BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034617
         (89 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V82|A Chain A, Crystal Structure Of Human Glcat-P Apo Form
 pdb|1V82|B Chain B, Crystal Structure Of Human Glcat-P Apo Form
 pdb|1V83|A Chain A, Crystal Structure Of Human Glcat-P In Complex With Udp
          And Mn2+
 pdb|1V83|B Chain B, Crystal Structure Of Human Glcat-P In Complex With Udp
          And Mn2+
 pdb|1V84|A Chain A, Crystal Structure Of Human Glcat-p In Complex With N-
          Acetyllactosamine, Udp, And Mn2+
 pdb|1V84|B Chain B, Crystal Structure Of Human Glcat-p In Complex With N-
          Acetyllactosamine, Udp, And Mn2+
          Length = 253

 Score = 25.8 bits (55), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 12/28 (42%), Positives = 17/28 (60%)

Query: 43 QLTRLPSLLEGCDYKHWLVVMEAPKGYP 70
          +LTR+ + L      HWLVV +AP+  P
Sbjct: 20 ELTRMANTLLHVPNLHWLVVEDAPRRTP 47


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.140    0.452 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,148,287
Number of Sequences: 62578
Number of extensions: 56701
Number of successful extensions: 111
Number of sequences better than 100.0: 1
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 110
Number of HSP's gapped (non-prelim): 1
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)