Query 034617
Match_columns 89
No_of_seqs 65 out of 67
Neff 2.7
Searched_HMMs 29240
Date Mon Mar 25 07:19:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034617.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034617hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bf9_A Pancreatic hormone; tur 61.8 6.7 0.00023 22.5 2.6 18 64-81 6-23 (36)
2 1bba_A Bovine pancreatic polyp 59.0 5.4 0.00018 22.9 1.8 18 64-81 6-23 (36)
3 1vje_A Autoinducer-2 productio 48.7 33 0.0011 25.0 5.1 32 53-88 81-112 (166)
4 1j6x_A Autoinducer-2 productio 47.8 35 0.0012 24.7 5.1 32 53-88 79-110 (160)
5 1j6w_A Autoinducer-2 productio 46.1 36 0.0012 24.9 5.0 32 53-88 82-113 (175)
6 1j98_A Autoinducer-2 productio 42.8 39 0.0013 24.3 4.6 32 53-88 83-114 (157)
7 3ulx_A Stress-induced transcri 39.7 12 0.00041 26.6 1.5 19 64-82 14-35 (174)
8 1ut7_A No apical meristem prot 37.8 16 0.00053 25.8 1.9 19 64-82 16-37 (171)
9 1f8p_A Neuropeptide Y (PNPY); 37.1 17 0.00058 20.8 1.6 18 64-81 6-23 (37)
10 2oml_A Ribosomal large subunit 25.9 29 0.00099 23.5 1.5 20 45-68 2-21 (189)
11 2oix_A Xanthomonas outer prote 24.7 60 0.002 22.2 3.0 23 46-68 62-86 (186)
12 3g21_A GAG polyprotein, capsid 23.3 44 0.0015 21.6 2.0 16 65-80 59-74 (77)
13 3abf_A 4-oxalocrotonate tautom 23.0 83 0.0028 16.9 2.9 19 70-88 15-33 (64)
14 2iru_A Putative DNA ligase-lik 22.9 31 0.0011 26.9 1.4 17 66-82 23-39 (303)
15 2l60_A Peptide YY; GPCR ligand 22.8 30 0.001 20.2 1.0 17 65-81 11-27 (41)
16 1use_A VAsp, vasodilator-stimu 20.2 73 0.0025 18.8 2.3 14 72-85 28-41 (45)
No 1
>2bf9_A Pancreatic hormone; turkey, pancreas, polypeptide, atomic resolution, anisotropic refinement; HET: TYC; 0.99A {Meleagris gallopavo} SCOP: j.6.1.1 PDB: 1ppt_A 2k76_A 2h3s_B* 2h3t_B* 2h4b_C*
Probab=61.75 E-value=6.7 Score=22.52 Aligned_cols=18 Identities=17% Similarity=0.370 Sum_probs=14.7
Q ss_pred eCCCCCCCHHHHHHHHHH
Q 034617 64 EAPKGYPPRDEIVNGYVK 81 (89)
Q Consensus 64 d~P~~~psr~emId~Yvk 81 (89)
+.|++..|.|||..+|..
T Consensus 6 ~~PG~dA~~Eela~Y~~~ 23 (36)
T 2bf9_A 6 TYPGDDAPVEDLIRFYND 23 (36)
T ss_dssp CCCCTTSCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 357779999999998865
No 2
>1bba_A Bovine pancreatic polypeptide; pancreatic hormone; NMR {Bos taurus} SCOP: j.6.1.1 PDB: 1ljv_A 1tz5_A 1v1d_A
Probab=58.98 E-value=5.4 Score=22.94 Aligned_cols=18 Identities=11% Similarity=0.167 Sum_probs=14.7
Q ss_pred eCCCCCCCHHHHHHHHHH
Q 034617 64 EAPKGYPPRDEIVNGYVK 81 (89)
Q Consensus 64 d~P~~~psr~emId~Yvk 81 (89)
+.|++..|.|||..+|..
T Consensus 6 ~~PG~dA~pEela~Y~~~ 23 (36)
T 1bba_A 6 EYPGDNATPEQMAQYAAE 23 (36)
T ss_dssp CCCSSCSSTTHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 357779999999999865
No 3
>1vje_A Autoinducer-2 production protein LUXS; structural genomics, hydrolase; 1.64A {Deinococcus radiodurans} SCOP: d.185.1.2 PDB: 1vgx_A 1inn_A 1j6v_A 1vh2_A
Probab=48.69 E-value=33 Score=24.97 Aligned_cols=32 Identities=19% Similarity=0.482 Sum_probs=28.8
Q ss_pred CCCcceeEEEEeCCCCCCCHHHHHHHHHHHHHHhhC
Q 034617 53 GCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALG 88 (89)
Q Consensus 53 GcDy~HWLVvMd~P~~~psr~emId~YvkTLAkVLG 88 (89)
||..-+.|++. |.++.+|+++...++|..|+.
T Consensus 81 GCrTGFYlil~----G~~~~~~v~~~~~~~l~~Il~ 112 (166)
T 1vje_A 81 GARTGMYMAVI----GEPDEQGVMKAFEAALKDTAG 112 (166)
T ss_dssp TTSSEEEEEEE----SSCCHHHHHHHHHHHHHHHHT
T ss_pred ccccccEEEEe----CCCCHHHHHHHHHHHHHHHHh
Confidence 99999999986 568899999999999999874
No 4
>1j6x_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.38A {Helicobacter pylori} SCOP: d.185.1.2
Probab=47.83 E-value=35 Score=24.67 Aligned_cols=32 Identities=28% Similarity=0.437 Sum_probs=28.8
Q ss_pred CCCcceeEEEEeCCCCCCCHHHHHHHHHHHHHHhhC
Q 034617 53 GCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALG 88 (89)
Q Consensus 53 GcDy~HWLVvMd~P~~~psr~emId~YvkTLAkVLG 88 (89)
||..-+.|++. |.++.+|+++...++|..|+.
T Consensus 79 GCrTGFYlil~----G~~~~~~v~~~~~~~l~~Il~ 110 (160)
T 1j6x_A 79 GCQTGFYLTVL----NHDNYTEILEVLEKTMQDVLK 110 (160)
T ss_dssp TTSSEEEEEEE----SCCCHHHHHHHHHHHHHHHTT
T ss_pred CcchhcEEEEe----CCCCHHHHHHHHHHHHHHHHh
Confidence 99999999996 567899999999999999874
No 5
>1j6w_A Autoinducer-2 production protein LUXS; alpha-beta fold, signaling protein; 2.10A {Haemophilus influenzae} SCOP: d.185.1.2 PDB: 1joe_A
Probab=46.08 E-value=36 Score=24.87 Aligned_cols=32 Identities=19% Similarity=0.658 Sum_probs=28.9
Q ss_pred CCCcceeEEEEeCCCCCCCHHHHHHHHHHHHHHhhC
Q 034617 53 GCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALG 88 (89)
Q Consensus 53 GcDy~HWLVvMd~P~~~psr~emId~YvkTLAkVLG 88 (89)
||..-+.|++. |.++.+|+++...++|..|+.
T Consensus 82 GCrTGFYlil~----G~~~~~~v~~~~~~~l~~Il~ 113 (175)
T 1j6w_A 82 GCRTGFYMSLI----GTPNEQKVSEAWLASMQDVLG 113 (175)
T ss_dssp TTSSEEEEEEE----SCCCHHHHHHHHHHHHHHHHT
T ss_pred CcccccEEEEe----CCCCHHHHHHHHHHHHHHHHh
Confidence 99999999986 568899999999999999873
No 6
>1j98_A Autoinducer-2 production protein LUXS; autoinducer synthesis, signaling protein; 1.20A {Bacillus subtilis} SCOP: d.185.1.2 PDB: 1jqw_A 1jvi_A* 1ie0_A 2fqo_A* 2fqt_A* 1ycl_A*
Probab=42.78 E-value=39 Score=24.32 Aligned_cols=32 Identities=34% Similarity=0.488 Sum_probs=28.6
Q ss_pred CCCcceeEEEEeCCCCCCCHHHHHHHHHHHHHHhhC
Q 034617 53 GCDYKHWLVVMEAPKGYPPRDEIVNGYVKTLASALG 88 (89)
Q Consensus 53 GcDy~HWLVvMd~P~~~psr~emId~YvkTLAkVLG 88 (89)
||..-+.|++. |.++.+|+++...++|..|+.
T Consensus 83 GCrTGFYl~l~----G~~~~~~v~~~~~~~l~~il~ 114 (157)
T 1j98_A 83 GCQTGYYLVVS----GETTSAEIVDLLEDTMKEAVE 114 (157)
T ss_dssp TTSSEEEEEEE----ECCCHHHHHHHHHHHHHHHTT
T ss_pred CcccccEEEEe----CCCCHHHHHHHHHHHHHHHHh
Confidence 99999999997 457899999999999999874
No 7
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=39.70 E-value=12 Score=26.64 Aligned_cols=19 Identities=37% Similarity=0.686 Sum_probs=15.6
Q ss_pred eCCCC---CCCHHHHHHHHHHH
Q 034617 64 EAPKG---YPPRDEIVNGYVKT 82 (89)
Q Consensus 64 d~P~~---~psr~emId~YvkT 82 (89)
..|.| .||-||+|.+|.+-
T Consensus 14 ~LPpGfRF~PTDeELV~~YL~~ 35 (174)
T 3ulx_A 14 NLPPGFRFHPTDDELVEHYLCR 35 (174)
T ss_dssp TCCTTCCCCCCHHHHHHHTHHH
T ss_pred CCCCcceeCCCHHHHHHHHHHH
Confidence 34666 89999999999865
No 8
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=37.78 E-value=16 Score=25.77 Aligned_cols=19 Identities=32% Similarity=0.735 Sum_probs=15.8
Q ss_pred eCCCC---CCCHHHHHHHHHHH
Q 034617 64 EAPKG---YPPRDEIVNGYVKT 82 (89)
Q Consensus 64 d~P~~---~psr~emId~YvkT 82 (89)
..|.| .||-||+|.+|.+-
T Consensus 16 ~lPpGfRF~PTDeELv~~YL~~ 37 (171)
T 1ut7_A 16 SLPPGFRFYPTDEELMVQYLCR 37 (171)
T ss_dssp CCCTTEEECCCHHHHHHHTHHH
T ss_pred CCCCcceeCCChHHHHHHHHHH
Confidence 45777 89999999999864
No 9
>1f8p_A Neuropeptide Y (PNPY); helix; NMR {Synthetic} SCOP: j.6.1.1 PDB: 1ron_A 1fvn_A* 1icy_A 1tz4_A 2oon_A
Probab=37.11 E-value=17 Score=20.84 Aligned_cols=18 Identities=17% Similarity=0.438 Sum_probs=14.0
Q ss_pred eCCCCCCCHHHHHHHHHH
Q 034617 64 EAPKGYPPRDEIVNGYVK 81 (89)
Q Consensus 64 d~P~~~psr~emId~Yvk 81 (89)
+.|++..+.|||..+|.+
T Consensus 6 ~~Pg~~a~pEela~Y~~~ 23 (37)
T 1f8p_A 6 DNPGEDAPAEDLARYYSA 23 (37)
T ss_dssp CCCCSSCTTTTHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHH
Confidence 346678999999988754
No 10
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=25.87 E-value=29 Score=23.55 Aligned_cols=20 Identities=15% Similarity=0.195 Sum_probs=10.9
Q ss_pred CcCCccccCCCcceeEEEEeCCCC
Q 034617 45 TRLPSLLEGCDYKHWLVVMEAPKG 68 (89)
Q Consensus 45 tr~~~Lf~GcDy~HWLVvMd~P~~ 68 (89)
|+..++|+- .+++++|+|.|
T Consensus 2 ~~~~ilyed----~~~lvvnKP~G 21 (189)
T 2oml_A 2 TRRKPENQP----TRVILFNKPYD 21 (189)
T ss_dssp ------CCC----CCEEEEEECTT
T ss_pred CccccccCC----CeEEEEECCCC
Confidence 456677763 45789999998
No 11
>2oix_A Xanthomonas outer protein D; CLAN CE family 48 cysteine protease, type III secreted effec desumoylating enzyme; 1.80A {Xanthomonas euvesicatoria} PDB: 2oiv_A
Probab=24.74 E-value=60 Score=22.21 Aligned_cols=23 Identities=22% Similarity=0.341 Sum_probs=17.4
Q ss_pred cCCccccCCC-ccee-EEEEeCCCC
Q 034617 46 RLPSLLEGCD-YKHW-LVVMEAPKG 68 (89)
Q Consensus 46 r~~~Lf~GcD-y~HW-LVvMd~P~~ 68 (89)
.+-+++|=++ ..|| |+++|.|+.
T Consensus 62 ~~~i~iPin~~~~HWsLlvi~~~~~ 86 (186)
T 2oix_A 62 PPIVFLPINQPNAHWSLLVVDRRNK 86 (186)
T ss_dssp CSEEEEEEEETTTEEEEEEEECSST
T ss_pred cCEEEEEEeCCCCccEEEEEECCCC
Confidence 5567888887 7899 567787764
No 12
>3g21_A GAG polyprotein, capsid protein; alpha-helical bundle, virion, viral protein, retrovirus; 0.90A {Rous sarcoma virus} PDB: 3g1i_A 3g28_A 3g29_A 3g26_A 3g0v_A
Probab=23.29 E-value=44 Score=21.62 Aligned_cols=16 Identities=25% Similarity=0.347 Sum_probs=13.2
Q ss_pred CCCCCCCHHHHHHHHH
Q 034617 65 APKGYPPRDEIVNGYV 80 (89)
Q Consensus 65 ~P~~~psr~emId~Yv 80 (89)
-|++.++++|||.+-.
T Consensus 59 l~~~~~~~~e~ik~~~ 74 (77)
T 3g21_A 59 APSTLTTPGEIIKYVL 74 (77)
T ss_dssp SCTTCCSHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHH
Confidence 4788999999998754
No 13
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=23.02 E-value=83 Score=16.91 Aligned_cols=19 Identities=21% Similarity=0.354 Sum_probs=14.5
Q ss_pred CCHHHHHHHHHHHHHHhhC
Q 034617 70 PPRDEIVNGYVKTLASALG 88 (89)
Q Consensus 70 psr~emId~YvkTLAkVLG 88 (89)
-.|++++..-.+.++++||
T Consensus 15 eqk~~l~~~lt~~l~~~lg 33 (64)
T 3abf_A 15 EKKRELVRRLTEMASRLLG 33 (64)
T ss_dssp HHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhC
Confidence 3466788888888888887
No 14
>2iru_A Putative DNA ligase-like protein RV0938/MT0965; polymerase, primase, NHEJ, transferase; 1.65A {Mycobacterium tuberculosis} PDB: 2irx_A* 2iry_A* 2r9l_A* 3pky_A*
Probab=22.92 E-value=31 Score=26.90 Aligned_cols=17 Identities=18% Similarity=0.341 Sum_probs=14.2
Q ss_pred CCCCCCHHHHHHHHHHH
Q 034617 66 PKGYPPRDEIVNGYVKT 82 (89)
Q Consensus 66 P~~~psr~emId~YvkT 82 (89)
|+...||.|.++||.+.
T Consensus 23 P~~G~TK~dl~~YY~~V 39 (303)
T 2iru_A 23 PATGTTKSDIFDYYAGV 39 (303)
T ss_dssp TTTTEEHHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHH
Confidence 55568999999999875
No 15
>2l60_A Peptide YY; GPCR ligand, hormone; NMR {Synthetic}
Probab=22.82 E-value=30 Score=20.18 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=13.8
Q ss_pred CCCCCCCHHHHHHHHHH
Q 034617 65 APKGYPPRDEIVNGYVK 81 (89)
Q Consensus 65 ~P~~~psr~emId~Yvk 81 (89)
.|++..|+|||..+|.+
T Consensus 11 ~Pg~~aspEela~Y~~~ 27 (41)
T 2l60_A 11 RELKKLSPEELNRYYAS 27 (41)
T ss_dssp HHHTTSCHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH
Confidence 36678999999998865
No 16
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=20.23 E-value=73 Score=18.83 Aligned_cols=14 Identities=29% Similarity=0.736 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHH
Q 034617 72 RDEIVNGYVKTLAS 85 (89)
Q Consensus 72 r~emId~YvkTLAk 85 (89)
|+||||+..+-|.+
T Consensus 28 K~EIIeAi~~El~~ 41 (45)
T 1use_A 28 KEEIIEAFVQELRK 41 (45)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 68889888887765
Done!