BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034623
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZG4|PSK4_ARATH Putative phytosulfokines 4 OS=Arabidopsis thaliana GN=PSK4 PE=3
SV=1
Length = 87
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 5/84 (5%)
Query: 8 LCLIIALVFFFFFSSQASAIRPEPAFP---DVTPLKNLHGDVEEATKKVDQTVEDSCDGV 64
L +I + + + RPEPA+ +P L +E K+ + +SCD
Sbjct: 4 LSTLITIALLLCATMLTCSARPEPAYFASFTTSPADTL--SLEMIESKLHEVAGESCDKE 61
Query: 65 EGDDCLMRRTLAAHIDYIYTQKSK 88
+ +DCL+RRTL AH+DYIYT K+
Sbjct: 62 DDEDCLVRRTLTAHLDYIYTHKNN 85
>sp|Q9FEB4|PSK5_ARATH Phytosulfokines 5 OS=Arabidopsis thaliana GN=PSK5 PE=2 SV=1
Length = 77
Score = 52.8 bits (125), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 32/87 (36%), Positives = 46/87 (52%), Gaps = 13/87 (14%)
Query: 4 KATTLCLIIALVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDG 63
K TT IIAL+ + ++ + P +P+ E + KK++Q E C+G
Sbjct: 3 KFTTFLCIIALLLCSTLTHASARLNPTSVYPE-----------ENSFKKLEQG-EVICEG 50
Query: 64 VEGDDC-LMRRTLAAHIDYIYTQKSKP 89
V ++C L+RRTL AH DYIYTQ P
Sbjct: 51 VGEEECFLIRRTLVAHTDYIYTQNHNP 77
>sp|O81003|PSK2_ARATH Phytosulfokines 2 OS=Arabidopsis thaliana GN=PSK2 PE=2 SV=1
Length = 87
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 4/77 (5%)
Query: 15 VFFFFFSSQASAIRPEPAFP-DVTPLKNLHGDVEEATKKVD--QTVEDSCDGVEGDDCLM 71
+ S+ RPEPA +T + ++ K+D V+++C G + +DCLM
Sbjct: 10 IALLLCSTLMCTARPEPAISISITTAADPCNMEKKIEGKLDDMHMVDENC-GADDEDCLM 68
Query: 72 RRTLAAHIDYIYTQKSK 88
RRTL AH DYIYTQK K
Sbjct: 69 RRTLVAHTDYIYTQKKK 85
>sp|Q9M2Y0|PSK3_ARATH Phytosulfokines 3 OS=Arabidopsis thaliana GN=PSK3 PE=2 SV=2
Length = 79
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 2/56 (3%)
Query: 36 VTPLKNLHGDVEEATKKV--DQTVEDSCDGVEGDDCLMRRTLAAHIDYIYTQKSKP 89
+TP E + K++ D+ E+SC+G+ ++CL+RR+L H DYIYTQ KP
Sbjct: 24 LTPTTTTALSRENSVKEIEGDKVEEESCNGIGEEECLIRRSLVLHTDYIYTQNHKP 79
>sp|Q9FS10|PSK_ASPOF Phytosulfokines OS=Asparagus officinalis GN=PSK PE=1 SV=1
Length = 75
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 19/32 (59%), Positives = 26/32 (81%)
Query: 58 EDSCDGVEGDDCLMRRTLAAHIDYIYTQKSKP 89
+++C+GV ++CLMRRTL AH+DYIYTQ P
Sbjct: 44 DEACEGVGEEECLMRRTLTAHVDYIYTQDHNP 75
>sp|Q9FRF9|PSK3_ORYSJ Phytosulfokines 3 OS=Oryza sativa subsp. japonica GN=PSK3 PE=1
SV=1
Length = 75
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 36/86 (41%), Gaps = 16/86 (18%)
Query: 1 MAYKATTLCLIIALV-FFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVED 59
M+ K +CL+ L+ + I P A V N G VE
Sbjct: 1 MSPKVIAICLVALLLPISISHGGRIGPIEPSKASSKVVERGNYDGRVE------------ 48
Query: 60 SCDGVEGDDCLMRRTLAAHIDYIYTQ 85
G E DDCL+ R L AH+DYIYTQ
Sbjct: 49 ---GCEEDDCLVERLLVAHLDYIYTQ 71
>sp|Q9LMY9|PSK1_ARATH Phytosulfokines 1 OS=Arabidopsis thaliana GN=PSK1 PE=2 SV=3
Length = 87
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 19/82 (23%)
Query: 14 LVFFF----FFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVE---- 65
L+FFF S +S I E F P H E+A+ K D+ DGVE
Sbjct: 9 LIFFFTLVLLLSMASSVILREDGFAPPKPSPTTH---EKASTKGDR------DGVECKNS 59
Query: 66 --GDDCLMRRTLAAHIDYIYTQ 85
++CL+++T+AAH DYIYTQ
Sbjct: 60 DSEEECLVKKTVAAHTDYIYTQ 81
>sp|Q8LA14|PSK6_ARATH Putative phytosulfokines 6 OS=Arabidopsis thaliana GN=PSK6 PE=2
SV=2
Length = 81
Score = 42.4 bits (98), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 7 TLCLIIALVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVEG 66
+LCL V F S+ +SAIR ++ PL + E++ K+ + C EG
Sbjct: 4 SLCLA---VLFLILSTSSSAIRRGKEDQEINPLVSATSVEEDSVNKLMGM--EYCG--EG 56
Query: 67 DD-CLMRRTLA-AHIDYIYTQKSK 88
D+ CL RR + +H+DYIYTQ K
Sbjct: 57 DEECLRRRMMTESHLDYIYTQHHK 80
>sp|O81277|PSK5_ORYSJ Phytosulfokines 5 OS=Oryza sativa subsp. japonica GN=PSK5 PE=1
SV=1
Length = 102
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 5/74 (6%)
Query: 18 FFFSSQASAIRPEP--AFPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVE--GDDCLMRR 73
FFFS ASA RP P A ++ G+ +E ++ + E++ E ++C+ RR
Sbjct: 25 FFFSHCASAARPLPASAAAELVLQDGATGNGDEVSELMGAAEEEAAGLCEEGNEECVERR 84
Query: 74 TLA-AHIDYIYTQK 86
L AH+DYIYTQK
Sbjct: 85 MLRDAHLDYIYTQK 98
>sp|A2ZBG5|PSK2_ORYSI Phytosulfokines 2 OS=Oryza sativa subsp. indica GN=PSK2 PE=1 SV=1
Length = 119
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Query: 63 GVEGDDCLMRRTLA-AHIDYIYTQ-KSKP 89
G D+C+ RR L+ AH+DYIYTQ K+KP
Sbjct: 91 GKNNDECVQRRLLSDAHLDYIYTQHKNKP 119
>sp|Q0IUL4|PSK2_ORYSJ Phytosulfokines 2 OS=Oryza sativa subsp. japonica GN=PSK2 PE=1 SV=1
Length = 119
Score = 35.4 bits (80), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%), Gaps = 2/29 (6%)
Query: 63 GVEGDDCLMRRTLA-AHIDYIYTQ-KSKP 89
G D+C+ RR L+ AH+DYIYTQ K+KP
Sbjct: 91 GKNNDECVQRRLLSDAHLDYIYTQHKNKP 119
>sp|Q01846|MDM1_YEAST Structural protein MDM1 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=MDM1 PE=1 SV=3
Length = 1127
Score = 33.5 bits (75), Expect = 0.44, Method: Composition-based stats.
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 14 LVFFFFFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVED 59
+F FF S +P+P F D+ P + DV++ K V+ ++D
Sbjct: 38 FAYFVFFKSLPDLPKPQPRFVDIVPESSNTVDVDKELKSVEGLIQD 83
>sp|Q9AR88|PSK4_ORYSJ Phytosulfokines 4 OS=Oryza sativa subsp. japonica GN=PSK4 PE=1
SV=1
Length = 83
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/17 (76%), Positives = 14/17 (82%)
Query: 70 LMRRTLAAHIDYIYTQK 86
L RRTL AH DYIYTQ+
Sbjct: 64 LARRTLTAHTDYIYTQQ 80
>sp|B5ZAZ4|RPOC_UREU1 DNA-directed RNA polymerase subunit beta' OS=Ureaplasma urealyticum
serovar 10 (strain ATCC 33699 / Western) GN=rpoC PE=3
SV=1
Length = 1305
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 33 FPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVEGDDCLMRRTLAAHIDYIY 83
FP + +KNL+GD + + +++ D + L ++TL+ IDY+Y
Sbjct: 667 FPYINDVKNLYGDNQFEIIGMHESILDYLKAYNLKEPLTKKTLSTVIDYLY 717
>sp|Q9PQV5|RPOC_UREPA DNA-directed RNA polymerase subunit beta' OS=Ureaplasma parvum
serovar 3 (strain ATCC 700970) GN=rpoC PE=3 SV=1
Length = 1305
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 33 FPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVEGDDCLMRRTLAAHIDYIY 83
FP + +KNL+G+ + + +++ D + L ++TL+ IDY+Y
Sbjct: 667 FPYINDVKNLYGENQFEIIGMHESILDYLKAYNLKEPLTKKTLSTVIDYLY 717
>sp|B1AIH6|RPOC_UREP2 DNA-directed RNA polymerase subunit beta' OS=Ureaplasma parvum
serovar 3 (strain ATCC 27815 / 27 / NCTC 11736) GN=rpoC
PE=3 SV=1
Length = 1305
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 14/51 (27%), Positives = 28/51 (54%)
Query: 33 FPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVEGDDCLMRRTLAAHIDYIY 83
FP + +KNL+G+ + + +++ D + L ++TL+ IDY+Y
Sbjct: 667 FPYINDVKNLYGENQFEIIGMHESILDYLKAYNLKEPLTKKTLSTVIDYLY 717
>sp|Q59334|HEM2_CHLP8 Delta-aminolevulinic acid dehydratase OS=Chlorobaculum parvum
(strain NCIB 8327) GN=hemB PE=1 SV=1
Length = 328
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 19 FFSSQASAIRPEPAFPDVTPLKNLHGDVEEATKKVDQTVEDSCDGVEGDDCLMRRTLAAH 78
F+ A+ P F D + + + EEA K+V+ D VEG D +M + A+
Sbjct: 205 FYGPFRDALHSAPQFGDKSTYQMNPANTEEAMKEVE------LDIVEGADIVMVKPGLAY 258
Query: 79 IDYIYTQKSK 88
+D ++ K +
Sbjct: 259 LDIVWRTKER 268
>sp|P60052|SODC_PANTR Superoxide dismutase [Cu-Zn] OS=Pan troglodytes GN=SOD1 PE=2 SV=2
Length = 154
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 14/61 (22%)
Query: 32 AFPDVTPLKNLHGDVEEATKKV--------------DQTVEDSCDGVEGDDCLMRRTLAA 77
A P PL HG ++ + V D ++EDS + GD C++ RTL
Sbjct: 61 AGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVV 120
Query: 78 H 78
H
Sbjct: 121 H 121
>sp|P00441|SODC_HUMAN Superoxide dismutase [Cu-Zn] OS=Homo sapiens GN=SOD1 PE=1 SV=2
Length = 154
Score = 29.6 bits (65), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 26/61 (42%), Gaps = 14/61 (22%)
Query: 32 AFPDVTPLKNLHGDVEEATKKV--------------DQTVEDSCDGVEGDDCLMRRTLAA 77
A P PL HG ++ + V D ++EDS + GD C++ RTL
Sbjct: 61 AGPHFNPLSRKHGGPKDEERHVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGRTLVV 120
Query: 78 H 78
H
Sbjct: 121 H 121
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 31,622,607
Number of Sequences: 539616
Number of extensions: 1105791
Number of successful extensions: 3047
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 3028
Number of HSP's gapped (non-prelim): 22
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)