Query 034623
Match_columns 89
No_of_seqs 96 out of 98
Neff 3.5
Searched_HMMs 13730
Date Mon Mar 25 07:26:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034623.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034623hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1twfj_ a.4.11.1 (J:) RNA poly 25.1 9.1 0.00066 22.4 0.5 12 72-83 47-58 (65)
2 d1ef4a_ a.4.11.1 (A:) RNA poly 12.4 26 0.0019 19.7 0.4 9 72-80 45-53 (55)
3 d1buoa_ d.42.1.1 (A:) Promyelo 9.6 33 0.0024 20.3 0.2 12 75-86 75-86 (121)
4 d1r29a_ d.42.1.1 (A:) B-cell l 9.1 36 0.0026 19.8 0.2 13 74-86 76-88 (122)
5 d351ca_ a.3.1.1 (A:) Cytochrom 6.5 63 0.0046 17.2 0.4 11 76-86 72-82 (82)
6 d1deca_ g.3.15.2 (A:) Decorsin 6.4 44 0.0032 17.5 -0.3 9 61-69 7-15 (39)
7 d1akoa_ d.151.1.1 (A:) DNA-rep 6.0 40 0.0029 19.3 -0.7 8 77-84 226-233 (268)
8 d1wf6a_ c.15.1.5 (A:) DNA topo 5.9 61 0.0044 19.1 0.1 19 67-85 110-128 (132)
9 d1fcdc1 a.3.1.4 (C:1-80) Flavo 5.7 1.2E+02 0.0086 15.9 1.4 15 75-89 66-80 (80)
10 d1alua_ a.26.1.1 (A:) Interleu 5.6 1.2E+02 0.0088 19.5 1.6 18 58-75 52-71 (166)
No 1
>d1twfj_ a.4.11.1 (J:) RNA polymerase subunit RPB10 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.06 E-value=9.1 Score=22.40 Aligned_cols=12 Identities=42% Similarity=0.725 Sum_probs=10.4
Q ss_pred HHHHhhhhhhhc
Q 034623 72 RRTLAAHIDYIY 83 (89)
Q Consensus 72 rr~l~ah~DYIY 83 (89)
||++.+|.|.|-
T Consensus 47 Rrm~Lshvdlid 58 (65)
T d1twfj_ 47 RRMILTHVDLIE 58 (65)
T ss_dssp HHHHHTBCCTHH
T ss_pred hhHHHHHHHHHH
Confidence 899999999873
No 2
>d1ef4a_ a.4.11.1 (A:) RNA polymerase subunit RPB10 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=12.37 E-value=26 Score=19.75 Aligned_cols=9 Identities=44% Similarity=0.922 Sum_probs=8.0
Q ss_pred HHHHhhhhh
Q 034623 72 RRTLAAHID 80 (89)
Q Consensus 72 rr~l~ah~D 80 (89)
||++..|.|
T Consensus 45 RRm~LshVD 53 (55)
T d1ef4a_ 45 RRMLISHVE 53 (55)
T ss_dssp HHHHTTTCC
T ss_pred chhHHhccc
Confidence 889999988
No 3
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.63 E-value=33 Score=20.26 Aligned_cols=12 Identities=25% Similarity=0.614 Sum_probs=8.8
Q ss_pred HhhhhhhhccCC
Q 034623 75 LAAHIDYIYTQK 86 (89)
Q Consensus 75 l~ah~DYIYTq~ 86 (89)
+.+=++||||-+
T Consensus 75 f~~ll~~~Ytg~ 86 (121)
T d1buoa_ 75 FQQILEYAYTAT 86 (121)
T ss_dssp HHHHHHHHHHSC
T ss_pred HHHHHHheEccc
Confidence 445589999875
No 4
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.10 E-value=36 Score=19.76 Aligned_cols=13 Identities=23% Similarity=0.672 Sum_probs=9.7
Q ss_pred HHhhhhhhhccCC
Q 034623 74 TLAAHIDYIYTQK 86 (89)
Q Consensus 74 ~l~ah~DYIYTq~ 86 (89)
.+.+=++||||.+
T Consensus 76 ~f~~ll~~~Ytg~ 88 (122)
T d1r29a_ 76 GFNILLDFMYTSR 88 (122)
T ss_dssp HHHHHHHHHHHSC
T ss_pred HHHHHHhhhcCCe
Confidence 4556689999874
No 5
>d351ca_ a.3.1.1 (A:) Cytochrome c551 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=6.52 E-value=63 Score=17.22 Aligned_cols=11 Identities=18% Similarity=0.389 Sum_probs=7.3
Q ss_pred hhhhhhhccCC
Q 034623 76 AAHIDYIYTQK 86 (89)
Q Consensus 76 ~ah~DYIYTq~ 86 (89)
.+=.+||.+|+
T Consensus 72 ~~la~Yi~SlK 82 (82)
T d351ca_ 72 QTLAKWVLSQK 82 (82)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHhcC
Confidence 34567888775
No 6
>d1deca_ g.3.15.2 (A:) Decorsin {North american leech (Macrobdella decora) [TaxId: 6405]}
Probab=6.38 E-value=44 Score=17.51 Aligned_cols=9 Identities=33% Similarity=1.202 Sum_probs=3.5
Q ss_pred cCCCCchhH
Q 034623 61 CDGVEGDDC 69 (89)
Q Consensus 61 c~~~~~eeC 69 (89)
|.|.+.|.|
T Consensus 7 cqgddqekc 15 (39)
T d1deca_ 7 CQGDDQEKC 15 (39)
T ss_dssp CCSSCSSCE
T ss_pred ccCcchhhc
Confidence 444333333
No 7
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III {Escherichia coli [TaxId: 562]}
Probab=6.03 E-value=40 Score=19.32 Aligned_cols=8 Identities=25% Similarity=0.480 Sum_probs=6.2
Q ss_pred hhhhhhcc
Q 034623 77 AHIDYIYT 84 (89)
Q Consensus 77 ah~DYIYT 84 (89)
.++|||+.
T Consensus 226 ~RIDyI~~ 233 (268)
T d1akoa_ 226 LRIDLLLA 233 (268)
T ss_dssp BCCEEEEE
T ss_pred cEEEEEEe
Confidence 36899985
No 8
>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.85 E-value=61 Score=19.08 Aligned_cols=19 Identities=16% Similarity=0.359 Sum_probs=15.9
Q ss_pred hhHHHHHHHhhhhhhhccC
Q 034623 67 DDCLMRRTLAAHIDYIYTQ 85 (89)
Q Consensus 67 eeCl~rr~l~ah~DYIYTq 85 (89)
++|+.++.+.-.-+|++.+
T Consensus 110 ~~c~~~~~~l~~~~Y~~~~ 128 (132)
T d1wf6a_ 110 LECFSKGYMLSEEPYIHSG 128 (132)
T ss_dssp HHHHHHSSCCCSGGGBCCC
T ss_pred HHHHHcCCcCCHHhCcCCC
Confidence 6899999988888998854
No 9
>d1fcdc1 a.3.1.4 (C:1-80) Flavocytochrome c sulfide dehydrogenase, FCSD, cytochrome subunit {Purple phototrophic bacterium (Chromatium vinosum) [TaxId: 1049]}
Probab=5.70 E-value=1.2e+02 Score=15.89 Aligned_cols=15 Identities=20% Similarity=0.363 Sum_probs=11.0
Q ss_pred HhhhhhhhccCCCCC
Q 034623 75 LAAHIDYIYTQKSKP 89 (89)
Q Consensus 75 l~ah~DYIYTq~~~p 89 (89)
+.+=..||-+|.-+|
T Consensus 66 i~~la~Y~~sq~~kP 80 (80)
T d1fcdc1 66 FEKMAGYFKQQTYQP 80 (80)
T ss_dssp HHHHHHHHHTSCCCC
T ss_pred HHHHHHHHHhCCCCC
Confidence 345567999998887
No 10
>d1alua_ a.26.1.1 (A:) Interleukin-6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.56 E-value=1.2e+02 Score=19.54 Aligned_cols=18 Identities=28% Similarity=0.802 Sum_probs=13.1
Q ss_pred cccc--CCCCchhHHHHHHH
Q 034623 58 EDSC--DGVEGDDCLMRRTL 75 (89)
Q Consensus 58 ~~~c--~~~~~eeCl~rr~l 75 (89)
...| .|-+.|.||.|=+-
T Consensus 52 ~dgC~~~gfn~e~CL~ri~~ 71 (166)
T d1alua_ 52 KDGCFQSGFNEETCLVKIIT 71 (166)
T ss_dssp GGTCSSTTCCHHHHHHHHHH
T ss_pred cCCCCccccCHHHHHHHHHH
Confidence 4469 46778999988654
Done!