BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034618
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O49627|ISU1_ARATH Iron-sulfur cluster assembly protein 1 OS=Arabidopsis thaliana
GN=ISU1 PE=2 SV=1
Length = 167
Score = 104 bits (259), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 51/72 (70%), Positives = 60/72 (83%)
Query: 15 SNVSATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKP 74
S+ ATEWVKGK +++VL+IKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDY+ KR K
Sbjct: 96 SSSVATEWVKGKAMEDVLTIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYKEKRVKT 155
Query: 75 SAASEAEPAPRA 86
+ A+ A +A
Sbjct: 156 NGAAAAGETTQA 167
>sp|O81433|ISU3_ARATH Iron-sulfur cluster assembly protein 3 OS=Arabidopsis thaliana
GN=ISU3 PE=2 SV=1
Length = 171
Score = 96.3 bits (238), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 43/55 (78%), Positives = 52/55 (94%)
Query: 19 ATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTK 73
ATEWVKGK ++EVL+IKN++IAKHLSLPPVKLHCSMLAEDAIKAA+K+Y+ K+ K
Sbjct: 98 ATEWVKGKSVEEVLTIKNSQIAKHLSLPPVKLHCSMLAEDAIKAAIKNYKEKQDK 152
>sp|Q9MAB6|ISU2_ARATH Iron-sulfur cluster assembly protein 2 OS=Arabidopsis thaliana
GN=ISU2 PE=2 SV=1
Length = 163
Score = 93.6 bits (231), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 52/61 (85%)
Query: 21 EWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAASEA 80
EW+KGK + EV++IKN EIAKHL LPPVKLHCSMLAEDAIK+AV+DY+ K+ K +AA+
Sbjct: 99 EWIKGKTLDEVMTIKNAEIAKHLRLPPVKLHCSMLAEDAIKSAVRDYKEKQAKTNAAAAE 158
Query: 81 E 81
E
Sbjct: 159 E 159
>sp|Q6BGU0|ISU1_DEBHA Iron sulfur cluster assembly protein 1, mitochondrial
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=ISU1 PE=3 SV=1
Length = 179
Score = 88.6 bits (218), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 45/66 (68%), Positives = 52/66 (78%), Gaps = 2/66 (3%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT--KPSAA 77
TE VKGK I+E + IKNT IAK LSLPPVKLHCSMLAEDAIK+AVKDY +KR+ +P+
Sbjct: 109 TELVKGKTIEEAVKIKNTAIAKELSLPPVKLHCSMLAEDAIKSAVKDYRSKRSVKQPTLG 168
Query: 78 SEAEPA 83
EA A
Sbjct: 169 PEAAQA 174
>sp|Q9D7P6|ISCU_MOUSE Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Mus
musculus GN=Iscu PE=1 SV=1
Length = 168
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 15 SNVSATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
S+ ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+
Sbjct: 102 SSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 158
>sp|Q9H1K1|ISCU_HUMAN Iron-sulfur cluster assembly enzyme ISCU, mitochondrial OS=Homo
sapiens GN=ISCU PE=1 SV=2
Length = 167
Score = 87.8 bits (216), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/57 (71%), Positives = 49/57 (85%)
Query: 15 SNVSATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
S+ ATEWVKGK ++E L+IKNT+IAK L LPPVKLHCSMLAEDAIKAA+ DY+ K+
Sbjct: 101 SSSLATEWVKGKTVEEALTIKNTDIAKELCLPPVKLHCSMLAEDAIKAALADYKLKQ 157
>sp|Q6CRQ9|ISU1_KLULA Iron sulfur cluster assembly protein 1, mitochondrial
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=ISU1 PE=3
SV=1
Length = 180
Score = 87.0 bits (214), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 46/52 (88%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TE V+GK +++ IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY+AKR
Sbjct: 123 TELVRGKTLEDAAKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYQAKR 174
>sp|Q9ZD61|NIFU_RICPR NifU-like protein OS=Rickettsia prowazekii (strain Madrid E)
GN=nifU PE=3 SV=1
Length = 131
Score = 85.9 bits (211), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 45/52 (86%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TEW+KGK +++ IKNTEIAK LSLPPVKLHCS+LAEDAIKAA+ DY+ KR
Sbjct: 74 TEWIKGKSVEDAKEIKNTEIAKELSLPPVKLHCSLLAEDAIKAAIADYKQKR 125
>sp|Q03020|ISU1_YEAST Iron sulfur cluster assembly protein 1, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=ISU1 PE=1 SV=1
Length = 165
Score = 85.5 bits (210), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 40/59 (67%), Positives = 47/59 (79%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAAS 78
TE V+G + + IKNTEIAK LSLPPVKLHCSMLAEDAIKAA+KDY++KR P+ S
Sbjct: 107 TELVQGMTLDDAAKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKSKRNTPTMLS 165
>sp|Q12056|ISU2_YEAST Iron sulfur cluster assembly protein 2, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=ISU2 PE=1 SV=1
Length = 156
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/52 (75%), Positives = 44/52 (84%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TE V+G + E + IKNTEIAK LSLPPVKLHCSMLAEDAIKAA+KDY+ KR
Sbjct: 99 TELVRGMSLDEAVKIKNTEIAKELSLPPVKLHCSMLAEDAIKAAIKDYKTKR 150
>sp|B0YLW7|ISU1_TRAHO Iron sulfur cluster assembly protein 1 OS=Trachipleistophora
hominis GN=ISU1 PE=3 SV=1
Length = 138
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 43/52 (82%)
Query: 19 ATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAK 70
ATEW+KGK I + L I N +IAK LSLPPVKLHCSMLAEDAIKAA+ DY+ K
Sbjct: 84 ATEWIKGKSISDSLKITNKDIAKKLSLPPVKLHCSMLAEDAIKAAISDYQKK 135
>sp|Q75C07|ISU1_ASHGO Iron sulfur cluster assembly protein 1, mitochondrial OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=ISU1 PE=3 SV=1
Length = 154
Score = 83.2 bits (204), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 44/52 (84%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TE V+GK + + IKNTEIA+ LSLPPVKLHCSMLAEDAIKAA+KDY +KR
Sbjct: 97 TELVRGKTLADAEKIKNTEIARELSLPPVKLHCSMLAEDAIKAAIKDYRSKR 148
>sp|P0ACD7|NIFU_SHIFL NifU-like protein OS=Shigella flexneri GN=nifU PE=3 SV=1
Length = 128
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TEWVKGK + E +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct: 74 TEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125
>sp|P0ACD4|NIFU_ECOLI NifU-like protein OS=Escherichia coli (strain K12) GN=nifU PE=1
SV=1
Length = 128
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TEWVKGK + E +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct: 74 TEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125
>sp|P0ACD5|NIFU_ECOL6 NifU-like protein OS=Escherichia coli O6:H1 (strain CFT073 / ATCC
700928 / UPEC) GN=nifU PE=3 SV=1
Length = 128
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TEWVKGK + E +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct: 74 TEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125
>sp|P0ACD6|NIFU_ECO57 NifU-like protein OS=Escherichia coli O157:H7 GN=nifU PE=1 SV=1
Length = 128
Score = 82.4 bits (202), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 45/52 (86%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TEWVKGK + E +IKNT+IA+ L LPPVK+HCS+LAEDAIKAA+ DY++KR
Sbjct: 74 TEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKR 125
>sp|Q6FJY3|ISU1_CANGA Iron sulfur cluster assembly protein 1, mitochondrial OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=ISU1 PE=3 SV=1
Length = 213
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/53 (71%), Positives = 43/53 (81%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT 72
TE V G + + IKNT IAK LSLPPVKLHCSMLAEDAIKAA+KDY++KRT
Sbjct: 155 TELVHGMTLDDAAKIKNTTIAKELSLPPVKLHCSMLAEDAIKAAIKDYKSKRT 207
>sp|O51885|NIFU_BUCAP NifU-like protein OS=Buchnera aphidicola subsp. Schizaphis graminum
(strain Sg) GN=nifU PE=3 SV=1
Length = 128
Score = 80.5 bits (197), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/54 (64%), Positives = 44/54 (81%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTK 73
TEW+KGK I E +IKNT I + L LPPVK+HCS+LAEDAIKAA+ DY++K+ K
Sbjct: 74 TEWIKGKSITEAEAIKNTSIVEELELPPVKIHCSILAEDAIKAAISDYKSKKNK 127
>sp|Q57074|NIFU_HAEIN NifU-like protein OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=nifU PE=1 SV=2
Length = 126
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 46/52 (88%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TEWVKGK ++E +IKN++IA+ L LPPVK+HCS+LAEDAIKAA+ DY+AK+
Sbjct: 74 TEWVKGKSLEEAGAIKNSQIAEELELPPVKVHCSILAEDAIKAAIADYKAKQ 125
>sp|P57658|NIFU_BUCAI NifU-like protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum
(strain APS) GN=nifU PE=3 SV=1
Length = 127
Score = 80.1 bits (196), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 36/52 (69%), Positives = 43/52 (82%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TEWVKGK I+E SIKNT I + L LPPVK+HCS+LAEDAIKAA+ DY+ K+
Sbjct: 74 TEWVKGKSIEEAESIKNTTIVEELDLPPVKIHCSILAEDAIKAAISDYKRKK 125
>sp|Q6CFQ0|ISU1_YARLI Iron sulfur cluster assembly protein 1, mitochondrial OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=ISU1 PE=3 SV=1
Length = 181
Score = 79.7 bits (195), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 37/52 (71%), Positives = 42/52 (80%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TE V+GK + E IKNT IAK LSLPPVKLHCSMLAEDAIK+A+ DY +KR
Sbjct: 108 TELVRGKSLAEAGKIKNTVIAKELSLPPVKLHCSMLAEDAIKSAISDYNSKR 159
>sp|Q8SSM2|ISU1_ENCCU Iron sulfur cluster assembly protein 1 OS=Encephalitozoon cuniculi
(strain GB-M1) GN=ISU1 PE=3 SV=1
Length = 140
Score = 79.3 bits (194), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 44/57 (77%), Gaps = 1/57 (1%)
Query: 19 ATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPS 75
ATEW+K K I E L I N +IAK LSLPP+KLHCSMLAEDAIK A+KD+ + KPS
Sbjct: 84 ATEWIKKKTIDESLKISNRDIAKKLSLPPIKLHCSMLAEDAIKMAIKDF-LDKNKPS 139
>sp|Q9UTC6|ISU1_SCHPO Iron sulfur cluster assembly protein 1, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=isu1 PE=1 SV=1
Length = 192
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 42/55 (76%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKP 74
T VKG ++E IKNT+IAK L LPPVKLHCSMLAEDAIK+AVK Y +K+ P
Sbjct: 125 TTMVKGMTLEEASKIKNTQIAKELCLPPVKLHCSMLAEDAIKSAVKHYRSKQLTP 179
>sp|Q89A18|NIFU_BUCBP NifU-like protein OS=Buchnera aphidicola subsp. Baizongia pistaciae
(strain Bp) GN=nifU PE=3 SV=1
Length = 126
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 34/52 (65%), Positives = 42/52 (80%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKR 71
TEW+KGK + E +IKNT IA+ L LPPVK+HCS+LAEDAIKAA+ DY+ K
Sbjct: 74 TEWIKGKSLIEAENIKNTNIAEELDLPPVKIHCSILAEDAIKAAITDYKNKN 125
>sp|P05340|NIFU_AZOVI Nitrogen fixation protein NifU OS=Azotobacter vinelandii GN=nifU
PE=3 SV=2
Length = 312
Score = 51.6 bits (122), Expect = 2e-06, Method: Composition-based stats.
Identities = 25/57 (43%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 15 SNVSATEWVKGKQIQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAK 70
S+ + TE VKG + E L I N +IA +L LPP K+HCS++ +A++AAV +Y +
Sbjct: 68 SSSALTEMVKGLTLDEALKISNQDIADYLDGLPPEKMHCSVMGREALQAAVANYRGE 124
>sp|O67045|NIFU_AQUAE NifU-like protein OS=Aquifex aeolicus (strain VF5) GN=nifU PE=1
SV=1
Length = 157
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/61 (40%), Positives = 37/61 (60%), Gaps = 1/61 (1%)
Query: 20 TEWVKGKQIQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSAAS 78
TE VKGK IQ L++ +I + L LPP K+HC+ L + + A+KDY K+ + AS
Sbjct: 74 TEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQGRVEEAS 133
Query: 79 E 79
+
Sbjct: 134 K 134
>sp|P20628|NIFU_NOSS1 Nitrogen fixation protein NifU OS=Nostoc sp. (strain PCC 7120 /
UTEX 2576) GN=nifU PE=3 SV=1
Length = 300
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 4/68 (5%)
Query: 15 SNVSATEWVKGKQIQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAKRTK 73
S+ + TE +KG + E L + N +IA +L LP K+HCS++ ++A++AA+ +Y R
Sbjct: 74 SSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNY---RGI 130
Query: 74 PSAASEAE 81
P AA + +
Sbjct: 131 PLAAHDED 138
>sp|Q43885|NIFU_TRIAZ Nitrogen fixation protein NifU OS=Trichormus azollae GN=nifU PE=3
SV=1
Length = 300
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 42/68 (61%), Gaps = 4/68 (5%)
Query: 15 SNVSATEWVKGKQIQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAKRTK 73
S+ + TE +KG + E L + N +IA +L LP K+HCS++ ++A++AA+ +Y R
Sbjct: 74 SSSALTEMIKGLTLDEALKVSNKDIADYLGGLPEAKMHCSVMGQEALEAAIYNY---RGI 130
Query: 74 PSAASEAE 81
P A + E
Sbjct: 131 PLATHDDE 138
>sp|P05343|NIFU_KLEPN Nitrogen fixation protein NifU OS=Klebsiella pneumoniae GN=nifU
PE=3 SV=2
Length = 274
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 37/57 (64%), Gaps = 1/57 (1%)
Query: 15 SNVSATEWVKGKQIQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAK 70
S+ + TE + G + E I N +IA +L LPP K+HCS++ ++A++AA+ ++ +
Sbjct: 68 SSSALTELIIGHTLAEAGQITNQQIADYLDGLPPEKMHCSVMGQEALRAAIANFRGE 124
>sp|P23121|NIFU_AZOCH Nitrogen fixation protein NifU OS=Azotobacter chroococcum mcd 1
GN=nifU PE=3 SV=1
Length = 309
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 22/60 (36%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 15 SNVSATEWVKGKQIQEVLSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAKRTK 73
S+ + TE VKG + + L I N +IA L LP K+HCS++ + ++AAV +Y + +
Sbjct: 68 SSSALTEMVKGADLDDALKISNRDIAHFLGRLPREKMHCSVMGRERLQAAVANYRGEELR 127
>sp|Q43909|NIFU_AZOBR Nitrogen fixation protein NifU OS=Azospirillum brasilense GN=nifU
PE=3 SV=2
Length = 310
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 35/53 (66%), Gaps = 2/53 (3%)
Query: 20 TEWVKGKQIQEVLS-IKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEAK 70
TE + GK + E L + N +IA++L LPP K+ CS++ +A+ AA+ +++ +
Sbjct: 74 TEMIIGKTVDEALGQVTNRDIAEYLGGLPPEKMDCSVMGAEALPAAIANFKGE 126
>sp|Q00241|NIFU_PLEBO Nitrogen fixation protein NifU (Fragment) OS=Plectonema boryanum
GN=nifU PE=3 SV=1
Length = 205
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 26/37 (70%), Gaps = 1/37 (2%)
Query: 32 LSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDY 67
L++ N +IA L LP K+HCS++ ++A++AA+ Y
Sbjct: 2 LNVSNQDIAAFLGGLPEAKMHCSVMGQEALEAAIFKY 38
>sp|P26247|NIFU_NOSCO Nitrogen fixation protein NifU (Fragment) OS=Nostoc commune
GN=nifU PE=3 SV=1
Length = 75
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 32 LSIKNTEIAKHLS-LPPVKLHCSMLAEDAIKAAVKDYEA 69
L + +IA +L LP K+HCS++ ++A++AA+ Y
Sbjct: 2 LKVSMKDIADYLGGLPEAKMHCSVMGQEALEAAIYWYRG 40
>sp|Q1AWB1|MNMA_RUBXD Bifunctional protein NifU/MnmA OS=Rubrobacter xylanophilus (strain
DSM 9941 / NBRC 16129) GN=nifU/mnmA PE=3 SV=1
Length = 488
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Query: 21 EWVKGKQIQEVLSIKNTEIAKHLS--LPPVKLHCSMLAEDAIKAAVKDYEAKR 71
E +G+ I I +I + L LPP K H + LA DA+ A +DY +++
Sbjct: 74 ELAEGRSITGAAQISRGDIQEALGGPLPPGKEHGATLALDALHRAFEDYWSRQ 126
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.125 0.350
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 29,979,852
Number of Sequences: 539616
Number of extensions: 882262
Number of successful extensions: 2288
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 2253
Number of HSP's gapped (non-prelim): 39
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)