flagellar synthesis []. This entry represents a FlgN-like domain, consisting of a 4 long helices bundle, where the last helix is shorter than the three others.; GO: 0009296 flagellum assembly, 0019861 flagellum; PDB: 2FUP_A 3OPC_A.
Probab=20.75 E-value=2.4e+02 Score=17.91 Aligned_cols=51 Identities=24% Similarity=0.414 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034611 16 MTVFVQNLLQQMQSRFQTMS-------DSIVTKIDEMGNRINELEQSINDLRAEMGVE 66 (89)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS-------~~I~~riDeMg~RIDdLEksI~dLm~qaG~e 66 (89)
.....+.|+.-++..++.+. ..++.+......+|..||+....+....+..
T Consensus 13 ~~~~~~~L~~ll~~e~~~l~~~d~~~l~~~~~~k~~l~~~l~~le~~r~~~~~~~~~~ 70 (143)
T PF05130_consen 13 QIELLQELLELLEEEREALISGDIDELEELVEEKQELLEELRELEKQRQQLLAKLGAE 70 (143)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 34445555555555554332 3456677888899999999999999998877
No 291
>PF00489 IL6: Interleukin-6/G-CSF/MGF family; InterPro: IPR003573 Interleukin-6 (IL6), also refered to as B-cell stimulatory factor-2 (BSF-2) and interferon beta-2, is a cytokine involved in a wide variety of biological functions []. It plays an essential role in the final differentiation of B-cells into IG-secreting cells, as well as inducing myeloma/plasmacytoma growth, nerve cell differentiation and, in hepatocytes, acute phase reactants [, ]. A number of other cytokines may be grouped with IL6 on the basis of sequence similarity [, , ]: these include granulocyte colony-stimulating factor (GCSF) and myelomonocytic growth factor (MGF). GCSF acts in hematopoiesis by affecting the production, differentiation and function of 2 related white cell groups in the blood []. MGF also acts in hematopoiesis, stimulating proliferation and colony formation of normal and transformed avian cells of the myeloid lineage. Cytokines of the IL6/GCSF/MGF family are glycoproteins of about 170 to 180 amino acid residues that contains four conserved cysteine residues involved in two disulphide bonds []. They have a compact, globular fold (similar to other interleukins), stabilised by the 2 disulphide bonds. One half of the structure is dominated by a 4 alpha-helix bundle with a left-handed twist []: the helices are anti-parallel, with 2 overhand connections, which fall into a 2-stranded anti-parallel beta-sheet. The fourth alpha-helix is important to the biological activity of the molecule []. It has been said [] that this family can be extended by the adjunction of LIF and OSM (see the relevant entry IPR001581 from INTERPRO) which seem to be structurally related.; GO: 0005125 cytokine activity, 0006955 immune response, 0005576 extracellular region; PDB: 1P9M_B 2IL6_A 1IL6_A 1ALU_A 3QWR_B 3DUH_C 3D85_C 3D87_C 1BGC_A 2L3Y_A ....
Probab=20.73 E-value=1e+02 Score=22.07 Aligned_cols=48 Identities=23% Similarity=0.360 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 034611 21 QNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSPL 72 (89)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~~~~ 72 (89)
|.+|+-++++|..-. .+++.+-.-+.+|=..|..-|...+....+.|+
T Consensus 67 q~lL~~l~~~~~~~~----~~v~~Lq~~~~~L~~~i~~~~~~~~~~~~~~P~ 114 (154)
T PF00489_consen 67 QILLKYLQGEFPGLK----ENVESLQLDTKDLAQTIKQKMKNPDEVTTPSPT 114 (154)
T ss_dssp HHHHHHTTTSSTTTH----HHHHHHHHHHHHHHHHHHHHHHHHSTTTTSSHC
T ss_pred HHHHHHHHhhCccch----hHHHHHHHHHHHHHHHHHHHhhccccccCCCCc
Confidence 344555666665432 455666666777777777777777666666555
No 292
>PHA03395 p10 fibrous body protein; Provisional
Probab=20.73 E-value=2.2e+02 Score=19.48 Aligned_cols=22 Identities=9% Similarity=0.442 Sum_probs=12.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHhh
Q 034611 42 IDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~qa 63 (89)
+++....||.+-..+.++-+..
T Consensus 37 v~~l~~kLdaq~~~Ltti~tkv 58 (87)
T PHA03395 37 VTEINEKLDAQSASLDTISSAV 58 (87)
T ss_pred HHHHHHHHHhHHHHHHHHHHHH
Confidence 3455556666666666655543
No 293
>PF05816 TelA: Toxic anion resistance protein (TelA); InterPro: IPR008863 This family consists of several prokaryotic TelA like proteins. TelA and KlA are associated with tellurite resistance [] and plasmid fertility inhibition [].
Probab=20.60 E-value=3.9e+02 Score=21.08 Aligned_cols=19 Identities=21% Similarity=0.403 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034611 22 NLLQQMQSRFQTMSDSIVT 40 (89)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~~ 40 (89)
+-++.+-.||+++..+|=.
T Consensus 84 ~~~~~~~~ky~sv~~qId~ 102 (333)
T PF05816_consen 84 NSLERYFAKYQSVQSQIDK 102 (333)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 5677778888888766543
No 294
>KOG4057 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.58 E-value=82 Score=24.13 Aligned_cols=16 Identities=19% Similarity=0.445 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHhhC
Q 034611 49 INELEQSINDLRAEMG 64 (89)
Q Consensus 49 IDdLEksI~dLm~qaG 64 (89)
|+++||+|..+|.-||
T Consensus 14 l~~iEkeI~~~mq~Ag 29 (180)
T KOG4057|consen 14 LVTIEKEIDEMMQCAG 29 (180)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5667777777776665
No 295
>COG0172 SerS Seryl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=20.50 E-value=5.4e+02 Score=21.95 Aligned_cols=59 Identities=22% Similarity=0.451 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHHHHHHH--------------HHHHHHhhhHHHHHHHHHHHHHhh-----CCCCCCCCCCCCCCCCC
Q 034611 22 NLLQQMQSRFQTMSDSIV--------------TKIDEMGNRINELEQSINDLRAEM-----GVEGSPSPLTPSKTNSG 80 (89)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~--------------~riDeMg~RIDdLEksI~dLm~qa-----G~e~~~~~~~~~~~~~~ 80 (89)
.-++.||.+-..+|.+|- ..+.+++.+|.+||..+.++-.+. .+.+.|.+++|.-..+.
T Consensus 43 ~~~e~l~~~rn~~sk~ig~~~~~~~~~~~~l~~e~~~l~~~l~~~e~~~~~~~~~l~~~ll~ipNi~~~~VPvg~de~ 120 (429)
T COG0172 43 RELEELQAERNELSKEIGRALKRGEDDAEELIAEVKELKEKLKELEAALDELEAELDTLLLTIPNIPHESVPVGKDED 120 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhCCCCCccccCcCCCcc
Confidence 345666777766666663 334567777777777777666554 57888888877655433
No 296
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=20.49 E-value=3.6e+02 Score=23.27 Aligned_cols=36 Identities=6% Similarity=0.314 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
...|-+||.+ +...++.+|.+|+..-++.+..+...
T Consensus 375 a~~Lydkl~~----f~~~~~klG~~L~~a~~~y~~A~~~L 410 (475)
T PRK10361 375 ASKLYDKMRL----FVDDMSAIGQSLDKAQDNYRQAMKKL 410 (475)
T ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455543 34678899999999988888876544
No 297
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=20.45 E-value=54 Score=23.93 Aligned_cols=20 Identities=25% Similarity=0.587 Sum_probs=11.1
Q ss_pred HHHHHHhhhHHHHHHHHHHH
Q 034611 40 TKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dL 59 (89)
.|||++|+|+-.=-|.|.||
T Consensus 90 nkMddvSrRL~aEgKdIdeL 109 (128)
T PF15145_consen 90 NKMDDVSRRLTAEGKDIDEL 109 (128)
T ss_pred chHHHHHHHHHhccCCHHHH
Confidence 56777777754333344433
No 298
>PF05811 DUF842: Eukaryotic protein of unknown function (DUF842); InterPro: IPR008560 This family consists of a number of conserved eukaryotic proteins of unknown function. The sequences carry three sets of CxxxC motifs, which might suggest a type of zinc-finger formation.
Probab=20.43 E-value=1.6e+02 Score=20.51 Aligned_cols=22 Identities=36% Similarity=0.484 Sum_probs=18.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHH
Q 034611 12 STADMTVFVQNLLQQMQSRFQT 33 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqt 33 (89)
.....-.+|++=|+++|+|++.
T Consensus 58 pl~~aq~~vq~El~~FQ~rlqr 79 (131)
T PF05811_consen 58 PLQQAQNYVQNELEQFQNRLQR 79 (131)
T ss_pred hHHHHHHHHHHHHHHHHHHHHH
Confidence 3566778999999999999986
No 299
>PRK13936 phosphoheptose isomerase; Provisional
Probab=20.42 E-value=3.4e+02 Score=19.57 Aligned_cols=41 Identities=10% Similarity=0.155 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 23 LLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 23 LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
++++.+..|...-..+....+.....|.+.=.-+.+++.++
T Consensus 3 ~~~~~~~~~~~~~~~l~~~~~~~~~~i~~a~~~~~~~l~~a 43 (197)
T PRK13936 3 LQSRIRQHFEDSIDTKQQAMEVLAPPIAQAVELMVQALLNE 43 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHCC
Confidence 45555666655544444444444444444333444444443
No 300
>PRK08027 flgL flagellar hook-associated protein FlgL; Reviewed
Probab=20.37 E-value=3.5e+02 Score=21.18 Aligned_cols=31 Identities=26% Similarity=0.484 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 54 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEk 54 (89)
|+.....++...+.|....=++|.|+..||.
T Consensus 229 l~~a~~~id~~~~~v~~~~a~vGar~n~le~ 259 (317)
T PRK08027 229 LDKTNRGLKNSLNNVLTVRAELGTQLNELES 259 (317)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333444555555666666778888877773
No 301
>PF04344 CheZ: Chemotaxis phosphatase, CheZ; InterPro: IPR007439 This family represents the bacterial chemotaxis phosphatase, CheZ. This protein forms a dimer characterised by a long four-helix bundle, composed of two helices from each monomer. CheZ dephosphorylates CheY in a reaction that is essential to maintain a continuous chemotactic response to environmental changes. It is thought that CheZ's conserved residue Gln 147 orientates a water molecule for nucleophilic attack at the CheY active site. ; GO: 0003824 catalytic activity, 0050920 regulation of chemotaxis, 0009288 bacterial-type flagellum; PDB: 1KMI_Z 2FMK_B 2PMC_F.
Probab=20.37 E-value=3.8e+02 Score=20.12 Aligned_cols=34 Identities=6% Similarity=0.256 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 30 RFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 30 kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
.|..+...+..-+.++....+.+...+.++|.--
T Consensus 94 e~~~l~~~~~~~l~~~~~~~~~~~~~l~eIm~Aq 127 (214)
T PF04344_consen 94 EFRELAHETDAFLQQVEENAQQLRAQLTEIMMAQ 127 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh
Confidence 3556666666777777777777777777777543
No 302
>PF13990 YjcZ: YjcZ-like protein
Probab=20.32 E-value=3e+02 Score=22.25 Aligned_cols=36 Identities=14% Similarity=0.311 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHH--HHHHhhCC
Q 034611 30 RFQTMSDSIVTKIDEMGNRINELEQSIN--DLRAEMGV 65 (89)
Q Consensus 30 kFqtmS~~I~~riDeMg~RIDdLEksI~--dLm~qaG~ 65 (89)
.|..+.+++..--+.+..|++.||+-|. +|+.++|.
T Consensus 91 ~s~~l~~qL~~l~~~f~qr~~~lE~~L~q~~l~~~a~~ 128 (270)
T PF13990_consen 91 YSPSLRQQLEALAEQFNQRAAHLEKALSQRGLTQQAGE 128 (270)
T ss_pred cChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 4455566666667888999999999886 66766653
Done!