Query 034623
Match_columns 89
No_of_seqs 96 out of 98
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 07:26:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1ef4_A Subunit N, DNA-directed 59.3 2.2 7.5E-05 26.1 0.2 12 71-82 44-55 (55)
2 1twf_J DNA-directed RNA polyme 49.8 4.4 0.00015 25.8 0.5 11 72-82 47-57 (70)
3 4ayb_N DNA-directed RNA polyme 31.7 12 0.0004 23.5 0.3 12 72-83 46-57 (66)
4 3o81_A Beta-2-microglobulin; I 25.7 19 0.00066 23.1 0.6 11 1-12 1-11 (119)
5 3jts_B Beta-2-microglobulin; a 21.4 24 0.00082 22.7 0.4 11 1-12 1-11 (119)
6 2dw3_A Intrinsic membrane prot 19.0 94 0.0032 20.0 2.8 32 6-40 33-64 (77)
7 1ups_A Glcnac-alpha-1,4-GAL-re 17.4 51 0.0017 25.6 1.5 7 26-32 16-22 (420)
8 3m5b_A Zinc finger and BTB dom 17.0 33 0.0011 21.6 0.3 12 74-85 72-83 (119)
9 2lif_A Core protein P21; signa 18.4 38 0.0013 17.9 0.0 12 7-20 7-18 (27)
10 3fkc_A Transcriptional regulat 13.5 47 0.0016 20.5 0.3 14 73-86 76-89 (116)
No 1
>1ef4_A Subunit N, DNA-directed RNA polymerase; three helix bundle, zinc binding, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: a.4.11.1
Probab=59.31 E-value=2.2 Score=26.07 Aligned_cols=12 Identities=33% Similarity=0.564 Sum_probs=10.4
Q ss_pred HHHHHhhhhhhh
Q 034623 71 MRRTLAAHIDYI 82 (89)
Q Consensus 71 ~rr~l~ah~DYI 82 (89)
=|||+.+|.|.|
T Consensus 44 CRRMlLthvdli 55 (55)
T 1ef4_A 44 CRRMLISHVETW 55 (55)
T ss_dssp HHHHHTTTCCCC
T ss_pred ccccceeheecC
Confidence 389999999987
No 2
>1twf_J DNA-directed RNA polymerases I, II, and III 8.3 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.11.1 PDB: 1i3q_J 1i6h_J 1k83_J* 1nik_J 1nt9_J 1pqv_J 1r5u_J 1r9s_J* 1r9t_J* 1sfo_J* 1twa_J* 1twc_J* 1i50_J* 1twg_J* 1twh_J* 1wcm_J 1y1v_J 1y1w_J 1y1y_J 1y77_J* ...
Probab=49.84 E-value=4.4 Score=25.77 Aligned_cols=11 Identities=45% Similarity=0.872 Sum_probs=10.3
Q ss_pred HHHHhhhhhhh
Q 034623 72 RRTLAAHIDYI 82 (89)
Q Consensus 72 rr~l~ah~DYI 82 (89)
||+|.+|.|.|
T Consensus 47 RrMllthvdli 57 (70)
T 1twf_J 47 RRMILTHVDLI 57 (70)
T ss_dssp HHHHHTBCCTH
T ss_pred hhHHHHHHHHH
Confidence 89999999988
No 3
>4ayb_N DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_N 2y0s_N 2waq_N 4b1o_N 4b1p_O 2pmz_N 3hkz_N
Probab=31.68 E-value=12 Score=23.53 Aligned_cols=12 Identities=58% Similarity=0.800 Sum_probs=10.4
Q ss_pred HHHHhhhhhhhc
Q 034623 72 RRTLAAHIDYIY 83 (89)
Q Consensus 72 rr~l~ah~DYIY 83 (89)
||++.+|.|.|-
T Consensus 46 RRm~LtHVdlid 57 (66)
T 4ayb_N 46 RRMLLSHIDIIS 57 (66)
T ss_dssp HHHHHTCCCCTT
T ss_pred hhhHHHHHHHHH
Confidence 799999999873
No 4
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, MHC class I molecule from B21 chicken, immune SYST; 2.00A {Gallus gallus}
Probab=25.73 E-value=19 Score=23.12 Aligned_cols=11 Identities=36% Similarity=0.603 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHH
Q 034623 1 MAYKATTLCLII 12 (89)
Q Consensus 1 MasK~talflvA 12 (89)
|+ |+.++++++
T Consensus 1 ~~-~~~~~~~~~ 11 (119)
T 3o81_A 1 MG-KAAAVVLVT 11 (119)
T ss_dssp ------------
T ss_pred Cc-hhHHHHHHH
Confidence 55 777777766
No 5
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune response, MHC I membrane, transmembrane, disease mutation; 2.80A {Homo sapiens}
Probab=21.41 E-value=24 Score=22.67 Aligned_cols=11 Identities=18% Similarity=0.549 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHH
Q 034623 1 MAYKATTLCLII 12 (89)
Q Consensus 1 MasK~talflvA 12 (89)
|+ |..++++++
T Consensus 1 ~~-~~~~~~~~~ 11 (119)
T 3jts_B 1 MS-RSVALAVLA 11 (119)
T ss_dssp ------------
T ss_pred Cc-hhhHHHHHH
Confidence 55 777777766
No 6
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=18.99 E-value=94 Score=19.98 Aligned_cols=32 Identities=16% Similarity=0.072 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCCccc
Q 034623 6 TTLCLIIALVFFFFFSSQASAIRPEPAFPDVTPLK 40 (89)
Q Consensus 6 talflvAaL~LL~~t~~~t~AARp~P~~~~~~~~~ 40 (89)
++.|+++.+ +++.. +...+|--|..+...|+.
T Consensus 33 AAv~f~~~~-~~lv~--l~~iG~~LPE~Sr~aP~P 64 (77)
T 2dw3_A 33 AGGVFFGTL-LLIGF--FRVVGRMLPIQENQAPAP 64 (77)
T ss_dssp HHHHHHHHH-HHHHH--HHHHHHCTTTTCSSCSSC
T ss_pred HHHHHHHHH-HHHHH--HHHHHHhCchhcccCCCC
Confidence 345555533 22222 334455555544444433
No 7
>1ups_A Glcnac-alpha-1,4-GAL-releasing endo-beta- galactosidase; endo-galactosidase, glycosyl hydrolase, PSI, protein structure initiative; 1.82A {Clostridium perfringens} SCOP: b.29.1.2 b.42.2.3
Probab=17.36 E-value=51 Score=25.61 Aligned_cols=7 Identities=29% Similarity=0.330 Sum_probs=2.6
Q ss_pred hcCCCCC
Q 034623 26 AIRPEPA 32 (89)
Q Consensus 26 AARp~P~ 32 (89)
++-+.|+
T Consensus 16 ~~~~~p~ 22 (420)
T 1ups_A 16 KAKDFPA 22 (420)
T ss_dssp -CCSCCC
T ss_pred hccCCCC
Confidence 3444444
No 8
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0
Probab=16.98 E-value=33 Score=21.59 Aligned_cols=12 Identities=25% Similarity=0.733 Sum_probs=7.6
Q ss_pred HHhhhhhhhccC
Q 034623 74 TLAAHIDYIYTQ 85 (89)
Q Consensus 74 ~l~ah~DYIYTq 85 (89)
.+.+=+|||||-
T Consensus 72 ~f~~ll~fiYtg 83 (119)
T 3m5b_A 72 TFAQLLNFVYGE 83 (119)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHcCC
Confidence 334557888874
No 9
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=18.36 E-value=38 Score=17.95 Aligned_cols=12 Identities=17% Similarity=0.298 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHhh
Q 034623 7 TLCLIIALVFFFFF 20 (89)
Q Consensus 7 alflvAaL~LL~~t 20 (89)
.+|++| | |.|++
T Consensus 7 siFlLa-L-lscLt 18 (27)
T 2lif_A 7 SIFLLA-L-LSCIT 18 (27)
Confidence 356666 5 55665
No 10
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A
Probab=13.46 E-value=47 Score=20.51 Aligned_cols=14 Identities=36% Similarity=0.750 Sum_probs=9.7
Q ss_pred HHHhhhhhhhccCC
Q 034623 73 RTLAAHIDYIYTQK 86 (89)
Q Consensus 73 r~l~ah~DYIYTq~ 86 (89)
..+..=++||||-+
T Consensus 76 ~~f~~~l~~~Ytg~ 89 (116)
T 3fkc_A 76 EIFAEILNYIYSSK 89 (116)
T ss_dssp HHHHHHHHHHTTSC
T ss_pred HHHHHHHHhhcCCC
Confidence 44556678999864
Done!