BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034618
(89 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1WFZ|A Chain A, Solution Structure Of Iron-Sulfur Cluster Protein U (Iscu)
Length = 130
Score = 89.0 bits (219), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 47/53 (88%)
Query: 19 ATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+
Sbjct: 69 ATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 121
>pdb|3LVL|A Chain A, Crystal Structure Of E.Coli Iscs-Iscu Complex
Length = 129
Score = 82.8 bits (203), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TEWVKGK + E +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct: 75 TEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 126
>pdb|2KQK|A Chain A, Solution Structure Of Apo-Iscu(D39a)
Length = 128
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TEWVKGK + E +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct: 74 TEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125
>pdb|2L4X|A Chain A, Solution Structure Of Apo-Iscu(Wt)
Length = 128
Score = 82.8 bits (203), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TEWVKGK + E +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct: 74 TEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125
>pdb|1Q48|A Chain A, Solution Nmr Structure Of The Haemophilus Influenzae Iron-
Sulfur Cluster Assembly Protein U (Iscu) With Zinc Bound
At The Active Site. Northeast Structural Genomics
Consortium Target Ir24. This Protein Is Not Apo, It Is A
Model Without Zinc Binding Constraints.
pdb|1R9P|A Chain A, Solution Nmr Structure Of The Haemophilus Influenzae Iron-
Sulfur Cluster Assembly Protein U (Iscu) With Zinc Bound
At The Active Site. Northeast Structural Genomics
Consortium Target Ir24
Length = 134
Score = 80.9 bits (198), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 46/52 (88%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TEWVKGK ++E +IKN++IA+ L LPPVK+HCS+LAEDAIKAA+ DY+AK+
Sbjct: 74 TEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKQ 125
>pdb|4EB5|C Chain C, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB5|D Chain D, A. Fulgidus Iscs-Iscu Complex Structure
pdb|4EB7|C Chain C, A. Fulgidus Iscs-Iscu Complex Structure
Length = 153
Score = 49.7 bits (117), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Query: 19 ATEWVKGKQIQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAKRTK 73
ATE KGK I+E L I +A+ L LP K+HCS LA DA++ A+ DY K K
Sbjct: 68 ATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVDYFRKNGK 123
>pdb|2Z7E|A Chain A, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
[2fe- 2s] Cluster
pdb|2Z7E|B Chain B, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
[2fe- 2s] Cluster
pdb|2Z7E|C Chain C, Crystal Structure Of Aquifex Aeolicus Iscu With Bound
[2fe- 2s] Cluster
Length = 157
Score = 46.2 bits (108), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAKRTK 73
TE VKGK IQ L++ +I + L LPP K+HC+ L + + A+KDY K+ +
Sbjct: 74 TEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQGR 128
>pdb|2NN6|G Chain G, Structure Of The Human Rna Exosome Composed Of Rrp41,
Rrp45, Rrp46, Rrp43, Mtr3, Rrp42, Csl4, Rrp4, And Rrp40
Length = 289
Score = 25.4 bits (54), Expect = 9.5, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 22 WVKGKQIQEVLSIKNT-EIAKHLSLPPVKLHCSMLAE 57
WVK K IQ+ L + N E +H++ K S LAE
Sbjct: 252 WVKAKTIQQTLILANILEACEHMTSDQRKQIFSRLAE 288
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.129 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,938,983
Number of Sequences: 62578
Number of extensions: 51218
Number of successful extensions: 121
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 112
Number of HSP's gapped (non-prelim): 9
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)