Query 034611
Match_columns 89
No_of_seqs 108 out of 150
Neff 3.4
Searched_HMMs 29240
Date Mon Mar 25 07:12:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034611.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034611hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ci9_A Heat shock factor-bindi 99.9 3.9E-28 1.3E-32 148.1 5.2 48 9-57 1-48 (48)
2 2bez_C E2 glycoprotein; coiled 96.1 0.014 4.9E-07 38.3 5.5 34 17-54 43-76 (77)
3 1wyy_A E2 glycoprotein; membra 94.0 0.11 3.9E-06 37.5 5.6 41 17-61 56-98 (149)
4 3swf_A CGMP-gated cation chann 93.8 0.68 2.3E-05 29.9 8.5 51 12-62 4-54 (74)
5 3swy_A Cyclic nucleotide-gated 93.1 0.39 1.3E-05 28.5 6.0 43 14-56 4-46 (46)
6 2pnv_A Small conductance calci 91.5 0.28 9.4E-06 28.7 3.9 35 20-58 7-41 (43)
7 2ieq_A S glycoprotein, spike g 89.8 0.15 5E-06 35.3 1.9 46 15-61 40-90 (109)
8 1aq5_A Matrilin-1, CMP, cartil 89.6 1 3.5E-05 26.9 5.3 24 33-56 23-46 (47)
9 2pnv_A Small conductance calci 88.6 0.96 3.3E-05 26.3 4.6 36 27-62 3-38 (43)
10 1zva_A E2 glycoprotein; membra 87.9 0.53 1.8E-05 30.8 3.5 22 17-38 13-34 (77)
11 3n06_A Prolactin, PRL; PH depe 86.8 6.6 0.00023 27.8 9.4 55 12-66 63-127 (186)
12 1pzq_A Erythronolide synthase; 84.2 0.36 1.2E-05 30.0 1.2 23 44-66 9-31 (60)
13 3iv1_A Tumor susceptibility ge 83.8 6.7 0.00023 25.3 7.2 46 16-61 5-67 (78)
14 3p8c_D Wiskott-aldrich syndrom 83.5 2.1 7.2E-05 33.1 5.5 40 15-58 43-82 (279)
15 3ci9_A Heat shock factor-bindi 83.3 3.9 0.00013 24.2 5.5 39 21-59 5-43 (48)
16 4gif_A Polycystic kidney disea 82.5 5.6 0.00019 23.4 6.1 39 12-55 5-43 (45)
17 1f6f_A Placental lactogen; 4-h 81.0 5.8 0.0002 28.6 6.8 53 12-64 78-140 (199)
18 3rk6_A Polyadenylate-binding p 77.2 5.8 0.0002 28.9 5.8 53 12-64 15-70 (234)
19 3nmd_A CGMP dependent protein 76.8 11 0.00039 23.9 6.4 50 6-63 14-63 (72)
20 1jek_B ENV polyprotein; envelo 70.8 3.4 0.00012 23.4 2.5 18 47-64 7-24 (36)
21 3p8c_E Probable protein brick1 70.6 18 0.00062 23.1 7.3 49 15-63 20-68 (75)
22 1use_A VAsp, vasodilator-stimu 70.1 14 0.00049 21.8 5.8 31 12-42 5-35 (45)
23 2yru_A Steroid receptor RNA ac 69.6 4.1 0.00014 27.5 3.2 39 12-57 14-53 (118)
24 3hrn_A Transient receptor pote 68.6 19 0.00065 22.6 6.2 39 12-55 4-42 (64)
25 1t3j_A Mitofusin 1; coiled coi 66.9 6.2 0.00021 26.3 3.6 33 25-57 32-64 (96)
26 2er8_A Regulatory protein Leu3 66.6 2.6 9E-05 24.6 1.5 21 40-60 49-69 (72)
27 2fxo_A Myosin heavy chain, car 65.4 25 0.00087 23.3 6.5 23 40-62 83-105 (129)
28 2yko_A LINE-1 ORF1P; RNA-bindi 65.1 4.6 0.00016 30.7 3.0 24 40-63 27-50 (233)
29 2zvf_A Alanyl-tRNA synthetase; 63.7 7.3 0.00025 26.0 3.5 43 20-62 12-54 (171)
30 3te3_A Polycystic kidney disea 63.5 6.4 0.00022 22.5 2.7 18 46-63 13-30 (39)
31 1lwu_B Fibrinogen beta chain; 63.2 9 0.00031 29.7 4.4 48 16-63 7-58 (323)
32 2ba2_A D12_ORF131, hypothetica 61.3 4.2 0.00014 26.9 1.9 18 36-53 67-84 (85)
33 3pp5_A BRK1, protein brick1; t 60.8 29 0.001 22.0 7.3 48 15-62 20-67 (73)
34 3aj1_A Cellulose synthase oper 57.8 33 0.0011 24.9 6.3 48 15-64 20-79 (167)
35 2lme_A Adhesin YADA; trimeric 57.1 11 0.00038 24.5 3.4 22 40-61 16-37 (105)
36 1zme_C Proline utilization tra 57.0 14 0.00049 21.0 3.6 21 42-62 46-66 (70)
37 2z9e_A Cellulose synthase oper 56.8 53 0.0018 23.8 7.3 47 16-64 21-79 (167)
38 3iyn_Q Protein IX, PIX, hexon- 56.7 15 0.00053 26.1 4.3 28 37-64 102-129 (140)
39 3uul_A Utrophin; spectrin repe 56.2 30 0.001 20.7 5.4 17 20-36 83-99 (118)
40 3mq9_A Bone marrow stromal ant 56.0 43 0.0015 25.4 7.0 23 42-64 399-421 (471)
41 1sfc_A VAMP 2, protein (synapt 55.0 39 0.0013 21.7 6.3 20 44-63 55-74 (96)
42 4a25_A DPS, ferritin DPS famil 54.2 17 0.00057 25.0 4.1 29 24-52 55-83 (169)
43 2cf7_A DPR; peroxide resistanc 54.2 34 0.0011 23.1 5.6 30 24-53 48-77 (165)
44 1jcd_A Major outer membrane li 52.0 27 0.00093 20.7 4.3 24 38-61 9-32 (52)
45 2l3l_A Tubulin-specific chaper 51.7 48 0.0016 21.9 5.9 20 39-58 57-76 (111)
46 1hwt_C Protein (heme activator 51.3 5.4 0.00018 23.5 1.1 21 40-60 58-78 (81)
47 3qne_A Seryl-tRNA synthetase, 50.6 79 0.0027 25.8 8.1 57 21-77 46-120 (485)
48 3ghg_A Fibrinogen alpha chain; 50.1 41 0.0014 28.6 6.5 17 47-63 131-147 (562)
49 1t72_A Phosphate transport sys 50.0 52 0.0018 22.1 6.1 48 15-62 22-69 (227)
50 3f42_A Protein HP0035; helicob 49.8 16 0.00054 23.9 3.2 21 20-40 8-28 (99)
51 2xz3_A Maltose ABC transporter 49.6 41 0.0014 25.4 6.0 31 29-59 375-405 (463)
52 2wuj_A Septum site-determining 48.6 24 0.00083 20.6 3.7 32 20-55 25-56 (57)
53 2yo3_A General control protein 47.8 94 0.0032 24.0 8.4 54 4-58 192-255 (268)
54 2xz3_A Maltose ABC transporter 47.8 44 0.0015 25.2 5.9 43 21-63 359-402 (463)
55 2fjc_A Antigen TPF1; mini ferr 47.4 22 0.00075 23.6 3.8 30 24-53 44-73 (156)
56 1n7s_A Vesicle-associated memb 47.1 41 0.0014 19.6 6.3 22 42-63 27-48 (63)
57 1sz7_A BET3 homolog, trafficki 47.0 25 0.00085 25.6 4.2 34 16-50 28-61 (200)
58 2chp_A MRGA, metalloregulation 46.9 23 0.00078 23.5 3.8 43 24-66 43-89 (153)
59 2gtl_O Extracellular hemoglobi 46.6 5.5 0.00019 29.6 0.7 19 41-59 6-24 (215)
60 2bk6_A Non-heme iron-containin 46.1 24 0.00081 23.4 3.8 30 24-53 39-68 (156)
61 1l4a_A Synaptobrevin; snare, s 46.0 33 0.0011 21.1 4.2 22 42-63 38-59 (80)
62 3iq1_A DPS family protein; csg 45.9 24 0.00082 23.5 3.8 31 24-54 49-79 (159)
63 3uno_A Probable bacterioferrit 45.8 73 0.0025 22.2 7.2 37 37-77 141-177 (189)
64 3rmi_A Chorismate mutase prote 45.8 42 0.0014 21.9 4.9 30 33-62 5-34 (114)
65 1pyi_A Protein (pyrimidine pat 45.7 21 0.00073 21.5 3.2 19 41-59 49-67 (96)
66 2hn1_A CORA, magnesium and cob 45.2 27 0.00091 24.6 4.1 18 39-56 186-203 (266)
67 3ak8_A DNA protection during s 44.8 25 0.00086 23.8 3.8 30 24-53 59-88 (167)
68 2z90_A Starvation-inducible DN 44.3 26 0.00089 23.5 3.8 30 24-53 49-78 (161)
69 2gr7_A Adhesin; trimeric autot 44.3 58 0.002 22.1 5.5 42 12-65 23-68 (129)
70 2yjk_A AFP, DPS; metal-binding 44.2 26 0.0009 23.5 3.8 30 24-53 51-80 (161)
71 2d4y_A HAP1, flagellar HOOK-as 44.0 95 0.0032 24.1 7.4 40 24-63 80-119 (463)
72 4eve_A Neutrophil-activating p 43.4 32 0.0011 23.4 4.1 44 24-67 53-100 (164)
73 4ioe_A Secreted protein ESXB; 43.3 40 0.0014 19.7 4.1 17 41-57 64-80 (93)
74 2dq0_A Seryl-tRNA synthetase; 43.0 1.2E+02 0.0042 24.0 8.5 58 21-78 44-119 (455)
75 3kwo_A Putative bacterioferrit 42.9 34 0.0012 22.6 4.1 44 24-67 36-83 (152)
76 1rtm_1 Mannose-binding protein 42.9 30 0.001 21.9 3.8 25 38-62 2-26 (149)
77 2c2j_A DNA-binding stress resp 42.7 26 0.00089 25.3 3.8 30 24-53 78-107 (211)
78 1ses_A Seryl-tRNA synthetase; 42.7 1.1E+02 0.0039 23.8 7.7 55 22-76 42-112 (421)
79 2wlu_A DPS-like peroxide resis 42.3 28 0.00097 23.8 3.8 30 24-53 58-87 (175)
80 3eh0_A UDP-3-O-[3-hydroxymyris 42.1 12 0.00041 27.8 1.9 24 36-59 317-340 (341)
81 3opc_A Uncharacterized protein 41.7 72 0.0025 20.9 7.7 51 17-67 17-75 (154)
82 3coq_A Regulatory protein GAL4 41.3 26 0.0009 20.6 3.1 21 41-61 46-66 (89)
83 2yw6_A DNA protection during s 41.1 30 0.001 23.9 3.8 30 24-53 47-76 (183)
84 1ji5_A DLP-1; dodecamer, four- 40.8 41 0.0014 21.2 4.1 31 24-54 32-62 (142)
85 3pmo_A UDP-3-O-[3-hydroxymyris 40.5 16 0.00054 27.8 2.4 23 37-59 340-362 (372)
86 2bjn_A TPC6, trafficking prote 40.3 13 0.00044 25.8 1.8 33 17-49 10-45 (160)
87 1o9r_A Agrobacterium tumefacie 40.3 39 0.0013 22.5 4.1 30 24-53 48-77 (162)
88 4akv_A Sorting nexin-33; trans 40.2 76 0.0026 24.4 6.3 38 24-61 325-363 (386)
89 2c41_A DPS family DNA-binding 40.2 40 0.0014 22.0 4.1 30 24-53 41-70 (158)
90 1kmi_Z CHEZ, chemotaxis protei 40.2 22 0.00074 25.9 3.0 34 31-67 141-174 (214)
91 1m1j_C Fibrinogen gamma chain; 40.0 1.4E+02 0.0047 23.8 7.9 51 12-63 78-135 (409)
92 1wle_A Seryl-tRNA synthetase; 39.9 1.5E+02 0.0051 24.0 8.5 39 38-76 121-164 (501)
93 1lwu_C Fibrinogen gamma chain; 39.3 83 0.0028 24.4 6.3 27 38-64 31-57 (323)
94 1n1q_A DPS protein; four-helix 39.1 44 0.0015 21.4 4.1 30 24-53 39-68 (149)
95 1jig_A DLP-2; dodecamer, four- 39.0 44 0.0015 21.2 4.1 30 24-53 36-65 (146)
96 2yo3_A General control protein 38.4 1.3E+02 0.0043 23.2 7.2 40 23-62 206-245 (268)
97 3okg_A Restriction endonucleas 37.9 77 0.0026 22.6 5.6 34 28-61 177-210 (412)
98 1xwm_A PHOU, phosphate uptake 37.5 91 0.0031 20.9 6.2 49 14-62 17-65 (217)
99 1cnt_1 CNTF, ciliary neurotrop 37.5 49 0.0017 24.5 4.6 54 19-72 86-139 (187)
100 2dq3_A Seryl-tRNA synthetase; 37.3 1.2E+02 0.004 23.7 7.0 57 21-77 43-117 (425)
101 4egw_A Magnesium transport pro 37.1 33 0.0011 24.5 3.6 14 20-33 158-171 (280)
102 2nps_A VAMP-4, vesicle-associa 37.1 68 0.0023 19.3 4.6 17 46-62 35-51 (74)
103 3nvo_A Zinc transport protein 37.0 21 0.00073 24.9 2.5 32 18-56 147-178 (264)
104 3uun_A Dystrophin; triple heli 36.7 66 0.0023 19.0 5.7 15 20-34 83-97 (119)
105 1hs7_A Syntaxin VAM3; UP-and-D 36.1 47 0.0016 21.8 3.9 26 12-38 4-29 (97)
106 3hd7_A Vesicle-associated memb 35.8 81 0.0028 19.8 6.3 17 46-62 32-48 (91)
107 1tjo_A Iron-rich DPSA-homolog 35.8 49 0.0017 22.5 4.1 44 24-67 60-107 (182)
108 1lwu_C Fibrinogen gamma chain; 35.6 99 0.0034 23.9 6.3 17 40-56 40-56 (323)
109 2pyb_A NAPA, neutrophil activa 35.3 22 0.00075 23.5 2.2 30 24-53 36-65 (151)
110 2bbh_A Divalent cation transpo 35.1 29 0.00098 24.3 2.9 14 21-34 174-187 (269)
111 2xgw_A Peroxide resistance pro 35.0 42 0.0014 23.8 3.8 30 24-53 74-103 (199)
112 1gl2_A Endobrevin; membrane pr 34.8 71 0.0024 18.8 6.3 18 46-63 36-53 (65)
113 1sum_B Phosphate transport sys 34.2 1.1E+02 0.0038 20.9 6.8 48 15-62 18-65 (235)
114 1t72_A Phosphate transport sys 34.0 1.1E+02 0.0036 20.6 6.5 49 12-60 122-170 (227)
115 2h8e_A Crossover junction endo 33.9 25 0.00085 22.6 2.3 17 49-65 71-87 (120)
116 2c2u_A DPS, DNA-binding stress 33.7 36 0.0012 24.4 3.2 30 24-53 91-120 (207)
117 1avy_A Fibritin, gpwac M; bact 33.4 89 0.003 20.0 4.8 25 37-61 19-43 (74)
118 1yf2_A Type I restriction-modi 33.4 1.2E+02 0.0041 21.5 6.0 37 27-63 380-416 (425)
119 2zdi_C Prefoldin subunit alpha 33.0 75 0.0026 21.1 4.6 32 29-60 19-53 (151)
120 3oj5_A Ferritin family protein 32.9 1.1E+02 0.0038 20.5 6.2 55 18-77 123-177 (189)
121 4i0x_B ESAT-6-like protein MAB 32.9 86 0.0029 19.2 5.1 22 31-52 23-44 (103)
122 2oqq_A Transcription factor HY 32.8 74 0.0025 18.4 4.2 25 38-62 8-32 (42)
123 3hnw_A Uncharacterized protein 32.4 81 0.0028 21.4 4.8 51 12-62 29-97 (138)
124 3dyt_A Sorting nexin-9; 3-heli 32.2 1.3E+02 0.0043 22.7 6.3 38 24-61 305-343 (366)
125 2d5k_A DPS, DPS family protein 31.6 66 0.0023 21.0 4.1 30 24-53 38-67 (156)
126 3rrk_A V-type ATPase 116 kDa s 31.1 1E+02 0.0034 22.6 5.4 23 40-62 113-138 (357)
127 2c5k_T Syntaxin TLG1, T-snare 30.9 1.1E+02 0.0036 19.6 5.4 45 14-58 9-61 (95)
128 2i0m_A Phosphate transport sys 30.4 1.2E+02 0.0041 20.2 6.9 49 15-63 18-66 (216)
129 1fxk_C Protein (prefoldin); ar 30.2 1.1E+02 0.0038 19.6 5.8 33 29-61 11-43 (133)
130 1fzc_B Fibrin; blood coagulati 30.1 15 0.0005 28.5 0.7 25 39-63 36-60 (328)
131 3lt7_A Adhesin YADA; adhesion, 29.9 95 0.0032 19.3 4.3 21 40-60 34-54 (64)
132 3b5n_A Synaptobrevin homolog 1 29.7 85 0.0029 18.2 6.3 18 46-63 29-46 (61)
133 2ovc_A Potassium voltage-gated 29.7 39 0.0013 18.5 2.3 13 45-57 8-20 (33)
134 3pp5_A BRK1, protein brick1; t 29.0 1.1E+02 0.0038 19.3 6.2 40 15-58 31-70 (73)
135 2nrj_A HBL B protein; enteroto 28.8 1.6E+02 0.0056 22.4 6.4 32 31-62 160-191 (346)
136 1sig_A Sigma70, RNA polymerase 28.8 1.7E+02 0.0058 21.4 6.8 32 34-65 156-188 (339)
137 1ygt_A Cytoplasmic dynein ligh 28.8 76 0.0026 20.2 4.0 26 1-27 1-26 (111)
138 3r2v_A PB2 C-terminal subunit; 28.6 49 0.0017 24.7 3.3 33 7-39 46-79 (216)
139 1x8y_A Lamin A/C; structural p 27.9 1.1E+02 0.0038 19.0 4.5 36 20-62 15-50 (86)
140 1xwm_A PHOU, phosphate uptake 27.9 1.3E+02 0.0045 20.1 5.2 48 13-60 119-166 (217)
141 3lss_A Seryl-tRNA synthetase; 27.7 2.4E+02 0.0084 22.8 8.0 36 42-77 113-153 (484)
142 2vxx_A Starvation induced DNA 27.6 81 0.0028 21.3 4.1 30 25-54 60-89 (192)
143 3emo_C HIA (adhesin); transmem 27.4 1.6E+02 0.0055 20.6 7.4 48 5-65 50-101 (162)
144 3p8c_E Probable protein brick1 27.4 1.2E+02 0.0042 19.2 5.5 37 17-57 33-69 (75)
145 1huw_A Human growth hormone; 2 27.4 36 0.0012 24.2 2.4 53 12-64 71-129 (191)
146 1fxk_A Prefoldin; archaeal pro 26.8 1.1E+02 0.0038 18.6 6.3 22 40-61 79-100 (107)
147 3mtu_E Head morphogenesis prot 26.8 86 0.0029 20.1 3.9 14 22-35 30-43 (77)
148 3efg_A Protein SLYX homolog; x 26.6 1.2E+02 0.0041 18.8 4.6 17 46-62 41-57 (78)
149 3g67_A Methyl-accepting chemot 26.5 1.8E+02 0.0061 20.8 7.5 10 15-24 11-20 (213)
150 2w83_C C-JUN-amino-terminal ki 26.4 1.3E+02 0.0045 19.3 8.1 47 12-58 3-55 (77)
151 1ydx_A Type I restriction enzy 26.2 1.8E+02 0.0061 21.0 6.0 37 27-63 356-392 (406)
152 1m1j_B Fibrinogen beta chain; 26.0 2.7E+02 0.0092 22.7 8.0 25 39-63 174-198 (464)
153 3cue_B Transport protein parti 25.8 63 0.0022 25.0 3.6 35 14-49 60-94 (283)
154 2akf_A Coronin-1A; coiled coil 25.7 89 0.0031 17.1 3.3 10 47-56 20-29 (32)
155 3p8c_F ABL interactor 2; actin 25.0 1.9E+02 0.0064 20.6 6.5 47 12-58 47-93 (159)
156 1sum_B Phosphate transport sys 25.0 1.4E+02 0.0049 20.3 5.0 48 12-59 118-165 (235)
157 2y7c_A Type-1 restriction enzy 24.9 96 0.0033 22.4 4.3 18 38-55 381-398 (464)
158 1yf2_A Type I restriction-modi 24.9 1.8E+02 0.0061 20.5 5.6 36 28-63 171-206 (425)
159 2iub_A CORA, divalent cation t 24.7 68 0.0023 24.0 3.6 25 19-43 181-205 (363)
160 1gs9_A Apolipoprotein E, APOE4 24.7 52 0.0018 22.9 2.7 16 38-53 64-79 (165)
161 1bgf_A STAT-4; transcription f 24.5 80 0.0028 21.3 3.6 24 13-36 51-74 (124)
162 2yko_A LINE-1 ORF1P; RNA-bindi 24.5 33 0.0011 25.9 1.8 25 37-61 3-27 (233)
163 3t98_B Nucleoporin NUP58/NUP45 24.0 1.1E+02 0.0038 19.7 4.1 31 31-61 10-40 (93)
164 3ajm_A Programmed cell death p 23.9 1E+02 0.0035 23.1 4.4 32 31-62 99-137 (213)
165 4dnd_A Syntaxin-10, SYN10; str 23.9 1.7E+02 0.0057 19.6 5.6 43 15-57 31-91 (130)
166 3r2k_A Bacterioferritin, BFR; 23.9 80 0.0027 20.0 3.3 29 24-52 37-65 (154)
167 3p8c_D Wiskott-aldrich syndrom 23.7 2.2E+02 0.0076 21.7 6.3 43 20-63 34-80 (279)
168 2zdi_C Prefoldin subunit alpha 23.7 1.6E+02 0.0056 19.4 5.1 47 12-62 95-141 (151)
169 2xze_Q Charged multivesicular 23.4 46 0.0016 19.0 1.9 14 21-34 25-38 (40)
170 3na7_A HP0958; flagellar bioge 23.4 1.1E+02 0.0036 22.0 4.3 23 40-62 97-119 (256)
171 2c0j_B R32611_2; palmitate; HE 23.4 60 0.0021 22.4 2.8 33 17-49 9-45 (160)
172 1deq_A Fibrinogen (alpha chain 23.3 2.1E+02 0.0073 23.2 6.4 35 28-62 108-149 (390)
173 2e9x_C GINS complex subunit 3; 23.3 60 0.0021 23.5 2.9 43 17-59 135-181 (219)
174 2clb_A DPS-like protein; DI-ir 23.0 62 0.0021 22.2 2.9 28 26-53 58-85 (188)
175 2dae_A KIAA0733 protein; mitog 22.9 19 0.00064 23.3 0.1 40 22-63 12-51 (75)
176 3tul_A Cell invasion protein S 22.6 1.9E+02 0.0066 20.8 5.4 36 28-63 47-92 (158)
177 1buu_A Protein (mannose-bindin 22.6 1E+02 0.0035 20.0 3.8 18 42-59 25-42 (168)
178 1yzm_A FYVE-finger-containing 22.5 52 0.0018 19.5 2.1 19 40-62 25-43 (51)
179 4fm3_A Uncharacterized hypothe 22.5 58 0.002 21.6 2.5 16 49-64 80-95 (98)
180 3v1a_A Computational design, M 22.1 55 0.0019 19.3 2.1 19 40-62 24-42 (48)
181 2qqy_A Sigma B operon; dodecam 22.0 1.4E+02 0.0047 18.3 4.1 28 25-52 42-69 (149)
182 3onj_A T-snare VTI1; helix, HA 21.9 1.6E+02 0.0053 18.5 5.1 24 23-46 2-25 (97)
183 1m1j_A Fibrinogen alpha subuni 21.8 3.5E+02 0.012 22.6 7.5 37 26-62 104-147 (491)
184 3s84_A Apolipoprotein A-IV; fo 21.5 2.5E+02 0.0085 20.7 6.7 48 13-60 200-247 (273)
185 3mq1_A Mite allergen DER P 5; 21.5 98 0.0034 20.9 3.5 30 22-55 4-33 (103)
186 1woz_A 177AA long conserved hy 21.4 1.3E+02 0.0045 21.2 4.4 42 20-63 50-96 (177)
187 2zqm_A Prefoldin beta subunit 21.3 1.5E+02 0.0052 18.2 6.3 23 39-61 90-112 (117)
188 2jmh_A BLO T 5, mite allergen 21.3 1.6E+02 0.0056 20.3 4.6 29 23-55 20-48 (119)
189 2l5g_B Putative uncharacterize 21.2 1E+02 0.0035 17.8 3.1 15 40-54 23-37 (42)
190 1xdx_A Tctex1 light chain prot 21.0 1.7E+02 0.0058 18.6 6.3 21 7-27 9-29 (114)
191 3lyn_A Sperm lysin; abalone ly 20.9 63 0.0022 22.8 2.5 23 25-47 56-78 (136)
192 1nog_A Conserved hypothetical 20.9 1.4E+02 0.0047 21.1 4.4 42 20-63 51-97 (177)
193 2i0m_A Phosphate transport sys 20.8 1.9E+02 0.0066 19.1 5.8 48 13-60 119-166 (216)
194 2vy8_A Polymerase basic protei 20.7 88 0.003 22.4 3.3 31 9-39 49-80 (157)
195 3puk_A Syntaxin-binding protei 20.6 1.2E+02 0.004 24.7 4.4 47 11-57 322-373 (592)
196 1nfn_A Apolipoprotein E3; lipi 20.3 1.1E+02 0.0038 21.5 3.7 50 8-57 21-83 (191)
197 1ci6_A Transcription factor AT 20.2 1.4E+02 0.0049 17.5 5.4 21 40-60 37-57 (63)
198 1ecm_A Endo-oxabicyclic transi 20.1 81 0.0028 19.8 2.8 21 42-62 7-27 (109)
199 3pwx_A Putative flagellar HOOK 20.1 2.4E+02 0.0083 20.0 6.5 36 24-59 176-211 (239)
200 3he4_A Synzip6; heterodimeric 20.0 1.5E+02 0.0051 17.8 3.8 25 36-60 23-51 (56)
201 1szq_A 2-methylcitrate dehydra 20.0 1.3E+02 0.0044 23.8 4.4 37 25-61 437-479 (483)
No 1
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=99.94 E-value=3.9e-28 Score=148.06 Aligned_cols=48 Identities=54% Similarity=0.876 Sum_probs=43.1
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034611 9 PKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIN 57 (89)
Q Consensus 9 pkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~ 57 (89)
|+ +++|||+||++||+|||+||++||++|++||||||+|||+||+||+
T Consensus 1 p~-~~~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdLE~si~ 48 (48)
T 3ci9_A 1 PK-TVQDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDLEKNIA 48 (48)
T ss_dssp CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhcC
Confidence 56 9999999999999999999999999999999999999999999985
No 2
>2bez_C E2 glycoprotein; coiled coil, membrane fusion, severe acute respiratory syndrome, viral protein; 1.6A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_A 1zvb_A
Probab=96.06 E-value=0.014 Score=38.28 Aligned_cols=34 Identities=21% Similarity=0.483 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034611 17 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 54 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEk 54 (89)
.+.+..|+.|++..|+.+| +-|.|.-.|+|.||+
T Consensus 43 ~~aL~~L~~qL~~NFgAIS----ssi~dIy~RLd~leA 76 (77)
T 2bez_C 43 AQALNTLVKQLSSNFGAIS----SVLNDILSRLDKVEA 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHhhhc
Confidence 4567889999999999987 556799999999996
No 3
>1wyy_A E2 glycoprotein; membrane fusion, severe acute respiratory syndrome, viral PR; 2.20A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1wnc_A 2fxp_A
Probab=94.00 E-value=0.11 Score=37.50 Aligned_cols=41 Identities=22% Similarity=0.468 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHH
Q 034611 17 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS--INDLRA 61 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEks--I~dLm~ 61 (89)
.+.+..|+.|++..|+.+| +-|.|.-.|+|.||+. |.-|++
T Consensus 56 ~~aL~~l~~qL~~nFgAIS----ssi~dIy~rLd~leAdaQVDRLIt 98 (149)
T 1wyy_A 56 AQALNTLVKQLSSNFGAIS----SVLNDILSRLDKVEAEVQIDRLIT 98 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHHHhhhHHH----HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567889999999999887 5567999999999986 445555
No 4
>3swf_A CGMP-gated cation channel alpha-1; coiled-coil, assembly domain, transport protein; 2.14A {Bos taurus}
Probab=93.78 E-value=0.68 Score=29.92 Aligned_cols=51 Identities=12% Similarity=0.240 Sum_probs=41.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
+..+-..-+++-|+.||.||..+-.+.-+-=--|-.||-.||+.+..+...
T Consensus 4 dlEEKv~~LE~sld~LQTrfARLLaEy~ssQ~KLKqRit~LE~~~~~~~~~ 54 (74)
T 3swf_A 4 GLEEKVTRMESSVDLLQTRFARILAEYESMQQKLKQRLTKVEKFLKPLIDT 54 (74)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCC
Confidence 455666778889999999999877776666667789999999999987654
No 5
>3swy_A Cyclic nucleotide-gated cation channel alpha-3; coiled-coil, assembly domain, transport protein; 1.90A {Homo sapiens}
Probab=93.13 E-value=0.39 Score=28.47 Aligned_cols=43 Identities=19% Similarity=0.307 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 034611 14 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI 56 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI 56 (89)
.|-..-+++-|+.||.||..+-.+.-+-=--|-.||-.||..+
T Consensus 4 Eekv~~Le~~ld~LqTr~ArLlae~~ssq~KlKqRit~lE~~v 46 (46)
T 3swy_A 4 EEKVEQLGSSLDTLQTRFARLLAEYNATQMKMKQRLSQLESQV 46 (46)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455667888999999999877766666666778999998753
No 6
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=91.50 E-value=0.28 Score=28.71 Aligned_cols=35 Identities=14% Similarity=0.351 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 58 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~d 58 (89)
|-.|+..|++|= +.+=.||+-|..|+|.|..++..
T Consensus 7 mydlvsel~~r~----e~LE~Ri~~LE~KLd~L~~~l~a 41 (43)
T 2pnv_A 7 MYDMISDLNERS----EDFEKRIVTLETKLETLIGSIHA 41 (43)
T ss_dssp HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHc
Confidence 334444444443 34446666777777777666653
No 7
>2ieq_A S glycoprotein, spike glycoprotein, peplomer protein, E2; membrane fusion, virus entry, six-HEL bundle, viral protein; 1.75A {Human coronavirus}
Probab=89.83 E-value=0.15 Score=35.29 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHhhhHHHHHHHHHHHHH
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKID-----EMGNRINELEQSINDLRA 61 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riD-----eMg~RIDdLEksI~dLm~ 61 (89)
+....+..|++|+...|+..|..|- +|= +.-.|||.||+.-..|.+
T Consensus 40 ~q~~aLs~ll~QLn~NF~A~s~~lq-~~fn~t~lni~~elD~LEa~A~~l~~ 90 (109)
T 2ieq_A 40 QQGSALNHLTSQLRHNFQSGGRGSG-RGGNLTYLNLSSELKQLEAKTASLFQ 90 (109)
T ss_dssp HHHHHHHHHHCCC------------------CCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCCcchHHH-HHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3456677888888888887775553 221 667788888888777764
No 8
>1aq5_A Matrilin-1, CMP, cartilage matrix protein; coiled-coil, heptad repeat, interchain disulfide bonds, oligomerization domain, trimer; NMR {Gallus gallus} SCOP: h.1.6.1
Probab=89.62 E-value=1 Score=26.92 Aligned_cols=24 Identities=25% Similarity=0.549 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHH
Q 034611 33 TMSDSIVTKIDEMGNRINELEQSI 56 (89)
Q Consensus 33 tmS~~I~~riDeMg~RIDdLEksI 56 (89)
+.-..+..|+++|+.||-.||+.|
T Consensus 23 ~~l~~Lt~kL~~vt~rle~lEnrl 46 (47)
T 1aq5_A 23 ELINTLQQKLEAVAKRIEALENKI 46 (47)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 333444566789999999999865
No 9
>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}
Probab=88.65 E-value=0.96 Score=26.35 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 27 MQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 27 mQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
||+.--.|-..+-+|=+++-.||+.||..+.+|-.+
T Consensus 3 mQn~mydlvsel~~r~e~LE~Ri~~LE~KLd~L~~~ 38 (43)
T 2pnv_A 3 HMNIMYDMISDLNERSEDFEKRIVTLETKLETLIGS 38 (43)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 556666677778899999999999999999998765
No 10
>1zva_A E2 glycoprotein; membrane fusion, virus entry, coiled C conformational change, viral protein; 1.50A {Sars coronavirus} SCOP: h.3.3.1 PDB: 1zv8_B
Probab=87.94 E-value=0.53 Score=30.80 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 034611 17 TVFVQNLLQQMQSRFQTMSDSI 38 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I 38 (89)
.+.+..|+.|++..|+.+|..|
T Consensus 13 ~~aL~~L~~qL~~NFgAISSsi 34 (77)
T 1zva_A 13 AQALNTLVKQLSSNFGAISSVL 34 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHH
Confidence 4678899999999999988654
No 11
>3n06_A Prolactin, PRL; PH dependence, hematopoietic cytokine, hormone-hormone recep complex; 2.00A {Homo sapiens} PDB: 3nce_A 3mzg_A 3ncc_A 2q98_A 3d48_P 3ncb_A 3n0p_A 3ncf_A 1n9d_A 1rw5_A 3npz_A 3ew3_A
Probab=86.77 E-value=6.6 Score=27.81 Aligned_cols=55 Identities=13% Similarity=0.296 Sum_probs=42.7
Q ss_pred CHHHHHHHHHHHHHH-------HHHHHH---HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCC
Q 034611 12 STADMTVFVQNLLQQ-------MQSRFQ---TMSDSIVTKIDEMGNRINELEQSINDLRAEMGVE 66 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQ-------mQ~kFq---tmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e 66 (89)
+..+|..++-.||+- ++.-+. ..++.|+.|.-++..++.+|++-|..|+.+.+..
T Consensus 63 s~~~LL~~~l~Ll~SW~~PL~~L~~~~~~l~~~~~~il~Kakei~e~~~~L~egi~~i~~~~~~~ 127 (186)
T 3n06_A 63 NQKDFLSLIVSILRSWNEPLYHLVTEVRGMQEAPEAILSKAVEIEEQTKRLLERMELIVSQVHPE 127 (186)
T ss_dssp CHHHHHHHHHHHHHHTHHHHHHHHHHHHTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 467888777777653 333333 3468999999999999999999999999988543
No 12
>1pzq_A Erythronolide synthase; four helix bundle, homodimer, transferase; NMR {Saccharopolyspora erythraea} SCOP: a.34.3.1
Probab=84.17 E-value=0.36 Score=29.97 Aligned_cols=23 Identities=39% Similarity=0.797 Sum_probs=19.5
Q ss_pred HHhhhHHHHHHHHHHHHHhhCCC
Q 034611 44 EMGNRINELEQSINDLRAEMGVE 66 (89)
Q Consensus 44 eMg~RIDdLEksI~dLm~qaG~e 66 (89)
++|.|+|+|||.+..|-.+.|.+
T Consensus 9 digdrldelekalealsaedghd 31 (60)
T 1pzq_A 9 DIGDRLDELEKALEALSAEDGHD 31 (60)
T ss_dssp TTHHHHHHHHHHHHHHTTSSCCH
T ss_pred chhhHHHHHHHHHHHhccccccc
Confidence 57899999999999998877754
No 13
>3iv1_A Tumor susceptibility gene 101 protein; coiled_COIL, tumorigenesis, CELL_cycle regulation, alternative splicing, cell cycle, cell division; HET: MSE; 2.50A {Homo sapiens}
Probab=83.79 E-value=6.7 Score=25.31 Aligned_cols=46 Identities=20% Similarity=0.403 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhhhHH----HHHHHHHHHHH
Q 034611 16 MTVFVQNLLQQMQSRFQTMSDSIV-------------TKIDEMGNRIN----ELEQSINDLRA 61 (89)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~-------------~riDeMg~RID----dLEksI~dLm~ 61 (89)
|+++=+.|=..|+.+|.....+|- .||++|-+||+ +|++||.-|-.
T Consensus 5 lSAVeDKLRrrl~E~~~q~qaEl~sLrrT~~EL~~G~~KL~~mi~~l~~E~~~l~~ni~~lk~ 67 (78)
T 3iv1_A 5 ISAVSDKLRWRMKEEMDRAQAELNALKRTEEDLKKGHQKLEEMVTRLDQEVAEVDKNIELLKK 67 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666666778888877766664 46888888775 68888876643
No 14
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=83.53 E-value=2.1 Score=33.09 Aligned_cols=40 Identities=8% Similarity=0.402 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 58 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~d 58 (89)
+|+.+..++++.|..-|.. |..|+..+..||+.|+..+..
T Consensus 43 dLs~~A~dIF~eL~~e~~~----~~~R~~~L~~RI~~L~~~v~~ 82 (279)
T 3p8c_D 43 SLSKYAEDIFGELFNEAHS----FSFRVNSLQERVDRLSVSVTQ 82 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhccc
Confidence 4555555555555555544 347888888888888887753
No 15
>3ci9_A Heat shock factor-binding protein 1; triple helix, nucleus, transcription; 1.80A {Homo sapiens}
Probab=83.30 E-value=3.9 Score=24.17 Aligned_cols=39 Identities=33% Similarity=0.499 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 21 QNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
+.|-.-+|+=++.|.+.+-.-=+.+-+|||+.-..|.+|
T Consensus 5 ~dLt~~vq~LL~qmq~kFq~mS~~I~~riDdM~~RIDdL 43 (48)
T 3ci9_A 5 QDLTSVVQTLLQQMQDKFQTISDQIIGRIDDMSSRIDDL 43 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 445555666666666555544466667899999988876
No 16
>4gif_A Polycystic kidney disease 2-like 1 protein; coiled-coil, trimer, Trp channel, transient receptor potenti channel, polycystic kidney disease (PKD); 2.80A {Homo sapiens}
Probab=82.51 E-value=5.6 Score=23.44 Aligned_cols=39 Identities=26% Similarity=0.573 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS 55 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEks 55 (89)
|.+|+..+...+|| .++.-..|.++||-+++++.-+|++
T Consensus 5 s~eeF~~L~rRVlq-----lE~~l~gI~S~idav~~Kl~~~Er~ 43 (45)
T 4gif_A 5 SGEEFYMLTRRVLQ-----LETVLEGVVSQIDAVGSKLKMLERK 43 (45)
T ss_dssp CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44556555555543 4555567889999999999888874
No 17
>1f6f_A Placental lactogen; 4-helical bundle, alpha helical bundle, ternary complex, FN III domains, beta sheet domains, cytokine-receptor complex; 2.30A {Ovis aries} SCOP: a.26.1.1
Probab=81.01 E-value=5.8 Score=28.61 Aligned_cols=53 Identities=15% Similarity=0.258 Sum_probs=40.9
Q ss_pred CHHHHHHHHHHHH-------HHHHHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 12 STADMTVFVQNLL-------QQMQSRFQT---MSDSIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 12 s~~dLT~~Vq~LL-------qQmQ~kFqt---mS~~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
+..+|-.++-.|| +.|..-|.+ +++.|++|-.++..++.+|+.-|.-|+.+.+
T Consensus 78 s~~~LL~~~l~Ll~sW~~PL~~L~~~~~~~~~~p~~ilska~~I~ek~~~L~egi~~i~~~~~ 140 (199)
T 1f6f_A 78 EDKILFKLVISLLHSWDEPLHHAVTELANSKGTSPALLTKAQEIKEKAKVLVDGVEVIQKRIH 140 (199)
T ss_dssp CHHHHHHHHHHHHHTTHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCcchhcchHHHHHHHHHHHHHHHHHHHHHcc
Confidence 4667777776664 455666655 4588999999999999999999999999864
No 18
>3rk6_A Polyadenylate-binding protein-interacting protein; heat fold, PABP, EIF4A, EIF3, translation regulator; 2.00A {Homo sapiens}
Probab=77.20 E-value=5.8 Score=28.86 Aligned_cols=53 Identities=11% Similarity=0.270 Sum_probs=38.6
Q ss_pred CHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 12 STADMTVFVQNLLQQMQ---SRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ---~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
..+.|...|..+|+.|- .+|+.++++|+.-+..--+..+.|..=|.-++.+|=
T Consensus 15 ~~~~l~r~v~~iLNkLT~~p~~f~~l~~~i~~~~~~~~~~~~~L~~vi~lIfekAi 70 (234)
T 3rk6_A 15 RGSTLSEYVQDFLNHLTEQPGSFETEIEQFAETLNGCVTTDDALQELVELIYQQAT 70 (234)
T ss_dssp ---CHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHccCChhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 46789999999999999 899999999998654333345567766666666653
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=76.75 E-value=11 Score=23.94 Aligned_cols=50 Identities=22% Similarity=0.343 Sum_probs=33.1
Q ss_pred CCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 6 SEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 6 s~dpkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
|-..-.+..+|-..++.-.++++.|= .+|++.=.||++.|..|..|-.+.
T Consensus 14 ~~~~mgti~eLq~~L~~K~eELr~kd--------~~I~eLEk~L~ekd~eI~~LqseL 63 (72)
T 3nmd_A 14 SIEGRGSLRDLQYALQEKIEELRQRD--------ALIDELELELDQKDELIQMLQNEL 63 (72)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334455666666666666655543 568999999999999999998775
No 20
>1jek_B ENV polyprotein; envelope glycoprotein, retrovirus, HIV, SIV, GP41, viral Pro; 1.50A {Synthetic} SCOP: h.3.2.1
Probab=70.75 E-value=3.4 Score=23.38 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.9
Q ss_pred hhHHHHHHHHHHHHHhhC
Q 034611 47 NRINELEQSINDLRAEMG 64 (89)
Q Consensus 47 ~RIDdLEksI~dLm~qaG 64 (89)
++||.|+.+|..|+.++-
T Consensus 7 reI~~~t~nIy~LLeeAq 24 (36)
T 1jek_B 7 EEIEQHEGNLSLLLREAA 24 (36)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 689999999999998863
No 21
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=70.56 E-value=18 Score=23.14 Aligned_cols=49 Identities=10% Similarity=0.314 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
|+..+|...+..+-+-...-+...-.|+-.+..||..||++|.=|=++.
T Consensus 20 e~ie~in~~I~~~v~FLN~F~~sce~KLa~ln~KL~~LEr~L~iLEAkl 68 (75)
T 3p8c_E 20 EYIEIITSSIKKIADFLNSFDMSCRSRLATLNEKLTALERRIEYIEARV 68 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666555555444444455566888889999999999998765553
No 22
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=70.12 E-value=14 Score=21.75 Aligned_cols=31 Identities=19% Similarity=0.423 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKI 42 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~ri 42 (89)
+..||-.|=+.+|+.|..-+|.|=..||..|
T Consensus 5 ~~~dle~~KqEIL~E~RkElqK~K~EIIeAi 35 (45)
T 1use_A 5 DYSDLQRVKQELLEEVKKELQKVKEEIIEAF 35 (45)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5689999999999999999999999999877
No 23
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=69.65 E-value=4.1 Score=27.46 Aligned_cols=39 Identities=13% Similarity=0.193 Sum_probs=23.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHH
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTK-IDEMGNRINELEQSIN 57 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~r-iDeMg~RIDdLEksI~ 57 (89)
-..+|...++.+|+.- +.....| +||+.+||+-|...++
T Consensus 14 ~i~~l~~~l~~~l~~~-------~~~~~k~~~~D~~KRL~~LfdkLn 53 (118)
T 2yru_A 14 LIEDVLRPLEQALEDC-------HGHTKKQVCDDISRRLALLREQWA 53 (118)
T ss_dssp CHHHHHHHHHHHHHHH-------HTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444555555544422 1233344 7999999998887655
No 24
>3hrn_A Transient receptor potential (Trp) channel subfamily P member 2 (TRPP2); coiled coil, helix bundle, trimer, calcium, disease mutation, glycoprotein; 1.90A {Homo sapiens} PDB: 3hro_A
Probab=68.58 E-value=19 Score=22.60 Aligned_cols=39 Identities=26% Similarity=0.386 Sum_probs=28.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS 55 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEks 55 (89)
|.+|+..+...+|| .++.-..|.++||-++.++--+|++
T Consensus 4 S~EEF~~L~rRVlq-----LE~sl~gI~SqIDaV~~KL~~~Er~ 42 (64)
T 3hrn_A 4 SYEEFQVLVRRVDR-----MEHSIGSIVSKIDAVIVKLEIMERA 42 (64)
T ss_dssp CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34566656555543 4555667899999999999999985
No 25
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=66.87 E-value=6.2 Score=26.34 Aligned_cols=33 Identities=18% Similarity=0.391 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034611 25 QQMQSRFQTMSDSIVTKIDEMGNRINELEQSIN 57 (89)
Q Consensus 25 qQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~ 57 (89)
+.|..-|..+..++=.--.||-..|++|++.|+
T Consensus 32 qELs~tfarLc~~Vd~t~~eL~~EI~~L~~eI~ 64 (96)
T 1t3j_A 32 QEMATTFARLCQQVDMTQKHLEEEIARLSKEID 64 (96)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444554444444444444444444444443
No 26
>2er8_A Regulatory protein Leu3; Zn(2)Cys(6) binuclear cluster motif, transcription activator/DNA complex; 2.85A {Saccharomyces cerevisiae} PDB: 2ere_A 2erg_A
Probab=66.59 E-value=2.6 Score=24.57 Aligned_cols=21 Identities=19% Similarity=0.509 Sum_probs=15.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q 034611 40 TKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm 60 (89)
.+|++|-.||+.||..|..|-
T Consensus 49 ~~~~~Le~ri~~Le~~l~~l~ 69 (72)
T 2er8_A 49 ARNEAIEKRFKELTRTLTNLT 69 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 567777788888888877653
No 27
>2fxo_A Myosin heavy chain, cardiac muscle beta isoform; coiled coil (dimeric, parallel), familial hypertrophic cardiomyopathy, FHC-associated mutant E924K; 2.50A {Homo sapiens} SCOP: h.1.26.1 PDB: 2fxm_A
Probab=65.41 E-value=25 Score=23.27 Aligned_cols=23 Identities=30% Similarity=0.518 Sum_probs=17.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 034611 40 TKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm~q 62 (89)
.+|.++..|+++.|...++|...
T Consensus 83 ~~l~el~~rleeeee~~~~L~~~ 105 (129)
T 2fxo_A 83 AKVKEMNKRLEDEEEMNAELTAK 105 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888877777777653
No 28
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=65.06 E-value=4.6 Score=30.65 Aligned_cols=24 Identities=21% Similarity=0.180 Sum_probs=15.5
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 40 TKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm~qa 63 (89)
........||..||.++.||-+-.
T Consensus 27 q~eq~~ekrik~ne~sL~dL~d~i 50 (233)
T 2yko_A 27 REGKFREKRIKRNEQSLQEIWDYV 50 (233)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334555667777777777776653
No 29
>2zvf_A Alanyl-tRNA synthetase; C-terminal, oligomerization domain, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase, nucleotide-binding; 3.20A {Archaeoglobus fulgidus}
Probab=63.67 E-value=7.3 Score=26.03 Aligned_cols=43 Identities=12% Similarity=0.262 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
.+.+|.++...|..=.++|..|+..+-.++.+||+.|..|..+
T Consensus 12 ~~~~l~~~a~~Lk~~~~~l~~~v~~l~~e~k~l~ke~~~l~~~ 54 (171)
T 2zvf_A 12 MERLLREASSILRVEPAKLPKTVERFFEEWKDQRKEIERLKSV 54 (171)
T ss_dssp HHHHHHHHHHTTTCCTTSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566667777675434688899999999999999998888765
No 30
>3te3_A Polycystic kidney disease 2-like 1 protein; trimeric coiled-coil, oligomerization domain, C-terminal CYT regulatory domain, metal transport; 2.69A {Homo sapiens}
Probab=63.52 E-value=6.4 Score=22.54 Aligned_cols=18 Identities=17% Similarity=0.394 Sum_probs=15.1
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 034611 46 GNRINELEQSINDLRAEM 63 (89)
Q Consensus 46 g~RIDdLEksI~dLm~qa 63 (89)
.+|++.||.+|..++.+.
T Consensus 13 ~rRVlqlE~~l~gI~S~i 30 (39)
T 3te3_A 13 TRRVLQLETVLEGVVSQI 30 (39)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 578889999999998874
No 31
>1lwu_B Fibrinogen beta chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_B*
Probab=63.19 E-value=9 Score=29.71 Aligned_cols=48 Identities=13% Similarity=0.317 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHH-HHHHHH---HHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 16 MTVFVQNLLQQMQSRFQ-TMSDSI---VTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 16 LT~~Vq~LLqQmQ~kFq-tmS~~I---~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
++.-|+....+|+..++ +++.+| -.+++.+..+|..||..|..++...
T Consensus 7 ~~~~le~~~~~ik~~~~~~~~~~I~~Lq~~le~L~~KI~~LE~~v~~q~~~~ 58 (323)
T 1lwu_B 7 AQKEIENRYKEVKIRIESTVAGSLRSMKSVLEHLRAKMQRMEEAIKTQKELC 58 (323)
T ss_dssp CHHHHHHHTHHHHHHHHTTTHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34556666667766664 333333 3578999999999999999888764
No 32
>2ba2_A D12_ORF131, hypothetical UPF0134 protein MPN010; DUF16, hypothetical protein, coiled-coil, stutter, structural genomics, PSI; 1.80A {Mycoplasma pneumoniae} SCOP: h.1.30.1
Probab=61.31 E-value=4.2 Score=26.91 Aligned_cols=18 Identities=22% Similarity=0.536 Sum_probs=15.6
Q ss_pred HHHHHHHHHHhhhHHHHH
Q 034611 36 DSIVTKIDEMGNRINELE 53 (89)
Q Consensus 36 ~~I~~riDeMg~RIDdLE 53 (89)
.-|+..|..|+.|||.||
T Consensus 67 ~lil~tL~~~nkRLDkle 84 (85)
T 2ba2_A 67 QLILEALQGINKRLDNLE 84 (85)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhccC
Confidence 356889999999999987
No 33
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=60.79 E-value=29 Score=22.05 Aligned_cols=48 Identities=13% Similarity=0.232 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
|+..+|..-+..+-+-...-+...-.|+-.+..||..||+.|.=|=++
T Consensus 20 e~ie~is~~I~~~v~FLN~F~~sce~KLa~ln~kL~~lE~~L~iLEAk 67 (73)
T 3pp5_A 20 EFIEDMSINIQKIVEFLNKFELSTRNKLSDLNEKLTILDRQVDYLEAT 67 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433333332222333445578888888999999988766443
No 34
>3aj1_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule R cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj2_A 3a8e_A
Probab=57.78 E-value=33 Score=24.87 Aligned_cols=48 Identities=25% Similarity=0.440 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHHhhC
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNR------------INELEQSINDLRAEMG 64 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~R------------IDdLEksI~dLm~qaG 64 (89)
+..-||+.|...+.+.... ++.-.-|-.||.| |++||++||-+....+
T Consensus 20 ~~~~Fl~aLa~Ei~~~ag~--ee~~~fL~r~G~rlA~r~PLp~~~Tl~dLE~~iN~vla~~~ 79 (167)
T 3aj1_A 20 DFTLFLQTLSWEIDDQVGI--EVRNELLREVGRGMGTRIMPPPCQTVDKLQIELNALLALIG 79 (167)
T ss_dssp CCHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTTBCCCCCSSHHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHhhCC
Confidence 4678888888888666653 3333446677776 6999999999998775
No 35
>2lme_A Adhesin YADA; trimeric autotransporter, membrane protein, cell adhesion; NMR {Yersinia enterocolitica subsp}
Probab=57.14 E-value=11 Score=24.47 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=15.3
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH
Q 034611 40 TKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm~ 61 (89)
.||+++..|||+|++.+..-..
T Consensus 16 ~~~~~l~~~i~~~~~~~~~g~A 37 (105)
T 2lme_A 16 HKFRQLDNRLDKLDTRVDKGLA 37 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5677777788888777665443
No 36
>1zme_C Proline utilization transcription activator; complex (transcription regulation/DNA), PUT3, Zn2Cys6, binuclear cluster; HET: DNA 5IU; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 1ajy_A
Probab=56.99 E-value=14 Score=21.00 Aligned_cols=21 Identities=19% Similarity=0.378 Sum_probs=16.1
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034611 42 IDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~q 62 (89)
|+.+-.||+.||..|..|...
T Consensus 46 ~~~L~~ri~~Le~~l~~l~~~ 66 (70)
T 1zme_C 46 LQQLQKDLNDKTEENNRLKAL 66 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 667778888888888887654
No 37
>2z9e_A Cellulose synthase operon protein D; alpha and beta fold, octamer, tetramer of dimers, molecule ring, cellulose biosynthesis; 2.50A {Acetobacter xylinus} PDB: 3aj1_A 3aj2_A 3a8e_A 2z9f_A
Probab=56.75 E-value=53 Score=23.76 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh------------HHHHHHHHHHHHHhhC
Q 034611 16 MTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNR------------INELEQSINDLRAEMG 64 (89)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~R------------IDdLEksI~dLm~qaG 64 (89)
-+.|+..|+..|.+.... ++.-.-|-.||.| +++||.+||.+....+
T Consensus 21 W~~FL~aLa~E~~~~ag~--~e~~~fLrrvG~rlA~r~PLp~~~TlaeLE~~iNavla~~~ 79 (167)
T 2z9e_A 21 FTLFLQTLSWEIDDQVGI--EVRNELLREVGRGMGTRIMPPPCQTVDKLQIELNALLALIG 79 (167)
T ss_dssp CHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHTTTBCCCCCSSHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHHHHhCC
Confidence 456777777777666543 3333445666666 6999999999988765
No 38
>3iyn_Q Protein IX, PIX, hexon-associated protein; cryoem, 3D reconstruction, FULL-ATOM model interaction network, capsid protein, hexon protein; 3.60A {Human adenovirus 5}
Probab=56.70 E-value=15 Score=26.06 Aligned_cols=28 Identities=21% Similarity=0.527 Sum_probs=22.6
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 37 SIVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 37 ~I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
.++.+++.++.|+++|-+.+.+|-.|..
T Consensus 102 ~~laqLe~ls~qL~~ls~~v~~L~~q~~ 129 (140)
T 3iyn_Q 102 ALLAQLDSLTRELNVVSQQLLDLRQQVS 129 (140)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888889999999999987743
No 39
>3uul_A Utrophin; spectrin repeat, structural protein, cytoskeletal, helical bundle; 1.95A {Rattus norvegicus} PDB: 3uum_A
Probab=56.15 E-value=30 Score=20.73 Aligned_cols=17 Identities=12% Similarity=0.417 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 034611 20 VQNLLQQMQSRFQTMSD 36 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~ 36 (89)
|+.-|..|..||..+..
T Consensus 83 i~~~l~~l~~rw~~L~~ 99 (118)
T 3uul_A 83 IQEQMTLLNARWEALRV 99 (118)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 40
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli}
Probab=56.00 E-value=43 Score=25.36 Aligned_cols=23 Identities=13% Similarity=0.316 Sum_probs=17.8
Q ss_pred HHHHhhhHHHHHHHHHHHHHhhC
Q 034611 42 IDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~qaG 64 (89)
-..|-+.|+++++++.++..||.
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~ 421 (471)
T 3mq9_A 399 THLLQQELTEAQKGFQDVEAQAA 421 (471)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHhh
Confidence 35577888888888888888764
No 41
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=54.98 E-value=39 Score=21.66 Aligned_cols=20 Identities=25% Similarity=0.461 Sum_probs=13.5
Q ss_pred HHhhhHHHHHHHHHHHHHhh
Q 034611 44 EMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 44 eMg~RIDdLEksI~dLm~qa 63 (89)
+=|.|||+|+..-.+|..++
T Consensus 55 eRGEkLd~L~dkse~L~~~S 74 (96)
T 1sfc_A 55 ERDQKLSELDDRADALQAGA 74 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHHHHHHHHHHH
Confidence 33777777777777776654
No 42
>4a25_A DPS, ferritin DPS family protein; metal binding protein, detoxification process; 2.00A {Kineococcus radiotolerans}
Probab=54.21 E-value=17 Score=24.95 Aligned_cols=29 Identities=10% Similarity=0.310 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINEL 52 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdL 52 (89)
+-++...|+.+-+++...+|+++.||-.|
T Consensus 55 F~~lH~~fee~y~e~~~~~D~iAERI~~L 83 (169)
T 4a25_A 55 WRDLHLQLDTLVEAARGFSDDVAERMRAV 83 (169)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44568889999999999999999999665
No 43
>2cf7_A DPR; peroxide resistance, DPS-family, ferritin-like, ferroxidase, iron-binding; HET: EPE; 1.50A {Streptococcus suis} PDB: 2ux1_A* 2bw1_A* 1umn_A* 2v15_A* 2xjm_A* 2xjn_A* 2xjo_A* 2xkq_A*
Probab=54.15 E-value=34 Score=23.13 Aligned_cols=30 Identities=17% Similarity=0.263 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+..+|..+..+...-+|++..||-.|.
T Consensus 48 f~~lh~~~ee~~~e~~~haD~lAERIl~LG 77 (165)
T 2cf7_A 48 FMIWHPKMDEYMEEIDGYLAEMSERLITLG 77 (165)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 456678889999999999999999997775
No 44
>1jcd_A Major outer membrane lipoprotein; protein folding, coiled coil, helix capping, alanine-zipper, membrane protein; 1.30A {Escherichia coli} SCOP: h.1.16.1 PDB: 1eq7_A 1t8z_A* 2guv_A 2gus_A 1jcc_A 1kfn_A 1kfm_A
Probab=51.98 E-value=27 Score=20.72 Aligned_cols=24 Identities=8% Similarity=0.181 Sum_probs=15.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 38 IVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 38 I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
+-..++.++.+||.|...|+.|..
T Consensus 9 Lss~V~~L~~kVdqLssdV~al~~ 32 (52)
T 1jcd_A 9 ASSDAQTANAKADQASNDANAARS 32 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 335566666677777766666654
No 45
>2l3l_A Tubulin-specific chaperone C; tubulin binding cofactor; NMR {Homo sapiens}
Probab=51.70 E-value=48 Score=21.90 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=17.1
Q ss_pred HHHHHHHhhhHHHHHHHHHH
Q 034611 39 VTKIDEMGNRINELEQSIND 58 (89)
Q Consensus 39 ~~riDeMg~RIDdLEksI~d 58 (89)
...+|++..+|..|++-++|
T Consensus 57 ~~~ld~i~~~I~~Lqk~v~d 76 (111)
T 2l3l_A 57 VERLEEAASRLQGLQKLIND 76 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHH
Confidence 45689999999999998887
No 46
>1hwt_C Protein (heme activator protein); transcription factor, asymmetry, GAL4, complex activator/DNA, gene regulation/DNA complex; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1 PDB: 2hap_C* 1qp9_A* 1pyc_A
Probab=51.33 E-value=5.4 Score=23.54 Aligned_cols=21 Identities=14% Similarity=0.555 Sum_probs=14.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q 034611 40 TKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm 60 (89)
..++.+-.||+.||..|..|-
T Consensus 58 ~~~~~L~~ri~~LE~~l~~l~ 78 (81)
T 1hwt_C 58 NELKKLRERVKSLEKTLSKVH 78 (81)
T ss_dssp HHHHHHHHHHHHHHTTC----
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 567888899999999888774
No 47
>3qne_A Seryl-tRNA synthetase, cytoplasmic; amino acid biosynthesis, CTG-clade, codon ambiguity, pathoge II aminoacyl-tRNA synthetase family; 2.00A {Candida albicans} PDB: 3qo7_A* 3qo8_A* 3qo5_A
Probab=50.62 E-value=79 Score=25.76 Aligned_cols=57 Identities=9% Similarity=0.137 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHH-------------HHHHHHHhhhHHHHHHHHHHHHHh-----hCCCCCCCCCCCCCC
Q 034611 21 QNLLQQMQSRFQTMSDSI-------------VTKIDEMGNRINELEQSINDLRAE-----MGVEGSPSPLTPSKT 77 (89)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I-------------~~riDeMg~RIDdLEksI~dLm~q-----aG~e~~~~~~~~~~~ 77 (89)
+.-+++++.+-..+|.+| +.++.++..+|..||+.+.++-.+ ..+.+.|.+++|.-.
T Consensus 46 ~~~~~~l~~~rn~~sk~i~~~k~~~~~~~~l~~~~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~ 120 (485)
T 3qne_A 46 RFDLDEHNKKLNSVQKEIGKRFKAKEDAKDLIAEKEKLSNEKKEIIEKEAEADKNLRSKINQVGNIVHESVVDSQ 120 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 344677777777788766 345667777887777776665433 247777777776543
No 48
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.06 E-value=41 Score=28.56 Aligned_cols=17 Identities=18% Similarity=0.348 Sum_probs=12.0
Q ss_pred hhHHHHHHHHHHHHHhh
Q 034611 47 NRINELEQSINDLRAEM 63 (89)
Q Consensus 47 ~RIDdLEksI~dLm~qa 63 (89)
++|..|+++|.++..++
T Consensus 131 snIrvLQsnLedq~~kI 147 (562)
T 3ghg_A 131 QHIQLLQKNVRAQLVDM 147 (562)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66777788877776543
No 49
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=49.96 E-value=52 Score=22.12 Aligned_cols=48 Identities=15% Similarity=0.200 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
.|...|...|...-.-|.+-......++-++-.+||.|+..|......
T Consensus 22 ~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~ 69 (227)
T 1t72_A 22 KMAKLVQEAIDKATEALNKQNVELAEEVIKGDDTIDLLEVDIERRCIR 69 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444556667777778899999888776543
No 50
>3f42_A Protein HP0035; helicobacter pylori unknown-function, structural genomics, P protein structure initiative; HET: MSE; 1.78A {Helicobacter pylori}
Probab=49.84 E-value=16 Score=23.89 Aligned_cols=21 Identities=19% Similarity=0.381 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034611 20 VQNLLQQMQSRFQTMSDSIVT 40 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~ 40 (89)
+++|+|+||.+++.+-.++-.
T Consensus 8 m~~lmq~mQ~~m~~~QeeL~~ 28 (99)
T 3f42_A 8 LGGLLDGMKKEFSQLEEKNKD 28 (99)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 466779999999998887763
No 51
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=49.56 E-value=41 Score=25.41 Aligned_cols=31 Identities=10% Similarity=0.210 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 29 SRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 29 ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
.+++.+-..+-.-|+++..-|..|+++|.-|
T Consensus 375 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 405 (463)
T 2xz3_A 375 QRLTSLIHVLEQDQQRLITAINQTHYNLLNV 405 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455666666666777777777777777654
No 52
>2wuj_A Septum site-determining protein diviva; bacterial cell division, septation, cell cycle, sporulation; 1.40A {Bacillus subtilis} PDB: 2wuk_A
Probab=48.64 E-value=24 Score=20.64 Aligned_cols=32 Identities=25% Similarity=0.559 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS 55 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEks 55 (89)
|+..|.++..-+..+ ...+.++-.+|..|+..
T Consensus 25 VD~FLd~v~~~~~~l----~~e~~~L~~~~~~l~~~ 56 (57)
T 2wuj_A 25 VNEFLAQVRKDYEIV----LRKKTELEAKVNELDER 56 (57)
T ss_dssp HHHHHHHHHHHHHHH----HHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhc
Confidence 455555555555443 23344555555555543
No 53
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=47.80 E-value=94 Score=23.96 Aligned_cols=54 Identities=20% Similarity=0.279 Sum_probs=24.8
Q ss_pred CCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHhhhHHHHHHHHHH
Q 034611 4 HDSEDPKQSTADMTVFVQNLLQQMQSRFQTMS----------DSIVTKIDEMGNRINELEQSIND 58 (89)
Q Consensus 4 ~~s~dpkqs~~dLT~~Vq~LLqQmQ~kFqtmS----------~~I~~riDeMg~RIDdLEksI~d 58 (89)
-.+.|-- +...|.+.++..-.--..||..|. .+|-.++.+.-.+|-.||.+|+.
T Consensus 192 ~~stDAV-Nv~QL~~s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~~~~~~~~~~~ 255 (268)
T 2yo3_A 192 VNDTDAV-NYAQLKRSVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSKIYHIENEIAR 255 (268)
T ss_dssp CSTTSBC-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccc-hHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444 556666544444333333443333 23334445555555555555544
No 54
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A*
Probab=47.77 E-value=44 Score=25.22 Aligned_cols=43 Identities=19% Similarity=0.223 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHhhhHHHHHHHHHHHHHhh
Q 034611 21 QNLLQQMQSRFQTMSDSIVTK-IDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I~~r-iDeMg~RIDdLEksI~dLm~qa 63 (89)
+..|++++.+.+.+-.+-..+ +++...-|+.+++||..|-.+.
T Consensus 359 eeal~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 402 (463)
T 2xz3_A 359 DAALAAAQTNAAALSHQRLTSLIHVLEQDQQRLITAINQTHYNL 402 (463)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344666666666544433333 5788888889999998887653
No 55
>2fjc_A Antigen TPF1; mini ferritin, iron binding protein, metal transport; 2.50A {Treponema pallidum} SCOP: a.25.1.1
Probab=47.43 E-value=22 Score=23.65 Aligned_cols=30 Identities=17% Similarity=0.327 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+..+|..+..+...-+|+++.||-.|.
T Consensus 44 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 73 (156)
T 2fjc_A 44 FKQVHELLEEYYVSVTEAFDTIAERLLQLG 73 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 456688899999999999999999997775
No 56
>1n7s_A Vesicle-associated membrane protein 2; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1kil_A 3rk2_A 3rk3_A 3rl0_A 3fii_B 3g94_B
Probab=47.08 E-value=41 Score=19.60 Aligned_cols=22 Identities=23% Similarity=0.406 Sum_probs=13.9
Q ss_pred HHHHhhhHHHHHHHHHHHHHhh
Q 034611 42 IDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~qa 63 (89)
+=+=|.|||+|+..=.+|..++
T Consensus 27 vl~RGekLd~L~~ks~~L~~~s 48 (63)
T 1n7s_A 27 VLERDQKLSELDDRADALQAGA 48 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHHH
Confidence 3344677777777766666654
No 57
>1sz7_A BET3 homolog, trafficking protein particle complex subunit 3; alpha-beta plait, trapp complex, palmitoylated, transport PR; HET: PLM; 1.55A {Homo sapiens} PDB: 2cfh_A* 2pwn_A* 3kxc_A* 1wc8_A* 2j3w_D* 2j3r_A* 2j3t_A* 1wc9_A* 2c0j_A*
Probab=46.97 E-value=25 Score=25.62 Aligned_cols=34 Identities=21% Similarity=0.439 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Q 034611 16 MTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRIN 50 (89)
Q Consensus 16 LT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RID 50 (89)
++-.--.+.+|++.++.. .+.+..||+.||-+|=
T Consensus 28 f~lly~eiV~~~~~~~~~-~~ev~~rLe~mGy~IG 61 (200)
T 1sz7_A 28 FTLTYGALVTQLCKDYEN-DEDVNKQLDKMGFNIG 61 (200)
T ss_dssp HHHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC-HHHHHHHHHHhCHHHh
Confidence 444455788888999987 5668899999998874
No 58
>2chp_A MRGA, metalloregulation DNA-binding stress protein; DNA-binding protein, DPS, dodecameric, ferritin; 2.0A {Bacillus subtilis}
Probab=46.86 E-value=23 Score=23.49 Aligned_cols=43 Identities=9% Similarity=0.371 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhCCC
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQ----SINDLRAEMGVE 66 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEk----sI~dLm~qaG~e 66 (89)
+..+..+|..++.+...-+|+++.||-.|.- ++.++..-+.+.
T Consensus 43 f~~lh~~~ee~~~e~~~~~D~lAERI~~LGg~P~~~~~~~~~~s~i~ 89 (153)
T 2chp_A 43 FFTLHEKFEELYDHAAETVDTIAERLLAIGGQPVATVKEYTEHASIT 89 (153)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHhHCCCC
Confidence 4566888999999999999999999977753 334444444443
No 59
>2gtl_O Extracellular hemoglobin linker L3 subunit; annelid erythrocruorins, respiratory protein, hexagonal bilayer, dihedral D6 symmetry; HET: HEM; 3.50A {Lumbricus terrestris} SCOP: b.61.7.1 g.12.1.1 h.1.32.1
Probab=46.63 E-value=5.5 Score=29.58 Aligned_cols=19 Identities=32% Similarity=0.494 Sum_probs=0.0
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 034611 41 KIDEMGNRINELEQSINDL 59 (89)
Q Consensus 41 riDeMg~RIDdLEksI~dL 59 (89)
|||+++.||+.|+..|..|
T Consensus 6 ~~~~~~~~~~~l~~~~~~l 24 (215)
T 2gtl_O 6 IIDKLIERTNKITTSISHV 24 (215)
T ss_dssp TTSTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHH
No 60
>2bk6_A Non-heme iron-containing ferritin; DPS (DNA binding protein from starved cells), ferroxidase center, mutagenesis study; 2.19A {Listeria innocua} SCOP: a.25.1.1 PDB: 1qgh_A 2bjy_A 2iy4_A 2bkc_A
Probab=46.15 E-value=24 Score=23.41 Aligned_cols=30 Identities=10% Similarity=0.333 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+..+|..++.+...-+|+++.||-.|.
T Consensus 39 f~~lh~~~ee~~~e~~~~~D~lAERI~~Lg 68 (156)
T 2bk6_A 39 FFTLHEKMDDLYSEFGEQMDEVAERLLAIG 68 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 456788999999999999999999997775
No 61
>1l4a_A Synaptobrevin; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=46.04 E-value=33 Score=21.10 Aligned_cols=22 Identities=27% Similarity=0.427 Sum_probs=15.0
Q ss_pred HHHHhhhHHHHHHHHHHHHHhh
Q 034611 42 IDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~qa 63 (89)
+=+=|.|||+|+..-.+|..++
T Consensus 38 vLeRGekLd~L~~kt~~L~~~s 59 (80)
T 1l4a_A 38 VLERDSKISELDDRADALQAGA 59 (80)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHhhhHHHHHHHHHHHHHHHH
Confidence 3344888888888777766554
No 62
>3iq1_A DPS family protein; csgid, SAD, niaid, metal transport, STRU genomics, center for structural genomics of infectious DISE; 1.67A {Vibrio cholerae o1 biovar el tor}
Probab=45.92 E-value=24 Score=23.54 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 54 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEk 54 (89)
+..+..+|....+++...+|++..||-.|.-
T Consensus 49 F~~lH~~~ee~~~~~~~~~D~lAERI~~LGg 79 (159)
T 3iq1_A 49 FFELHAKFEEIYTDLQLKIDELAERILTLSA 79 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4456788899999999999999999987764
No 63
>3uno_A Probable bacterioferritin BFRB; ferroxidase activity, iron storage, oxidoreductase; 2.50A {Mycobacterium tuberculosis} PDB: 3oj5_A 3qd8_A
Probab=45.81 E-value=73 Score=22.15 Aligned_cols=37 Identities=19% Similarity=0.243 Sum_probs=18.7
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCC
Q 034611 37 SIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSPLTPSKT 77 (89)
Q Consensus 37 ~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~~~~~~~~~ 77 (89)
.++++|.-||.-.-.|+.-+.+-++ +....+.+|+..
T Consensus 141 ~~l~~l~~~g~~~~~l~~yL~~~~~----~~~~~~~~~~~~ 177 (189)
T 3uno_A 141 TLVRVADRAGANLFELENFVAREVD----VAPAASGAPHAA 177 (189)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHSC----CCCCCCCCCCCT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhc----CCCCCCCCCccc
Confidence 3445566666554455555544444 334445455544
No 64
>3rmi_A Chorismate mutase protein; emerald biostructures, structural genomics, seattle structur genomics center for infectious disease, ssgcid; 2.40A {Bartonella henselae}
Probab=45.81 E-value=42 Score=21.95 Aligned_cols=30 Identities=17% Similarity=0.398 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 33 TMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 33 tmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
.++...-..|++.=.+||.|-..|-+|+.+
T Consensus 5 ~~~p~~~~~L~~lR~~ID~ID~~il~LL~~ 34 (114)
T 3rmi_A 5 MMQEKILSELAYLRQSIDNFDITLIHILAE 34 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666777777777777777777664
No 65
>1pyi_A Protein (pyrimidine pathway regulator 1); protein-DNA complex, transcription/DNA complex, GAL4, zinc finger, Zn2Cys6, binuclear cluster; HET: DNA; 3.20A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=45.73 E-value=21 Score=21.50 Aligned_cols=19 Identities=5% Similarity=0.172 Sum_probs=14.3
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 034611 41 KIDEMGNRINELEQSINDL 59 (89)
Q Consensus 41 riDeMg~RIDdLEksI~dL 59 (89)
.+..+-.||..||..|..+
T Consensus 49 ~~~~Le~rl~~le~~l~~~ 67 (96)
T 1pyi_A 49 YVFFLEDRLAVMMRVLKEY 67 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4566778899999877765
No 66
>2hn1_A CORA, magnesium and cobalt transporter; integral membrane protein fragment, metal transporter protei divalent cations, metal transport; 2.90A {Archaeoglobus fulgidus}
Probab=45.22 E-value=27 Score=24.59 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=10.9
Q ss_pred HHHHHHHhhhHHHHHHHH
Q 034611 39 VTKIDEMGNRINELEQSI 56 (89)
Q Consensus 39 ~~riDeMg~RIDdLEksI 56 (89)
+.-++.++.+||+||..|
T Consensus 186 ~~~l~~i~~~id~lE~~l 203 (266)
T 2hn1_A 186 FEALLKISDEIEVLEDEV 203 (266)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344566666666666664
No 67
>3ak8_A DNA protection during starvation protein; DPS-like protein, dodecamer, iron-binding protein, metal BIN protein, oxidoreductase; HET: DNA; 1.25A {Salmonella enterica subsp} PDB: 3ak9_A* 1f33_A* 1f30_A* 1dps_A 1jts_A* 1jre_A* 1l8h_A* 1l8i_A* 4dyu_A*
Probab=44.79 E-value=25 Score=23.75 Aligned_cols=30 Identities=13% Similarity=0.319 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+..+|..+..+...-+|+++.||-.|+
T Consensus 59 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 88 (167)
T 3ak8_A 59 FIAVHEMLDGFRTALTDHLDTMAERAVQLG 88 (167)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345578889999999999999999997775
No 68
>2z90_A Starvation-inducible DNA-binding protein or FINE tangled PILI major subunit; quarternary assembly, ferroxidation; 2.40A {Mycobacterium smegmatis str}
Probab=44.30 E-value=26 Score=23.53 Aligned_cols=30 Identities=13% Similarity=0.348 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+..+|..++.+...-+|+++.||-.|.
T Consensus 49 f~~lh~~~ee~~~e~~~~aD~lAERIl~LG 78 (161)
T 2z90_A 49 FRDLHLQLDELVDFAREGSDTIAERMRALD 78 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 445678888999999999999999997764
No 69
>2gr7_A Adhesin; trimeric autotransporter, adhesion, membrane protein, protei secretion, microbial pathogenesis; HET: C8E; 2.30A {Haemophilus influenzae} SCOP: d.24.1.4
Probab=44.27 E-value=58 Score=22.07 Aligned_cols=42 Identities=5% Similarity=0.233 Sum_probs=22.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH----HHHHHHhhCC
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS----INDLRAEMGV 65 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEks----I~dLm~qaG~ 65 (89)
+...|+++.+.+.+ +-.||+.+..|||+++|. |+--+.-+++
T Consensus 23 Ng~QL~~v~~~v~~------------~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~L 68 (129)
T 2gr7_A 23 NGSQLYAVAKGVTN------------LAGQVNNLEGKVNKVGKRADAGTASALAASQL 68 (129)
T ss_dssp ------CHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34566666655532 235667777788888776 4555555555
No 70
>2yjk_A AFP, DPS; metal-binding protein, iron uptake, ferritin fold; 2.00A {Microbacterium arborescens} PDB: 2yjj_A
Probab=44.24 E-value=26 Score=23.46 Aligned_cols=30 Identities=13% Similarity=0.179 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+..+|..++.+...-+|+++.||-.|.
T Consensus 51 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 80 (161)
T 2yjk_A 51 FIAIHELLDSVVAHAQDYADTAAERIVALG 80 (161)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345678899999999999999999997764
No 71
>2d4y_A HAP1, flagellar HOOK-associated protein 1; multi-domain protein, alpha-helical bundle, complex all- beta folds, structural protein; 2.10A {Salmonella typhimurium}
Probab=44.02 E-value=95 Score=24.05 Aligned_cols=40 Identities=13% Similarity=0.261 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
|+++...++.+-..+-..|...-.+|+.|=++|++|-.|.
T Consensus 80 ~n~~~~~L~~~~~~~n~~i~~~V~~iN~l~~qIa~LN~qI 119 (463)
T 2d4y_A 80 FKTTDQYLRDQDKQVNIAIGSSVAQINNYAKQIANLNDQI 119 (463)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666666666777777777777888888887776664
No 72
>4eve_A Neutrophil-activating protein; dodecamer, four-helix bundle, metal transport; 2.10A {Helicobacter pylori} PDB: 4evd_A 3t9j_A 3ta8_A 4evb_A 4evc_A 1ji4_A
Probab=43.36 E-value=32 Score=23.36 Aligned_cols=44 Identities=11% Similarity=0.255 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhCCCC
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQ----SINDLRAEMGVEG 67 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEk----sI~dLm~qaG~e~ 67 (89)
+..+..+|+...+++...+|++..||-.|.- +..++..-+.+.+
T Consensus 53 F~~lH~~~ee~~~e~~~~~D~lAERI~~LGg~P~~t~~~~~~~s~i~e 100 (164)
T 4eve_A 53 FFNVHKATEEIYEEFADMFDDLAERIVQLGHHPLVTLSEAIKLTRVKE 100 (164)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHcCCCc
Confidence 4566788899999999999999999987764 3444544444443
No 73
>4ioe_A Secreted protein ESXB; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.44A {Bacillus anthracis} PDB: 4iog_A
Probab=43.33 E-value=40 Score=19.71 Aligned_cols=17 Identities=0% Similarity=0.133 Sum_probs=7.6
Q ss_pred HHHHHhhhHHHHHHHHH
Q 034611 41 KIDEMGNRINELEQSIN 57 (89)
Q Consensus 41 riDeMg~RIDdLEksI~ 57 (89)
.+..+...|+++.+.+.
T Consensus 64 ~~~~~~~~L~~i~~~L~ 80 (93)
T 4ioe_A 64 AMQQYIPILEGISTDLK 80 (93)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444433
No 74
>2dq0_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: SSA; 2.60A {Pyrococcus horikoshii} PDB: 2dq1_A* 2dq2_A 2zr2_A* 2zr3_A
Probab=43.05 E-value=1.2e+02 Score=23.97 Aligned_cols=58 Identities=19% Similarity=0.349 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHhhhHHHHHHHHHHHHHhh-----CCCCCCCCCCCCCCC
Q 034611 21 QNLLQQMQSRFQTMSDSIV-------------TKIDEMGNRINELEQSINDLRAEM-----GVEGSPSPLTPSKTN 78 (89)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I~-------------~riDeMg~RIDdLEksI~dLm~qa-----G~e~~~~~~~~~~~~ 78 (89)
+.-+++++.+-..+|.+|- .++-+++.+|..||+.+.++-.+. .+.+.|.+++|.-..
T Consensus 44 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vP~g~~ 119 (455)
T 2dq0_A 44 LKEINRLRHERNKIAVEIGKRRKKGEPVDELLAKSREIVKRIGELENEVEELKKKIDYYLWRLPNITHPSVPVGKD 119 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTSCCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCCC
Confidence 3346667777777776664 445667777777777776665543 577888888765543
No 75
>3kwo_A Putative bacterioferritin; alpha-helix, bacterial ferritin fold, structural genomics, center for structural genomics of infectious diseases; 1.99A {Campylobacter jejuni} SCOP: a.25.1.0
Probab=42.93 E-value=34 Score=22.63 Aligned_cols=44 Identities=9% Similarity=0.114 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhCCCC
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQ----SINDLRAEMGVEG 67 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEk----sI~dLm~qaG~e~ 67 (89)
+..+..+|....+++..-+|++..||-.|.- +..++..-+.+.+
T Consensus 36 F~~lH~~~ee~~~~~~~~~D~iAERI~~LGg~P~~t~~~~~~~s~i~e 83 (152)
T 3kwo_A 36 FFSIHEYTEKAYEEMAELFDSCAERVLQLGEKAITCQKVLMENAKSPK 83 (152)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCHHHHHhHCCCCC
Confidence 5567888999999999999999999987764 3344444444433
No 76
>1rtm_1 Mannose-binding protein-A; lectin; 1.80A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1 PDB: 1kwu_A* 1kwv_A* 1kwt_A* 1kwx_A* 1kwy_A* 1kx1_A* 1kww_A 1kwz_A* 1kx0_A* 3kmb_1* 1kmb_1* 2kmb_1* 4kmb_1* 1afb_1* 1afa_1* 1afd_1 1bch_1* 1bcj_1* 1fif_A 1fih_A*
Probab=42.87 E-value=30 Score=21.90 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=19.0
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 38 IVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 38 I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
+..||..|-.+|+.|++.+..|...
T Consensus 2 ~~~~l~~l~~~~~~l~~~l~~l~~~ 26 (149)
T 1rtm_1 2 IEVKLANMEAEINTLKSKLELTNKL 26 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 4567788888888888888777763
No 77
>2c2j_A DNA-binding stress response protein; DNA-binding protein, DPS; 2.05A {Deinococcus radiodurans} PDB: 2c6r_A
Probab=42.74 E-value=26 Score=25.26 Aligned_cols=30 Identities=13% Similarity=0.164 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+..+|..+..+...-+|+++.||-.|+
T Consensus 78 F~~LHe~fee~~~e~~~haD~lAERIl~LG 107 (211)
T 2c2j_A 78 WYTLHELLQDHYEGISKFADDVAERQLSVG 107 (211)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445678899999999999999999997775
No 78
>1ses_A Seryl-tRNA synthetase; ligase; HET: AHX AMP; 2.50A {Thermus thermophilus} SCOP: a.2.7.1 d.104.1.1 PDB: 1ser_A* 1set_A* 1sry_A
Probab=42.72 E-value=1.1e+02 Score=23.80 Aligned_cols=55 Identities=20% Similarity=0.376 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHH-----------HHHHHHHhhhHHHHHHHHHHHHHhh-----CCCCCCCCCCCCC
Q 034611 22 NLLQQMQSRFQTMSDSI-----------VTKIDEMGNRINELEQSINDLRAEM-----GVEGSPSPLTPSK 76 (89)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I-----------~~riDeMg~RIDdLEksI~dLm~qa-----G~e~~~~~~~~~~ 76 (89)
.-+++++.+-..+|.+| +.++-+++.+|..||+.+.++-.+. .+.+.|.+++|.-
T Consensus 42 ~~~~~l~~~~n~~sk~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g 112 (421)
T 1ses_A 42 KRLQEVQTERNQVAKRVPKAPPEEKEALIARGKALGEEAKRLEEALREKEARLEALLLQVPLPPWPGAPVG 112 (421)
T ss_dssp HHHHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCSS
T ss_pred HHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 34556666666666544 5666777788888877776665443 4778888877654
No 79
>2wlu_A DPS-like peroxide resistance protein; DNA-binding, oxidoreductase; 1.94A {Streptococcus pyogenes} PDB: 2wla_A
Probab=42.33 E-value=28 Score=23.78 Aligned_cols=30 Identities=17% Similarity=0.428 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+..+|..++.+...-+|+++.||-.|.
T Consensus 58 f~~lh~~~ee~~~e~~~~aD~lAERIl~LG 87 (175)
T 2wlu_A 58 FLYLHPKMDELLDSLNANLDEVSERLITIG 87 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445678888999999999999999997765
No 80
>3eh0_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N- acyltransferase; LPXD, LEFT-handed parallel beta helix, acyl carrier protein, antibiotic resistance; 2.60A {Escherichia coli}
Probab=42.07 E-value=12 Score=27.84 Aligned_cols=24 Identities=33% Similarity=0.667 Sum_probs=19.5
Q ss_pred HHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 36 DSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 36 ~~I~~riDeMg~RIDdLEksI~dL 59 (89)
...+.|+.+|-.|+.+||+.+..|
T Consensus 317 ~~~~~~l~~~~~~~~~l~~~~~~l 340 (341)
T 3eh0_A 317 AALVMNIDDMSKRLKSLERKVNQQ 340 (341)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHhHHHHHHHHHHHHHHHhhc
Confidence 445688999999999999987643
No 81
>3opc_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, chaperone; HET: MSE; 2.09A {Bordetella pertussis}
Probab=41.70 E-value=72 Score=20.89 Aligned_cols=51 Identities=14% Similarity=0.353 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034611 17 TVFVQNLLQQMQSRFQTMSD--------SIVTKIDEMGNRINELEQSINDLRAEMGVEG 67 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~--------~I~~riDeMg~RIDdLEksI~dLm~qaG~e~ 67 (89)
...++.|+.-|+..++-+.. .|..+.-..-.+|..+|+....++...|+..
T Consensus 17 ~~~l~~L~~lL~~E~~~L~~~~d~~~L~~i~~~K~~ll~~L~~~~~~R~~~l~~lgl~~ 75 (154)
T 3opc_A 17 NALVVEFLHALEAETEALMDRRAHESLQAAVQRKETLADDLAQLGAERDALLSGAGLAS 75 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 44556666777777776655 5566667778889999999999999998763
No 82
>3coq_A Regulatory protein GAL4; helix bundle, protein-DNA complex; HET: DNA; 2.40A {Saccharomyces cerevisiae} SCOP: g.38.1.1 h.1.3.1
Probab=41.32 E-value=26 Score=20.64 Aligned_cols=21 Identities=24% Similarity=0.313 Sum_probs=16.4
Q ss_pred HHHHHhhhHHHHHHHHHHHHH
Q 034611 41 KIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 41 riDeMg~RIDdLEksI~dLm~ 61 (89)
.++.+-.||..||..|..|..
T Consensus 46 ~~~~L~~r~~~le~~l~~l~~ 66 (89)
T 3coq_A 46 HLTEVESRLERLEQLFLLIFP 66 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHcC
Confidence 467777888999988888754
No 83
>2yw6_A DNA protection during starvation protein; DNA-binding protein, quarternary assembly, ferroxidation, oxidoreductase; HET: DNA; 2.53A {Mycobacterium smegmatis} SCOP: a.25.1.1 PDB: 1vei_A 1vel_A 1veq_A 1uvh_A* 2yw7_A
Probab=41.10 E-value=30 Score=23.88 Aligned_cols=30 Identities=17% Similarity=0.234 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+..+|..+..+...-+|+++.||-.|.
T Consensus 47 F~~lh~~~ee~~~e~~~haD~lAERIl~LG 76 (183)
T 2yw6_A 47 FIGVHEMIDPQVELVRGYADEVAERIATLG 76 (183)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345678899999999999999999997765
No 84
>1ji5_A DLP-1; dodecamer, four-helix bundle, metal transport; 2.50A {Bacillus anthracis} SCOP: a.25.1.1
Probab=40.81 E-value=41 Score=21.16 Aligned_cols=31 Identities=23% Similarity=0.434 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQ 54 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEk 54 (89)
+..+..+|...+.+...-+|.+..||-.|.-
T Consensus 32 f~~l~~~~~~~~~ee~~had~laeri~~lGg 62 (142)
T 1ji5_A 32 FFTLHEKFEELYTESATHIDEIAERILAIGG 62 (142)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 4567888899999999999999999987753
No 85
>3pmo_A UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltr; lipid A biosynthesis pathway, transferase; 1.30A {Pseudomonas aeruginosa}
Probab=40.53 E-value=16 Score=27.82 Aligned_cols=23 Identities=22% Similarity=0.598 Sum_probs=17.5
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHH
Q 034611 37 SIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 37 ~I~~riDeMg~RIDdLEksI~dL 59 (89)
..+.|+.+|-.||..|||.+..|
T Consensus 340 ~~~~~l~~~~~~~~~l~k~~~~~ 362 (372)
T 3pmo_A 340 ARIRQLDDMARRLQQLEKRLAAV 362 (372)
T ss_dssp HHHHTHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 45688999999999999998765
No 86
>2bjn_A TPC6, trafficking protein particle complex subunit 6B; trapp complex, tethering, transport protein; 1.7A {Homo sapiens} PDB: 3kxc_C* 2cfh_C*
Probab=40.29 E-value=13 Score=25.78 Aligned_cols=33 Identities=15% Similarity=0.319 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhhH
Q 034611 17 TVFVQNLLQQMQSRFQTMS---DSIVTKIDEMGNRI 49 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS---~~I~~riDeMg~RI 49 (89)
+-..-.+.++++.++.... +.+..||+.||-+|
T Consensus 10 ~~l~~ElV~~~~~~~~~~~~~~~~v~~~Le~mGy~i 45 (160)
T 2bjn_A 10 LLLHNEMVSGVYKSAEQGEVENGRCITKLENMGFRV 45 (160)
T ss_dssp HHHHHHHHHHHHHTCCTTTTTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhhHh
Confidence 3344567788888887765 36889999998776
No 87
>1o9r_A Agrobacterium tumefaciens DPS; iron-binding protein, DNA protection from oxidative damage, DNA-binding, iron- binding protein; 1.45A {Agrobacterium tumefaciens} SCOP: a.25.1.1 PDB: 3ge4_A*
Probab=40.26 E-value=39 Score=22.49 Aligned_cols=30 Identities=13% Similarity=0.259 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+..+|.....+...-+|+++.||-.|.
T Consensus 48 f~~lh~~~ee~~~e~~~~aD~lAERI~~LG 77 (162)
T 1o9r_A 48 FIAVHELLDTFRTQLDNHGDTIAERVVQLG 77 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 345688899999999999999999997775
No 88
>4akv_A Sorting nexin-33; transport protein, organelle biogenesis; 2.65A {Homo sapiens}
Probab=40.21 E-value=76 Score=24.37 Aligned_cols=38 Identities=5% Similarity=0.203 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEM-GNRINELEQSINDLRA 61 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeM-g~RIDdLEksI~dLm~ 61 (89)
+++++.||..||..|..-|+.- ..|+.|+-++|.+.+.
T Consensus 325 ~~e~~~r~e~IS~~~~~El~rF~~~Rv~Dfk~~l~eyle 363 (386)
T 4akv_A 325 ADGIRRRCRVVGFALQAEMNHFHQRRELDFKHMMQNYLR 363 (386)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999888665 7788999888888765
No 89
>2c41_A DPS family DNA-binding stress response protein; iron-binding/oxidation protein, DPS (DNA-binding proteins from starved cells); HET: PG4 PGE; 1.81A {Thermosynechococcus elongatus}
Probab=40.18 E-value=40 Score=22.01 Aligned_cols=30 Identities=20% Similarity=0.405 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+..+|...+.+...-+|++..||-.|.
T Consensus 41 f~~lh~~~~~~~~ee~~had~iaErI~~lG 70 (158)
T 2c41_A 41 FRDLHLLFEEQGSEVFAMIDELAERSLMLD 70 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 455788899999999999999999997663
No 90
>1kmi_Z CHEZ, chemotaxis protein CHEZ; four-helix bundle, signaling protein; HET: BCN; 2.90A {Escherichia coli} SCOP: h.4.11.1
Probab=40.16 E-value=22 Score=25.91 Aligned_cols=34 Identities=21% Similarity=0.358 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCC
Q 034611 31 FQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEG 67 (89)
Q Consensus 31 FqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~ 67 (89)
||.+..|+|.|+=.+ |.++|+.|..|+...|.+.
T Consensus 141 FQDLTGQ~I~KVi~l---v~~vE~~L~~ll~~~~~~~ 174 (214)
T 1kmi_Z 141 FQDLTGQVIKRMMDV---IQEIERQLLMVLLENIPEQ 174 (214)
T ss_dssp HHHHHHHHHHHHHHH---HHHHHHTTTTTTC------
T ss_pred cchHHHHHHHHHHHH---HHHHHHHHHHHHHHhCCcc
Confidence 899999999887655 6689999999988777554
No 91
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=39.97 E-value=1.4e+02 Score=23.82 Aligned_cols=51 Identities=16% Similarity=0.274 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMS-------DSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS-------~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
+....|.....+++++.. ++++- ..+-.+++...++|+.|+..|..|+...
T Consensus 78 ~~e~~tq~skkml~~~~~-~e~~~~~~~~~i~~l~~~~~~~~~~i~~l~~~i~~l~~~~ 135 (409)
T 1m1j_C 78 SIEQLTQKSKKIIEEIIR-YENTILAHENTIQQLTDMHIMNSNKITQLKQKIAQLESHC 135 (409)
T ss_dssp CHHHHHHHHHHHHHHHHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred chhhHHHHHHHHHHHHHH-HHHHhcchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 555667777777776543 33322 2223445566777888888888887643
No 92
>1wle_A Seryl-tRNA synthetase; ligase; HET: SRP; 1.65A {Bos taurus}
Probab=39.92 E-value=1.5e+02 Score=24.03 Aligned_cols=39 Identities=13% Similarity=0.206 Sum_probs=25.7
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhh-----CCCCCCCCCCCCC
Q 034611 38 IVTKIDEMGNRINELEQSINDLRAEM-----GVEGSPSPLTPSK 76 (89)
Q Consensus 38 I~~riDeMg~RIDdLEksI~dLm~qa-----G~e~~~~~~~~~~ 76 (89)
++.++-+++.+|..||+.+.++-.+. .+.+.|.+++|.-
T Consensus 121 l~~~~~~l~~~i~~l~~~~~~~~~~l~~~l~~iPN~~~~~vP~g 164 (501)
T 1wle_A 121 LRARGREIRKQLTLLYPKEAQLEEQFYLRALRLPNQTHPDVPVG 164 (501)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCCCTTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 34445566777777776666665544 5888888887765
No 93
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=39.30 E-value=83 Score=24.38 Aligned_cols=27 Identities=15% Similarity=0.190 Sum_probs=21.1
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhC
Q 034611 38 IVTKIDEMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 38 I~~riDeMg~RIDdLEksI~dLm~qaG 64 (89)
+-..|+.+.++|++|+..|..|+....
T Consensus 31 L~~~l~~~~~~i~~l~~~i~~l~~~~~ 57 (323)
T 1lwu_C 31 LSEMWRVNQQFVTRLQQQLVDIRQTCS 57 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345667788899999999999988643
No 94
>1n1q_A DPS protein; four-helix bundle, unknown function; 2.20A {Brevibacillus brevis} SCOP: a.25.1.1
Probab=39.07 E-value=44 Score=21.39 Aligned_cols=30 Identities=13% Similarity=0.374 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+...|...+.+...-+|.+..||-.|.
T Consensus 39 f~~lh~~~~~~~~ee~~had~laeri~~lG 68 (149)
T 1n1q_A 39 FFTLHEKFEELYTEASGHIDTLAERVLSIG 68 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345678888899999999999999997764
No 95
>1jig_A DLP-2; dodecamer, four-helix bundle, metal transport; 1.46A {Bacillus anthracis} SCOP: a.25.1.1
Probab=39.00 E-value=44 Score=21.22 Aligned_cols=30 Identities=30% Similarity=0.480 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+...|...+.+...-+|.+..||-.|.
T Consensus 36 f~~lh~~~~~~~~ee~~had~laeri~~lG 65 (146)
T 1jig_A 36 FFTLHEKFEEFYNEAGTYIDELAERILALE 65 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 345678888888899999999999987664
No 96
>2yo3_A General control protein GCN4, putative inner MEMB protein, general control protein...; HANS motif, YADA-like head, ylhead; 2.00A {Saccharomyces cerevisiae}
Probab=38.38 E-value=1.3e+02 Score=23.22 Aligned_cols=40 Identities=13% Similarity=0.317 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 23 LLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 23 LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
.+++-....+.--.+|-.+|+...+|+..+|++|.++...
T Consensus 206 s~~~an~yTd~k~~~l~n~I~~V~n~~~q~~~~~~~~~~~ 245 (268)
T 2yo3_A 206 SVEEANTYTDQKMGEMNSKIKGVENKMKQIEDKIEEILSK 245 (268)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455566677777777777778888877653
No 97
>3okg_A Restriction endonuclease S subunits; coiled-coil, type I methyltransferase, DNA binding, DNA BIND protein; 1.95A {Thermoanaerobacter tengcongensis}
Probab=37.88 E-value=77 Score=22.64 Aligned_cols=34 Identities=15% Similarity=0.223 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 28 QSRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 28 Q~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
|.|+-..-+.+..+|+..-+.+..|++.+..|+.
T Consensus 177 Q~~I~~~l~~~~~~i~~~~~~~~~~~~~~~~l~q 210 (412)
T 3okg_A 177 QRRIVAKVEALMERVREVRRLRAEAQKDTELLMQ 210 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556666666666666666666554
No 98
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=37.52 E-value=91 Score=20.87 Aligned_cols=49 Identities=24% Similarity=0.317 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 14 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
..|...|...|...-.-|.+-......++-++-..||.|+..|......
T Consensus 17 ~~M~~~v~~ml~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~i~~~~~~ 65 (217)
T 1xwm_A 17 IEMGRLTEVALQQAIEAFQTQNANLAMAVIDGDGSIDALEEEVNDFALW 65 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455566666666666665555566677777778899999998876554
No 99
>1cnt_1 CNTF, ciliary neurotrophic factor; cytokine, growth factor; 2.40A {Homo sapiens} SCOP: a.26.1.1
Probab=37.52 E-value=49 Score=24.46 Aligned_cols=54 Identities=13% Similarity=0.180 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCC
Q 034611 19 FVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSPL 72 (89)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~~~~ 72 (89)
+.+.++++=|+-|.--+..+...|-.+-.|...|=-+|+.||.-.|.--||.+.
T Consensus 86 hl~~vledqq~~~~P~~~~l~~~L~~~~l~v~~la~~l~~im~~L~~~iPpee~ 139 (187)
T 1cnt_1 86 LLARLLEDQQVHFTPTEGDFHQAIHTLLLQVAAFAYQIEELMILLEYKIPRNEA 139 (187)
T ss_dssp HHHHHHHHHHTTTSSSCSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCSS
T ss_pred HHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCC
Confidence 334444544555544445577889999999999999999999998877665544
No 100
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=37.26 E-value=1.2e+02 Score=23.74 Aligned_cols=57 Identities=21% Similarity=0.411 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHH-------------HHHHHHhhhHHHHHHHHHHHHHhh-----CCCCCCCCCCCCCC
Q 034611 21 QNLLQQMQSRFQTMSDSIV-------------TKIDEMGNRINELEQSINDLRAEM-----GVEGSPSPLTPSKT 77 (89)
Q Consensus 21 q~LLqQmQ~kFqtmS~~I~-------------~riDeMg~RIDdLEksI~dLm~qa-----G~e~~~~~~~~~~~ 77 (89)
+.-+++++.+-..+|.+|- .++-+++.+|.+||+.+.++-.+. .+.+.|.+++|.-.
T Consensus 43 ~~~~~~l~~~~n~~sk~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ipN~~~~~vp~g~ 117 (425)
T 2dq3_A 43 IKRLEALRSERNKLSKEIGKLKREGKDTTEIQNRVKELKEEIDRLEEELRKVEEELKNTLLWIPNLPHPSVPVGE 117 (425)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGSSCSCTTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCCCCTTSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 3446777788888887774 345566667777766666554432 47888888876543
No 101
>4egw_A Magnesium transport protein CORA; magnesium transporter, magnesium binding, metal transp; 2.50A {Methanocaldococcus jannaschii}
Probab=37.15 E-value=33 Score=24.49 Aligned_cols=14 Identities=7% Similarity=0.422 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHH
Q 034611 20 VQNLLQQMQSRFQT 33 (89)
Q Consensus 20 Vq~LLqQmQ~kFqt 33 (89)
+-.||..+-++|-.
T Consensus 158 l~~lld~ivd~y~~ 171 (280)
T 4egw_A 158 LYHILNEITRSYSR 171 (280)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444433
No 102
>2nps_A VAMP-4, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Mus musculus}
Probab=37.09 E-value=68 Score=19.29 Aligned_cols=17 Identities=29% Similarity=0.618 Sum_probs=8.9
Q ss_pred hhhHHHHHHHHHHHHHh
Q 034611 46 GNRINELEQSINDLRAE 62 (89)
Q Consensus 46 g~RIDdLEksI~dLm~q 62 (89)
|.|||+|...-.+|-.+
T Consensus 35 gekLd~L~~ks~~L~~~ 51 (74)
T 2nps_A 35 GERLDELQDKSESLSDN 51 (74)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHH
Confidence 55555555555555443
No 103
>3nvo_A Zinc transport protein ZNTB; alpha-beta-alpha sandwich, zinc efflux system, membrane, TRA protein; 2.30A {Salmonella enterica} PDB: 3nwi_A
Probab=37.02 E-value=21 Score=24.93 Aligned_cols=32 Identities=16% Similarity=0.365 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Q 034611 18 VFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI 56 (89)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI 56 (89)
.++-.||..+-++|-. -++.++.+||+||..|
T Consensus 147 ~ll~~lld~ivd~y~~-------~l~~l~~~id~lE~~l 178 (264)
T 3nvo_A 147 GWLVDVCDALTDHASE-------FIEELHDKIIDLEDNL 178 (264)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHH
Confidence 4555566555555544 4555566666666555
No 104
>3uun_A Dystrophin; triple helical, cell structure and stability, cytoskeletal, structural protein; 2.30A {Homo sapiens}
Probab=36.67 E-value=66 Score=19.02 Aligned_cols=15 Identities=27% Similarity=0.563 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHHH
Q 034611 20 VQNLLQQMQSRFQTM 34 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtm 34 (89)
|+.-|..|..||..+
T Consensus 83 i~~~l~~l~~rw~~L 97 (119)
T 3uun_A 83 VQEQMNLLNSRWECL 97 (119)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444444333
No 105
>1hs7_A Syntaxin VAM3; UP-and-DOWN three-helix bundle insertion preceding proline in AN alpha-helix, endocytosis/exocytosis complex; NMR {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=36.06 E-value=47 Score=21.76 Aligned_cols=26 Identities=12% Similarity=0.304 Sum_probs=19.0
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSI 38 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I 38 (89)
+..|+...++++=.++| .|+.|-.+|
T Consensus 4 ~~~d~~~li~t~s~niq-~l~k~~~ql 29 (97)
T 1hs7_A 4 KTKELSNLIETFAEQSR-VLEKECTKI 29 (97)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHT
T ss_pred ccccHHHHHHHHHHHHH-HHHHHHHHh
Confidence 45688888888888888 777665443
No 106
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=35.85 E-value=81 Score=19.78 Aligned_cols=17 Identities=24% Similarity=0.519 Sum_probs=8.2
Q ss_pred hhhHHHHHHHHHHHHHh
Q 034611 46 GNRINELEQSINDLRAE 62 (89)
Q Consensus 46 g~RIDdLEksI~dLm~q 62 (89)
|.|||+|+..=.+|-.+
T Consensus 32 gekL~~L~~kt~~L~~~ 48 (91)
T 3hd7_A 32 DQKLSELDDRADALQAG 48 (91)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHH
Confidence 44555555544444443
No 107
>1tjo_A Iron-rich DPSA-homolog protein; ferritin, low-iron, metal binding protein; 1.60A {Halobacterium salinarum} SCOP: a.25.1.1 PDB: 1moj_A 1tk6_A 1tko_A 1tkp_A
Probab=35.79 E-value=49 Score=22.48 Aligned_cols=44 Identities=20% Similarity=0.312 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH----HHHHHHHhhCCCC
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQ----SINDLRAEMGVEG 67 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEk----sI~dLm~qaG~e~ 67 (89)
+..+..+|...+.+...-+|++..||-.|.- ++.++..-+.+++
T Consensus 60 f~~lh~~~ee~~~e~~~haD~laERI~~LGg~P~~~~~~~~~~s~i~e 107 (182)
T 1tjo_A 60 FRDLHLFLGEAAETAEEVADELAERVQALGGVPHASPETLQAEASVDV 107 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSHHHHHHHCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHhCCCCC
Confidence 3456788888999999999999999987753 3344444444443
No 108
>1lwu_C Fibrinogen gamma chain; heterotrimer, protein-peptide complex, blood clotting; HET: NDG MAN NAG BMA GAL; 2.80A {Petromyzon marinus} SCOP: d.171.1.1 h.1.8.1 PDB: 1n73_C*
Probab=35.64 E-value=99 Score=23.94 Aligned_cols=17 Identities=6% Similarity=0.272 Sum_probs=10.3
Q ss_pred HHHHHHhhhHHHHHHHH
Q 034611 40 TKIDEMGNRINELEQSI 56 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI 56 (89)
.+|+++...|.+|+..+
T Consensus 40 ~~i~~l~~~i~~l~~~~ 56 (323)
T 1lwu_C 40 QFVTRLQQQLVDIRQTC 56 (323)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 55666666666666543
No 109
>2pyb_A NAPA, neutrophil activating protein; ferritin, DPS, four-helix bundle, metal transport; 2.60A {Borrelia burgdorferi}
Probab=35.25 E-value=22 Score=23.46 Aligned_cols=30 Identities=20% Similarity=0.226 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+..+|..++.+...-+|+++.||-.|.
T Consensus 36 f~~lh~~~ee~~~e~~~~aD~lAERI~~Lg 65 (151)
T 2pyb_A 36 FFVIHKKTQKLYEYIEKIIDIVAERSRMLG 65 (151)
T ss_dssp THHHHHHHHHHHTTTHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 445678888888888899999999986653
No 110
>2bbh_A Divalent cation transport-related protein; transporter, Mg, membrane, structural genomics, structural G consortium, SGC; HET: DMU; 1.85A {Thermotoga maritima} SCOP: d.328.1.1
Probab=35.13 E-value=29 Score=24.32 Aligned_cols=14 Identities=7% Similarity=0.323 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHH
Q 034611 21 QNLLQQMQSRFQTM 34 (89)
Q Consensus 21 q~LLqQmQ~kFqtm 34 (89)
-.||..+-++|-.+
T Consensus 174 ~~lld~ivd~y~~~ 187 (269)
T 2bbh_A 174 YSLIDALVDDYFVL 187 (269)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 45555555555443
No 111
>2xgw_A Peroxide resistance protein; metal binding protein; 2.10A {Streptococcus pyogenes}
Probab=34.95 E-value=42 Score=23.79 Aligned_cols=30 Identities=17% Similarity=0.428 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+..+|..++.+...-+|+++.||--|.
T Consensus 74 F~~LH~~~ee~~~e~~~haD~lAERIl~LG 103 (199)
T 2xgw_A 74 FLYLHPKMDELLDSLNANLDEVSERLITIG 103 (199)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 355678888999999999999999997775
No 112
>1gl2_A Endobrevin; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=34.79 E-value=71 Score=18.79 Aligned_cols=18 Identities=28% Similarity=0.532 Sum_probs=10.5
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 034611 46 GNRINELEQSINDLRAEM 63 (89)
Q Consensus 46 g~RIDdLEksI~dLm~qa 63 (89)
|.|||.|...=.+|..++
T Consensus 36 gekLd~L~~ks~~L~~~s 53 (65)
T 1gl2_A 36 GENLDHLRNKTEDLEATS 53 (65)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 566666666555555443
No 113
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=34.22 E-value=1.1e+02 Score=20.89 Aligned_cols=48 Identities=13% Similarity=0.258 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
.|...|...|...-.-|.+-......++-+.-.+||.|+..|......
T Consensus 18 ~M~~~v~~~l~~a~~al~~~d~~~a~~V~~~d~~iD~l~~~I~~~~~~ 65 (235)
T 1sum_B 18 KAGWFIEKMFRNSISSLVERNESLAREVIADEEVVDQMEVEIQEKAME 65 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 344555555555555554444566677777778899999988876654
No 114
>1t72_A Phosphate transport system protein PHOU homolog; helix bundle, structural genomics, BSGC structure funded by NIH, protein structure initiative; 2.90A {Aquifex aeolicus} SCOP: a.7.12.1 PDB: 1t8b_A
Probab=33.99 E-value=1.1e+02 Score=20.57 Aligned_cols=49 Identities=14% Similarity=0.205 Sum_probs=35.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm 60 (89)
...+|...|...|....+-|.+.......++-.+-.+||.|+..|..-.
T Consensus 122 el~~m~~~v~~ml~~a~~a~~~~d~~~a~~v~~~d~~iD~l~~~i~~~~ 170 (227)
T 1t72_A 122 NINFMSEIVKEMVNDSVISFIQQDTLLAKKVIEKDDTVDELYHQLEREL 170 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456677777788887787876666666777777778888887766543
No 115
>2h8e_A Crossover junction endodeoxyribonuclease RUSA; homologous recombination, DNA repair, resolvase, hydrolase; 1.20A {Escherichia coli} PDB: 2h8c_A 1q8r_A
Probab=33.93 E-value=25 Score=22.62 Aligned_cols=17 Identities=18% Similarity=0.382 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHhhCC
Q 034611 49 INELEQSINDLRAEMGV 65 (89)
Q Consensus 49 IDdLEksI~dLm~qaG~ 65 (89)
||+|.|.|-|-|+.+|+
T Consensus 71 ~DN~~K~~~Dal~~~Gv 87 (120)
T 2h8e_A 71 LDNLQKAAFDALTKAGF 87 (120)
T ss_dssp THHHHHHHHHHHHHHTS
T ss_pred ccchHHHHHHHhcCCCc
Confidence 89999999999999985
No 116
>2c2u_A DPS, DNA-binding stress response protein; DNA-binding protein, iron; 1.1A {Deinococcus radiodurans} PDB: 2c2f_A 2f7n_A
Probab=33.69 E-value=36 Score=24.36 Aligned_cols=30 Identities=20% Similarity=0.410 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+..+|..+..++..-+|++..||-.|.
T Consensus 91 F~~LHe~~ee~~~e~~~haD~lAERIl~LG 120 (207)
T 2c2u_A 91 FRDLHLAYDEFIAEIFPSIDEQAERLVALG 120 (207)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 445678899999999999999999998775
No 117
>1avy_A Fibritin, gpwac M; bacteriophage T4, structural protein, chaperone, bacteriopha assembly, protein folding; 1.85A {Enterobacteria phage T4} SCOP: h.1.17.1
Probab=33.39 E-value=89 Score=20.02 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=22.1
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 37 SIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 37 ~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
.|..+++....||-.||..|+.|-.
T Consensus 19 a~~~ev~t~~~~l~~~e~~vqaL~~ 43 (74)
T 1avy_A 19 SVRQEVNTAKGNISSLQGDVQALQE 43 (74)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhheeeccccchhhhhhhhhHHHHh
Confidence 4667889999999999999999976
No 118
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=33.38 E-value=1.2e+02 Score=21.46 Aligned_cols=37 Identities=11% Similarity=0.161 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 27 MQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 27 mQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
.|.+|...-+.|..+|+..-.+|+.|++-=..||.++
T Consensus 380 eQ~~I~~~l~~ld~~i~~~~~~~~~l~~~k~~Ll~~l 416 (425)
T 1yf2_A 380 EQKQIAKILSSVDKSIELKKQKKEKLQRMKKKIMELL 416 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4667766666777777777778888877777777765
No 119
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=33.04 E-value=75 Score=21.08 Aligned_cols=32 Identities=6% Similarity=0.341 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHH---hhhHHHHHHHHHHHH
Q 034611 29 SRFQTMSDSIVTKIDEM---GNRINELEQSINDLR 60 (89)
Q Consensus 29 ~kFqtmS~~I~~riDeM---g~RIDdLEksI~dLm 60 (89)
.+++.+-..+..++... -.+|.++++.+..|-
T Consensus 19 qql~~~~~~l~~~~~~L~~a~~~~~e~~~~l~~l~ 53 (151)
T 2zdi_C 19 QVLQAQAQILAQNLELLNLAKAEVQTVRETLENLK 53 (151)
T ss_dssp HHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555566667778888 888999999888864
No 120
>3oj5_A Ferritin family protein; ferroxidase, cytosol, oxidoreductase; 2.85A {Mycobacterium tuberculosis} PDB: 3qd8_A
Probab=32.95 E-value=1.1e+02 Score=20.52 Aligned_cols=55 Identities=25% Similarity=0.328 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhCCCCCCCCCCCCCC
Q 034611 18 VFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEMGVEGSPSPLTPSKT 77 (89)
Q Consensus 18 ~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qaG~e~~~~~~~~~~~ 77 (89)
.|++.++.. |.+-..+-..++.+|.-||..+=.+++.++ .+.+... +++.+|+..
T Consensus 123 ~~l~~~l~e-qe~~~~~l~~~l~~l~~~g~~l~~~d~~l~---~~~~~~~-~~~~~~~~~ 177 (189)
T 3oj5_A 123 QFMQWFLQE-QIEEVALMATLVRVADRAGANLFELENFVA---REVDVAP-AASGAPHAA 177 (189)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHHHHHHHHTTCHHHHHHHHH---HHC--------------
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHhCchHhHHHHHHH---HhhCCCC-CCCCCCccc
Confidence 333433433 333444455566666666665555565554 3444444 455555544
No 121
>4i0x_B ESAT-6-like protein MAB_3113; structural genomics, PSI-2, protein structure initiative, in center for structure and function innovation; HET: BME GOL; 1.96A {Mycobacterium abscessus}
Probab=32.87 E-value=86 Score=19.16 Aligned_cols=22 Identities=14% Similarity=0.386 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHhhhHHHH
Q 034611 31 FQTMSDSIVTKIDEMGNRINEL 52 (89)
Q Consensus 31 FqtmS~~I~~riDeMg~RIDdL 52 (89)
+.....+|-..|++|-+.|+.|
T Consensus 23 ~~~~~~~i~~~l~~L~~~v~~L 44 (103)
T 4i0x_B 23 ARGFKEFVTENLDQLESRAQKL 44 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333
No 122
>2oqq_A Transcription factor HY5; homodimer leucine zipper; 2.00A {Arabidopsis thaliana}
Probab=32.83 E-value=74 Score=18.42 Aligned_cols=25 Identities=24% Similarity=0.563 Sum_probs=17.9
Q ss_pred HHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 38 IVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 38 I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
+-.|-.+|-.|..+||.-|+-|-++
T Consensus 8 LE~r~k~le~~naeLEervstLq~E 32 (42)
T 2oqq_A 8 LENRVKDLENKNSELEERLSTLQNE 32 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456677788888888888777554
No 123
>3hnw_A Uncharacterized protein; coiled-coil, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.20A {Eubacterium eligens}
Probab=32.43 E-value=81 Score=21.42 Aligned_cols=51 Identities=18% Similarity=0.371 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHHHHHH--HHHHHHHHH----------------HHHHHHhhhHHHHHHHHHHHHHh
Q 034611 12 STADMTVFVQNLLQQMQSR--FQTMSDSIV----------------TKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~k--FqtmS~~I~----------------~riDeMg~RIDdLEksI~dLm~q 62 (89)
....+..+|+.-+.+|..+ |..++..=+ .+.+.+-..|+++++.|.+|..+
T Consensus 29 ~L~~vA~~vd~km~ei~~~~~~~~l~~~r~aVLaALNiadEl~k~~~~~~~L~~~l~~~~kE~~~lK~e 97 (138)
T 3hnw_A 29 YLQRVASYINNKITEFNKEESYRRMSAELRTDMMYLNIADDYFKAKKMADSLSLDIENKDKEIYDLKHE 97 (138)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5678888899889999844 765443211 23556666666666666666543
No 124
>3dyt_A Sorting nexin-9; 3-helix bundle, BAR domain, PX domain, phosphoprotein, protein transport, SH3 domain, transport, transport protein; 2.08A {Homo sapiens} PDB: 3dyu_A 2raj_A 2rai_A 2rak_A*
Probab=32.21 E-value=1.3e+02 Score=22.74 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEM-GNRINELEQSINDLRA 61 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeM-g~RIDdLEksI~dLm~ 61 (89)
+++.+.||..||..+..-|+-- ..|+.|+-++|.+...
T Consensus 305 ~~~~~~r~e~is~~~~~El~rF~~~r~~Dfk~~l~~yl~ 343 (366)
T 3dyt_A 305 KQNMVKRVSIMSYALQAEMNHFHSNRIYDYNSVIRLYLE 343 (366)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778899999999998777554 6678888888877664
No 125
>2d5k_A DPS, DPS family protein; four helix bundle, metal binding protein; 1.85A {Staphylococcus aureus subsp}
Probab=31.57 E-value=66 Score=21.00 Aligned_cols=30 Identities=17% Similarity=0.397 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
+..+...|...+.+...-+|.+..||-.|.
T Consensus 38 f~~lh~~~~~~~~ee~~had~iaERI~~lG 67 (156)
T 2d5k_A 38 FFSLHVKFEELYNEASQYVDELAERILAVG 67 (156)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 344577888888888888999999987764
No 126
>3rrk_A V-type ATPase 116 kDa subunit; alpha beta fold, proton pump, subunit I/A, V-ATPase, proton; HET: NHE; 2.64A {Meiothermus ruber}
Probab=31.07 E-value=1e+02 Score=22.63 Aligned_cols=23 Identities=17% Similarity=0.177 Sum_probs=10.4
Q ss_pred HHHHHHhhhHHHHHHH---HHHHHHh
Q 034611 40 TKIDEMGNRINELEQS---INDLRAE 62 (89)
Q Consensus 40 ~riDeMg~RIDdLEks---I~dLm~q 62 (89)
.|+.++-.+|+.|+.. +..|.-.
T Consensus 113 ~~~~~L~~~~~~l~~~~~~l~~L~p~ 138 (357)
T 3rrk_A 113 KERAALEEEIQTIELFGKAAEKLAAL 138 (357)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHhhh
Confidence 3344444444444444 4444433
No 127
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=30.86 E-value=1.1e+02 Score=19.60 Aligned_cols=45 Identities=13% Similarity=0.221 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034611 14 ADMTVFVQNLLQQMQSRFQ--------TMSDSIVTKIDEMGNRINELEQSIND 58 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFq--------tmS~~I~~riDeMg~RIDdLEksI~d 58 (89)
.++-.=|+.=|++++..|. .....|..-+.++.--|+||+++|.-
T Consensus 9 ~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i 61 (95)
T 2c5k_T 9 QQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIV 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566666777776663 23345555566666666677776654
No 128
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=30.41 E-value=1.2e+02 Score=20.16 Aligned_cols=49 Identities=12% Similarity=0.099 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
.|...|...|...-.-|.+-......++-+.-.+||.|+..|.......
T Consensus 18 ~M~~~v~~~l~~a~~al~~~d~~~a~~v~~~d~~iD~l~~~I~~~~~~l 66 (216)
T 2i0m_A 18 GLGQLVLETASKALLALASKDKEMAELIINKDHAINQGQSAIELTCARL 66 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3444455555554444544445666777777788999999998887764
No 129
>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1
Probab=30.18 E-value=1.1e+02 Score=19.59 Aligned_cols=33 Identities=21% Similarity=0.299 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 29 SRFQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 29 ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
.+++.+-..+..++...-..|.++++.+..|-.
T Consensus 11 q~l~~~~~~l~~~~~~l~~~i~e~~~~~e~l~~ 43 (133)
T 1fxk_C 11 NIYQSQVELIQQQMEAVRATISELEILEKTLSD 43 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345556666667777777788888888777655
No 130
>1fzc_B Fibrin; blood coagulation, plasma protein, crosslinking; HET: NAG MAN; 2.30A {Homo sapiens} SCOP: d.171.1.1 h.1.8.1 PDB: 1fzb_B* 1fza_B* 1fze_B* 1fzf_B* 1fzg_B* 1n86_B* 1n8e_B 2h43_B* 2hlo_B* 2hod_B* 2hpc_B* 2q9i_B* 2xnx_B 2xny_B 3e1i_B* 2z4e_B* 2oyh_B* 1ltj_B* 1rf0_B* 1lt9_B* ...
Probab=30.12 E-value=15 Score=28.49 Aligned_cols=25 Identities=12% Similarity=0.271 Sum_probs=20.3
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 39 VTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 39 ~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
-..++.+-.||..||..|..++...
T Consensus 36 q~~le~l~~KIq~Le~~v~~~~~~~ 60 (328)
T 1fzc_B 36 RSILENLRSKIQKLESDVSAQMEYC 60 (328)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3457788999999999999888764
No 131
>3lt7_A Adhesin YADA; adhesion, coiled coil, trimeric autotransporter, cell adhesi membrane, cell outer membrane, membrane, plasmid, virulence; 1.50A {Yersinia enterocolitica} PDB: 3lt6_A* 3h7z_A 3h7x_A
Probab=29.89 E-value=95 Score=19.27 Aligned_cols=21 Identities=29% Similarity=0.536 Sum_probs=14.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q 034611 40 TKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm 60 (89)
.|+..+..+||.+++-.+.-+
T Consensus 34 ~KF~qL~nKi~k~~kr~~aGi 54 (64)
T 3lt7_A 34 HKFHQLENRLDKLEKRLLKLL 54 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHhhhH
Confidence 455666678888888765443
No 132
>3b5n_A Synaptobrevin homolog 1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=29.70 E-value=85 Score=18.15 Aligned_cols=18 Identities=22% Similarity=0.551 Sum_probs=10.0
Q ss_pred hhhHHHHHHHHHHHHHhh
Q 034611 46 GNRINELEQSINDLRAEM 63 (89)
Q Consensus 46 g~RIDdLEksI~dLm~qa 63 (89)
|.|||.|...=.+|..++
T Consensus 29 gekLd~L~~ks~~L~~~s 46 (61)
T 3b5n_A 29 GERLTSIEDKADNLAVSA 46 (61)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHH
Confidence 556666665555555443
No 133
>2ovc_A Potassium voltage-gated channel subfamily KQT MEM; potassium channel, ION channel assemb coiled-coil, tetramer, transport protein; 2.07A {Homo sapiens}
Probab=29.67 E-value=39 Score=18.50 Aligned_cols=13 Identities=23% Similarity=0.485 Sum_probs=5.6
Q ss_pred HhhhHHHHHHHHH
Q 034611 45 MGNRINELEQSIN 57 (89)
Q Consensus 45 Mg~RIDdLEksI~ 57 (89)
|+.|+--+|+.+.
T Consensus 8 m~~Rl~kVE~qv~ 20 (33)
T 2ovc_A 8 MMGRVVKVEKQVQ 20 (33)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444443
No 134
>3pp5_A BRK1, protein brick1; triple coiled-coil, precursor of the SCAR-WAVE complex, ABI, structural protein; 1.50A {Dictyostelium discoideum}
Probab=29.01 E-value=1.1e+02 Score=19.29 Aligned_cols=40 Identities=10% Similarity=0.341 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034611 15 DMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 58 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~d 58 (89)
-++.|+...=.....|+..+. .||....++|+=||..+.-
T Consensus 31 ~~v~FLN~F~~sce~KLa~ln----~kL~~lE~~L~iLEAklsS 70 (73)
T 3pp5_A 31 KIVEFLNKFELSTRNKLSDLN----EKLTILDRQVDYLEATFKT 70 (73)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhc
Confidence 344555555555556665544 6778889999999988763
No 135
>2nrj_A HBL B protein; enterotoxin, hemolysis, transmembrane, structural genomics, PSI-2, protein structure initiative; 2.03A {Bacillus cereus} SCOP: h.4.4.2
Probab=28.84 E-value=1.6e+02 Score=22.39 Aligned_cols=32 Identities=6% Similarity=0.282 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 31 FQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 31 FqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
|.+...++...+..-+.-|.+|++.|..+-.+
T Consensus 160 f~~~~~~l~~~L~~~~~~I~~Lq~eI~~l~~~ 191 (346)
T 2nrj_A 160 FGSNKELLQSILKNQGADVDADQKRLEEVLGS 191 (346)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHTGG
T ss_pred HHhHHHHHHHHHhcccccHHHHHHHHHHHHHH
Confidence 55556666666665666677777777766554
No 136
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=28.80 E-value=1.7e+02 Score=21.36 Aligned_cols=32 Identities=22% Similarity=0.251 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH-HhhCC
Q 034611 34 MSDSIVTKIDEMGNRINELEQSINDLR-AEMGV 65 (89)
Q Consensus 34 mS~~I~~riDeMg~RIDdLEksI~dLm-~qaG~ 65 (89)
.-+.|+.+|-++-.||..+|+.|..|. ..+|+
T Consensus 156 ~id~Lv~~lr~~~~~ir~~Er~i~~l~v~~~~m 188 (339)
T 1sig_A 156 QFDYLVNSMRVMMDRVRTQERLIMKLCVEQCKM 188 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345666778888999999999999998 44554
No 137
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=28.76 E-value=76 Score=20.18 Aligned_cols=26 Identities=15% Similarity=0.312 Sum_probs=13.9
Q ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHHH
Q 034611 1 MDGHDSEDPKQSTADMTVFVQNLLQQM 27 (89)
Q Consensus 1 ~~~~~s~dpkqs~~dLT~~Vq~LLqQm 27 (89)
||+.- ++.+-.+.++...++..|++.
T Consensus 1 ~~~~~-~~~~F~~~~v~~ii~~~l~~~ 26 (111)
T 1ygt_A 1 MDDSR-EESQFIVDDVSKTIKEAIETT 26 (111)
T ss_dssp --------CCCCCCHHHHHHHHHHHHH
T ss_pred CCCcc-cCCCCCHHHHHHHHHHHHHHh
Confidence 44432 333447788888888888753
No 138
>3r2v_A PB2 C-terminal subunit; structural genomics, seattle structural genomics center for infectious disease, ssgcid, polymerase BASI H3N2, H1N1; 1.30A {Influenza a virus} PDB: 2vy6_A 3cw4_A 3l56_A 3kc6_A 3khw_A 2gmo_A 2jdq_D
Probab=28.58 E-value=49 Score=24.72 Aligned_cols=33 Identities=30% Similarity=0.455 Sum_probs=23.7
Q ss_pred CCCcCCHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Q 034611 7 EDPKQSTADMTVFVQNLLQQMQSRFQTM-SDSIV 39 (89)
Q Consensus 7 ~dpkqs~~dLT~~Vq~LLqQmQ~kFqtm-S~~I~ 39 (89)
--||-....-..||.+|+|||.+-..+| ..|||
T Consensus 46 lvPka~r~qYSGFvRtlfqQMRDvlgtf~T~QiI 79 (216)
T 3r2v_A 46 LVPKAIRSQYSGFVRTLFQQMRDVLGTFDTTQII 79 (216)
T ss_dssp TSCTTTHHHHHHHHHHHHHHHHHSTTCCCHHHHH
T ss_pred hchHHHhhhhhHHHHHHHHHHHHHHccchhhhhh
Confidence 3467677788999999999999844433 14554
No 139
>1x8y_A Lamin A/C; structural protein, intermediate filament protein; 2.20A {Homo sapiens} SCOP: h.1.20.1 PDB: 3v5b_A 3v4w_A 3v4q_A
Probab=27.90 E-value=1.1e+02 Score=18.99 Aligned_cols=36 Identities=17% Similarity=0.316 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
.++-|..+..+|.. .+.++...|..||..+..+...
T Consensus 15 Le~~l~e~E~~~~~-------~l~~~q~~i~~lE~el~~~r~e 50 (86)
T 1x8y_A 15 KEAKLRDLEDSLAR-------ERDTSRRLLAEKEREMAEMRAR 50 (86)
T ss_dssp HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666666643 4555556666666666655443
No 140
>1xwm_A PHOU, phosphate uptake regulator; negative phosphate uptake regulator, structural genomics, protein structure initiative, PSI; 2.50A {Geobacillus stearothermophilus} SCOP: a.7.12.1
Probab=27.90 E-value=1.3e+02 Score=20.07 Aligned_cols=48 Identities=13% Similarity=0.207 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034611 13 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm 60 (89)
..+|...|...|...-+-|.+.......++-.+-.+||+|++.+..-.
T Consensus 119 l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~~~~~~ 166 (217)
T 1xwm_A 119 LVLMYRLATDMVSTAIAAYDREDASLAAQIADMDHRVDEQYGEMMASL 166 (217)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666677777777777776655566677777778888888776543
No 141
>3lss_A Seryl-tRNA synthetase; aminoacyl-tRNA synthetase, tRNA ligase, AARS, serrs, translation, ATP-binding, nucleotide-binding, structural genomics; HET: ATP; 1.95A {Trypanosoma brucei} PDB: 3lsq_A*
Probab=27.73 E-value=2.4e+02 Score=22.82 Aligned_cols=36 Identities=14% Similarity=0.275 Sum_probs=19.5
Q ss_pred HHHHhhhHHHHHHHHHHHHHh-----hCCCCCCCCCCCCCC
Q 034611 42 IDEMGNRINELEQSINDLRAE-----MGVEGSPSPLTPSKT 77 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~q-----aG~e~~~~~~~~~~~ 77 (89)
+-++..+|..||+.+.++-.+ ..+.+.|.+++|.-.
T Consensus 113 ~~~l~~~i~~le~~~~~~~~~~~~~l~~iPN~~~~~vP~g~ 153 (484)
T 3lss_A 113 SKDLSDQVAGLAKEAQQLEEERDKLMLNVGNILHESVPIAQ 153 (484)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCTTSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccCCCCC
Confidence 334455555555554444332 247777877776543
No 142
>2vxx_A Starvation induced DNA binding protein; stress response protein, DPS, oxidation, iron binding, ferroxidase centre; HET: PG4; 2.40A {Synechococcus elongatus}
Probab=27.55 E-value=81 Score=21.35 Aligned_cols=30 Identities=20% Similarity=0.419 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHH
Q 034611 25 QQMQSRFQTMSDSIVTKIDEMGNRINELEQ 54 (89)
Q Consensus 25 qQmQ~kFqtmS~~I~~riDeMg~RIDdLEk 54 (89)
..+..+|...+.+...-+|.+..||-.|.-
T Consensus 60 ~~lh~~~~~~~~ee~~had~laErI~~LGg 89 (192)
T 2vxx_A 60 YPLHQFFQDCYEQVQDHVHALGERLNGLGG 89 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345667777778888888888888877653
No 143
>3emo_C HIA (adhesin); transmembrane, outer membrane, trimeric autotransporter, membrane protein/cell adhesion complex; 3.00A {Haemophilus influenzae}
Probab=27.40 E-value=1.6e+02 Score=20.60 Aligned_cols=48 Identities=8% Similarity=0.239 Sum_probs=28.9
Q ss_pred CCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH----HHHHHhhCC
Q 034611 5 DSEDPKQSTADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSI----NDLRAEMGV 65 (89)
Q Consensus 5 ~s~dpkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI----~dLm~qaG~ 65 (89)
.+.|-- +...|-...+.+- .+-.||+.+..||+++++.. +--+.-+++
T Consensus 50 ~~tDAv-N~~Ql~~~~~~v~------------n~~~~in~L~~~I~~~~k~a~aGiA~A~A~A~L 101 (162)
T 3emo_C 50 TSTDAI-NGSQLYAVAKGVT------------NLAGQVNNLEGKVNKVGKRADAGTASALAASQL 101 (162)
T ss_dssp TCCCBC-BHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCccc-cHHHHhhhhhhhh------------hhHHHHHHHHhhhhhhHHhHHHHHHHHHHhccC
Confidence 444544 5666666555431 23457777788888888775 444555555
No 144
>3p8c_E Probable protein brick1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=27.37 E-value=1.2e+02 Score=19.20 Aligned_cols=37 Identities=22% Similarity=0.411 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034611 17 TVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIN 57 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~ 57 (89)
+.|+.+.=.....||.++. .||...-++|+=||+.++
T Consensus 33 v~FLN~F~~sce~KLa~ln----~KL~~LEr~L~iLEAkls 69 (75)
T 3p8c_E 33 ADFLNSFDMSCRSRLATLN----EKLTALERRIEYIEARVT 69 (75)
T ss_dssp HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHh
Confidence 3344443344455555444 677888899999998764
No 145
>1huw_A Human growth hormone; 2.00A {Homo sapiens} SCOP: a.26.1.1 PDB: 1kf9_A 1hwg_A 3hhr_A 1a22_A 1bp3_A 1hwh_A 1axi_A 1hgu_A 1z7c_A
Probab=27.36 E-value=36 Score=24.22 Aligned_cols=53 Identities=17% Similarity=0.223 Sum_probs=38.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHH-HHhhhHHHHHHHHHHHHHhhC
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIV-----TKID-EMGNRINELEQSINDLRAEMG 64 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~-----~riD-eMg~RIDdLEksI~dLm~qaG 64 (89)
+..+|-.++-.||+-..+=.+.++..+. +.=| +|.+++.+||..|..|+.+..
T Consensus 71 s~~~LL~~~l~Ll~SW~~PL~~L~~~l~~~~~~~~~~~~i~~k~k~Leegi~~l~~~~~ 129 (191)
T 1huw_A 71 SNLELLRISLLLIQSWLEPVQFLRSVFANSLVYGASDSNVYDLLKDLEEGIQTLMGRLE 129 (191)
T ss_dssp CHHHHHHHHHHHHHTTTTGGGGGHHHHHHCCSTTTTTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 5678888888887766555555555542 3335 788889999999999998875
No 146
>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B
Probab=26.82 E-value=1.1e+02 Score=18.57 Aligned_cols=22 Identities=0% Similarity=0.202 Sum_probs=11.9
Q ss_pred HHHHHHhhhHHHHHHHHHHHHH
Q 034611 40 TKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm~ 61 (89)
.+|..+..+++.|++.+.+|..
T Consensus 79 ~~i~~le~~~~~~~~~l~~lk~ 100 (107)
T 1fxk_A 79 LREKTIERQEERVMKKLQEMQV 100 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555544
No 147
>3mtu_E Head morphogenesis protein, tropomyosin alpha-1 C; tropomysoin, overlap complex, coiled-coils, contractIle PROT; HET: MSE; 2.10A {Bacillus phage PHI29}
Probab=26.80 E-value=86 Score=20.11 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHH
Q 034611 22 NLLQQMQSRFQTMS 35 (89)
Q Consensus 22 ~LLqQmQ~kFqtmS 35 (89)
.+|||+...+-++-
T Consensus 30 ~~~~~~~~~~~~~E 43 (77)
T 3mtu_E 30 EALQQLRVNYGSFV 43 (77)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 46778777775543
No 148
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=26.59 E-value=1.2e+02 Score=18.81 Aligned_cols=17 Identities=12% Similarity=-0.052 Sum_probs=8.3
Q ss_pred hhhHHHHHHHHHHHHHh
Q 034611 46 GNRINELEQSINDLRAE 62 (89)
Q Consensus 46 g~RIDdLEksI~dLm~q 62 (89)
...||.|.+.+.-|..+
T Consensus 41 q~~Id~L~~ql~~L~~r 57 (78)
T 3efg_A 41 RLTGARNAELIRHLLED 57 (78)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455555555555444
No 149
>3g67_A Methyl-accepting chemotaxis protein; four-helix bundle, signaling protein; 2.17A {Thermotoga maritima} PDB: 3g6b_A 3ur1_C
Probab=26.48 E-value=1.8e+02 Score=20.84 Aligned_cols=10 Identities=20% Similarity=0.501 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 034611 15 DMTVFVQNLL 24 (89)
Q Consensus 15 dLT~~Vq~LL 24 (89)
+|...++.++
T Consensus 11 em~~~i~~i~ 20 (213)
T 3g67_A 11 NLNRLFQELV 20 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333343333
No 150
>2w83_C C-JUN-amino-terminal kinase-interacting protein 4; golgi apparatus, protein transport, ER-golgi transport, ARF, GTPase, effector, myristate; HET: GTP; 1.93A {Homo sapiens}
Probab=26.37 E-value=1.3e+02 Score=19.29 Aligned_cols=47 Identities=17% Similarity=0.319 Sum_probs=33.9
Q ss_pred CHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034611 12 STADMTVFVQNLLQ------QMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 58 (89)
Q Consensus 12 s~~dLT~~Vq~LLq------QmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~d 58 (89)
++..|..-|++|+. ..++....+-+.+|.|+|++++.-.-|--.+..
T Consensus 3 ~~~gmgkevEnLi~EN~eLl~TKNaLnvvk~DLI~rvdELt~E~e~l~~El~s 55 (77)
T 2w83_C 3 DPEFMGREVENLILENTQLLETKNALNIVKNDLIAKVDELTCEKDVLQGELEA 55 (77)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 45667777777754 356667788999999999999876665444433
No 151
>1ydx_A Type I restriction enzyme specificity protein Mg4; type-I HSDS, DNA binding protein; 2.30A {Mycoplasma genitalium} SCOP: d.287.1.2 d.287.1.2
Probab=26.23 E-value=1.8e+02 Score=20.98 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 27 MQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 27 mQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
.|.+|...-+.|..+|+..-..|+.|++--..||.++
T Consensus 356 eQ~~I~~~l~~id~~i~~~~~~i~~L~~lk~~LL~~l 392 (406)
T 1ydx_A 356 LQRKAGKIVFLLDQKLDQYKKELSSLTVIRDTLLKKL 392 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555655556667777777778888888777888776
No 152
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=26.00 E-value=2.7e+02 Score=22.69 Aligned_cols=25 Identities=24% Similarity=0.321 Sum_probs=20.4
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 39 VTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 39 ~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
...++.+-.+|..||..|..++...
T Consensus 174 ~~~~~~l~~ki~~l~~~~~~~~~~~ 198 (464)
T 1m1j_B 174 RAVIDSLHKKIQKLENAIATQTDYC 198 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3557888999999999999888753
No 153
>3cue_B Transport protein particle 31 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=25.76 E-value=63 Score=24.97 Aligned_cols=35 Identities=23% Similarity=0.474 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Q 034611 14 ADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRI 49 (89)
Q Consensus 14 ~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RI 49 (89)
.-++-....+.++++.++.+.+ ++..||+.||-+|
T Consensus 60 s~fafLf~EmV~~~~~~~~~~~-e~e~rLe~mGy~I 94 (283)
T 3cue_B 60 SAMAFLFQEMISQLHRTCKTAG-DFETKLSDYGHNI 94 (283)
T ss_dssp HHHHHHHHHHHHHHHHHCSSHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCchH-HHHHHHHHhhhhh
Confidence 4455566788889999888865 4788999988765
No 154
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=25.67 E-value=89 Score=17.07 Aligned_cols=10 Identities=30% Similarity=0.830 Sum_probs=4.7
Q ss_pred hhHHHHHHHH
Q 034611 47 NRINELEQSI 56 (89)
Q Consensus 47 ~RIDdLEksI 56 (89)
.|+|-||..+
T Consensus 20 ~r~drle~tv 29 (32)
T 2akf_A 20 ERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3455555443
No 155
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=24.98 E-value=1.9e+02 Score=20.57 Aligned_cols=47 Identities=15% Similarity=0.349 Sum_probs=24.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSIND 58 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~d 58 (89)
.-.+--+|+-.-|-..-..-.+++..++.-+|-=...|..+|.+|+-
T Consensus 47 aleeTK~Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~ 93 (159)
T 3p8c_F 47 ALEETKAYTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINH 93 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455444444444445556666665555555555555555553
No 156
>1sum_B Phosphate transport system protein PHOU homolog 2; ABC transport, PST, structural genomics, berkeley STRU genomics center, BSGC; 2.00A {Thermotoga maritima} SCOP: a.7.12.1
Probab=24.96 E-value=1.4e+02 Score=20.32 Aligned_cols=48 Identities=10% Similarity=0.195 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
...+|...|...|...-+-|.+.......++-.+-.+||+|++.+..-
T Consensus 118 ~l~~m~~~v~~~l~~a~~a~~~~d~~~A~~v~~~d~~iD~l~~~l~~~ 165 (235)
T 1sum_B 118 DIPAMANQTSEMLKFALRMFADVNVEKSFEVCRMDSKVDDLYEKVREE 165 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSCCHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777887777787666666666777777888887766543
No 157
>2y7c_A Type-1 restriction enzyme ecoki specificity prote; transferase; 18.00A {Escherichia coli} PDB: 2y7h_A*
Probab=24.90 E-value=96 Score=22.41 Aligned_cols=18 Identities=17% Similarity=0.414 Sum_probs=7.6
Q ss_pred HHHHHHHHhhhHHHHHHH
Q 034611 38 IVTKIDEMGNRINELEQS 55 (89)
Q Consensus 38 I~~riDeMg~RIDdLEks 55 (89)
|..+|+..-..||.|++.
T Consensus 381 Iv~~l~~~~~~id~l~~~ 398 (464)
T 2y7c_A 381 IVRRVEQLFAYADTIEKQ 398 (464)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444444433
No 158
>1yf2_A Type I restriction-modification enzyme, S subunit; structura genomics, PSI, protein structure initiative; 2.40A {Methanocaldococcus jannaschii} SCOP: d.287.1.2 d.287.1.2
Probab=24.90 E-value=1.8e+02 Score=20.55 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 28 QSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 28 Q~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
|.|+-..-+.|-.+|+.--+.|+.|++--..||.++
T Consensus 171 Q~~I~~~l~~ld~~i~~~~~~i~~l~~~k~~l~~~~ 206 (425)
T 1yf2_A 171 QKQIAKILTKIDEGIEIIEKSINKLERIKKGLMHKL 206 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555555555566666666666667766666666554
No 159
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=24.74 E-value=68 Score=23.96 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 034611 19 FVQNLLQQMQSRFQTMSDSIVTKID 43 (89)
Q Consensus 19 ~Vq~LLqQmQ~kFqtmS~~I~~riD 43 (89)
++..||..+-++|-.+-+.|-.++|
T Consensus 181 ll~~lld~ivd~y~~~l~~l~~~id 205 (363)
T 2iub_A 181 LLYSLIDALVDDYFVLLEKIDDEID 205 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555444444443333
No 160
>1gs9_A Apolipoprotein E, APOE4; lipid transport, heparin-binding, plasma, lipid binding protein; 1.7A {Homo sapiens} SCOP: a.24.1.1 PDB: 1or3_A 1or2_A 1le4_A 1bz4_A 1lpe_A 1le2_A
Probab=24.66 E-value=52 Score=22.88 Aligned_cols=16 Identities=25% Similarity=0.331 Sum_probs=7.0
Q ss_pred HHHHHHHHhhhHHHHH
Q 034611 38 IVTKIDEMGNRINELE 53 (89)
Q Consensus 38 I~~riDeMg~RIDdLE 53 (89)
|-..+|+++..+++|.
T Consensus 64 l~~~ld~l~~~~~~l~ 79 (165)
T 1gs9_A 64 MDETMKELKAYKSELE 79 (165)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3344444444444443
No 161
>1bgf_A STAT-4; transcription factor, regulation, DNA-binding; 1.45A {Mus musculus} SCOP: a.90.1.1
Probab=24.55 E-value=80 Score=21.25 Aligned_cols=24 Identities=29% Similarity=0.445 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 034611 13 TADMTVFVQNLLQQMQSRFQTMSD 36 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~ 36 (89)
-..-+.++++||++|+.+...++.
T Consensus 51 e~~A~~l~~~Ll~eL~~~~~~~~~ 74 (124)
T 1bgf_A 51 ETMATILLQNLLIQLDEQLGRVSK 74 (124)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC
Confidence 345578999999999999876543
No 162
>2yko_A LINE-1 ORF1P; RNA-binding protein, genome evolution, nucleic acid chaperon coiled-coil; HET: MSE; 2.10A {Homo sapiens} PDB: 2ykp_A 2ykq_A 2ldy_A
Probab=24.49 E-value=33 Score=25.91 Aligned_cols=25 Identities=24% Similarity=0.574 Sum_probs=19.0
Q ss_pred HHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 37 SIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 37 ~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
.+-+|+|++..||++||..+.++..
T Consensus 3 ~lnsRvd~~EErIs~le~rleei~q 27 (233)
T 2yko_A 3 SLRSRCDQLEERVSAAEDEINEIKR 27 (233)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999988764
No 163
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=24.05 E-value=1.1e+02 Score=19.67 Aligned_cols=31 Identities=16% Similarity=0.378 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Q 034611 31 FQTMSDSIVTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 31 FqtmS~~I~~riDeMg~RIDdLEksI~dLm~ 61 (89)
|+.+....-.||..--..|++||+.+.-+-.
T Consensus 10 F~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~ 40 (93)
T 3t98_B 10 FRVLVQQFEVQLQQYRQQIEELENHLATQAN 40 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 4444444556677777778888888776543
No 164
>3ajm_A Programmed cell death protein 10; adaptor protein, dimerization, four-helix bundle, apoptosis; HET: 4IP; 2.30A {Homo sapiens} PDB: 3l8i_A 3rqe_A 3rqf_A 3rqg_A 3l8j_A
Probab=23.92 E-value=1e+02 Score=23.08 Aligned_cols=32 Identities=28% Similarity=0.494 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHH-HHHhhh------HHHHHHHHHHHHHh
Q 034611 31 FQTMSDSIVTKI-DEMGNR------INELEQSINDLRAE 62 (89)
Q Consensus 31 FqtmS~~I~~ri-DeMg~R------IDdLEksI~dLm~q 62 (89)
+.+.-..|++|| |||+.| |.++=.+|-.|..-
T Consensus 99 rA~~LK~iLSrIPdEI~dR~~FL~tIKeIAsaIKklLDA 137 (213)
T 3ajm_A 99 KARALKQILSKIPDEINDRVRFLQTIKDIASAIKELLDT 137 (213)
T ss_dssp HHHHHHHHHHTHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCchhhcchHHHHHHHHHHHHHHHHHHHH
Confidence 345557788888 888877 55555555555543
No 165
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=23.89 E-value=1.7e+02 Score=19.61 Aligned_cols=43 Identities=14% Similarity=0.248 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHhhhHHHHHHHHH
Q 034611 15 DMTVFVQNLLQQMQSRFQT------------------MSDSIVTKIDEMGNRINELEQSIN 57 (89)
Q Consensus 15 dLT~~Vq~LLqQmQ~kFqt------------------mS~~I~~riDeMg~RIDdLEksI~ 57 (89)
.+-.=|+.-|+.|+..|+. ...++..-|.+.-.-|+||+++|.
T Consensus 31 ~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ 91 (130)
T 4dnd_A 31 VVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIG 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455556666665554 233334445555555555555554
No 166
>3r2k_A Bacterioferritin, BFR; bacterial ferritin, iron binding, iron storage, iron homeost iron release, iron mobilization; 1.55A {Pseudomonas aeruginosa} SCOP: a.25.1.0 PDB: 3r2h_A 3r2l_A 3r2m_A 3r2o_A 3r2r_A 3r2s_A
Probab=23.85 E-value=80 Score=19.96 Aligned_cols=29 Identities=17% Similarity=0.220 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINEL 52 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdL 52 (89)
+..+...|...+.+...-.|.+..||-.|
T Consensus 37 ~~~l~~~f~~~a~ee~~had~l~eri~~l 65 (154)
T 3r2k_A 37 FSKLYERLNHEMEEETQHADALLRRILLL 65 (154)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 45677777777777777777777777554
No 167
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=23.71 E-value=2.2e+02 Score=21.75 Aligned_cols=43 Identities=19% Similarity=0.457 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHHHHhh
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTKI----DEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~ri----DeMg~RIDdLEksI~dLm~qa 63 (89)
+-++|.||.+= ...+..||+-| ..++.|+..|...|.-|....
T Consensus 34 L~gilRQL~dL-s~~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~~v 80 (279)
T 3p8c_D 34 LANIIRQLSSL-SKYAEDIFGELFNEAHSFSFRVNSLQERVDRLSVSV 80 (279)
T ss_dssp HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 44678888653 44555666554 688999999999999998765
No 168
>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}
Probab=23.68 E-value=1.6e+02 Score=19.38 Aligned_cols=47 Identities=15% Similarity=0.362 Sum_probs=30.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Q 034611 12 STADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 12 s~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~q 62 (89)
+..+-..|++.=+..+..+...+. ..+.+.-.+|..++..|..++.+
T Consensus 95 ~~~eA~~~l~~ri~~l~~~l~~l~----~~l~~l~~~i~~~~~~l~~l~~~ 141 (151)
T 2zdi_C 95 SIDEAISFLEKRLKEYDEAIKKTQ----GALAELEKRIGEVARKAQEVQQK 141 (151)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHTHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666666666666655443 45667777788888888888764
No 169
>2xze_Q Charged multivesicular BODY protein 3; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=23.44 E-value=46 Score=18.96 Aligned_cols=14 Identities=43% Similarity=0.665 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHH
Q 034611 21 QNLLQQMQSRFQTM 34 (89)
Q Consensus 21 q~LLqQmQ~kFqtm 34 (89)
+.-+..||.||+.+
T Consensus 25 Eedi~~MqsRLaAL 38 (40)
T 2xze_Q 25 EEALEAMQSRLATL 38 (40)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 35688899999875
No 170
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=23.39 E-value=1.1e+02 Score=22.00 Aligned_cols=23 Identities=26% Similarity=0.359 Sum_probs=15.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 034611 40 TKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm~q 62 (89)
..|+....||..||..|.++|.+
T Consensus 97 kEie~~~~~i~~lE~eile~~e~ 119 (256)
T 3na7_A 97 IEEDIAKERSNQANREIENLQNE 119 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44666667777777777777765
No 171
>2c0j_B R32611_2; palmitate; HET: PLM; 2.20A {Homo sapiens} PDB: 2j3t_B*
Probab=23.39 E-value=60 Score=22.37 Aligned_cols=33 Identities=9% Similarity=0.217 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHhhhH
Q 034611 17 TVFVQNLLQQMQSRFQTMS----DSIVTKIDEMGNRI 49 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS----~~I~~riDeMg~RI 49 (89)
+-.--.+.++++.++...+ +.+..||+.||-+|
T Consensus 9 ~~l~~elV~~~~~~~~~~~~~~~~~v~~~Le~mGy~I 45 (160)
T 2c0j_B 9 EFLHTEMVAELWAHDPDPGPGGQKMSLSVLEGMGFRV 45 (160)
T ss_dssp HHHHHHHHHHTC-----------CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCcccccHHHHHHHHHHHhHHH
Confidence 3334567777788877542 34578899988766
No 172
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=23.31 E-value=2.1e+02 Score=23.17 Aligned_cols=35 Identities=17% Similarity=0.484 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHHHHhhh-------HHHHHHHHHHHHHh
Q 034611 28 QSRFQTMSDSIVTKIDEMGNR-------INELEQSINDLRAE 62 (89)
Q Consensus 28 Q~kFqtmS~~I~~riDeMg~R-------IDdLEksI~dLm~q 62 (89)
.++|..+|+.+-.||-.+=.+ |.-|+.+|.++..+
T Consensus 108 dn~~~e~s~eLe~~i~~lk~~V~~q~~~ir~Lq~~l~~q~~k 149 (390)
T 1deq_A 108 DNTFKQINEDLRSRIEILRRKVIEQVQRINLLQKNVRDQLVD 149 (390)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 345556666665555444443 44566666666543
No 173
>2e9x_C GINS complex subunit 3; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.3 d.344.1.4 PDB: 2eho_D* 2q9q_D*
Probab=23.30 E-value=60 Score=23.48 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----HHHhhhHHHHHHHHHHH
Q 034611 17 TVFVQNLLQQMQSRFQTMSDSIVTKI----DEMGNRINELEQSINDL 59 (89)
Q Consensus 17 T~~Vq~LLqQmQ~kFqtmS~~I~~ri----DeMg~RIDdLEksI~dL 59 (89)
..+.+.|++-+..||-.+.+...... .+.-.++|.+|+.|=..
T Consensus 135 ~~L~~~L~~tf~~R~~~I~d~a~~~~~~~~~~~~~~Ld~~Er~Lf~~ 181 (219)
T 2e9x_C 135 ADISQSLLQTFIGRFRRIMDSSQNAYNEDTSALVARLDEMERGLFQT 181 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSSCCCCHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHhcCCHHHHHHHHH
Confidence 45667788889999998888776553 34688999999987553
No 174
>2clb_A DPS-like protein; DI-iron carboxylate, hypothetical protein, bacterioferritin, hydrogen peroxide, metal binding protein, archaea; 2.4A {Sulfolobus solfataricus}
Probab=23.05 E-value=62 Score=22.15 Aligned_cols=28 Identities=18% Similarity=0.100 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHH
Q 034611 26 QMQSRFQTMSDSIVTKIDEMGNRINELE 53 (89)
Q Consensus 26 QmQ~kFqtmS~~I~~riDeMg~RIDdLE 53 (89)
.+...|...+.+...-+|++..||-.|.
T Consensus 58 ~lh~~f~~~~~ee~~haD~iaERI~~LG 85 (188)
T 2clb_A 58 GLKEIAEDARLEDRLHFELMTQRIYELG 85 (188)
T ss_dssp GGHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4567888888888899999999997775
No 175
>2dae_A KIAA0733 protein; mitogen-activated protein kinase kinase kinase 7 interacting protein 2, MAP3K7IP2, CUE domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.89 E-value=19 Score=23.30 Aligned_cols=40 Identities=20% Similarity=0.390 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhh
Q 034611 22 NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm~qa 63 (89)
.||.+|+.||.++.+.++++. |..-=.+||+=|..|-.++
T Consensus 12 qvfheLkQrFPEvPd~VVsqc--~~qN~~Nl~aC~~~L~qES 51 (75)
T 2dae_A 12 QVLHDLRQKFPEVPEVVVSRC--MLQNNNNLDACCAVLSQES 51 (75)
T ss_dssp HHHHHHHHHSSSSCHHHHHHH--HTTTTSCSHHHHHHHHHHH
T ss_pred HHHHHHHHhcccCcHHHHHHH--HHHhccCHHHHHHHHHHhc
Confidence 578999999999999998763 3333334455555554443
No 176
>3tul_A Cell invasion protein SIPB; translocator, type three secretion system, coiled-coil, VIRU cell invasion; 2.79A {Salmonella enterica subsp}
Probab=22.62 E-value=1.9e+02 Score=20.79 Aligned_cols=36 Identities=11% Similarity=0.155 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHH----------hhhHHHHHHHHHHHHHhh
Q 034611 28 QSRFQTMSDSIVTKIDEM----------GNRINELEQSINDLRAEM 63 (89)
Q Consensus 28 Q~kFqtmS~~I~~riDeM----------g~RIDdLEksI~dLm~qa 63 (89)
..-|++..++--+-+|.| -+.+|+||+-|+.+=+..
T Consensus 47 S~eFqtal~eAq~Atd~ye~ai~n~~sA~~~~d~lekKl~~aq~kL 92 (158)
T 3tul_A 47 SKEFQTALGEAQEATDLYEASIKKTDTAKSVYDAATKKLTQAQNKL 92 (158)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHH
Confidence 344777666444444444 467888888888776553
No 177
>1buu_A Protein (mannose-binding protein A); lectin, HOST defense, metalloprotein, sugar binding protein; 1.90A {Rattus norvegicus} SCOP: d.169.1.1 h.1.1.1
Probab=22.61 E-value=1e+02 Score=20.00 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=7.1
Q ss_pred HHHHhhhHHHHHHHHHHH
Q 034611 42 IDEMGNRINELEQSINDL 59 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dL 59 (89)
|..|-++|..|+..+..|
T Consensus 25 l~~L~~~~~~L~~~l~~l 42 (168)
T 1buu_A 25 LANMEAEINTLKSKLELT 42 (168)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333333444444444333
No 178
>1yzm_A FYVE-finger-containing RAB5 effector protein rabenosyn-5; RAB GTPase, vesicular trafficking, protein transport; 1.50A {Homo sapiens} SCOP: a.2.19.1
Probab=22.53 E-value=52 Score=19.53 Aligned_cols=19 Identities=26% Similarity=0.597 Sum_probs=12.6
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 034611 40 TKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm~q 62 (89)
+|+||+. -||.|+.+|-.+
T Consensus 25 ~r~DEV~----~Le~NLrEL~~e 43 (51)
T 1yzm_A 25 GRMDEVR----TLQENLRQLQDE 43 (51)
T ss_dssp TCHHHHH----HHHHHHHHHHHH
T ss_pred CCcHHHH----HHHHHHHHHHHH
Confidence 4566643 478888888654
No 179
>4fm3_A Uncharacterized hypothetical protein; PF14346 family protein, DUF4398, structural genomics, joint for structural genomics, JCSG; HET: PG4; 2.47A {Pseudomonas aeruginosa}
Probab=22.47 E-value=58 Score=21.57 Aligned_cols=16 Identities=38% Similarity=0.831 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHhhC
Q 034611 49 INELEQSINDLRAEMG 64 (89)
Q Consensus 49 IDdLEksI~dLm~qaG 64 (89)
+++|.++|..|..++|
T Consensus 80 ~~el~~~I~~LrqEl~ 95 (98)
T 4fm3_A 80 LGELDKSLKRLRKQLG 95 (98)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhc
Confidence 5666666666666665
No 180
>3v1a_A Computational design, MID1-APO1; helix-turn-helix, metal binding, homodimer, de novo protein, binding protein; 0.98A {Artificial gene} PDB: 3v1b_A* 3v1c_A* 3v1d_A* 3v1f_A* 3v1e_A
Probab=22.11 E-value=55 Score=19.26 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=13.2
Q ss_pred HHHHHHhhhHHHHHHHHHHHHHh
Q 034611 40 TKIDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm~q 62 (89)
+|.||+. -|++|+.+|-.+
T Consensus 24 rRfdEV~----~L~~NL~EL~~E 42 (48)
T 3v1a_A 24 GRMDEVR----TLQENLHQLMHE 42 (48)
T ss_dssp TCHHHHH----HHHHHHHHHHHH
T ss_pred cChHHHH----HHHHHHHHHHHH
Confidence 4566654 488888888665
No 181
>2qqy_A Sigma B operon; dodecameric alpha-helical, ferritin fold, structural genomic protein structure initiative; 2.00A {Bacillus anthracis str}
Probab=22.05 E-value=1.4e+02 Score=18.33 Aligned_cols=28 Identities=14% Similarity=0.163 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q 034611 25 QQMQSRFQTMSDSIVTKIDEMGNRINEL 52 (89)
Q Consensus 25 qQmQ~kFqtmS~~I~~riDeMg~RIDdL 52 (89)
..+...|...+.+-..-.|.+..||..|
T Consensus 42 ~~l~~~f~~~a~ee~~Ha~~l~e~i~~l 69 (149)
T 2qqy_A 42 QVLKPFFESEISDEQGHALYLAEKIKTL 69 (149)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3456666666666666666666666543
No 182
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=21.95 E-value=1.6e+02 Score=18.53 Aligned_cols=24 Identities=25% Similarity=0.319 Sum_probs=14.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh
Q 034611 23 LLQQMQSRFQTMSDSIVTKIDEMG 46 (89)
Q Consensus 23 LLqQmQ~kFqtmS~~I~~riDeMg 46 (89)
||.....-|+.+..+|..+|+...
T Consensus 2 lF~~YE~df~~~~~~i~~~l~~~~ 25 (97)
T 3onj_A 2 LLISYESDFKTTLEQAKASLAEAP 25 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGG
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555566666677766666554
No 183
>1m1j_A Fibrinogen alpha subunit; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: h.1.8.1 PDB: 1ei3_A
Probab=21.85 E-value=3.5e+02 Score=22.60 Aligned_cols=37 Identities=27% Similarity=0.452 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHh
Q 034611 26 QMQSRFQTMSDSIVTKIDEMG-------NRINELEQSINDLRAE 62 (89)
Q Consensus 26 QmQ~kFqtmS~~I~~riDeMg-------~RIDdLEksI~dLm~q 62 (89)
+..++|...|..+-.||-.+= ++|.-|-.+|.++...
T Consensus 104 dndn~~~e~S~eLe~ri~yIK~kVd~qi~~IrvLq~~l~~q~sk 147 (491)
T 1m1j_A 104 QLDENYGHVSTELRRRIVTLKQRVATQVNRIKALQNSIQEQVVE 147 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344556666666655544333 4555566666666543
No 184
>3s84_A Apolipoprotein A-IV; four helix bundle, transport protein; 2.40A {Homo sapiens}
Probab=21.54 E-value=2.5e+02 Score=20.75 Aligned_cols=48 Identities=4% Similarity=0.086 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034611 13 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm 60 (89)
..+|...+..+=+||+-+++.+-..+.--+++|-+.|+.+.+.|.+=+
T Consensus 200 ~e~l~~~l~~~~~~~~qq~e~f~~~~~p~~e~~~~~l~~~~e~l~~~l 247 (273)
T 3s84_A 200 TEGLQKSLAELGGHLDQQVEEFRRRVEPYGENFNKALVQQMEQLRQKL 247 (273)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHh
Confidence 344444444444444444444444444445666666655555544433
No 185
>3mq1_A Mite allergen DER P 5; DUST mite; HET: MRD MPD; 2.80A {Dermatophagoides pteronyssinus}
Probab=21.50 E-value=98 Score=20.90 Aligned_cols=30 Identities=13% Similarity=0.365 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034611 22 NLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS 55 (89)
Q Consensus 22 ~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEks 55 (89)
.|.+.++.+|..+-..++ -.+..|++||++
T Consensus 4 ~Lv~~~~~~~~k~E~~Ll----~Ls~Qi~~LEkt 33 (103)
T 3mq1_A 4 SLMERIHEQIKKGELALF----YLQEQINHFEEK 33 (103)
T ss_dssp CCHHHHHHHHHHHHHHHH----HHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHH----HHHHHHHHHHcc
Confidence 356777788866543333 456677777765
No 186
>1woz_A 177AA long conserved hypothetical protein (ST1454; structural genomics, unknown function; 1.94A {Sulfolobus tokodaii}
Probab=21.40 E-value=1.3e+02 Score=21.16 Aligned_cols=42 Identities=24% Similarity=0.385 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHhh
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTK-----IDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~r-----iDeMg~RIDdLEksI~dLm~qa 63 (89)
+...|.++|...-.+...+-+- |.+ ..|+.||+-|..+..+.
T Consensus 50 ~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~--~~v~~LE~~id~~~~~l 96 (177)
T 1woz_A 50 MKKDLERVQVELFEIGEDLSTQSSKKKIDE--KYVKWLEERTVEYRKES 96 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSCCCCH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccccCCCH--HHHHHHHHHHHHHHhhC
Confidence 4455666777666665555541 221 55888999998888876
No 187
>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A
Probab=21.32 E-value=1.5e+02 Score=18.17 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=14.9
Q ss_pred HHHHHHHhhhHHHHHHHHHHHHH
Q 034611 39 VTKIDEMGNRINELEQSINDLRA 61 (89)
Q Consensus 39 ~~riDeMg~RIDdLEksI~dLm~ 61 (89)
-.++.....++.+|++.+..++.
T Consensus 90 e~~~~~l~~~l~~lk~~l~~~~~ 112 (117)
T 2zqm_A 90 ERQEKKLNEKLKELTAQIQSALR 112 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHc
Confidence 35566666667777777776664
No 188
>2jmh_A BLO T 5, mite allergen BLO T 5; DUST mites, group 5; NMR {Blomia tropicalis} PDB: 2jrk_A
Probab=21.26 E-value=1.6e+02 Score=20.27 Aligned_cols=29 Identities=14% Similarity=0.381 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Q 034611 23 LLQQMQSRFQTMSDSIVTKIDEMGNRINELEQS 55 (89)
Q Consensus 23 LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEks 55 (89)
|.+.++.+|..+-..++ -.+..|++||++
T Consensus 20 Lv~~~~~~~~k~E~~Ll----~Ls~Qi~~LE~t 48 (119)
T 2jmh_A 20 LIEQANHAIEKGEHQLL----YLQHQLDELNEN 48 (119)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH----HHHHHHHHHHhc
Confidence 56677777766543332 456667777765
No 189
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=21.22 E-value=1e+02 Score=17.78 Aligned_cols=15 Identities=20% Similarity=0.494 Sum_probs=8.0
Q ss_pred HHHHHHhhhHHHHHH
Q 034611 40 TKIDEMGNRINELEQ 54 (89)
Q Consensus 40 ~riDeMg~RIDdLEk 54 (89)
.+|.+.-.|+.+||+
T Consensus 23 ~kI~~lqkKlkeLee 37 (42)
T 2l5g_B 23 QQISKLKKKQQQLEE 37 (42)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 345555555555554
No 190
>1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer, solution structure, contractIle protein; NMR {Chlamydomonas reinhardtii}
Probab=20.99 E-value=1.7e+02 Score=18.58 Aligned_cols=21 Identities=10% Similarity=0.287 Sum_probs=15.2
Q ss_pred CCCcCCHHHHHHHHHHHHHHH
Q 034611 7 EDPKQSTADMTVFVQNLLQQM 27 (89)
Q Consensus 7 ~dpkqs~~dLT~~Vq~LLqQm 27 (89)
++.+-.+.++...++..|++.
T Consensus 9 ~~~~f~~~~v~~ii~~~l~~~ 29 (114)
T 1xdx_A 9 EEAAFVADDVSNIIKESIDAV 29 (114)
T ss_dssp TCCSCCCHHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHh
Confidence 344457789999999888654
No 191
>3lyn_A Sperm lysin; abalone lysin, fertilization protein, gamete recognition protein, cell adhesion; 1.70A {Haliotis fulgens} SCOP: a.19.1.1
Probab=20.91 E-value=63 Score=22.80 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 034611 25 QQMQSRFQTMSDSIVTKIDEMGN 47 (89)
Q Consensus 25 qQmQ~kFqtmS~~I~~riDeMg~ 47 (89)
+-||+.++..|.-|..+|+.+|+
T Consensus 56 rymqt~W~nym~W~~k~i~kLgR 78 (136)
T 3lyn_A 56 RYMQTHWQNYMLWVKRKIKALGR 78 (136)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHhHHHHHHHHHHHHHHhCC
Confidence 56999999999999999887654
No 192
>1nog_A Conserved hypothetical protein TA0546; structural genomics, PSI, protein structure initiative, MIDW center for structural genomics; 1.55A {Thermoplasma acidophilum} SCOP: a.25.2.2
Probab=20.87 E-value=1.4e+02 Score=21.11 Aligned_cols=42 Identities=21% Similarity=0.449 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHhhhHHHHHHHHHHHHHhh
Q 034611 20 VQNLLQQMQSRFQTMSDSIVTK-----IDEMGNRINELEQSINDLRAEM 63 (89)
Q Consensus 20 Vq~LLqQmQ~kFqtmS~~I~~r-----iDeMg~RIDdLEksI~dLm~qa 63 (89)
+...|.++|...-.+...+-+- |.+ ..|+.||+-|..+..+.
T Consensus 51 ~~~~L~~IQ~~Lf~lga~la~~~~~~~i~~--~~v~~LE~~id~~~~~l 97 (177)
T 1nog_A 51 IRNDLFRIQNDLFVLGEDVSTGGKGRTVTR--EMIDYLEARVKEMKAEI 97 (177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSSSCCCH--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCcccCCCH--HHHHHHHHHHHHHHhhC
Confidence 4455666777666665555542 221 56889999999988876
No 193
>2i0m_A Phosphate transport system protein PHOU; zinc-binding protein, structural genomics, PSI-2, PROT structure initiative; 2.40A {Streptococcus pneumoniae}
Probab=20.82 E-value=1.9e+02 Score=19.14 Aligned_cols=48 Identities=13% Similarity=0.152 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Q 034611 13 TADMTVFVQNLLQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 13 ~~dLT~~Vq~LLqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dLm 60 (89)
..+|...|...|...-+-|.+.......++-.+-..||+|++.+..-.
T Consensus 119 l~~m~~~v~~~l~~a~~a~~~~d~~~a~~v~~~d~~iD~l~~~~~~~~ 166 (216)
T 2i0m_A 119 LHQMGKLSLSMLADLLVAFPLHQASKAISIAQKDEQIDQYYYALSKEI 166 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666677777777777776666666777777788999988886543
No 194
>2vy8_A Polymerase basic protein 2; viral protein, transcription, mRNA capping, mitochondrion, mRNA processing; 1.2A {Influenza a virus} PDB: 2vy7_A*
Probab=20.66 E-value=88 Score=22.39 Aligned_cols=31 Identities=32% Similarity=0.528 Sum_probs=22.5
Q ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHHH-HHHH
Q 034611 9 PKQSTADMTVFVQNLLQQMQSRFQTMS-DSIV 39 (89)
Q Consensus 9 pkqs~~dLT~~Vq~LLqQmQ~kFqtmS-~~I~ 39 (89)
|+--...-..||.+||+||.+-..+|- +|||
T Consensus 49 p~~~~gqysgf~r~~~~qmrd~~~~~~t~q~i 80 (157)
T 2vy8_A 49 PKAIRGQYSGFVRTLFQQMRDVLGTFDTTQII 80 (157)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHCC-CHHHHH
T ss_pred hHHHhhhhhHHHHHHHHHHHHHHccccHHHHH
Confidence 554556788999999999999866553 4554
No 195
>3puk_A Syntaxin-binding protein 3; membrane trafficking, SM protein, snare proteins, binding protein, endocytosis-exocytosis complex; 3.05A {Mus musculus} PDB: 2pjx_A
Probab=20.61 E-value=1.2e+02 Score=24.67 Aligned_cols=47 Identities=13% Similarity=0.247 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHH--HHHHHHHH---HHHHHHHHHHHHHHhhhHHHHHHHHH
Q 034611 11 QSTADMTVFVQNL--LQQMQSRF---QTMSDSIVTKIDEMGNRINELEQSIN 57 (89)
Q Consensus 11 qs~~dLT~~Vq~L--LqQmQ~kF---qtmS~~I~~riDeMg~RIDdLEksI~ 57 (89)
.+..||..||..| +++++.+. -++...|+..+..==.++=++|++|.
T Consensus 322 ~s~~dl~~~v~~lp~~~~~~~~l~~H~~ia~~l~~~~~~~l~~~~e~EQ~l~ 373 (592)
T 3puk_A 322 TSLSALTQLMKKMPHFRKQISKQVVHLNLAEDCMNKFKLNIEKLCKTEQDLA 373 (592)
T ss_dssp -CCTTHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788999999986 34444444 37778888777641122346777764
No 196
>1nfn_A Apolipoprotein E3; lipid transport, heparin-binding, plasma protein, HDL, VLDL; 1.80A {Homo sapiens} SCOP: a.24.1.1 PDB: 1h7i_A 1ea8_A 1b68_A 1nfo_A 2kc3_A 1ya9_A
Probab=20.33 E-value=1.1e+02 Score=21.47 Aligned_cols=50 Identities=14% Similarity=0.120 Sum_probs=0.0
Q ss_pred CCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHhhhHHHHHHHHH
Q 034611 8 DPKQSTADMTVFVQNLLQQMQSRFQTMSDSI-------------VTKIDEMGNRINELEQSIN 57 (89)
Q Consensus 8 dpkqs~~dLT~~Vq~LLqQmQ~kFqtmS~~I-------------~~riDeMg~RIDdLEksI~ 57 (89)
.|+..-..+..++-.-+.++++.+..+..+| ...++++...+++|.+.|.
T Consensus 21 ~~~s~~e~v~~~~~~y~~~l~~~a~~~~eqL~~s~l~~el~~l~~e~~~~l~~~~~~l~~qL~ 83 (191)
T 1nfn_A 21 QSGQRWELALGRFWDYLRWVQTLSEQVQEELLSSQVTQELRALMDETMKELKAYKSELEEQLT 83 (191)
T ss_dssp --CCHHHHHHHHHHHHHHHHHHCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHTTC--
T ss_pred CCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHhcc
No 197
>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1
Probab=20.24 E-value=1.4e+02 Score=17.47 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=13.1
Q ss_pred HHHHHHhhhHHHHHHHHHHHH
Q 034611 40 TKIDEMGNRINELEQSINDLR 60 (89)
Q Consensus 40 ~riDeMg~RIDdLEksI~dLm 60 (89)
.+-+++-.+|..|+..+.-|.
T Consensus 37 ~~N~~L~~~i~~L~~E~~~Lk 57 (63)
T 1ci6_A 37 KKNEALKERADSLAKEIQYLK 57 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777766666553
No 198
>1ecm_A Endo-oxabicyclic transition state analogue; P-protein, chorismate mutase domain, chorismate mutase; HET: TSA; 2.20A {Escherichia coli} SCOP: a.130.1.1
Probab=20.09 E-value=81 Score=19.82 Aligned_cols=21 Identities=24% Similarity=0.396 Sum_probs=12.6
Q ss_pred HHHHhhhHHHHHHHHHHHHHh
Q 034611 42 IDEMGNRINELEQSINDLRAE 62 (89)
Q Consensus 42 iDeMg~RIDdLEksI~dLm~q 62 (89)
|++.=.+||++-..|-+|+++
T Consensus 7 L~~lR~~ID~iD~~L~~LL~~ 27 (109)
T 1ecm_A 7 LLALREKISALDEKLLALLAE 27 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 555556666666666666553
No 199
>3pwx_A Putative flagellar HOOK-associated protein; structural genomics, structural protein, PSI-2, protein STRU initiative; 2.50A {Vibrio parahaemolyticus}
Probab=20.07 E-value=2.4e+02 Score=20.05 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Q 034611 24 LQQMQSRFQTMSDSIVTKIDEMGNRINELEQSINDL 59 (89)
Q Consensus 24 LqQmQ~kFqtmS~~I~~riDeMg~RIDdLEksI~dL 59 (89)
++..-..++...+.|....-++|.|...||..++-|
T Consensus 176 ~~~al~~ld~a~~~v~~~ra~lGa~~nrle~~~~~l 211 (239)
T 3pwx_A 176 VDASLNAIDDTMANVLGAMTEIGGRHNNLDLMDGAH 211 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444455555555555566666666666555544
No 200
>3he4_A Synzip6; heterodimeric coiled-coil, de novo protein; 2.46A {Artificial gene}
Probab=20.04 E-value=1.5e+02 Score=17.78 Aligned_cols=25 Identities=28% Similarity=0.636 Sum_probs=14.4
Q ss_pred HHHHHHHH----HHhhhHHHHHHHHHHHH
Q 034611 36 DSIVTKID----EMGNRINELEQSINDLR 60 (89)
Q Consensus 36 ~~I~~riD----eMg~RIDdLEksI~dLm 60 (89)
..|+.|+. .+-.-|-.|||.|+.|-
T Consensus 23 enivarlendnanlekdianlekdianle 51 (56)
T 3he4_A 23 ENIVARLENDNANLEKDIANLEKDIANLE 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHHHH
Confidence 34555553 23445667777777664
No 201
>1szq_A 2-methylcitrate dehydratase; propionate catabolism, 2-methylcitric acid cycle structural genomics target, NYSGXRC, PSI; 2.70A {Escherichia coli} SCOP: e.44.1.1
Probab=20.02 E-value=1.3e+02 Score=23.78 Aligned_cols=37 Identities=19% Similarity=0.250 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHHH-----HHHHHHhhhHHHHHH-HHHHHHH
Q 034611 25 QQMQSRFQTMSDSIV-----TKIDEMGNRINELEQ-SINDLRA 61 (89)
Q Consensus 25 qQmQ~kFqtmS~~I~-----~riDeMg~RIDdLEk-sI~dLm~ 61 (89)
.++..||..+...++ .||=+.-.+++.|+. .+.+|+.
T Consensus 437 ~~l~~KF~~~~~~~~~~~~~~~i~~~~~~le~~~~~~v~~l~~ 479 (483)
T 1szq_A 437 PKLVDKFKINLARQFPTRQQQRILEVSLDRARLEQMPVNEYLD 479 (483)
T ss_dssp HHHHHHHHHHHHHHSCHHHHHHHHHHHHCHHHHHHSBHHHHHT
T ss_pred HHHHHHHHHHhhccCCHHHHHHHHHHHhChhccccCCHHHHHH
Confidence 367788877654333 344455556666776 6888875
Done!