BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034626
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O95562|SFT2B_HUMAN Vesicle transport protein SFT2B OS=Homo sapiens GN=SFT2D2 PE=1
SV=1
Length = 160
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 46/78 (58%), Gaps = 5/78 (6%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK- 61
KLK++++G + + S L + + SLS++ R+ F AC G++C L ++ P K
Sbjct: 3 KLKKVLSGQDTEDRSGLSEVVEA-SSLSWSTRIKGFIACFAIGILCSLLGTVLLWVPRKG 61
Query: 62 ---FAILFTFGNLLAVGS 76
FA+ +TFGN+ ++GS
Sbjct: 62 LHLFAVFYTFGNIASIGS 79
>sp|Q8VD57|SFT2B_MOUSE Vesicle transport protein SFT2B OS=Mus musculus GN=Sft2d2 PE=1
SV=1
Length = 159
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 45/78 (57%), Gaps = 5/78 (6%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK- 61
KLK++++G + + S L + + SLS+ R+ F AC G++C L ++ P K
Sbjct: 3 KLKKVLSGQDTEDRSGLSEVVEA-SSLSWGTRIKGFIACFALGILCSVLGTLLLWVPRKG 61
Query: 62 ---FAILFTFGNLLAVGS 76
FA+ +T GN++++GS
Sbjct: 62 LGLFAVFYTLGNIMSIGS 79
>sp|Q5SSN7|SFT2A_MOUSE Vesicle transport protein SFT2A OS=Mus musculus GN=Sft2d1 PE=2
SV=1
Length = 159
Score = 38.9 bits (89), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 4/77 (5%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIK- 61
KL+++++G ++ E+ D SLS+ R+ F C +AG+ FL + P
Sbjct: 3 KLRRVLSGQDDEEQGLTAQVLDA-SSLSFNTRLKWFVICFVAGIFFSFLGTGLLWLPNGM 61
Query: 62 --FAILFTFGNLLAVGS 76
FA+ +T GNL A+ S
Sbjct: 62 KLFAVFYTLGNLAALAS 78
>sp|Q5U3Y5|SFT2A_RAT Vesicle transport protein SFT2A OS=Rattus norvegicus GN=Sft2d1
PE=2 SV=1
Length = 159
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP--I 60
KL+++++G ++ E+ D SLS+ R+ F C +AG+ L + P +
Sbjct: 3 KLRRVLSGQDDEEQGLTAQVLDA-SSLSFNTRLKWFVICFVAGIFFSILGTGLLWLPNGV 61
Query: 61 K-FAILFTFGNLLAVGS 76
K FA+ +T GNL A+ S
Sbjct: 62 KLFAVFYTLGNLAALAS 78
>sp|Q8WV19|SFT2A_HUMAN Vesicle transport protein SFT2A OS=Homo sapiens GN=SFT2D1 PE=1
SV=1
Length = 159
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 4/77 (5%)
Query: 3 KLKQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRP--I 60
KL+++++G ++ E+ D SLS+ R+ FA C + G+ L + P I
Sbjct: 3 KLRRVLSGQDDEEQGLTAQVLDA-SSLSFNTRLKWFAICFVCGVFFSILGTGLLWLPGGI 61
Query: 61 K-FAILFTFGNLLAVGS 76
K FA+ +T GNL A+ S
Sbjct: 62 KLFAVFYTLGNLAALAS 78
>sp|Q9P6K1|SFT2_SCHPO Protein transport protein sft2 OS=Schizosaccharomyces pombe (strain
972 / ATCC 24843) GN=sft2 PE=3 SV=1
Length = 201
Score = 36.2 bits (82), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 28 SLSYTQRMYAFAACLLAGLVCM----FLSIIVFVRPIKFAILFTFGNLLAV 74
SLS +R F CLL L C F+ ++ ++P KF +L+T G+LLAV
Sbjct: 61 SLSRWERYMLFGICLLGSLACYAIACFMFPVLVLKPRKFVLLWTMGSLLAV 111
>sp|P38166|SFT2_YEAST Protein transport protein SFT2 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=SFT2 PE=1 SV=1
Length = 215
Score = 35.8 bits (81), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 6/65 (9%)
Query: 15 EESFLEDESDGICSLSYTQRMYAFAACLLAG-----LVCMFLSIIVFVRPIKFAILFTFG 69
+ ++D+ LS T+RM F C L G +C FL ++ +P KF +L+T G
Sbjct: 61 RQDLVQDQEPSWFQLSRTERMVLFV-CFLLGATACFTLCTFLFPVLAAKPRKFGLLWTMG 119
Query: 70 NLLAV 74
+LL V
Sbjct: 120 SLLFV 124
>sp|Q54U35|Y4142_DICDI Uncharacterized transmembrane protein DDB_G0281339
OS=Dictyostelium discoideum GN=DDB_G0281339 PE=4 SV=1
Length = 224
Score = 29.3 bits (64), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 12 EEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFTFGNL 71
EE+E D+ G C +T + CL+AG V +F+ +F I F + N
Sbjct: 12 EEKEIKMDRDKCSGACVAIWTWKTIVRLICLIAGGVQVFMGGYIFY-SISFTKDHSVQNY 70
Query: 72 LAVGSLRYRAC 82
L++ + + AC
Sbjct: 71 LSLSVVGFYAC 81
>sp|Q91514|VACHT_TORTO Vesicular acetylcholine transporter OS=Torpedo torpedo PE=2 SV=1
Length = 511
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 42 LLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGS 76
LL GL MF S I F +AILF +L +GS
Sbjct: 138 LLIGLTIMFFSTITFAFGESYAILFAARSLQGLGS 172
>sp|Q91498|VACHT_TORMA Vesicular acetylcholine transporter OS=Torpedo marmorata PE=2 SV=2
Length = 511
Score = 29.3 bits (64), Expect = 8.0, Method: Composition-based stats.
Identities = 16/35 (45%), Positives = 19/35 (54%)
Query: 42 LLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGS 76
LL GL MF S I F +AILF +L +GS
Sbjct: 138 LLIGLTIMFFSTITFAFGESYAILFAARSLQGLGS 172
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.330 0.141 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,798,121
Number of Sequences: 539616
Number of extensions: 974017
Number of successful extensions: 2640
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 2627
Number of HSP's gapped (non-prelim): 19
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)