Query 034618
Match_columns 89
No_of_seqs 127 out of 1022
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 07:20:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3lvl_A NIFU-like protein; prot 99.9 1.2E-27 4E-32 162.3 7.7 72 1-73 57-128 (129)
2 4eb5_C NIFU protein (NIFU-1); 99.9 4E-27 1.4E-31 164.3 7.6 75 1-76 51-126 (153)
3 2z7e_A ISCU protein, NIFU-like 99.9 6.4E-26 2.2E-30 158.6 5.4 73 1-74 56-129 (157)
4 2qq4_A Iron-sulfur cluster bio 99.9 3.9E-22 1.3E-26 136.2 5.5 64 1-65 57-138 (138)
5 1xjs_A NIFU-like protein; SR17 99.8 3.2E-22 1.1E-26 138.0 3.3 68 1-69 59-145 (147)
6 1su0_B NIFU like protein ISCU; 99.8 7.7E-22 2.6E-26 137.8 3.8 66 1-67 58-142 (159)
7 1ni7_A ER75, hypothetical prot 93.0 0.26 9E-06 33.7 5.9 52 13-68 89-144 (155)
8 3g0m_A Cysteine desulfuration 90.6 0.45 1.6E-05 31.9 4.9 51 13-67 82-136 (141)
9 1i4j_A 50S ribosomal protein L 89.0 0.91 3.1E-05 29.1 5.2 49 16-74 17-65 (110)
10 2ftc_M Mitochondrial ribosomal 88.1 1.1 3.9E-05 28.7 5.2 48 17-74 14-61 (110)
11 3r8s_S 50S ribosomal protein L 88.0 1.3 4.5E-05 28.4 5.5 48 17-74 18-65 (110)
12 2zkr_r 60S ribosomal protein L 77.8 5.8 0.0002 27.8 5.7 55 16-70 29-105 (184)
13 1dd4_C 50S ribosomal protein L 76.9 3.1 0.0001 22.4 3.2 29 18-47 5-33 (40)
14 1wlo_A SUFE protein; structura 76.4 0.96 3.3E-05 30.1 1.3 51 13-68 76-130 (136)
15 2zjr_P 50S ribosomal protein L 74.5 2 6.8E-05 28.6 2.5 47 16-72 38-84 (134)
16 1fs1_B SKP1, cyclin A/CDK2-ass 74.0 2.3 7.8E-05 27.8 2.7 23 14-36 112-134 (141)
17 3j21_S 50S ribosomal protein L 72.2 7.6 0.00026 26.4 5.1 54 17-70 33-105 (155)
18 1vq8_R 50S ribosomal protein L 71.6 9.1 0.00031 26.0 5.3 55 16-70 29-103 (155)
19 2ast_A S-phase kinase-associat 68.0 3.8 0.00013 27.1 2.8 23 14-36 117-139 (159)
20 3v7d_A Suppressor of kinetocho 65.6 4.1 0.00014 27.5 2.6 22 15-36 125-146 (169)
21 2p1m_A SKP1-like protein 1A; F 63.7 3.7 0.00013 27.3 2.0 23 14-36 116-138 (160)
22 3mbh_A Putative phosphomethylp 61.5 4.9 0.00017 28.8 2.5 35 3-41 220-254 (291)
23 3h74_A Pyridoxal kinase; PSI-I 57.5 7 0.00024 27.9 2.7 33 2-38 209-241 (282)
24 3pzs_A PM kinase, pyridoxamine 55.8 7.8 0.00027 27.4 2.7 32 3-38 221-252 (289)
25 3rm5_A Hydroxymethylpyrimidine 54.6 8.6 0.00029 30.2 3.0 37 2-42 236-272 (550)
26 3iz5_V 60S ribosomal protein L 52.5 24 0.0008 24.3 4.6 54 17-70 30-106 (171)
27 3bbo_U Ribosomal protein L22; 52.3 6.8 0.00023 27.9 1.9 46 19-74 49-94 (199)
28 3u5e_P L20A, YL17, 60S ribosom 50.9 19 0.00065 25.1 4.0 54 17-70 30-105 (184)
29 3zs7_A Pyridoxal kinase; trans 50.9 9.4 0.00032 27.5 2.5 36 3-43 224-259 (300)
30 4a17_Q RPL17, 60S ribosomal pr 49.7 16 0.00054 25.6 3.4 54 17-70 32-107 (183)
31 2i5b_A Phosphomethylpyrimidine 41.4 16 0.00056 25.0 2.5 32 3-38 211-242 (271)
32 2zqe_A MUTS2 protein; alpha/be 39.2 10 0.00035 22.7 1.0 49 23-72 9-59 (83)
33 1zav_U 50S ribosomal protein L 37.3 18 0.00061 18.1 1.6 23 19-42 6-28 (30)
34 1ub0_A THID, phosphomethylpyri 35.7 20 0.0007 24.3 2.2 30 4-37 206-235 (258)
35 1jxh_A Phosphomethylpyrimidine 35.5 18 0.00061 25.3 1.9 31 3-37 230-260 (288)
36 2ddm_A Pyridoxine kinase; pyri 35.1 25 0.00085 24.3 2.6 30 4-37 229-258 (283)
37 4du5_A PFKB; structural genomi 34.2 23 0.00079 25.2 2.3 29 5-37 282-310 (336)
38 2nwh_A AGR_C_3442P, carbohydra 31.1 34 0.0012 24.0 2.8 31 4-38 251-281 (317)
39 1otf_A 4-oxalocrotonate tautom 29.4 28 0.00094 18.4 1.7 28 23-50 8-38 (62)
40 2yxt_A Pyridoxal kinase; beta 28.8 29 0.001 24.3 2.1 29 5-37 232-261 (312)
41 4dh4_A MIF; trimer, isomerase; 28.7 28 0.00095 21.2 1.8 27 25-51 67-96 (114)
42 3lhx_A Ketodeoxygluconokinase; 28.4 28 0.00097 24.4 2.0 23 16-38 270-292 (319)
43 4e69_A 2-dehydro-3-deoxyglucon 28.0 32 0.0011 24.4 2.2 22 16-37 283-304 (328)
44 1rkd_A Ribokinase; carbohydrat 27.7 33 0.0011 23.8 2.2 30 5-38 252-281 (309)
45 1vm7_A Ribokinase; TM0960, str 27.6 33 0.0011 24.1 2.2 30 5-38 255-284 (311)
46 2qhp_A Fructokinase; NP_810670 27.1 32 0.0011 23.6 2.0 23 15-37 250-272 (296)
47 3pl2_A Sugar kinase, ribokinas 26.6 35 0.0012 23.8 2.2 30 6-37 261-290 (319)
48 2jg5_A Fructose 1-phosphate ki 26.6 36 0.0012 23.5 2.2 23 15-37 252-274 (306)
49 2c4e_A Sugar kinase MJ0406; tr 26.6 36 0.0012 23.7 2.2 24 15-38 250-273 (302)
50 2opa_A Probable tautomerase YW 26.4 34 0.0012 18.0 1.7 29 23-51 8-39 (61)
51 2qcv_A Putative 5-dehydro-2-de 25.4 38 0.0013 23.7 2.2 24 15-38 276-299 (332)
52 3cqd_A 6-phosphofructokinase i 25.2 39 0.0013 23.4 2.2 31 6-38 252-282 (309)
53 1vk4_A PFKB carbohydrate kinas 25.1 40 0.0014 23.5 2.2 30 6-37 242-272 (298)
54 1hfo_A Migration inhibitory fa 25.0 34 0.0012 20.6 1.7 28 24-51 65-95 (113)
55 1uiz_A MIF, macrophage migrati 24.8 35 0.0012 20.6 1.7 28 24-51 66-96 (115)
56 3ry0_A Putative tautomerase; o 24.7 25 0.00087 19.2 0.9 28 23-50 8-38 (65)
57 2os5_A Acemif; macrophage migr 23.8 39 0.0013 20.7 1.8 28 24-51 66-96 (119)
58 2f02_A Tagatose-6-phosphate ki 23.8 43 0.0015 23.5 2.2 23 15-37 260-282 (323)
59 3h49_A Ribokinase; transferase 23.5 44 0.0015 23.5 2.2 31 5-37 257-287 (325)
60 3umo_A 6-phosphofructokinase i 23.1 45 0.0016 23.1 2.2 30 6-37 252-281 (309)
61 3ie7_A LIN2199 protein; phosph 22.5 47 0.0016 23.2 2.2 30 6-37 249-278 (320)
62 1v1a_A 2-keto-3-deoxygluconate 22.3 48 0.0016 23.0 2.2 31 5-37 246-276 (309)
63 2afb_A 2-keto-3-deoxygluconate 22.2 45 0.0015 23.7 2.0 31 6-38 288-318 (351)
64 2fv7_A Ribokinase; structural 22.0 45 0.0015 23.6 2.0 29 5-37 275-305 (331)
65 2if6_A Hypothetical protein YI 21.3 55 0.0019 21.7 2.3 18 46-63 106-123 (186)
66 3o5t_A Dinitrogenase reductase 21.2 1.5E+02 0.0051 20.9 4.7 26 12-37 167-192 (297)
67 2zjq_5 50S ribosomal protein L 21.1 77 0.0026 20.7 2.8 30 17-47 6-35 (122)
68 3kzh_A Probable sugar kinase; 21.0 52 0.0018 23.1 2.2 31 5-37 252-282 (328)
69 2abq_A Fructose 1-phosphate ki 20.8 56 0.0019 22.6 2.3 30 6-37 245-274 (306)
70 2j01_L 50S ribosomal protein L 20.6 78 0.0027 20.8 2.8 30 17-47 6-35 (125)
71 1gyx_A YDCE, B1461, hypothetic 20.6 58 0.002 18.3 2.0 29 23-51 8-40 (76)
72 4e3a_A Sugar kinase protein; s 20.6 53 0.0018 23.6 2.2 32 4-37 294-325 (352)
73 2pkf_A Adenosine kinase; trans 20.5 54 0.0019 23.2 2.2 33 4-38 261-293 (334)
74 2x4k_A 4-oxalocrotonate tautom 20.2 64 0.0022 16.7 2.0 27 24-50 12-41 (63)
75 3ewm_A Uncharacterized sugar k 20.0 56 0.0019 22.7 2.2 32 5-38 242-275 (313)
76 2rbc_A Sugar kinase, AGR_C_456 20.0 56 0.0019 23.4 2.2 31 6-38 272-302 (343)
No 1
>3lvl_A NIFU-like protein; protein-protein complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PLP; 3.00A {Escherichia coli} PDB: 2l4x_A 2kqk_A 1q48_A 1r9p_A 1wfz_A
Probab=99.94 E-value=1.2e-27 Score=162.31 Aligned_cols=72 Identities=53% Similarity=0.817 Sum_probs=68.5
Q ss_pred CceeecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHhcCC
Q 034618 1 MNYLLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTK 73 (89)
Q Consensus 1 ~~F~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~i~e~Lglpp~Ri~CA~La~~AL~~Al~~y~~k~~~ 73 (89)
++|+|+||+|| +||+|||+|+++|||++||..|+++++.+.|||||+|+||++|+|+||++||.+|+.|++.
T Consensus 57 ~~f~~~GCais-~ASaS~~te~i~Gkt~~ea~~i~~~~i~~~L~l~p~r~~Ca~La~~Al~~Al~~y~~k~~~ 128 (129)
T 3lvl_A 57 ARFKTYGCGSA-IASSSLVTEWVKGKSLDEAQAIKNTDIAEELELPPVKIHCSILAEDAIKAAIADYKSKREA 128 (129)
T ss_dssp EEEEEESCHHH-HHHHHHHHHHHTTCCHHHHHTCCHHHHHHHHTCCGGGGHHHHHHHHHHHHHHHHHHHSCC-
T ss_pred EEEEecCCHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCCccchhHHHHHHHHHHHHHHHHHHhccC
Confidence 37999999999 9999999999999999999999999999999999999999999999999999999998753
No 2
>4eb5_C NIFU protein (NIFU-1); scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_C*
Probab=99.94 E-value=4e-27 Score=164.31 Aligned_cols=75 Identities=37% Similarity=0.525 Sum_probs=70.8
Q ss_pred CceeecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHHHHhhc-CCCCcchhhHHHHHHHHHHHHHHHHHhcCCCCC
Q 034618 1 MNYLLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAKRTKPSA 76 (89)
Q Consensus 1 ~~F~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~i~e~L-glpp~Ri~CA~La~~AL~~Al~~y~~k~~~~~~ 76 (89)
++|+|+||+|| +||+|||+++++|||++||..|+++++.+.| |+||+|+|||+|+|+||++||.+|+.|++..++
T Consensus 51 ~~F~g~GCais-~ASaS~mtelv~GKtleEA~~i~~~~i~~~L~glpp~Ri~CA~La~~AL~~Al~~y~~k~~~~~~ 126 (153)
T 4eb5_C 51 IKFQTFGCAAA-IATSSMATEMAKGKTIEEALKITRDAVAEALGGLPKQKMHCSNLAADALRRAIVDYFRKNGKIDK 126 (153)
T ss_dssp EEEEEESCHHH-HHHHHHHHHHHTTCBHHHHTTCCHHHHHHHHTCCCTTSHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred EEEEEeCcHHH-HHHHHHHHHHHcCCCHHHHHHhhHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHhcCCccH
Confidence 37999999999 9999999999999999999999999999999 799999999999999999999999999876543
No 3
>2z7e_A ISCU protein, NIFU-like protein; iron-sulfur cluster, iron, biosynthesis, [2Fe-2S], asymmetric trimer, three conserved Cys; 2.30A {Aquifex aeolicus}
Probab=99.92 E-value=6.4e-26 Score=158.57 Aligned_cols=73 Identities=33% Similarity=0.504 Sum_probs=69.3
Q ss_pred CceeecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHHHHhhc-CCCCcchhhHHHHHHHHHHHHHHHHHhcCCC
Q 034618 1 MNYLLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTEIAKHL-SLPPVKLHCSMLAEDAIKAAVKDYEAKRTKP 74 (89)
Q Consensus 1 ~~F~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~i~e~L-glpp~Ri~CA~La~~AL~~Al~~y~~k~~~~ 74 (89)
++|+|+||+|| +||+|||+++++|||++||+.|+++++.+.| ++||.|+||++|+|+||++||.+|+.+++..
T Consensus 56 ~~F~~~GCais-~ASaS~mte~v~Gkt~~EA~~i~~~~i~e~Lg~l~p~R~~Ca~La~~Al~~Al~~y~~k~~~~ 129 (157)
T 2z7e_A 56 VRFKTFGCGSA-IAVSSMLTEMVKGKPIQYALNLTYKDIFEELGGLPPQKIHCTNLGLETLHVAIKDYLMKQGRV 129 (157)
T ss_dssp EEEEEESCTTH-HHHHHHHHHHHTTSBHHHHHHCCHHHHHHHHTCCCCSSCCTTCCHHHHHHHHHHHHHHTTTCH
T ss_pred EEEEecCCHHH-HHHHHHHHHHHcCCcHHHHHHHHhccHHHHhcccCcchhHhHHHHHHHHHHHHHHHHHhcCCc
Confidence 37999999999 9999999999999999999999999999999 6999999999999999999999999888764
No 4
>2qq4_A Iron-sulfur cluster biosynthesis protein ISCU; zinc binding, iron-sulfur cluster binding, three conserved Cys, three beta strands; 1.85A {Thermus thermophilus}
Probab=99.85 E-value=3.9e-22 Score=136.25 Aligned_cols=64 Identities=27% Similarity=0.372 Sum_probs=55.4
Q ss_pred CceeecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHHH------------H---hhc-CC--CCcchhhHHHHHHHHHH
Q 034618 1 MNYLLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTEI------------A---KHL-SL--PPVKLHCSMLAEDAIKA 62 (89)
Q Consensus 1 ~~F~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~i------------~---e~L-gl--pp~Ri~CA~La~~AL~~ 62 (89)
++|+|+||+|| +||+|+|+|+++|||++||..|.+.++ . +.| |+ +|+|+||++|+|+||++
T Consensus 57 ~~f~~~GCais-~ASaS~~te~i~Gkt~~ea~~i~~~~~~ml~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca~La~~Al~~ 135 (138)
T 2qq4_A 57 IRFQGQGCAIS-TASASLMTEAVKGKKVAEALELSRKFQAMVVEGAPPDPTLGDLLALQGVAKLPARVKCATLAWHALEE 135 (138)
T ss_dssp EEEEEECCHHH-HHHHHHHHHHHTTSBHHHHHHHHHHHHHHHTTCCCCCGGGGGGGGGGGGGGCGGGHHHHHHHHHHHHH
T ss_pred EEEEecCCHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCCchhhhhHHhhccCcccCcchhhHHHHHHHHHHH
Confidence 37999999999 999999999999999999999998542 1 223 44 69999999999999999
Q ss_pred HHH
Q 034618 63 AVK 65 (89)
Q Consensus 63 Al~ 65 (89)
||+
T Consensus 136 Al~ 138 (138)
T 2qq4_A 136 ALR 138 (138)
T ss_dssp HHC
T ss_pred HhC
Confidence 973
No 5
>1xjs_A NIFU-like protein; SR17, structure, autostructure, iron-sulfur, zinc, northeast structural genomics consortium, NESG; NMR {Bacillus subtilis} SCOP: d.224.1.2 PDB: 2azh_A
Probab=99.85 E-value=3.2e-22 Score=138.01 Aligned_cols=68 Identities=24% Similarity=0.290 Sum_probs=57.8
Q ss_pred CceeecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHH--------HH--hhc-------C--CCCcchhhHHHHHHHHH
Q 034618 1 MNYLLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTE--------IA--KHL-------S--LPPVKLHCSMLAEDAIK 61 (89)
Q Consensus 1 ~~F~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~--------i~--e~L-------g--lpp~Ri~CA~La~~AL~ 61 (89)
++|+|+||+|| +||+|||+|+++|||++||..|.+.. +. +.| | .+|+|+||++|+|+||+
T Consensus 59 ~~f~~~GCais-~ASaS~mte~v~Gkt~~Ea~~i~~~~~~ml~~~~~~~~~~l~~l~~l~~v~~~p~R~~Ca~La~~Al~ 137 (147)
T 1xjs_A 59 AKFEGEGCSIS-MASASMMTQAIKGKDIETALSMSKIFSDMMQGKEYDDSIDLGDIEALQGVSKFPARIKCATLSWKALE 137 (147)
T ss_dssp EEEEEESSHHH-HHHHHHHHHHHTTSBHHHHHHHHHHHHHHHHHCSCCSSCCCHHHHHHHHHTTSTTTHHHHHHHHHHHH
T ss_pred EEEEecCCHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCCCchhhhchhhhhcCcccCcchhHHHHHHHHHHH
Confidence 37999999999 99999999999999999999998852 11 122 3 36999999999999999
Q ss_pred HHHHHHHH
Q 034618 62 AAVKDYEA 69 (89)
Q Consensus 62 ~Al~~y~~ 69 (89)
+||.+|+.
T Consensus 138 ~Al~~~e~ 145 (147)
T 1xjs_A 138 KGVAKEEG 145 (147)
T ss_dssp HHSCSTTC
T ss_pred HHHHHhhc
Confidence 99987654
No 6
>1su0_B NIFU like protein ISCU; structural genomics, BSGC structure funded by NI protein structure initiative, PSI; 2.30A {Streptococcus pyogenes} SCOP: d.224.1.2
Probab=99.84 E-value=7.7e-22 Score=137.78 Aligned_cols=66 Identities=30% Similarity=0.374 Sum_probs=56.2
Q ss_pred CceeecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHH--------HH--hhc-------CC--CCcchhhHHHHHHHHH
Q 034618 1 MNYLLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTE--------IA--KHL-------SL--PPVKLHCSMLAEDAIK 61 (89)
Q Consensus 1 ~~F~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~--------i~--e~L-------gl--pp~Ri~CA~La~~AL~ 61 (89)
++|+|+||+|| +||+|+|+++++|||++||+.|.+.. +. +.| |+ +|+|+||++|+|+||+
T Consensus 58 ~~F~~~GCais-~ASaS~mte~v~Gkt~~Ea~~i~~~f~~ml~~~~~~~~~~L~~l~~l~gv~~~p~R~~Ca~La~~Al~ 136 (159)
T 1su0_B 58 IAFAGNGCTIS-TASSSMMTDAVIGKSKEEALALADIFSEMVQGQENPAQKELGEAELLAGVAKFPQRIKCSTLAWNALK 136 (159)
T ss_dssp EEEEEECCHHH-HHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTTCCCGGGGGGGGGGGGGGGGGCHHHHHHHHHHHHHHH
T ss_pred EEEEecCCHHH-HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCCCCchhhhchhhhhcCcccCcchhHHHHHHHHHHH
Confidence 47999999999 99999999999999999999998752 11 223 33 5999999999999999
Q ss_pred HHHHHH
Q 034618 62 AAVKDY 67 (89)
Q Consensus 62 ~Al~~y 67 (89)
+||.++
T Consensus 137 ~Al~~~ 142 (159)
T 1su0_B 137 EAIKRS 142 (159)
T ss_dssp HHHTC-
T ss_pred HHHHhh
Confidence 999774
No 7
>1ni7_A ER75, hypothetical protein YGDK; RD-structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Escherichia coli} SCOP: d.224.1.1
Probab=92.99 E-value=0.26 Score=33.72 Aligned_cols=52 Identities=15% Similarity=0.099 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCCHHHHHcchhHHHHhhcC----CCCcchhhHHHHHHHHHHHHHHHH
Q 034618 13 GVSNVSATEWVKGKQIQEVLSIKNTEIAKHLS----LPPVKLHCSMLAEDAIKAAVKDYE 68 (89)
Q Consensus 13 ~ASaS~~telikGktl~Ea~~i~~~~i~e~Lg----lpp~Ri~CA~La~~AL~~Al~~y~ 68 (89)
..=.+++.+.+.|+|.+|+++++..+..+.|| |.|.|.+ ++.++-+.|+++-
T Consensus 89 kGL~AlL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSpsR~N----Gl~am~~~ik~~a 144 (155)
T 1ni7_A 89 RGLLAVLLTAVEGKTAAELQAQSPLALFDELGLRAQLSASRSQ----GLNALSEAIIAAT 144 (155)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHSCTHHHHHHHTSSSSSCHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCchHHH----HHHHHHHHHHHHH
Confidence 57788999999999999999999987777775 6899987 6666666666654
No 8
>3g0m_A Cysteine desulfuration protein SUFE; YNHA, csgid, national I of allergy and infectious diseases, niaid, hydrolase, struc genomics; 1.76A {Salmonella typhimurium LT2} SCOP: d.224.1.1 PDB: 1mzg_A
Probab=90.65 E-value=0.45 Score=31.94 Aligned_cols=51 Identities=10% Similarity=0.083 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHcCCCHHHHHcchhHHHHhhcC----CCCcchhhHHHHHHHHHHHHHHH
Q 034618 13 GVSNVSATEWVKGKQIQEVLSIKNTEIAKHLS----LPPVKLHCSMLAEDAIKAAVKDY 67 (89)
Q Consensus 13 ~ASaS~~telikGktl~Ea~~i~~~~i~e~Lg----lpp~Ri~CA~La~~AL~~Al~~y 67 (89)
..=.+++.+.+.|+|.+|++.++..+..+.|| |+|.|.+ ++.++-+.|+.+
T Consensus 82 kGl~alL~~~~~G~tp~eIl~~d~~~f~~~lGL~~~LSpsR~n----Gl~am~~~ik~~ 136 (141)
T 3g0m_A 82 KGLMAVVFILYHQMTAQDIVHFDVRPWFEKMALAQHLTPSRSQ----GLEAMIRAIRAK 136 (141)
T ss_dssp HHHHHHHHHHHTTCBHHHHHHCCCHHHHHHHTCGGGSCHHHHH----HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHhCCHHHHHHHcCchhhcCchHHH----HHHHHHHHHHHH
Confidence 56778999999999999999999976777775 6899987 566665555554
No 9
>1i4j_A 50S ribosomal protein L22; mutant, erythromycin resistance, RNA binding, RNA binding protein; 1.80A {Thermus thermophilus} SCOP: d.55.1.1 PDB: 1bxe_A 1giy_S 1ml5_s* 1vsa_Q 1vsp_Q 1yl3_S 2b66_W 2b9n_W 2b9p_W 2hgj_V 2hgq_V 2hgu_V 2j01_W 2j03_W 2jl6_W 2jl8_W 2v47_W 2v49_W 2wdi_W 2wdj_W ...
Probab=89.02 E-value=0.91 Score=29.14 Aligned_cols=49 Identities=10% Similarity=0.161 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCCHHHHHcchhHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHhcCCC
Q 034618 16 NVSATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKP 74 (89)
Q Consensus 16 aS~~telikGktl~Ea~~i~~~~i~e~Lglpp~Ri~CA~La~~AL~~Al~~y~~k~~~~ 74 (89)
+-.++++|+|++++||..+-.. ...+.|..-.+.|+.|+.+...+.+.+
T Consensus 17 ~r~va~~IrG~~v~~Al~~L~~----------~pkkaa~~v~klL~sA~aNAe~n~gld 65 (110)
T 1i4j_A 17 VRLVVDLIRGKSLEEARNILRY----------TNKRGAYFVAKVLESAAANAVNNHDAL 65 (110)
T ss_dssp HHHHHHHHTTCBHHHHHHHHHH----------CCCTTHHHHHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHcCCcHHHHHHHHHH----------CCHHHHHHHHHHHHHHHHhHHHhcCCC
Confidence 3467899999999999987765 256778999999999999988765543
No 10
>2ftc_M Mitochondrial ribosomal protein L22 isoform A; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_M
Probab=88.06 E-value=1.1 Score=28.68 Aligned_cols=48 Identities=8% Similarity=0.054 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCHHHHHcchhHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHhcCCC
Q 034618 17 VSATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKP 74 (89)
Q Consensus 17 S~~telikGktl~Ea~~i~~~~i~e~Lglpp~Ri~CA~La~~AL~~Al~~y~~k~~~~ 74 (89)
-.++++|+|++++||..+-.. ...+.|..-.+.|+.|+.+...+.+.+
T Consensus 14 r~va~~IrG~~v~eAl~~L~f----------~pkkaa~~v~klL~sA~aNA~~~~gld 61 (110)
T 2ftc_M 14 WYLAKLIRGMSIDQALAQLEF----------NDKKGAKIIKEVLLEAQDMAVRDHNVE 61 (110)
T ss_pred HHHHHHHcCCcHHHHHHHHHH----------CCHHHHHHHHHHHHHHHHhHHHhcCCC
Confidence 467899999999999987764 256788999999999999987765554
No 11
>3r8s_S 50S ribosomal protein L22; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_Q 1p86_Q 1vs8_S 1vs6_S 2aw4_S 2awb_S 1vt2_S 2i2v_S 2j28_S 2i2t_S* 2qao_S* 2qba_S* 2qbc_S* 2qbe_S 2qbg_S 2qbi_S* 2qbk_S* 2qov_S 2qox_S 2qoz_S* ...
Probab=88.03 E-value=1.3 Score=28.39 Aligned_cols=48 Identities=15% Similarity=0.317 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCHHHHHcchhHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHhcCCC
Q 034618 17 VSATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKP 74 (89)
Q Consensus 17 S~~telikGktl~Ea~~i~~~~i~e~Lglpp~Ri~CA~La~~AL~~Al~~y~~k~~~~ 74 (89)
-.++++|+|++++||..+-.- ...+.+..-.+.|+.|+.+.+.+.+.+
T Consensus 18 r~va~~IrG~~v~~Al~~L~f----------~pkkaa~~v~k~L~sA~aNAe~~~gld 65 (110)
T 3r8s_S 18 RLVADLIRGKKVSQALDILTY----------TNKKAAVLVKKVLESAIANAEHNDGAD 65 (110)
T ss_dssp HHHHHHHTTCBHHHHHHHHHH----------CCCHHHHHHHHHHHHHHHHHHHHSSCC
T ss_pred HHHHHHHcCCcHHHHHHHHhh----------CCHHHHHHHHHHHHHHHHhHHHhcCCC
Confidence 467899999999999987653 246778888999999999998876654
No 12
>2zkr_r 60S ribosomal protein L17; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=77.77 E-value=5.8 Score=27.77 Aligned_cols=55 Identities=13% Similarity=0.107 Sum_probs=40.9
Q ss_pred HHHHHHHHcCCCHHHHHcchhHHHHhhc---------CC-----------CC--cchhhHHHHHHHHHHHHHHHHHh
Q 034618 16 NVSATEWVKGKQIQEVLSIKNTEIAKHL---------SL-----------PP--VKLHCSMLAEDAIKAAVKDYEAK 70 (89)
Q Consensus 16 aS~~telikGktl~Ea~~i~~~~i~e~L---------gl-----------pp--~Ri~CA~La~~AL~~Al~~y~~k 70 (89)
+-.++++|+|+++++|..+-.+-+...- |+ +. .-.+.|..-.+.|+.|..+...+
T Consensus 29 ~r~va~~IrG~~v~~A~~~L~~V~~~k~~VPF~r~~~gvg~~~q~~~~~~~~GR~PkKaa~~ilklLksA~aNAe~k 105 (184)
T 2zkr_r 29 TRETAQAIKGMHIRKATKYLKDVTLQKQCVPFRRYNGGVGRCAQAKQWGWTQGRWPKKSAEFLLHMLKNAESNAELK 105 (184)
T ss_dssp HHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCCSTTSCSCSBEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhccccccceeccCCCcccccccccccccCCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 3457889999999999998876443211 11 11 34678999999999999998876
No 13
>1dd4_C 50S ribosomal protein L7/L12; dimer formation, flexibility, hinge region, four-helix- bundle, five-helix- bundle, alpha-beta structure; HET: TBR; 2.40A {Thermotoga maritima} SCOP: a.108.1.1
Probab=76.85 E-value=3.1 Score=22.40 Aligned_cols=29 Identities=7% Similarity=0.210 Sum_probs=24.4
Q ss_pred HHHHHHcCCCHHHHHcchhHHHHhhcCCCC
Q 034618 18 SATEWVKGKQIQEVLSIKNTEIAKHLSLPP 47 (89)
Q Consensus 18 ~~telikGktl~Ea~~i~~~~i~e~Lglpp 47 (89)
-+.+.+++.|+-|+..+... +++.+|++.
T Consensus 5 ~iie~i~~lTvlE~~eLvk~-leekfGVsa 33 (40)
T 1dd4_C 5 EIIEAIEKLTVSELAELVKK-LEDKFGVTA 33 (40)
T ss_dssp HHHHHHTTSCHHHHHHHHHH-HHHHTCCCS
T ss_pred HHHHHHHhCcHHHHHHHHHH-HHHHHCCCc
Confidence 36788999999999999876 788888864
No 14
>1wlo_A SUFE protein; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; NMR {Thermus thermophilus}
Probab=76.42 E-value=0.96 Score=30.10 Aligned_cols=51 Identities=14% Similarity=0.159 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHcCCCHHHHHcchhHHHHhhcC----CCCcchhhHHHHHHHHHHHHHHHH
Q 034618 13 GVSNVSATEWVKGKQIQEVLSIKNTEIAKHLS----LPPVKLHCSMLAEDAIKAAVKDYE 68 (89)
Q Consensus 13 ~ASaS~~telikGktl~Ea~~i~~~~i~e~Lg----lpp~Ri~CA~La~~AL~~Al~~y~ 68 (89)
..=.+++...+.|+|.+|+..++. +..+.|| |.|.|.+ ++.++-+.|+++-
T Consensus 76 kGl~alL~~~~~G~tp~eIl~~d~-~~~~~lGL~~~LSpsR~n----Gl~am~~~ik~~a 130 (136)
T 1wlo_A 76 KAFAGLLREGLEGESPEAVLEVPP-GFYRGYGLEEFFTPLRLR----GLEAALLRLQAQV 130 (136)
T ss_dssp HHHHHHHHHTTTTCCTTTTTSSCT-TTTTTTTSHHHHTHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHhCCH-HHHHHcCchhhcCchHHH----HHHHHHHHHHHHH
Confidence 567789999999999999999999 4677776 5899987 5666666666553
No 15
>2zjr_P 50S ribosomal protein L22; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.55.1.1 PDB: 1j5a_L* 1jzy_L* 1jzz_L* 1k01_L* 1nkw_Q 1nwx_Q* 1nwy_Q* 1ond_Q* 1sm1_Q* 1xbp_Q* 2zjp_P* 2zjq_P 1jzx_L 3cf5_P* 3dll_P* 3pio_P* 3pip_P* 1pnu_Q 1pny_Q 1vor_T ...
Probab=74.47 E-value=2 Score=28.62 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=37.2
Q ss_pred HHHHHHHHcCCCHHHHHcchhHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHhcC
Q 034618 16 NVSATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRT 72 (89)
Q Consensus 16 aS~~telikGktl~Ea~~i~~~~i~e~Lglpp~Ri~CA~La~~AL~~Al~~y~~k~~ 72 (89)
+-.++++|+|++++||+.+-.. ...+.|..-.+.|+.|+.+.....+
T Consensus 38 ~r~Va~~IRG~~v~eAl~~L~f----------~pkKaA~~v~klL~sA~aNAe~n~g 84 (134)
T 2zjr_P 38 VRLVVDVIRGKSVQDAEDLLRF----------IPRSASEPVAKVLNSAKANALHNDE 84 (134)
T ss_dssp HHHHHHHSTTSBHHHHHHHHHH----------CCCTTHHHHHHHHTTTHHHHTTTTC
T ss_pred HHHHHHHHcCCcHHHHHHHHHH----------CcHhHHHHHHHHHHHHHHhHHHhcC
Confidence 3467899999999999987765 2567788889999999988764333
No 16
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D
Probab=74.03 E-value=2.3 Score=27.79 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCCHHHHHcchh
Q 034618 14 VSNVSATEWVKGKQIQEVLSIKN 36 (89)
Q Consensus 14 ASaS~~telikGktl~Ea~~i~~ 36 (89)
.++-.++.+++|||.+|.+++-+
T Consensus 112 l~c~~vA~~ikgkt~eeiR~~f~ 134 (141)
T 1fs1_B 112 VTCKTVANMIKGKTPEEIRKTFN 134 (141)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHTC
T ss_pred HHHHHHHHHHcCCCHHHHHHHcC
Confidence 45667889999999999887654
No 17
>3j21_S 50S ribosomal protein L22P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=72.23 E-value=7.6 Score=26.36 Aligned_cols=54 Identities=13% Similarity=0.167 Sum_probs=39.3
Q ss_pred HHHHHHHcCCCHHHHHcchhHHHHhhcCCCC-------------------cchhhHHHHHHHHHHHHHHHHHh
Q 034618 17 VSATEWVKGKQIQEVLSIKNTEIAKHLSLPP-------------------VKLHCSMLAEDAIKAAVKDYEAK 70 (89)
Q Consensus 17 S~~telikGktl~Ea~~i~~~~i~e~Lglpp-------------------~Ri~CA~La~~AL~~Al~~y~~k 70 (89)
-.++++|+|++++||..+-..-+...--+|- --.+.+..-.+.|+.|..+.+.+
T Consensus 33 r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~gr~PkKaa~~ilklL~sA~aNAe~k 105 (155)
T 3j21_S 33 VEVCRELRGMMLNDALRYLDDVIALKRPVPLKRYNDSQGHKPGKGFGPGRYPVKVAKAIKKVLLNVKNNAVQK 105 (155)
T ss_dssp HHHHHHHTTCBHHHHHHHHHHHHHTCSCEECCSSCTTCCBCCSSSCSBEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHhcccceeeeeecCCCccccccCCCcCcCcHHHHHHHHHHHHHHHHHHHHc
Confidence 3578899999999999987764332111211 23578899999999999998764
No 18
>1vq8_R 50S ribosomal protein L22P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.55.1.1 PDB: 1vq4_R* 1vq5_R* 1vq6_R* 1vq7_R* 1s72_R* 1vq9_R* 1vqk_R* 1vql_R* 1vqm_R* 1vqn_R* 1vqo_R* 1vqp_R* 1yhq_R* 1yi2_R* 1yij_R* 1yit_R* 1yjn_R* 1yjw_R* 2otj_R* 2otl_R* ...
Probab=71.65 E-value=9.1 Score=25.98 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=40.7
Q ss_pred HHHHHHHHcCCCHHHHHcchhHHHHhh--c-------CC---------CC--cchhhHHHHHHHHHHHHHHHHHh
Q 034618 16 NVSATEWVKGKQIQEVLSIKNTEIAKH--L-------SL---------PP--VKLHCSMLAEDAIKAAVKDYEAK 70 (89)
Q Consensus 16 aS~~telikGktl~Ea~~i~~~~i~e~--L-------gl---------pp--~Ri~CA~La~~AL~~Al~~y~~k 70 (89)
+-.++++|+|++++||..+-..-+... + |+ .. .-.+.|..-.+.|+.|..+.+.+
T Consensus 29 ~r~va~~IrG~~v~~A~~~L~~V~~~k~~vPf~r~~~gvg~~~~~~~~~~gr~PkKaa~~ilklL~sA~aNAe~k 103 (155)
T 1vq8_R 29 SKAIAREIKGKTAGEAVDYLEAVIEGDQPVPFKQHNSGVGHKSKVDGWDAGRYPEKASKAFLDLLENAVGNADHQ 103 (155)
T ss_dssp HHHHHHHHTTSBHHHHHHHHHHHHHTSSCEECSSSCTTCCBCTTCSSSSBEECCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHHhcceeccceeccCCCCccccccccccCCCcHHHHHHHHHHHHHHHHHHHHc
Confidence 345788999999999999887643321 1 22 11 34678999999999999998877
No 19
>2ast_A S-phase kinase-associated protein 1A; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} PDB: 2ass_A* 2e31_B 2e32_B 3l2o_A 1p22_B* 2ovr_A* 2ovp_A 1fqv_B* 2ovq_A*
Probab=67.96 E-value=3.8 Score=27.07 Aligned_cols=23 Identities=26% Similarity=0.338 Sum_probs=19.4
Q ss_pred HHHHHHHHHHcCCCHHHHHcchh
Q 034618 14 VSNVSATEWVKGKQIQEVLSIKN 36 (89)
Q Consensus 14 ASaS~~telikGktl~Ea~~i~~ 36 (89)
.++..++.+++|||.+|.+.+.+
T Consensus 117 ~~c~~va~~i~gkt~eeir~~f~ 139 (159)
T 2ast_A 117 VTCKTVANMIKGKTPEEIRKTFN 139 (159)
T ss_dssp HHHHHHHHHHSSCCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHcC
Confidence 56678899999999999887765
No 20
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A*
Probab=65.55 E-value=4.1 Score=27.51 Aligned_cols=22 Identities=18% Similarity=0.271 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCCCHHHHHcchh
Q 034618 15 SNVSATEWVKGKQIQEVLSIKN 36 (89)
Q Consensus 15 SaS~~telikGktl~Ea~~i~~ 36 (89)
++-.++.+++|||.+|++.+.+
T Consensus 125 ~c~~vA~~ikgktpeeiR~~f~ 146 (169)
T 3v7d_A 125 GCKVVAEMIRGRSPEEIRRTFN 146 (169)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHT
T ss_pred HHHHHHHHHcCCCHHHHHHHcC
Confidence 4556788999999999987655
No 21
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A*
Probab=63.66 E-value=3.7 Score=27.30 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=18.8
Q ss_pred HHHHHHHHHHcCCCHHHHHcchh
Q 034618 14 VSNVSATEWVKGKQIQEVLSIKN 36 (89)
Q Consensus 14 ASaS~~telikGktl~Ea~~i~~ 36 (89)
.++-.++.+++|||.+|.+.+-+
T Consensus 116 l~c~~vA~~ikgkt~eeir~~f~ 138 (160)
T 2p1m_A 116 LTCQTVADMIKGKTPEEIRTTFN 138 (160)
T ss_dssp HHHHHHHHTTTTCCHHHHHHHTT
T ss_pred HHHHHHHHHHcCCCHHHHHHHcC
Confidence 45667889999999999887755
No 22
>3mbh_A Putative phosphomethylpyrimidine kinase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE PXL; 2.00A {Bacteroides thetaiotaomicron} PDB: 3mbj_A*
Probab=61.49 E-value=4.9 Score=28.76 Aligned_cols=35 Identities=20% Similarity=0.157 Sum_probs=27.4
Q ss_pred eeecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHHHHh
Q 034618 3 YLLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTEIAK 41 (89)
Q Consensus 3 F~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~i~e 41 (89)
+-|-||+.+ +.+++.+++|+++.|+...-...+..
T Consensus 220 t~GaGD~f~----aai~a~l~~g~~l~~A~~~A~~~~~~ 254 (291)
T 3mbh_A 220 YPGTGDTFT----SVITGSLMQGDSLPMALDRATQFILQ 254 (291)
T ss_dssp STTHHHHHH----HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCChHHHHH----HHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 457788887 67788889999999998887765443
No 23
>3h74_A Pyridoxal kinase; PSI-II, structural genomics, prote structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 1.30A {Lactobacillus plantarum} PDB: 3hyo_A* 3ibq_A*
Probab=57.51 E-value=7 Score=27.87 Aligned_cols=33 Identities=24% Similarity=0.088 Sum_probs=26.0
Q ss_pred ceeecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHH
Q 034618 2 NYLLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTE 38 (89)
Q Consensus 2 ~F~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~ 38 (89)
.+-|-||+.+ +.+++.+++|.+++|+...-...
T Consensus 209 dt~GaGD~fs----aai~a~l~~g~~l~~A~~~A~~~ 241 (282)
T 3h74_A 209 HYNGTGDTLA----AVIAGLLGRGYPLAPTLARANQW 241 (282)
T ss_dssp CCTTHHHHHH----HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcCHHHHHH----HHHHHHHHCCCCHHHHHHHHHHH
Confidence 3457788887 67788889999999998877754
No 24
>3pzs_A PM kinase, pyridoxamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; HET: MSE; 1.89A {Yersinia pestis} SCOP: c.72.1.5 PDB: 1td2_A* 1vi9_A*
Probab=55.81 E-value=7.8 Score=27.44 Aligned_cols=32 Identities=13% Similarity=0.102 Sum_probs=25.6
Q ss_pred eeecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHH
Q 034618 3 YLLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTE 38 (89)
Q Consensus 3 F~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~ 38 (89)
+-|-||+.+ +.++..+++|++++|+...-...
T Consensus 221 t~GaGD~f~----a~~~~~l~~g~~~~~A~~~A~~~ 252 (289)
T 3pzs_A 221 PVGVGDLTS----GLLLVNLLKGEPLDKALEHVTAA 252 (289)
T ss_dssp CTTHHHHHH----HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCcHHHHHH----HHHHHHHHCCCCHHHHHHHHHHH
Confidence 567788776 67788889999999998877653
No 25
>3rm5_A Hydroxymethylpyrimidine/phosphomethylpyrimidine K THI20; HMP kinase (THID), thiaminase II, transferase; 2.68A {Saccharomyces cerevisiae}
Probab=54.63 E-value=8.6 Score=30.24 Aligned_cols=37 Identities=11% Similarity=0.026 Sum_probs=28.3
Q ss_pred ceeecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHHHHhh
Q 034618 2 NYLLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTEIAKH 42 (89)
Q Consensus 2 ~F~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~i~e~ 42 (89)
.+-|-||+.+ +.+++.+++|+++.||...-...+...
T Consensus 236 ~t~GtGD~fs----aaiaa~La~G~~l~eAv~~A~~~v~~a 272 (550)
T 3rm5_A 236 HTHGTGCTLA----SAIASNLARGYSLPQSVYGGIEYVQNA 272 (550)
T ss_dssp CCBTHHHHHH----HHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred CCcChhHHHH----HHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4568888887 667778889999999988877655433
No 26
>3iz5_V 60S ribosomal protein L17 (L22P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_V
Probab=52.46 E-value=24 Score=24.32 Aligned_cols=54 Identities=13% Similarity=0.055 Sum_probs=39.2
Q ss_pred HHHHHHHcCCCHHHHHcchhHHHHhhc---------CC------------CC--cchhhHHHHHHHHHHHHHHHHHh
Q 034618 17 VSATEWVKGKQIQEVLSIKNTEIAKHL---------SL------------PP--VKLHCSMLAEDAIKAAVKDYEAK 70 (89)
Q Consensus 17 S~~telikGktl~Ea~~i~~~~i~e~L---------gl------------pp--~Ri~CA~La~~AL~~Al~~y~~k 70 (89)
-.++++|+|+++++|..+-.+-+...- |+ +. --.+.+..-.+.|+.|..+.+.+
T Consensus 30 r~va~~IrG~~v~~A~~~L~~V~~~k~~VPf~r~~~gvg~~~q~~~~~~~~~gr~PkKaa~~ilklL~sA~aNAe~k 106 (171)
T 3iz5_V 30 RETAFAIRKLPLGKAKRYLEDVIAHKQAIPFRRYCGGVGRTAQAKSRHSNGQGRWPAKSARFILDLLKNAESNAEVK 106 (171)
T ss_dssp HHHHHHSCSCCSHHHHHHHHHHHHTSSCEECSSCCSSCCCCSCCBTTBSCSCEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCccccccccccccccccCCchHHHHHHHHHHHHHHHHHHHc
Confidence 357889999999999998876333211 11 00 14678999999999999998875
No 27
>3bbo_U Ribosomal protein L22; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=52.34 E-value=6.8 Score=27.89 Aligned_cols=46 Identities=13% Similarity=0.116 Sum_probs=35.5
Q ss_pred HHHHHcCCCHHHHHcchhHHHHhhcCCCCcchhhHHHHHHHHHHHHHHHHHhcCCC
Q 034618 19 ATEWVKGKQIQEVLSIKNTEIAKHLSLPPVKLHCSMLAEDAIKAAVKDYEAKRTKP 74 (89)
Q Consensus 19 ~telikGktl~Ea~~i~~~~i~e~Lglpp~Ri~CA~La~~AL~~Al~~y~~k~~~~ 74 (89)
++++|+|++++||..+-.. . ..+.+..-.+.|+.|+.+...+.+.+
T Consensus 49 Vad~IRG~~V~eAl~iL~f--------~--PkKaA~~V~KlLkSA~ANAe~n~GLD 94 (199)
T 3bbo_U 49 VIDQIRGRSYAETLMILEL--------M--PYRACYPIFKLIYSAAANASHNKQFN 94 (199)
T ss_dssp THHHHTTCBTTTTTTTGGG--------C--CCTTHHHHHHHHHHHTTHHHHTSSCC
T ss_pred HHHHHCCCcHHHHHHHHHH--------C--CHhHHHHHHHHHHHHHHhHHhccCCC
Confidence 5788999999999887654 1 34467788899999999988765554
No 28
>3u5e_P L20A, YL17, 60S ribosomal protein L17-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_I 2ww9_I 2wwb_I 3o5h_Q 3o58_Q 3u5i_P 4b6a_P 1s1i_N 3izc_V 3izs_V 3jyw_N
Probab=50.95 E-value=19 Score=25.11 Aligned_cols=54 Identities=9% Similarity=0.156 Sum_probs=38.6
Q ss_pred HHHHHHHcCCCHHHHHcchhHHHHhh--------------------cCCCC--cchhhHHHHHHHHHHHHHHHHHh
Q 034618 17 VSATEWVKGKQIQEVLSIKNTEIAKH--------------------LSLPP--VKLHCSMLAEDAIKAAVKDYEAK 70 (89)
Q Consensus 17 S~~telikGktl~Ea~~i~~~~i~e~--------------------Lglpp--~Ri~CA~La~~AL~~Al~~y~~k 70 (89)
-.++++|+|+++++|..+-.+-+... .|... --.+.+..-.+.|+.|..+.+.+
T Consensus 30 reva~~IRG~~v~~A~~~L~~V~~~k~~VPf~rf~~gvg~~~q~~~~g~~~GR~PkKaa~~ilklLksA~aNAe~k 105 (184)
T 3u5e_P 30 RETAQAINGWELTKAQKYLEQVLDHQRAIPFRRFNSSIGRTAQGKEFGVTKARWPAKSVKFVQGLLQNAAANAEAK 105 (184)
T ss_dssp HHHHTTTTTCBHHHHHHHHHHHHTTSSCEECCSSCTTCCCCGGGGGGTCSCEECCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCCcccchhhccCCccCCCchHHHHHHHHHHHHHHHHHHHc
Confidence 35678899999999999877532211 11111 24678899999999999998764
No 29
>3zs7_A Pyridoxal kinase; transferase, sleeping sickness; HET: ATP; 2.00A {Trypanosoma brucei}
Probab=50.86 E-value=9.4 Score=27.48 Aligned_cols=36 Identities=6% Similarity=-0.045 Sum_probs=26.0
Q ss_pred eeecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHHHHhhc
Q 034618 3 YLLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTEIAKHL 43 (89)
Q Consensus 3 F~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~i~e~L 43 (89)
|-|-||+.+ +.+++.+ .|.+++++.......+...|
T Consensus 224 ~~GtGD~fs----aal~a~l-~g~~~~~Av~~A~~~v~~~i 259 (300)
T 3zs7_A 224 YTGTGDVFA----ACLLAFS-HSHPMDVAIGKSMAVLQELI 259 (300)
T ss_dssp BTTHHHHHH----HHHHHHH-TTSCHHHHHHHHHHHHHHHH
T ss_pred CcCHHHHHH----HHHHHHH-cCCCHHHHHHHHHHHHHHHH
Confidence 567888887 5566666 89999998877776544433
No 30
>4a17_Q RPL17, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Q 4a1c_Q 4a1e_Q
Probab=49.70 E-value=16 Score=25.60 Aligned_cols=54 Identities=9% Similarity=0.098 Sum_probs=38.2
Q ss_pred HHHHHHHcCCCHHHHHcchhHHHHhh--------------------cCCCCc--chhhHHHHHHHHHHHHHHHHHh
Q 034618 17 VSATEWVKGKQIQEVLSIKNTEIAKH--------------------LSLPPV--KLHCSMLAEDAIKAAVKDYEAK 70 (89)
Q Consensus 17 S~~telikGktl~Ea~~i~~~~i~e~--------------------Lglpp~--Ri~CA~La~~AL~~Al~~y~~k 70 (89)
-..++.|+|+++++|..+-.+-+... +|+... -.+.+..-.+.|+.|..+.+.+
T Consensus 32 reva~~IRG~~v~~A~~~L~~V~~~K~~vPfrrynggvg~~~q~k~~g~~~Gr~PkKaa~~ilklLksA~aNAe~k 107 (183)
T 4a17_Q 32 YEVVRAIKGLNLENAKRYLKAVIDRKRCIPFTRFTGCIGRTAQAHEFGRTQGRWPVKSVKVILGLLDNLSANAQAK 107 (183)
T ss_dssp HHHHHHHTTSBHHHHHHHHHHHHTTSSCEECCSCCTTCCBCGGGGGTTCSBEECCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHhcccccceeeecCCcccchhhhhcCCccCcCcHHHHHHHHHHHHHHHHHHHhc
Confidence 35678999999999999887633211 122111 2578888899999999987654
No 31
>2i5b_A Phosphomethylpyrimidine kinase; ADP complex, PDXK, THID, ribokinase superfamily, transferase; HET: ADP; 2.80A {Bacillus subtilis}
Probab=41.39 E-value=16 Score=25.01 Aligned_cols=32 Identities=19% Similarity=0.140 Sum_probs=24.3
Q ss_pred eeecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHH
Q 034618 3 YLLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTE 38 (89)
Q Consensus 3 F~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~ 38 (89)
.-|-||+.+ +.++..+++|+++.|+..+-...
T Consensus 211 t~GaGD~f~----a~~~~~l~~g~~~~~A~~~A~~~ 242 (271)
T 2i5b_A 211 THGAGCTFS----AAVTAELAKGAEVKEAIYAAKEF 242 (271)
T ss_dssp CBTHHHHHH----HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCChHHHHH----HHHHHHHHcCCCHHHHHHHHHHH
Confidence 356677766 66777888999999998876643
No 32
>2zqe_A MUTS2 protein; alpha/beta, ATP-binding, DNA-binding, nucleotide-binding, DN protein; 1.70A {Thermus thermophilus}
Probab=39.23 E-value=10 Score=22.71 Aligned_cols=49 Identities=14% Similarity=0.279 Sum_probs=31.7
Q ss_pred HcCCCHHHHHcchhHHHHhhc--CCCCcchhhHHHHHHHHHHHHHHHHHhcC
Q 034618 23 VKGKQIQEVLSIKNTEIAKHL--SLPPVKLHCSMLAEDAIKAAVKDYEAKRT 72 (89)
Q Consensus 23 ikGktl~Ea~~i~~~~i~e~L--glpp~Ri~CA~La~~AL~~Al~~y~~k~~ 72 (89)
+.|++++||.......+.+.. |+..-+|--= -+-.+|+.++.+|..+..
T Consensus 9 LhG~~~~eA~~~l~~fl~~a~~~g~~~v~IIHG-kG~GvLr~~V~~~L~~~~ 59 (83)
T 2zqe_A 9 LRGLTVAEALLEVDQALEEARALGLSTLRLLHG-KGTGALRQAIREALRRDK 59 (83)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCSEEEEECC-STTSHHHHHHHHHHHHCT
T ss_pred CCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEC-CCchHHHHHHHHHHhcCC
Confidence 469999999999988877654 4311000000 001489999999998764
No 33
>1zav_U 50S ribosomal protein L7/L12; ribosome structure and function, L10-L12 complex structure, L10E structure, L7/12 ribosomal stalk; 1.90A {Thermotoga maritima} SCOP: a.108.1.1 PDB: 1zaw_U 1zax_U 1dd3_C
Probab=37.29 E-value=18 Score=18.10 Aligned_cols=23 Identities=9% Similarity=0.195 Sum_probs=17.1
Q ss_pred HHHHHcCCCHHHHHcchhHHHHhh
Q 034618 19 ATEWVKGKQIQEVLSIKNTEIAKH 42 (89)
Q Consensus 19 ~telikGktl~Ea~~i~~~~i~e~ 42 (89)
+.+.+++.|+-|+..+... +.+.
T Consensus 6 iie~i~~lTvlEl~eLvk~-lEe~ 28 (30)
T 1zav_U 6 IIEAIEKLTVSELAELVKK-LEDK 28 (30)
T ss_dssp HHHHHHHSBHHHHHHHHHH-HHHH
T ss_pred HHHHHHhCcHHHHHHHHHH-HHHH
Confidence 5678899999998887764 4443
No 34
>1ub0_A THID, phosphomethylpyrimidine kinase; thiamin biosynthesis, ribokinase family, phosphorylati structural genomics; 2.05A {Thermus thermophilus} SCOP: c.72.1.2
Probab=35.70 E-value=20 Score=24.26 Aligned_cols=30 Identities=20% Similarity=0.159 Sum_probs=22.7
Q ss_pred eecchhhhHHHHHHHHHHHHcCCCHHHHHcchhH
Q 034618 4 LLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 4 ~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~ 37 (89)
.|-||+.+ +.++..+++|++++|+..+-..
T Consensus 206 ~GaGD~f~----a~~~~~l~~g~~~~~a~~~a~~ 235 (258)
T 1ub0_A 206 HGTGCTLS----AAIAALLAKGRPLAEAVAEAKA 235 (258)
T ss_dssp TTHHHHHH----HHHHHHHHTTCCHHHHHHHHHH
T ss_pred CChHHHHH----HHHHHHHHcCCCHHHHHHHHHH
Confidence 35566665 6778888999999999887654
No 35
>1jxh_A Phosphomethylpyrimidine kinase; THID, ribokinase family, phophorylation, transferase; 2.30A {Salmonella typhimurium} SCOP: c.72.1.2 PDB: 1jxi_A*
Probab=35.49 E-value=18 Score=25.34 Aligned_cols=31 Identities=13% Similarity=-0.048 Sum_probs=23.6
Q ss_pred eeecchhhhHHHHHHHHHHHHcCCCHHHHHcchhH
Q 034618 3 YLLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 3 F~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~ 37 (89)
..|-||+.+ +.++..+++|++++|+..+-..
T Consensus 230 ttGAGD~f~----a~~~a~l~~g~~~~~A~~~A~a 260 (288)
T 1jxh_A 230 THGTGCTLS----AALAALRPRHRSWGETVNEAKA 260 (288)
T ss_dssp CBTHHHHHH----HHHHHHGGGSSSHHHHHHHHHH
T ss_pred CCCchHHHH----HHHHHHHHcCCCHHHHHHHHHH
Confidence 345666665 6777888999999999887764
No 36
>2ddm_A Pyridoxine kinase; pyridoxal kinase, ribokinase, pyridoxal 5'-phosphate, vitamin B6, phosphorylation, transferase; 2.10A {Escherichia coli} PDB: 2ddo_A* 2ddw_A*
Probab=35.05 E-value=25 Score=24.29 Aligned_cols=30 Identities=13% Similarity=0.035 Sum_probs=22.8
Q ss_pred eecchhhhHHHHHHHHHHHHcCCCHHHHHcchhH
Q 034618 4 LLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 4 ~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~ 37 (89)
.|-||+.+ +.++..+++|+++.++..+-..
T Consensus 229 ~GAGDaf~----a~~~~~l~~g~~~~~A~~~A~a 258 (283)
T 2ddm_A 229 KGTGDLFC----AQLISGLLKGKALTDAVHRAGL 258 (283)
T ss_dssp CCHHHHHH----HHHHHHHHTTCCHHHHHHHHHH
T ss_pred CChHHHHH----HHHHHHHHcCCCHHHHHHHHHH
Confidence 45666665 6778888999999998876654
No 37
>4du5_A PFKB; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.70A {Polaromonas SP}
Probab=34.22 E-value=23 Score=25.24 Aligned_cols=29 Identities=10% Similarity=-0.087 Sum_probs=22.4
Q ss_pred ecchhhhHHHHHHHHHHHHcCCCHHHHHcchhH
Q 034618 5 LRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 5 g~GC~is~~ASaS~~telikGktl~Ea~~i~~~ 37 (89)
|-||+.+ +.++..+++|++++++..+-..
T Consensus 282 GAGDaf~----a~~~~~l~~g~~l~~a~~~A~~ 310 (336)
T 4du5_A 282 GAGDGFA----VGVISALLDGLGVPEAVKRGAW 310 (336)
T ss_dssp CHHHHHH----HHHHHHHHTTCCHHHHHHHHHH
T ss_pred cchHHHH----HHHHHHHHcCCCHHHHHHHHHH
Confidence 4455554 7788889999999999887664
No 38
>2nwh_A AGR_C_3442P, carbohydrate kinase; structural genomics, APC6199, PSI-2, PR structure initiative 2; 1.86A {Agrobacterium tumefaciens str}
Probab=31.15 E-value=34 Score=24.02 Aligned_cols=31 Identities=19% Similarity=0.085 Sum_probs=23.8
Q ss_pred eecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHH
Q 034618 4 LLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTE 38 (89)
Q Consensus 4 ~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~ 38 (89)
.|-||+.+ +.++..+++|++++++..+-...
T Consensus 251 ~GAGDaf~----a~~~~~l~~g~~~~~a~~~A~~~ 281 (317)
T 2nwh_A 251 TGAGDAMA----SGYLAAIAEGKTIREALRQGAAA 281 (317)
T ss_dssp CCSSHHHH----HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CChhHHHH----HHHHHHHHcCCCHHHHHHHHHHH
Confidence 35566554 77888899999999998877653
No 39
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=29.43 E-value=28 Score=18.41 Aligned_cols=28 Identities=14% Similarity=0.334 Sum_probs=18.2
Q ss_pred HcCCCHHHHHcchhH---HHHhhcCCCCcch
Q 034618 23 VKGKQIQEVLSIKNT---EIAKHLSLPPVKL 50 (89)
Q Consensus 23 ikGktl~Ea~~i~~~---~i~e~Lglpp~Ri 50 (89)
..|+|.++-.++... .+.+.||+|++++
T Consensus 8 ~~grs~e~k~~l~~~i~~~l~~~lg~p~~~v 38 (62)
T 1otf_A 8 IEGRTDEQKETLIRQVSEAMANSLDAPLERV 38 (62)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHTCCGGGC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 467888877777664 2344557777665
No 40
>2yxt_A Pyridoxal kinase; beta sheet with alpha helix, metal ION, transferase; 2.00A {Homo sapiens} PDB: 2yxu_A* 3kbi_A* 3keu_A* 4en4_A* 4eoh_A* 2f7k_A 3fhy_A* 3fhx_A* 2ajp_A* 1lhp_A 1lhr_A* 1rft_A* 1rfu_A* 1rfv_A* 1ygj_A* 1ygk_A* 1yhj_A*
Probab=28.84 E-value=29 Score=24.33 Aligned_cols=29 Identities=7% Similarity=-0.200 Sum_probs=21.5
Q ss_pred ecchhhhHHHHHHHHHHHHc-CCCHHHHHcchhH
Q 034618 5 LRGFTNLYGVSNVSATEWVK-GKQIQEVLSIKNT 37 (89)
Q Consensus 5 g~GC~is~~ASaS~~telik-Gktl~Ea~~i~~~ 37 (89)
|-||+.+ +.++..+++ |++++++..+-..
T Consensus 232 GAGDaf~----a~~~~~l~~~g~~l~~a~~~A~a 261 (312)
T 2yxt_A 232 GTGDLFA----AMLLAWTHKHPNNLKVACEKTVS 261 (312)
T ss_dssp SHHHHHH----HHHHHHHHHSTTCHHHHHHHHHH
T ss_pred CchHHHH----HHHHHHHHhcCCCHHHHHHHHHH
Confidence 4555554 677888898 9999998876653
No 41
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=28.67 E-value=28 Score=21.24 Aligned_cols=27 Identities=19% Similarity=0.310 Sum_probs=13.5
Q ss_pred CCCHHHHHcchhH---HHHhhcCCCCcchh
Q 034618 25 GKQIQEVLSIKNT---EIAKHLSLPPVKLH 51 (89)
Q Consensus 25 Gktl~Ea~~i~~~---~i~e~Lglpp~Ri~ 51 (89)
|.+.++=.+++.. .+.+.||+||+|++
T Consensus 67 ~~~~e~~~~l~~~i~~~l~~~Lgi~~~riy 96 (114)
T 4dh4_A 67 GITSSTNCKIAAALSAACERHLGVPKNRIY 96 (114)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCcCcccEE
Confidence 4444443333332 24455577777764
No 42
>3lhx_A Ketodeoxygluconokinase; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.87A {Shigella flexneri}
Probab=28.45 E-value=28 Score=24.38 Aligned_cols=23 Identities=4% Similarity=-0.068 Sum_probs=19.5
Q ss_pred HHHHHHHHcCCCHHHHHcchhHH
Q 034618 16 NVSATEWVKGKQIQEVLSIKNTE 38 (89)
Q Consensus 16 aS~~telikGktl~Ea~~i~~~~ 38 (89)
+.++..+++|++++++..+-...
T Consensus 270 a~~~~~l~~g~~~~~a~~~A~~~ 292 (319)
T 3lhx_A 270 AGYLAVRLTGGSAENAAKRGHLT 292 (319)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHH
Confidence 67888899999999999887753
No 43
>4e69_A 2-dehydro-3-deoxygluconokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Oceanicola granulosus} PDB: 4ebu_A* 4eum_A*
Probab=28.01 E-value=32 Score=24.44 Aligned_cols=22 Identities=5% Similarity=0.116 Sum_probs=19.0
Q ss_pred HHHHHHHHcCCCHHHHHcchhH
Q 034618 16 NVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 16 aS~~telikGktl~Ea~~i~~~ 37 (89)
+.++..+++|++++++..+-..
T Consensus 283 a~~~~~l~~g~~l~~a~~~A~~ 304 (328)
T 4e69_A 283 AGLLDSVLAGQPLETAIAAAAA 304 (328)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHH
Confidence 6688889999999999887765
No 44
>1rkd_A Ribokinase; carbohydrate kinase, ribose, nucleotide binding, transferase; HET: RIB ADP; 1.84A {Escherichia coli} SCOP: c.72.1.1 PDB: 1gqt_A* 1rka_A 1rk2_A* 1rks_A*
Probab=27.66 E-value=33 Score=23.79 Aligned_cols=30 Identities=17% Similarity=0.142 Sum_probs=22.7
Q ss_pred ecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHH
Q 034618 5 LRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTE 38 (89)
Q Consensus 5 g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~ 38 (89)
|-||+.+ +.++..+++|++++++..+-...
T Consensus 252 GAGD~f~----a~~~~~l~~g~~~~~a~~~a~~~ 281 (309)
T 1rkd_A 252 AAGDTFN----GALITALLEEKPLPEAIRFAHAA 281 (309)
T ss_dssp THHHHHH----HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ChHHHHH----HHHHHHHHcCCCHHHHHHHHHHH
Confidence 4455544 67888899999999998877653
No 45
>1vm7_A Ribokinase; TM0960, structural genomics, JCSG, protein struc initiative, PSI, joint center for structural genomics, TRAN; 2.15A {Thermotoga maritima} SCOP: c.72.1.1
Probab=27.63 E-value=33 Score=24.12 Aligned_cols=30 Identities=17% Similarity=0.092 Sum_probs=22.8
Q ss_pred ecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHH
Q 034618 5 LRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTE 38 (89)
Q Consensus 5 g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~ 38 (89)
|-||+.+ +.++..+++|++++|+..+-...
T Consensus 255 GAGDaf~----a~~~~~l~~g~~~~~a~~~A~~~ 284 (311)
T 1vm7_A 255 AAGDVFN----GAFAVALSEGKNPEEAVIFGTAA 284 (311)
T ss_dssp THHHHHH----HHHHHHHHTTCCHHHHHHHHHHH
T ss_pred ccHHHHH----HHHHHHHHCCCCHHHHHHHHHHH
Confidence 4455444 67888899999999999887754
No 46
>2qhp_A Fructokinase; NP_810670.1, PFKB family carbohydrate kinase, structural genomics, joint center for structural genomics; HET: MSE; 1.80A {Bacteroides thetaiotaomicron vpi-5482}
Probab=27.15 E-value=32 Score=23.63 Aligned_cols=23 Identities=13% Similarity=0.226 Sum_probs=19.0
Q ss_pred HHHHHHHHHcCCCHHHHHcchhH
Q 034618 15 SNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 15 SaS~~telikGktl~Ea~~i~~~ 37 (89)
++.++..+++|++++++..+-..
T Consensus 250 ~a~~~~~l~~g~~~~~a~~~a~~ 272 (296)
T 2qhp_A 250 TAAFCASILNGKSVPEAHKLAVE 272 (296)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 36778888999999999887765
No 47
>3pl2_A Sugar kinase, ribokinase family; PFKB PFAM motif, inositol phosphate metabolism, ribokinase-L structural genomics; HET: MSE CIT; 1.89A {Corynebacterium glutamicum} SCOP: c.72.1.0
Probab=26.60 E-value=35 Score=23.76 Aligned_cols=30 Identities=17% Similarity=0.189 Sum_probs=22.1
Q ss_pred cchhhhHHHHHHHHHHHHcCCCHHHHHcchhH
Q 034618 6 RGFTNLYGVSNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 6 ~GC~is~~ASaS~~telikGktl~Ea~~i~~~ 37 (89)
.|+.-+ -++.++..+++|++++|+..+-..
T Consensus 261 tGAGDa--f~a~~~~~l~~g~~~~~a~~~A~~ 290 (319)
T 3pl2_A 261 LGAGDA--FGGALCHGLLSEWPLEKVLRFANT 290 (319)
T ss_dssp TTHHHH--HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCchHH--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444443 236788889999999999887764
No 48
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase; 2.3A {Staphylococcus aureus}
Probab=26.59 E-value=36 Score=23.53 Aligned_cols=23 Identities=9% Similarity=0.036 Sum_probs=19.1
Q ss_pred HHHHHHHHHcCCCHHHHHcchhH
Q 034618 15 SNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 15 SaS~~telikGktl~Ea~~i~~~ 37 (89)
++.++..+++|++++++..+-..
T Consensus 252 ~a~~~~~l~~g~~~~~a~~~A~a 274 (306)
T 2jg5_A 252 VAGMVAGIASGLSIEKAFQQAVA 274 (306)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 36778889999999999887765
No 49
>2c4e_A Sugar kinase MJ0406; transferase, nucleoside kinase, hyperthermophIle, ribokinase ribokinase fold; 1.70A {Methanococcus jannaschii} PDB: 2c49_A
Probab=26.56 E-value=36 Score=23.66 Aligned_cols=24 Identities=17% Similarity=0.170 Sum_probs=20.0
Q ss_pred HHHHHHHHHcCCCHHHHHcchhHH
Q 034618 15 SNVSATEWVKGKQIQEVLSIKNTE 38 (89)
Q Consensus 15 SaS~~telikGktl~Ea~~i~~~~ 38 (89)
++.++..+++|++++++..+-...
T Consensus 250 ~a~~~~~l~~g~~~~~a~~~a~~~ 273 (302)
T 2c4e_A 250 RAGFLSAYVKGYDLEKCGLIGAAT 273 (302)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 367888899999999999887754
No 50
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=26.37 E-value=34 Score=18.00 Aligned_cols=29 Identities=7% Similarity=0.169 Sum_probs=18.5
Q ss_pred HcCCCHHHHHcchhH---HHHhhcCCCCcchh
Q 034618 23 VKGKQIQEVLSIKNT---EIAKHLSLPPVKLH 51 (89)
Q Consensus 23 ikGktl~Ea~~i~~~---~i~e~Lglpp~Ri~ 51 (89)
..|+|.++-.++... .+.+.||+|++++.
T Consensus 8 ~~grs~eqk~~l~~~i~~~l~~~lg~~~~~v~ 39 (61)
T 2opa_A 8 LEGRTDEQKRNLVEKVTEAVKETTGASEEKIV 39 (61)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHCCCGGGCE
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCcCcCeEE
Confidence 457888877777664 23445577776653
No 51
>2qcv_A Putative 5-dehydro-2-deoxygluconokinase; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: PGE; 1.90A {Bacillus halodurans c-125}
Probab=25.36 E-value=38 Score=23.72 Aligned_cols=24 Identities=17% Similarity=0.241 Sum_probs=19.9
Q ss_pred HHHHHHHHHcCCCHHHHHcchhHH
Q 034618 15 SNVSATEWVKGKQIQEVLSIKNTE 38 (89)
Q Consensus 15 SaS~~telikGktl~Ea~~i~~~~ 38 (89)
++.++..+++|++++++..+-...
T Consensus 276 ~a~~~~~l~~g~~~~~a~~~A~~~ 299 (332)
T 2qcv_A 276 ASAFLYALISGKGIETALKYGSAS 299 (332)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHH
Confidence 377888899999999999887753
No 52
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2, glycolysis, transferase; HET: ATP; 1.98A {Escherichia coli} PDB: 3n1c_A*
Probab=25.22 E-value=39 Score=23.42 Aligned_cols=31 Identities=6% Similarity=0.130 Sum_probs=22.8
Q ss_pred cchhhhHHHHHHHHHHHHcCCCHHHHHcchhHH
Q 034618 6 RGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTE 38 (89)
Q Consensus 6 ~GC~is~~ASaS~~telikGktl~Ea~~i~~~~ 38 (89)
.|+.-+ -++.++..+++|++++++..+-...
T Consensus 252 tGAGDa--f~a~~~~~l~~g~~~~~a~~~A~~~ 282 (309)
T 3cqd_A 252 VGAGDS--MVGAMTLKLAENASLEEMVRFGVAA 282 (309)
T ss_dssp TTHHHH--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCcHHH--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 444443 2367888899999999999887653
No 53
>1vk4_A PFKB carbohydrate kinase TM0415; structural genomics, JCSG, protein structure initiative, joint center for structural G transferase; 1.91A {Thermotoga maritima} SCOP: c.72.1.1
Probab=25.14 E-value=40 Score=23.48 Aligned_cols=30 Identities=10% Similarity=0.087 Sum_probs=22.2
Q ss_pred cchhhhHHHHHHHHHHHHc-CCCHHHHHcchhH
Q 034618 6 RGFTNLYGVSNVSATEWVK-GKQIQEVLSIKNT 37 (89)
Q Consensus 6 ~GC~is~~ASaS~~telik-Gktl~Ea~~i~~~ 37 (89)
.|+.-+ =++.++..+++ |++++++..+-..
T Consensus 242 tGAGDa--F~a~~~~~l~~~g~~~~~a~~~A~a 272 (298)
T 1vk4_A 242 TGRGDT--CTAAFLVGFVFKKMSIEKATKFAAA 272 (298)
T ss_dssp TTHHHH--HHHHHHHHHHTSCCCHHHHHHHHHH
T ss_pred cCccHH--HHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444443 24678888999 9999999887765
No 54
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=25.02 E-value=34 Score=20.59 Aligned_cols=28 Identities=11% Similarity=0.190 Sum_probs=16.5
Q ss_pred cCCCHHHHHcchhH---HHHhhcCCCCcchh
Q 034618 24 KGKQIQEVLSIKNT---EIAKHLSLPPVKLH 51 (89)
Q Consensus 24 kGktl~Ea~~i~~~---~i~e~Lglpp~Ri~ 51 (89)
.|.+.++=.++... .+.+.||++|+|++
T Consensus 65 ~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~ 95 (113)
T 1hfo_A 65 GGIEPSRNRDHSAKLFDHLNTKLGIPKNRMY 95 (113)
T ss_dssp SSCSHHHHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCcCcCeEE
Confidence 35776665555553 24455678777764
No 55
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=24.77 E-value=35 Score=20.63 Aligned_cols=28 Identities=14% Similarity=0.113 Sum_probs=16.4
Q ss_pred cCCCHHHHHcchhH---HHHhhcCCCCcchh
Q 034618 24 KGKQIQEVLSIKNT---EIAKHLSLPPVKLH 51 (89)
Q Consensus 24 kGktl~Ea~~i~~~---~i~e~Lglpp~Ri~ 51 (89)
.|.+.++=.++... .+.+.||++|+|++
T Consensus 66 ~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~ 96 (115)
T 1uiz_A 66 GKIGGPQNKSYTKLLCDILTKQLNIPANRVY 96 (115)
T ss_dssp SCCSHHHHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCcCcceEE
Confidence 46776665555553 24455677777764
No 56
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=24.72 E-value=25 Score=19.19 Aligned_cols=28 Identities=21% Similarity=0.363 Sum_probs=18.4
Q ss_pred HcCCCHHHHHcchhH---HHHhhcCCCCcch
Q 034618 23 VKGKQIQEVLSIKNT---EIAKHLSLPPVKL 50 (89)
Q Consensus 23 ikGktl~Ea~~i~~~---~i~e~Lglpp~Ri 50 (89)
..|+|.++-.+|... .+.+.||+|++.+
T Consensus 8 ~~Grs~eqk~~L~~~it~~~~~~lg~p~~~v 38 (65)
T 3ry0_A 8 LEGRSPQEVAALGEALTAAAHETLGTPVEAV 38 (65)
T ss_dssp ESCCCHHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 468888887777774 2344557776654
No 57
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=23.77 E-value=39 Score=20.68 Aligned_cols=28 Identities=14% Similarity=0.114 Sum_probs=16.2
Q ss_pred cCCCHHHHHcchhH---HHHhhcCCCCcchh
Q 034618 24 KGKQIQEVLSIKNT---EIAKHLSLPPVKLH 51 (89)
Q Consensus 24 kGktl~Ea~~i~~~---~i~e~Lglpp~Ri~ 51 (89)
.|.+.++=.++... .+.+.||++|+|++
T Consensus 66 ~g~~~eqk~~l~~~i~~~l~~~lgi~~~~v~ 96 (119)
T 2os5_A 66 GALSADDNIRHTQKITQFCQDTLKLPKDKVI 96 (119)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHCCCGGGEE
T ss_pred cCCCHHHHHHHHHHHHHHHHHHhCcCcccEE
Confidence 35676665555553 24455577777754
No 58
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI, protein structure initiative YORK SGX research center for structural genomics; HET: ATP; 1.90A {Enterococcus faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Probab=23.77 E-value=43 Score=23.54 Aligned_cols=23 Identities=17% Similarity=-0.022 Sum_probs=19.4
Q ss_pred HHHHHHHHHcCCCHHHHHcchhH
Q 034618 15 SNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 15 SaS~~telikGktl~Ea~~i~~~ 37 (89)
++.++..+++|++++++..+-..
T Consensus 260 ~a~~~~~l~~g~~~~~a~~~A~~ 282 (323)
T 2f02_A 260 IAGLAYGLAKDAPAAELLKWGMA 282 (323)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHH
Confidence 36788889999999999988775
No 59
>3h49_A Ribokinase; transferase,PFKB family,sugar kinase YDJH, NYSGXRC,11206A,PSI2,, structural genomics, protein structure initiative; 1.80A {Escherichia coli k-12} PDB: 3in1_A*
Probab=23.49 E-value=44 Score=23.51 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=22.9
Q ss_pred ecchhhhHHHHHHHHHHHHcCCCHHHHHcchhH
Q 034618 5 LRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 5 g~GC~is~~ASaS~~telikGktl~Ea~~i~~~ 37 (89)
..|+.-+ -++.++..+++|++++++..+-..
T Consensus 257 ttGAGDa--f~ag~~~~l~~g~~~~~a~~~A~~ 287 (325)
T 3h49_A 257 TIGAGDN--FASGFIAALLEGKNLRECARFANA 287 (325)
T ss_dssp CTTHHHH--HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCChhHH--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3455544 236778889999999999987765
No 60
>3umo_A 6-phosphofructokinase isozyme 2; glycolysis, transferase, PFK, enzyme; HET: ATP; 1.70A {Escherichia coli} PDB: 3n1c_A* 3cqd_A* 3ump_A* 3uqd_A* 3uqe_A*
Probab=23.07 E-value=45 Score=23.07 Aligned_cols=30 Identities=7% Similarity=0.134 Sum_probs=22.0
Q ss_pred cchhhhHHHHHHHHHHHHcCCCHHHHHcchhH
Q 034618 6 RGFTNLYGVSNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 6 ~GC~is~~ASaS~~telikGktl~Ea~~i~~~ 37 (89)
.|+.-+ -++.++..+++|++++++..+-..
T Consensus 252 tGAGD~--f~a~~~~~l~~g~~~~~a~~~A~~ 281 (309)
T 3umo_A 252 VGAGDS--MVGAMTLKLAENASLEEMVRFGVA 281 (309)
T ss_dssp TTHHHH--HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cChHHH--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344443 236778889999999999887765
No 61
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION, PSI-II, NYSGXRC, kinase, structural genomics, structure initiative; HET: ATP; 1.60A {Listeria innocua} PDB: 3hic_A* 3jul_A* 3q1y_A
Probab=22.51 E-value=47 Score=23.17 Aligned_cols=30 Identities=13% Similarity=0.151 Sum_probs=22.0
Q ss_pred cchhhhHHHHHHHHHHHHcCCCHHHHHcchhH
Q 034618 6 RGFTNLYGVSNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 6 ~GC~is~~ASaS~~telikGktl~Ea~~i~~~ 37 (89)
.|++-+ -++.++..+++|++++++..+-..
T Consensus 249 tGAGDa--F~ag~~~~l~~g~~~~~a~~~A~a 278 (320)
T 3ie7_A 249 TGAGDV--FVGAFIAGLAMNMPITETLKVATG 278 (320)
T ss_dssp TTHHHH--HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred cCchHH--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 344443 236778889999999999887764
No 62
>1v1a_A 2-keto-3-deoxygluconate kinase; ATP, structural genomics, transferase, riken structural genomics/proteomics initiative, RSGI; HET: KDG ADP; 2.1A {Thermus thermophilus} SCOP: c.72.1.1 PDB: 1v19_A* 1v1b_A* 1v1s_A
Probab=22.25 E-value=48 Score=22.99 Aligned_cols=31 Identities=19% Similarity=0.109 Sum_probs=23.0
Q ss_pred ecchhhhHHHHHHHHHHHHcCCCHHHHHcchhH
Q 034618 5 LRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 5 g~GC~is~~ASaS~~telikGktl~Ea~~i~~~ 37 (89)
..|+.-+ -++.++..+++|++++++..+-..
T Consensus 246 ttGAGDa--f~a~~~~~l~~g~~~~~a~~~a~~ 276 (309)
T 1v1a_A 246 PVGAGDA--FAAGYLAGAVWGLPVEERLRLANL 276 (309)
T ss_dssp CTTHHHH--HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCchHH--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3455544 246788889999999999887765
No 63
>2afb_A 2-keto-3-deoxygluconate kinase; TM0067, 2-dehydro-3- deoxygluconokinase, PFKB family carbohy kinase, structural genomics; 2.05A {Thermotoga maritima} SCOP: c.72.1.1
Probab=22.17 E-value=45 Score=23.67 Aligned_cols=31 Identities=10% Similarity=-0.008 Sum_probs=22.8
Q ss_pred cchhhhHHHHHHHHHHHHcCCCHHHHHcchhHH
Q 034618 6 RGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTE 38 (89)
Q Consensus 6 ~GC~is~~ASaS~~telikGktl~Ea~~i~~~~ 38 (89)
.|+.-+ -++.++..+++|++++++..+-...
T Consensus 288 tGAGDa--F~ag~~~~l~~g~~l~~a~~~A~~~ 318 (351)
T 2afb_A 288 VGAGDS--FAGALIYGSLMGFDSQKKAEFAAAA 318 (351)
T ss_dssp TTHHHH--HHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCchHH--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344443 2367888899999999999887754
No 64
>2fv7_A Ribokinase; structural genomics, structural genomics consort transferase; HET: ADP; 2.10A {Homo sapiens} SCOP: c.72.1.1
Probab=22.00 E-value=45 Score=23.56 Aligned_cols=29 Identities=14% Similarity=-0.025 Sum_probs=22.0
Q ss_pred ecchhhhHHHHHHHHHHHHcC--CCHHHHHcchhH
Q 034618 5 LRGFTNLYGVSNVSATEWVKG--KQIQEVLSIKNT 37 (89)
Q Consensus 5 g~GC~is~~ASaS~~telikG--ktl~Ea~~i~~~ 37 (89)
|-||+.+ +.++..+++| ++++++..+-..
T Consensus 275 GAGDaf~----a~~~~~l~~g~~~~~~~a~~~A~~ 305 (331)
T 2fv7_A 275 GAGDSFV----GALAFYLAYYPNLSLEDMLNRSNF 305 (331)
T ss_dssp THHHHHH----HHHHHHHHHCTTSCHHHHHHHHHH
T ss_pred CchHHHH----HHHHHHHHhCCCCCHHHHHHHHHH
Confidence 4455544 6788889999 999999887765
No 65
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein, PSI-2, PR structure initiative, NEW YORK SGX research center for STRU genomics; 1.80A {Escherichia coli} SCOP: d.3.1.21
Probab=21.27 E-value=55 Score=21.67 Aligned_cols=18 Identities=17% Similarity=0.160 Sum_probs=16.0
Q ss_pred CCcchhhHHHHHHHHHHH
Q 034618 46 PPVKLHCSMLAEDAIKAA 63 (89)
Q Consensus 46 pp~Ri~CA~La~~AL~~A 63 (89)
..++..|+.|.|++++.+
T Consensus 106 ~~~~~yCSelV~~ay~~a 123 (186)
T 2if6_A 106 SDDRQYCSEVVWKVYQNA 123 (186)
T ss_dssp SSSSBCHHHHHHHHHHHH
T ss_pred CCCcEEhHHHHHHHHHHh
Confidence 467899999999999986
No 66
>3o5t_A Dinitrogenase reductase activacting glicohydrolas; ADP binding, hydrolase-transcription complex; HET: ADP; 2.09A {Azospirillum brasilense} SCOP: a.209.1.0 PDB: 3g9d_A*
Probab=21.23 E-value=1.5e+02 Score=20.93 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCCHHHHHcchhH
Q 034618 12 YGVSNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 12 ~~ASaS~~telikGktl~Ea~~i~~~ 37 (89)
|++-+.++...+.|++++++......
T Consensus 167 a~~~a~~i~~~~~g~~~~~~~~~~~~ 192 (297)
T 3o5t_A 167 TLTLGHMVRRLVLGGDVRDVRDESNK 192 (297)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 47778888889999999997765544
No 67
>2zjq_5 50S ribosomal protein L7/L12; ribosome, ribosomal subunit, thiopeptide antibiotics, complex, translational regulation, molecular switch; 3.30A {Deinococcus radiodurans} SCOP: d.45.1.1
Probab=21.08 E-value=77 Score=20.72 Aligned_cols=30 Identities=7% Similarity=0.114 Sum_probs=25.1
Q ss_pred HHHHHHHcCCCHHHHHcchhHHHHhhcCCCC
Q 034618 17 VSATEWVKGKQIQEVLSIKNTEIAKHLSLPP 47 (89)
Q Consensus 17 S~~telikGktl~Ea~~i~~~~i~e~Lglpp 47 (89)
.-+.+.++++|+-|+..+... +.+.||++.
T Consensus 6 ~~i~e~i~~ltllE~~eLv~~-lee~fgv~a 35 (122)
T 2zjq_5 6 QALIDQLGQLTIMELADLIDG-LKETWGVTA 35 (122)
T ss_pred HHHHHHHHcCCHHHHHHHHHH-HHHHcCCCC
Confidence 346788999999999999876 788899865
No 68
>3kzh_A Probable sugar kinase; NYSGXRC, PSI-II, protein structure initiative, modified lysin, structural genomics; HET: BGC; 2.45A {Clostridium perfringens}
Probab=20.97 E-value=52 Score=23.11 Aligned_cols=31 Identities=10% Similarity=0.155 Sum_probs=22.4
Q ss_pred ecchhhhHHHHHHHHHHHHcCCCHHHHHcchhH
Q 034618 5 LRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 5 g~GC~is~~ASaS~~telikGktl~Ea~~i~~~ 37 (89)
..|++-+ =++.++..+++|++++++..+-..
T Consensus 252 ttGAGDa--f~ag~~~~l~~g~~~~~a~~~A~a 282 (328)
T 3kzh_A 252 VTGAGDS--FVAGLGYGYMNKMPIEDIVKFAMT 282 (328)
T ss_dssp CTTHHHH--HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCChhHH--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3444443 236778889999999999887764
No 69
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI, protein structure initiative; 2.10A {Bacillus halodurans} SCOP: c.72.1.1
Probab=20.83 E-value=56 Score=22.60 Aligned_cols=30 Identities=13% Similarity=0.160 Sum_probs=22.0
Q ss_pred cchhhhHHHHHHHHHHHHcCCCHHHHHcchhH
Q 034618 6 RGFTNLYGVSNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 6 ~GC~is~~ASaS~~telikGktl~Ea~~i~~~ 37 (89)
.|+.-+ -++.++..+++|++++++..+-..
T Consensus 245 tGAGDa--F~a~~~~~l~~g~~~~~a~~~A~a 274 (306)
T 2abq_A 245 VGAGDS--VVAGFLAALQEGKSLEDAVPFAVA 274 (306)
T ss_dssp SSHHHH--HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ccHHHH--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 444443 236788889999999999887664
No 70
>2j01_L 50S ribosomal protein L7; ribosome, tRNA, paromomycin, mRNA, translation; 2.8A {Thermus thermophilus} PDB: 2j03_L 3i8i_I
Probab=20.60 E-value=78 Score=20.77 Aligned_cols=30 Identities=7% Similarity=0.116 Sum_probs=25.0
Q ss_pred HHHHHHHcCCCHHHHHcchhHHHHhhcCCCC
Q 034618 17 VSATEWVKGKQIQEVLSIKNTEIAKHLSLPP 47 (89)
Q Consensus 17 S~~telikGktl~Ea~~i~~~~i~e~Lglpp 47 (89)
.-+.+.++++|+-|+..+... +.+.||++.
T Consensus 6 ~~i~e~i~~ltllE~~eLv~~-lee~fgv~a 35 (125)
T 2j01_L 6 ERIKEELSQATVLELKQLIDA-LKEAWGVTA 35 (125)
T ss_pred HHHHHHHHcCCHHHHHHHHHH-HHHHcCCCc
Confidence 346788999999999999876 788898864
No 71
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=20.59 E-value=58 Score=18.35 Aligned_cols=29 Identities=14% Similarity=0.184 Sum_probs=19.3
Q ss_pred HcCC-CHHHHHcchhH---HHHhhcCCCCcchh
Q 034618 23 VKGK-QIQEVLSIKNT---EIAKHLSLPPVKLH 51 (89)
Q Consensus 23 ikGk-tl~Ea~~i~~~---~i~e~Lglpp~Ri~ 51 (89)
..|+ |.++-.+|... .+.+.||+|++++.
T Consensus 8 ~~Grls~eqk~~L~~~l~~~l~~~lgip~~~v~ 40 (76)
T 1gyx_A 8 FPRELDEQQKAALAADITDVIIRHLNSKDSSIS 40 (76)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHTCCGGGCE
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCcCCceEE
Confidence 4688 88888777774 34455677766653
No 72
>4e3a_A Sugar kinase protein; structural genomics, protein structure initiative, nysgrc, S kinase, PSI-biology; HET: ADN; 1.63A {Rhizobium etli} PDB: 3ubo_A*
Probab=20.56 E-value=53 Score=23.59 Aligned_cols=32 Identities=9% Similarity=0.133 Sum_probs=23.4
Q ss_pred eecchhhhHHHHHHHHHHHHcCCCHHHHHcchhH
Q 034618 4 LLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNT 37 (89)
Q Consensus 4 ~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~ 37 (89)
+..|+.-+ =++.++..+++|++++++..+-..
T Consensus 294 DttGAGDa--F~agfl~~l~~g~~l~~a~~~A~~ 325 (352)
T 4e3a_A 294 DTTGAGDL--FASGFLYGYTQGRSLEDCGKLGCL 325 (352)
T ss_dssp CCTTHHHH--HHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCChHHH--HHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34455544 236778889999999999887765
No 73
>2pkf_A Adenosine kinase; transferase, S genomics, TB structural genomics consortium, TBSGC; 1.50A {Mycobacterium tuberculosis} PDB: 2pkk_A* 2pkm_A* 2pkn_A*
Probab=20.46 E-value=54 Score=23.20 Aligned_cols=33 Identities=9% Similarity=-0.029 Sum_probs=24.0
Q ss_pred eecchhhhHHHHHHHHHHHHcCCCHHHHHcchhHH
Q 034618 4 LLRGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTE 38 (89)
Q Consensus 4 ~g~GC~is~~ASaS~~telikGktl~Ea~~i~~~~ 38 (89)
+..|+.-+ =++.++..+++|++++++..+-...
T Consensus 261 DttGAGDa--F~a~~~~~l~~g~~~~~a~~~A~~~ 293 (334)
T 2pkf_A 261 DPTGVGDA--FRAGFLTGRSAGLGLERSAQLGSLV 293 (334)
T ss_dssp CCTTHHHH--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCCchHH--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34455554 2467888899999999999887753
No 74
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=20.19 E-value=64 Score=16.68 Aligned_cols=27 Identities=7% Similarity=0.197 Sum_probs=16.0
Q ss_pred cCCCHHHHHcchhH---HHHhhcCCCCcch
Q 034618 24 KGKQIQEVLSIKNT---EIAKHLSLPPVKL 50 (89)
Q Consensus 24 kGktl~Ea~~i~~~---~i~e~Lglpp~Ri 50 (89)
.|++.++-..|... .+.+.||+|++++
T Consensus 12 ~g~s~e~k~~l~~~l~~~l~~~lg~p~~~v 41 (63)
T 2x4k_A 12 EGRSDEQLKNLVSEVTDAVEKTTGANRQAI 41 (63)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHHCCCGGGC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhCcCcccE
Confidence 47777766666653 2344557776654
No 75
>3ewm_A Uncharacterized sugar kinase PH1459; carbohydrate kinase, PFKB family, PSI-II, NYSGXRC, structural genomics, protein structure initiative; 1.90A {Pyrococcus horikoshii} PDB: 3ih0_A* 3gbu_A*
Probab=20.03 E-value=56 Score=22.73 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=22.4
Q ss_pred ecchhhhHHHHHHHHHHHH--cCCCHHHHHcchhHH
Q 034618 5 LRGFTNLYGVSNVSATEWV--KGKQIQEVLSIKNTE 38 (89)
Q Consensus 5 g~GC~is~~ASaS~~teli--kGktl~Ea~~i~~~~ 38 (89)
..|+.-+ -++.++..++ +|++++|+..+-...
T Consensus 242 ttGAGDa--f~a~~~~~l~~~~g~~l~~a~~~A~~~ 275 (313)
T 3ewm_A 242 TTGAGDA--FMAALLVGILKLKGLDLLKLGKFANLV 275 (313)
T ss_dssp CTTHHHH--HHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred CCCchHH--HHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3444443 2366777777 999999999887753
No 76
>2rbc_A Sugar kinase, AGR_C_4560P; ribokinase family, ATP-binding site, structura genomics, PSI-2, protein structu initiative; HET: MSE GOL; 1.90A {Agrobacterium tumefaciens str}
Probab=20.02 E-value=56 Score=23.39 Aligned_cols=31 Identities=10% Similarity=0.130 Sum_probs=22.7
Q ss_pred cchhhhHHHHHHHHHHHHcCCCHHHHHcchhHH
Q 034618 6 RGFTNLYGVSNVSATEWVKGKQIQEVLSIKNTE 38 (89)
Q Consensus 6 ~GC~is~~ASaS~~telikGktl~Ea~~i~~~~ 38 (89)
.|+.-+ -++.++..+++|++++++..+-...
T Consensus 272 tGAGDa--F~ag~~~~l~~g~~~~~a~~~A~~~ 302 (343)
T 2rbc_A 272 LAAGDI--FHGTFALAMAEGMQSRAAVRLSSVA 302 (343)
T ss_dssp TTHHHH--HHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CChHHH--HHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 344443 2367888899999999999887753
Done!