Query 034626
Match_columns 89
No_of_seqs 103 out of 314
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 04:48:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034626.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034626hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2887 Membrane protein invol 99.9 6.3E-26 1.4E-30 163.4 7.2 89 1-89 1-104 (175)
2 COG5102 SFT2 Membrane protein 99.5 9.1E-15 2E-19 106.3 5.6 68 21-88 54-125 (201)
3 PF04178 Got1: Got1/Sft2-like 99.4 1.8E-13 3.9E-18 92.7 5.0 48 40-88 5-52 (118)
4 PF14145 YrhK: YrhK-like prote 84.1 5.3 0.00012 24.0 5.4 43 40-86 10-53 (59)
5 PF11026 DUF2721: Protein of u 73.1 4.1 8.8E-05 27.7 2.8 57 24-80 50-115 (130)
6 KOG1743 Ferric reductase-like 66.2 11 0.00024 26.6 3.8 42 41-86 13-54 (137)
7 PF07787 DUF1625: Protein of u 59.7 39 0.00085 25.0 6.0 26 18-43 171-196 (248)
8 COG1288 Predicted membrane pro 55.2 42 0.00092 28.2 5.9 69 5-75 247-317 (481)
9 PF05915 DUF872: Eukaryotic pr 54.5 65 0.0014 21.7 5.9 42 35-76 44-90 (115)
10 PF04156 IncA: IncA protein; 50.7 82 0.0018 21.9 6.6 25 30-55 1-25 (191)
11 PF14851 FAM176: FAM176 family 49.0 43 0.00093 23.9 4.5 37 47-83 5-43 (153)
12 PF13038 DUF3899: Domain of un 49.0 20 0.00044 22.5 2.6 14 41-54 75-88 (92)
13 PF10003 DUF2244: Integral mem 48.4 85 0.0018 21.4 6.3 19 26-44 4-22 (140)
14 COG5120 GOT1 Membrane protein 47.8 37 0.0008 23.6 3.8 40 42-85 14-53 (129)
15 PF03381 CDC50: LEM3 (ligand-e 47.0 22 0.00049 27.1 3.0 31 32-63 241-275 (278)
16 PF13150 DUF3989: Protein of u 44.1 53 0.0011 21.1 4.0 19 26-44 19-37 (85)
17 PF13131 DUF3951: Protein of u 42.1 30 0.00064 20.8 2.3 22 64-85 2-23 (53)
18 KOG3025 Mitochondrial F1F0-ATP 37.8 56 0.0012 22.9 3.5 24 34-57 112-135 (137)
19 PRK12585 putative monovalent c 34.1 96 0.0021 23.2 4.5 16 39-54 10-25 (197)
20 PF08566 Pam17: Mitochondrial 33.6 68 0.0015 23.5 3.6 59 25-84 29-97 (173)
21 PF11131 PhrC_PhrF: Rap-phr ex 31.8 52 0.0011 18.3 2.1 16 36-51 4-19 (37)
22 KOG1397 Ca2+/H+ antiporter VCX 30.9 78 0.0017 26.3 3.8 21 23-43 280-300 (441)
23 PF14181 YqfQ: YqfQ-like prote 29.9 16 0.00035 26.3 -0.2 13 1-13 88-101 (161)
24 PRK12675 putative monovalent c 29.7 1.7E+02 0.0037 19.4 5.1 44 39-82 4-54 (104)
25 COG2252 Xanthine/uracil/vitami 29.3 2.2E+02 0.0047 23.7 6.2 47 28-77 98-152 (436)
26 PRK12586 putative monovalent c 28.8 1.6E+02 0.0035 20.8 4.7 43 39-81 13-62 (145)
27 PRK06007 fliF flagellar MS-rin 28.6 60 0.0013 27.1 2.9 40 26-67 16-55 (542)
28 TIGR00054 RIP metalloprotease 27.7 89 0.0019 24.9 3.7 17 23-39 85-101 (420)
29 PF11085 YqhR: Conserved membr 27.2 2.1E+02 0.0045 21.0 5.2 45 21-67 9-59 (173)
30 PLN02797 phosphatidyl-N-dimeth 26.5 1E+02 0.0022 22.4 3.5 29 45-74 120-148 (164)
31 TIGR00206 fliF flagellar basal 26.4 78 0.0017 26.6 3.2 40 26-67 16-56 (555)
32 PF12273 RCR: Chitin synthesis 26.2 46 0.001 22.2 1.6 16 34-49 1-16 (130)
33 KOG2592 Tumor differentially e 26.0 55 0.0012 27.1 2.2 36 40-75 81-131 (426)
34 TIGR01666 YCCS hypothetical me 26.0 2.8E+02 0.0062 24.1 6.6 34 30-63 52-85 (704)
35 PF08229 SHR3_chaperone: ER me 24.3 1.2E+02 0.0025 22.5 3.5 54 28-81 4-78 (196)
36 KOG3393 Predicted membrane pro 24.3 2.8E+02 0.0061 20.0 5.3 55 26-81 84-147 (157)
37 PF15462 Barttin: Bartter synd 24.2 8.3 0.00018 29.0 -2.6 22 58-79 4-25 (224)
38 PF00858 ASC: Amiloride-sensit 23.8 1.1E+02 0.0024 23.1 3.5 30 27-56 16-45 (439)
39 PF04178 Got1: Got1/Sft2-like 23.5 2.3E+02 0.005 18.7 5.5 41 35-75 23-75 (118)
40 PRK12672 putative monovalent c 22.6 2.5E+02 0.0055 18.9 5.1 44 39-82 8-58 (118)
41 PF09472 MtrF: Tetrahydrometha 21.9 1.9E+02 0.0041 17.8 3.6 26 26-51 33-58 (64)
42 PF05255 UPF0220: Uncharacteri 21.5 3.1E+02 0.0067 19.6 6.9 55 26-81 92-156 (166)
43 PF06716 DUF1201: Protein of u 21.2 1.8E+02 0.0039 17.3 3.2 19 36-54 13-31 (54)
44 COG4605 CeuC ABC-type enteroch 20.7 3.1E+02 0.0067 21.9 5.4 43 39-81 135-194 (316)
45 TIGR01300 CPA3_mnhG_phaG monov 20.7 2.5E+02 0.0055 18.2 4.9 42 41-82 2-50 (97)
46 PF01102 Glycophorin_A: Glycop 20.3 1.6E+02 0.0035 20.2 3.3 27 28-55 60-86 (122)
47 PF07803 GSG-1: GSG1-like prot 20.2 2.1E+02 0.0045 19.8 3.8 27 28-54 1-27 (118)
No 1
>KOG2887 consensus Membrane protein involved in ER to Golgi transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=6.3e-26 Score=163.43 Aligned_cols=89 Identities=38% Similarity=0.662 Sum_probs=73.3
Q ss_pred Ccccc-------ccccCChhh---hhhhh-hcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccchhHHH
Q 034626 1 MWKLK-------QLVAGDEER---EESFL-EDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVFV----RPIKFAIL 65 (89)
Q Consensus 1 m~~l~-------~l~~~~~~~---e~~~~-~~~~~~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~~~----~p~kFA~l 65 (89)
|||++ +++|+|..| |+.+. .+.+++.++|||+||+++|++|++.|++|+.+|+++++ .|+|||++
T Consensus 1 md~l~~~~~~~~~~sg~d~~~~~~~~~~~~~~~~~~~fsLs~~qR~~~F~~cl~~gv~c~~l~~~lf~v~~~~~~kFal~ 80 (175)
T KOG2887|consen 1 MDKLRSARSANDVLSGQDPGDHQTEERSFTSDLQESTFSLSRTQRIMGFGICLAGGVLCFLLAMVLFPVLVVSPRKFALL 80 (175)
T ss_pred CchhhhhHhhhhcccCCCCCccccccccchhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccceeehh
Confidence 66764 566776433 22233 33455679999999999999999999999999999775 56699999
Q ss_pred HhhhHHHHHHhHHHhhchhhhhcC
Q 034626 66 FTFGNLLAVGSLRYRACSANKYDV 89 (89)
Q Consensus 66 yTlG~il~l~s~~fL~Gp~~q~k~ 89 (89)
||+||+++++||+||+||++|+|.
T Consensus 81 ~TlGnll~i~sf~fLmGP~~ql~~ 104 (175)
T KOG2887|consen 81 YTLGNLLAIGSFAFLMGPVSQLKH 104 (175)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHH
Confidence 999999999999999999999973
No 2
>COG5102 SFT2 Membrane protein involved in ER to Golgi transport [Intracellular trafficking and secretion]
Probab=99.54 E-value=9.1e-15 Score=106.28 Aligned_cols=68 Identities=26% Similarity=0.354 Sum_probs=60.0
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH----hhccchhHHHHhhhHHHHHHhHHHhhchhhhhc
Q 034626 21 DESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIV----FVRPIKFAILFTFGNLLAVGSLRYRACSANKYD 88 (89)
Q Consensus 21 ~~~~~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~----~~~p~kFA~lyTlG~il~l~s~~fL~Gp~~q~k 88 (89)
+.+.+.++||++||...|.+|+..+..|+.++.++ -++||||.++||+||++++.++++|+||.+|+|
T Consensus 54 ~~q~s~F~Lsr~eR~vlF~~ClLGa~ac~a~~~fmfpVl~lkPrkFiLlwTmgslLfvl~Fg~l~Gf~ayl~ 125 (201)
T COG5102 54 YFQSSEFGLSRFERAVLFSACLLGAGACSAFLYFMFPVLRLKPRKFILLWTMGSLLFVLMFGFLLGFRAYLE 125 (201)
T ss_pred ccccchhhHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCccceeeehhHHHHHHHHHHHHHHhHHHHHH
Confidence 34556899999999999999988888898666553 369999999999999999999999999999986
No 3
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=99.43 E-value=1.8e-13 Score=92.72 Aligned_cols=48 Identities=31% Similarity=0.667 Sum_probs=40.1
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHhhhHHHHHHhHHHhhchhhhhc
Q 034626 40 ACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLRYRACSANKYD 88 (89)
Q Consensus 40 ~c~~~g~~~~~ls~~~~~~p~kFA~lyTlG~il~l~s~~fL~Gp~~q~k 88 (89)
+|.++|.++.+++.++ .+|+|||++||+||+++++|++||+||++|+|
T Consensus 5 ~~~~l~~~~~~~~~~~-~~~~kFa~l~tlGnil~l~s~~fL~Gp~~q~k 52 (118)
T PF04178_consen 5 ICFFLSLIFFFLGVLL-FFPRKFAILYTLGNILFLASTFFLIGPKKQFK 52 (118)
T ss_pred HHHHHHHHHHHhhhhh-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555665555555444 89999999999999999999999999999987
No 4
>PF14145 YrhK: YrhK-like protein
Probab=84.07 E-value=5.3 Score=24.00 Aligned_cols=43 Identities=21% Similarity=0.340 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHhhhHHHH-HHhHHHhhchhhh
Q 034626 40 ACLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLA-VGSLRYRACSANK 86 (89)
Q Consensus 40 ~c~~~g~~~~~ls~~~~~~p~kFA~lyTlG~il~-l~s~~fL~Gp~~q 86 (89)
+.-.+|.++++++.++++.+. +++.|.+++ ++|..|+.+|.-+
T Consensus 10 ~~d~~~~~~FliGSilfl~~~----~~~~g~wlFiiGS~~f~i~~~i~ 53 (59)
T PF14145_consen 10 VNDFIGGLLFLIGSILFLPES----LYTAGTWLFIIGSILFLIRPIIR 53 (59)
T ss_pred HHHHHHHHHHHHHHHHHcCch----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566677777777666552 446666654 4566777777544
No 5
>PF11026 DUF2721: Protein of unknown function (DUF2721); InterPro: IPR021279 This family is conserved in bacteria. The function is not known.
Probab=73.08 E-value=4.1 Score=27.73 Aligned_cols=57 Identities=25% Similarity=0.252 Sum_probs=30.4
Q ss_pred CCCCCCCHHHHHHHHHH-HHHHHHHHHHHHHHH-hh-------ccchhHHHHhhhHHHHHHhHHHh
Q 034626 24 DGICSLSYTQRMYAFAA-CLLAGLVCMFLSIIV-FV-------RPIKFAILFTFGNLLAVGSLRYR 80 (89)
Q Consensus 24 ~~~~~LS~~qRi~gF~~-c~~~g~~~~~ls~~~-~~-------~p~kFA~lyTlG~il~l~s~~fL 80 (89)
.|...|.+.-|++..++ +...+.+++.++.+. ++ .+.--+++|..|-++.++|....
T Consensus 50 ~el~~L~rR~~li~~ai~~~~~s~ll~~l~i~~lf~~~~~~~~~~~~~~~lF~~am~~l~~sl~~f 115 (130)
T PF11026_consen 50 RELRILRRRARLIRRAITLATLSALLVCLVILLLFLSALLSIDLSWLVAILFVLAMLLLIASLVLF 115 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556666666665554 333444444444332 22 23345567777777666666543
No 6
>KOG1743 consensus Ferric reductase-like proteins [Inorganic ion transport and metabolism]
Probab=66.20 E-value=11 Score=26.57 Aligned_cols=42 Identities=21% Similarity=0.292 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHhhhHHHHHHhHHHhhchhhh
Q 034626 41 CLLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLRYRACSANK 86 (89)
Q Consensus 41 c~~~g~~~~~ls~~~~~~p~kFA~lyTlG~il~l~s~~fL~Gp~~q 86 (89)
....|+.+++++.++++.- .+-++||++++.+..+..|.++-
T Consensus 13 ~TgfG~ff~l~Gii~ffD~----aLLa~GNlLfi~GvsliiG~~~t 54 (137)
T KOG1743|consen 13 LTGFGVFFFLFGIILFFDK----ALLAMGNLLFIIGVSLIIGFRKT 54 (137)
T ss_pred EechhHHHHHHHHHHHHhh----HHHHhcchHHHHhHHHhhcchhh
Confidence 3456777888887776642 36689999999999999998754
No 7
>PF07787 DUF1625: Protein of unknown function (DUF1625); InterPro: IPR012430 Sequences making up this family are derived from hypothetical proteins expressed by both prokaryotic and eukaryotic species. The region in question is approximately 250 residues long.
Probab=59.68 E-value=39 Score=24.97 Aligned_cols=26 Identities=12% Similarity=0.309 Sum_probs=19.1
Q ss_pred hhhcccCCCCCCCHHHHHHHHHHHHH
Q 034626 18 FLEDESDGICSLSYTQRMYAFAACLL 43 (89)
Q Consensus 18 ~~~~~~~~~~~LS~~qRi~gF~~c~~ 43 (89)
-+..+..+-..++|.-|+.|+++-++
T Consensus 171 ~f~~~~~~n~~~tW~lR~~G~llmf~ 196 (248)
T PF07787_consen 171 MFAKEHSANNTLTWILRFIGWLLMFI 196 (248)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 35455555678999999999987544
No 8
>COG1288 Predicted membrane protein [Function unknown]
Probab=55.18 E-value=42 Score=28.16 Aligned_cols=69 Identities=19% Similarity=0.252 Sum_probs=37.3
Q ss_pred cccccCChhhhhhhhhcccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh--hccchhHHHHhhhHHHHHH
Q 034626 5 KQLVAGDEEREESFLEDESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVF--VRPIKFAILFTFGNLLAVG 75 (89)
Q Consensus 5 ~~l~~~~~~~e~~~~~~~~~~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~~--~~p~kFA~lyTlG~il~l~ 75 (89)
+..+.++++|.++..+.++++--..+++++++-+++++..-+ .+.+.... +.|.-=|.+..+|-+..+.
T Consensus 247 ~S~v~~~~~e~r~~f~~~~~~~~~Ft~~~klvL~lf~l~f~~--mI~GV~~~GW~f~eiA~~Fl~mgIiig~I 317 (481)
T COG1288 247 LSLVYEDDEEFRETFKVEDSGERPFTFRDKLVLLLFTLTFVI--MIWGVIVLGWWFPEIAAQFLAMGIIIGLI 317 (481)
T ss_pred ccccccchHHHHHHhhhccccccccchhhhHHHHHHHHHHHH--HHHHhhhhceehHHHHHHHHHHHHHHHHH
Confidence 334444433333233444444556889999888777665433 33333322 4566666666666665544
No 9
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=54.45 E-value=65 Score=21.74 Aligned_cols=42 Identities=17% Similarity=0.212 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcc-----chhHHHHhhhHHHHHHh
Q 034626 35 MYAFAACLLAGLVCMFLSIIVFVRP-----IKFAILFTFGNLLAVGS 76 (89)
Q Consensus 35 i~gF~~c~~~g~~~~~ls~~~~~~p-----~kFA~lyTlG~il~l~s 76 (89)
+..-++.+++|.++.+++.+++..+ ..=..+.-+|.+++|=+
T Consensus 44 I~la~~Lli~G~~li~~g~l~~~~~i~~~~~~~~~llilG~L~fIPG 90 (115)
T PF05915_consen 44 IALAVFLLIFGTVLIIIGLLLFFGHIDGDRDRGWALLILGILCFIPG 90 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCCCcccchHHHHHHHHHhcc
Confidence 3344456777888888888776543 23334556666666543
No 10
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=50.70 E-value=82 Score=21.86 Aligned_cols=25 Identities=20% Similarity=0.259 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034626 30 SYTQRMYAFAACLLAGLVCMFLSIIV 55 (89)
Q Consensus 30 S~~qRi~gF~~c~~~g~~~~~ls~~~ 55 (89)
|+.+|+ .-++++++|++..+.+...
T Consensus 1 s~~~~i-~~i~~iilgilli~~gI~~ 25 (191)
T PF04156_consen 1 SKKQRI-ISIILIILGILLIASGIAA 25 (191)
T ss_pred ChhHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444555 4567778888766655554
No 11
>PF14851 FAM176: FAM176 family
Probab=49.01 E-value=43 Score=23.90 Aligned_cols=37 Identities=16% Similarity=0.148 Sum_probs=25.6
Q ss_pred HHHHHHHHHhh--ccchhHHHHhhhHHHHHHhHHHhhch
Q 034626 47 VCMFLSIIVFV--RPIKFAILFTFGNLLAVGSLRYRACS 83 (89)
Q Consensus 47 ~~~~ls~~~~~--~p~kFA~lyTlG~il~l~s~~fL~Gp 83 (89)
+-..|+.+..+ +|-+||++|..|-.+-++=+.++..+
T Consensus 5 lSnsLaaya~I~~~PE~~aLYFv~gVC~GLlLtLcllV~ 43 (153)
T PF14851_consen 5 LSNSLAAYAHIRDNPERFALYFVSGVCAGLLLTLCLLVI 43 (153)
T ss_pred HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34455555444 78899999998877777666666544
No 12
>PF13038 DUF3899: Domain of unknown function (DUF3899)
Probab=48.96 E-value=20 Score=22.47 Aligned_cols=14 Identities=57% Similarity=0.840 Sum_probs=6.0
Q ss_pred HHHHHHHHHHHHHH
Q 034626 41 CLLAGLVCMFLSII 54 (89)
Q Consensus 41 c~~~g~~~~~ls~~ 54 (89)
++..|+++.+++.+
T Consensus 75 ~ll~~~ll~l~~ii 88 (92)
T PF13038_consen 75 LLLIGLLLILLSII 88 (92)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444444444443
No 13
>PF10003 DUF2244: Integral membrane protein (DUF2244); InterPro: IPR019253 This entry consists of various bacterial putative membrane proteins with no known function.
Probab=48.36 E-value=85 Score=21.35 Aligned_cols=19 Identities=21% Similarity=-0.094 Sum_probs=13.8
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 034626 26 ICSLSYTQRMYAFAACLLA 44 (89)
Q Consensus 26 ~~~LS~~qRi~gF~~c~~~ 44 (89)
.+|||++|-.+.+++..++
T Consensus 4 nrSLs~~g~~~~~~~~~~~ 22 (140)
T PF10003_consen 4 NRSLSPRGFLIFIAILAAV 22 (140)
T ss_pred CCCCCHHHHHHHHHHHHHH
Confidence 4699999988776654444
No 14
>COG5120 GOT1 Membrane protein involved in Golgi transport [Intracellular trafficking and secretion]
Probab=47.76 E-value=37 Score=23.62 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHhhhHHHHHHhHHHhhchhh
Q 034626 42 LLAGLVCMFLSIIVFVRPIKFAILFTFGNLLAVGSLRYRACSAN 85 (89)
Q Consensus 42 ~~~g~~~~~ls~~~~~~p~kFA~lyTlG~il~l~s~~fL~Gp~~ 85 (89)
..+|..+++++.+++..- .+-++||++.+.+...+.|..|
T Consensus 14 t~~Gflffl~Gif~ffDr----aLl~lGNlL~iiG~fliags~k 53 (129)
T COG5120 14 TSIGFLFFLVGIFLFFDR----ALLILGNLLMIIGIFLIAGSRK 53 (129)
T ss_pred eehhHHHHHHHHHHHhhh----HHHHhcCHHHHHHHHHHhcccc
Confidence 345666777776665532 2567899999999888888765
No 15
>PF03381 CDC50: LEM3 (ligand-effect modulator 3) family / CDC50 family; InterPro: IPR005045 Members of this family have no known function. They have predicted transmembrane helices.; GO: 0016020 membrane
Probab=47.01 E-value=22 Score=27.06 Aligned_cols=31 Identities=29% Similarity=0.610 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh----hccchhH
Q 034626 32 TQRMYAFAACLLAGLVCMFLSIIVF----VRPIKFA 63 (89)
Q Consensus 32 ~qRi~gF~~c~~~g~~~~~ls~~~~----~~p~kFA 63 (89)
+...+| ++++++|.+|++++++++ .+|||.+
T Consensus 241 kn~~Lg-i~ylvvg~i~~v~~i~~~~~~~~~~r~~g 275 (278)
T PF03381_consen 241 KNYFLG-IAYLVVGGICLVLAIIFLIIHYFKPRKLG 275 (278)
T ss_pred cccHHH-HHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence 344444 456777888888887754 3788754
No 16
>PF13150 DUF3989: Protein of unknown function (DUF3989)
Probab=44.05 E-value=53 Score=21.11 Aligned_cols=19 Identities=26% Similarity=0.197 Sum_probs=14.2
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 034626 26 ICSLSYTQRMYAFAACLLA 44 (89)
Q Consensus 26 ~~~LS~~qRi~gF~~c~~~ 44 (89)
|-.||.+||+..-+..+++
T Consensus 19 c~~Lsp~~R~~vvl~ml~~ 37 (85)
T PF13150_consen 19 CGRLSPKQRLRVVLVMLVL 37 (85)
T ss_pred HhcCCHHHHHHHHHHHHHH
Confidence 5599999999766655544
No 17
>PF13131 DUF3951: Protein of unknown function (DUF3951)
Probab=42.06 E-value=30 Score=20.77 Aligned_cols=22 Identities=23% Similarity=0.170 Sum_probs=16.5
Q ss_pred HHHhhhHHHHHHhHHHhhchhh
Q 034626 64 ILFTFGNLLAVGSLRYRACSAN 85 (89)
Q Consensus 64 ~lyTlG~il~l~s~~fL~Gp~~ 85 (89)
++.|+|-++..+-..||.|..+
T Consensus 2 iL~tiG~~~~~~~I~~lIgfit 23 (53)
T PF13131_consen 2 ILLTIGIILFTIFIFFLIGFIT 23 (53)
T ss_pred chHHHHHHHHHHHHHHHHHHHH
Confidence 4677888877777888888754
No 18
>KOG3025 consensus Mitochondrial F1F0-ATP synthase, subunit c/ATP9/proteolipid [Energy production and conversion]
Probab=37.82 E-value=56 Score=22.87 Aligned_cols=24 Identities=21% Similarity=0.618 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 034626 34 RMYAFAACLLAGLVCMFLSIIVFV 57 (89)
Q Consensus 34 Ri~gF~~c~~~g~~~~~ls~~~~~ 57 (89)
-|+||++.=+.|++|.++++++++
T Consensus 112 ailgfalsea~glfclm~aflilf 135 (137)
T KOG3025|consen 112 AILGFALSEAMGLFCLMVAFLILF 135 (137)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHh
Confidence 578999999999999999987653
No 19
>PRK12585 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=34.13 E-value=96 Score=23.17 Aligned_cols=16 Identities=25% Similarity=0.330 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHH
Q 034626 39 AACLLAGLVCMFLSII 54 (89)
Q Consensus 39 ~~c~~~g~~~~~ls~~ 54 (89)
.+++++|.+++++|.+
T Consensus 10 ~vLLliG~~f~ligaI 25 (197)
T PRK12585 10 SIMILIGGLLSILAAI 25 (197)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3466777777777765
No 20
>PF08566 Pam17: Mitochondrial import protein Pam17; InterPro: IPR013875 The presequence translocase-associated motor (PAM) drives the completion of preprotein translocation into the mitochondrial matrix. The Pam17 subunit is required for formation of a stable complex between cochaperones Pam16 and Pam18 and promotes the association of Pam16-Pam18 with the presequence translocase []. Mitochondria lacking Pam17 are selectively impaired in the import of matrix proteins [].
Probab=33.61 E-value=68 Score=23.45 Aligned_cols=59 Identities=15% Similarity=0.236 Sum_probs=36.0
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----ccc----hhH--HHHhhhHHHHHHhHHHhhchh
Q 034626 25 GICSLSYTQRMYAFAACLLAGLVCMFLSIIVFV----RPI----KFA--ILFTFGNLLAVGSLRYRACSA 84 (89)
Q Consensus 25 ~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~~~----~p~----kFA--~lyTlG~il~l~s~~fL~Gp~ 84 (89)
++++|=.++|.+.-+.....|++-..++...+. .|. .+= +.+. +..+.-+..++|.||.
T Consensus 29 ~ffkLRk~rrr~~~~~si~t~~~g~~~g~~yl~~~~~D~~~~I~GlDP~~~~g-~~t~a~g~lG~L~GP~ 97 (173)
T PF08566_consen 29 EFFKLRKSRRRINLVSSIPTGLLGSSAGWAYLSTIEIDPTQQIMGLDPFMVYG-LATLACGALGWLVGPS 97 (173)
T ss_pred HHHHHHHHhhHHHHHhHHHHHHHHHHHHHHHHhhccccccccccCcCHHHHHH-HHHHHHHHHHHHhcch
Confidence 355666778888877777777776666655431 222 111 2223 3345567789999995
No 21
>PF11131 PhrC_PhrF: Rap-phr extracellular signalling
Probab=31.82 E-value=52 Score=18.34 Aligned_cols=16 Identities=31% Similarity=0.339 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHH
Q 034626 36 YAFAACLLAGLVCMFL 51 (89)
Q Consensus 36 ~gF~~c~~~g~~~~~l 51 (89)
+.|++|++.+.+|..-
T Consensus 4 Kl~l~CLA~aavF~~a 19 (37)
T PF11131_consen 4 KLFLICLAAAAVFTAA 19 (37)
T ss_pred hHHHHHHHHHHHHHhh
Confidence 5789999998877543
No 22
>KOG1397 consensus Ca2+/H+ antiporter VCX1 and related proteins [Inorganic ion transport and metabolism]
Probab=30.86 E-value=78 Score=26.31 Aligned_cols=21 Identities=14% Similarity=0.015 Sum_probs=15.0
Q ss_pred cCCCCCCCHHHHHHHHHHHHH
Q 034626 23 SDGICSLSYTQRMYAFAACLL 43 (89)
Q Consensus 23 ~~~~~~LS~~qRi~gF~~c~~ 43 (89)
+++.+++|++.-+.+-+...+
T Consensus 280 ~~e~p~is~~ss~~~L~~~T~ 300 (441)
T KOG1397|consen 280 EDEAPNISRWSSIIWLLIMTL 300 (441)
T ss_pred cCCCCcchHHHHHHHHHHHHH
Confidence 567899999887776655433
No 23
>PF14181 YqfQ: YqfQ-like protein
Probab=29.89 E-value=16 Score=26.29 Aligned_cols=13 Identities=46% Similarity=1.050 Sum_probs=9.5
Q ss_pred Cccc-cccccCChh
Q 034626 1 MWKL-KQLVAGDEE 13 (89)
Q Consensus 1 m~~l-~~l~~~~~~ 13 (89)
|+|+ |.+...+++
T Consensus 88 m~kiyr~l~s~~~~ 101 (161)
T PF14181_consen 88 MWKIYRGLKSSDDE 101 (161)
T ss_pred HHHHHHccCCCCcc
Confidence 6787 888877653
No 24
>PRK12675 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=29.71 E-value=1.7e+02 Score=19.40 Aligned_cols=44 Identities=20% Similarity=0.115 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHHhh-------ccchhHHHHhhhHHHHHHhHHHhhc
Q 034626 39 AACLLAGLVCMFLSIIVFV-------RPIKFAILFTFGNLLAVGSLRYRAC 82 (89)
Q Consensus 39 ~~c~~~g~~~~~ls~~~~~-------~p~kFA~lyTlG~il~l~s~~fL~G 82 (89)
.+++++|.++.+++.+=++ |-..=+..-|+|.++.+.+.....+
T Consensus 4 ~~lll~G~~f~l~g~iGllR~PD~ytRlHAatk~~TlG~~lil~g~~l~~~ 54 (104)
T PRK12675 4 LLFLLFGYSIMFFGALGLLRFPDVYTRLHAATKCDTGGAMGIILALALASD 54 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHhhhchhhhhhhHHHHHHHHHHHhc
Confidence 3566777777777765222 2224456667777777777665544
No 25
>COG2252 Xanthine/uracil/vitamin C permease [Nucleotide transport and metabolism]
Probab=29.32 E-value=2.2e+02 Score=23.65 Aligned_cols=47 Identities=30% Similarity=0.477 Sum_probs=34.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHh----h--ccc--hhHHHHhhhHHHHHHhH
Q 034626 28 SLSYTQRMYAFAACLLAGLVCMFLSIIVF----V--RPI--KFAILFTFGNLLAVGSL 77 (89)
Q Consensus 28 ~LS~~qRi~gF~~c~~~g~~~~~ls~~~~----~--~p~--kFA~lyTlG~il~l~s~ 77 (89)
.+||++++ .+++..|+++.++++.=+ . -|+ |.|+.=.+|-.+.+.+.
T Consensus 98 gi~wq~AL---~aVF~sGiif~ils~t~iR~~ii~~IP~~lk~ai~aGIGlFia~IgL 152 (436)
T COG2252 98 GLSWQVAL---GAVFLSGIIFLLLSLTGIREWIINAIPRSLKLAIGAGIGLFIALIGL 152 (436)
T ss_pred CCcHHHHH---HHHHHHHHHHHHHHHHhHHHHHHHhCcHHHHHHHHHHHHHHHHHHHH
Confidence 48998865 788999999999987622 2 244 99999999965555443
No 26
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=28.77 E-value=1.6e+02 Score=20.81 Aligned_cols=43 Identities=21% Similarity=0.087 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHhh-ccc------hhHHHHhhhHHHHHHhHHHhh
Q 034626 39 AACLLAGLVCMFLSIIVFV-RPI------KFAILFTFGNLLAVGSLRYRA 81 (89)
Q Consensus 39 ~~c~~~g~~~~~ls~~~~~-~p~------kFA~lyTlG~il~l~s~~fL~ 81 (89)
.+++++|.++++++.+=++ .|. .=+..-|+|..+.+++.....
T Consensus 13 ~ill~lG~~f~ligaIGllRfPD~ytRlHAatKa~TlG~~liLlg~~l~~ 62 (145)
T PRK12586 13 AIMILLGSIIALISAIGIVKFQDVFLRSHAATKSSTLSVLLTLIGVLIYF 62 (145)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCcHHHHccccccchhhHHHHHHHHHHHHH
Confidence 4566677777777765322 232 334556777777777765543
No 27
>PRK06007 fliF flagellar MS-ring protein; Reviewed
Probab=28.57 E-value=60 Score=27.11 Aligned_cols=40 Identities=13% Similarity=0.358 Sum_probs=22.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHh
Q 034626 26 ICSLSYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFAILFT 67 (89)
Q Consensus 26 ~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~~~~p~kFA~lyT 67 (89)
+.+|+..||+...++..+ ++..+....++.....|.+||+
T Consensus 16 ~~~l~~~qk~~l~~~~~~--~v~~~~~l~~~~~~p~y~~Ly~ 55 (542)
T PRK06007 16 LQKLSKKRKIALIGAGAA--VVAAIVALVLWASRPDYRVLYS 55 (542)
T ss_pred HHhcChhhHHHHHHHHHH--HHHHHHHHHHhhCCCCeeehhc
Confidence 679999999866432222 2222222222334456888887
No 28
>TIGR00054 RIP metalloprotease RseP. A model that detects fragments as well matches a number of members of the PEPTIDASE FAMILY S2C. The region of match appears not to overlap the active site domain.
Probab=27.66 E-value=89 Score=24.94 Aligned_cols=17 Identities=18% Similarity=-0.007 Sum_probs=13.1
Q ss_pred cCCCCCCCHHHHHHHHH
Q 034626 23 SDGICSLSYTQRMYAFA 39 (89)
Q Consensus 23 ~~~~~~LS~~qRi~gF~ 39 (89)
..+..+-+.+||+.-.+
T Consensus 85 ~~~f~~~~~~~r~~i~~ 101 (420)
T TIGR00054 85 GDLFNNKSVFQKAIIIF 101 (420)
T ss_pred hhhhccCCHHHHHHhhh
Confidence 34577999999997655
No 29
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=27.15 E-value=2.1e+02 Score=20.99 Aligned_cols=45 Identities=13% Similarity=0.329 Sum_probs=27.7
Q ss_pred cccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh------hccchhHHHHh
Q 034626 21 DESDGICSLSYTQRMYAFAACLLAGLVCMFLSIIVF------VRPIKFAILFT 67 (89)
Q Consensus 21 ~~~~~~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~~------~~p~kFA~lyT 67 (89)
+++.+-..+|...+.+ .+-+..|++.+.+..+.- ..|+-.+-.|.
T Consensus 9 eq~~~~~~~s~~~~~~--~iGf~gGliWs~v~yl~y~f~FT~v~P~~ll~Pf~ 59 (173)
T PF11085_consen 9 EQNQREKPMSFLAKVL--EIGFFGGLIWSLVRYLAYFFHFTEVGPNFLLEPFA 59 (173)
T ss_pred hhcccCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccccChhhhhhh
Confidence 4444556778877776 444567888888876632 35665555444
No 30
>PLN02797 phosphatidyl-N-dimethylethanolamine N-methyltransferase
Probab=26.53 E-value=1e+02 Score=22.39 Aligned_cols=29 Identities=21% Similarity=0.640 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhccchhHHHHhhhHHHHH
Q 034626 45 GLVCMFLSIIVFVRPIKFAILFTFGNLLAV 74 (89)
Q Consensus 45 g~~~~~ls~~~~~~p~kFA~lyTlG~il~l 74 (89)
|...++++..+.. |.+++++|++|-+..+
T Consensus 120 GStl~fLg~al~~-p~~~~~lW~lgYvfmm 148 (164)
T PLN02797 120 GSILSLLACLSWV-PFQYILLWCLGYVFMM 148 (164)
T ss_pred hHHHHHHHHHHHh-hHHHHHHHHHHHHHHh
Confidence 4445555555545 9999999999988654
No 31
>TIGR00206 fliF flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF). Component of the M (cytoplasmic associated) ring, one of four rings (L,P,S,M) which make up the flagellar hook-basal body which is a major portion of the flagellar organelle. Although the basic structure of the flagella appears to be similar for all bacteria, additional rings and structures surrounding the basal body have been observed for some bacteria (eg Vibrio cholerae and Treponema pallidum).
Probab=26.36 E-value=78 Score=26.62 Aligned_cols=40 Identities=23% Similarity=0.419 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh-hccchhHHHHh
Q 034626 26 ICSLSYTQRMYAFAACLLAGLVCMFLSIIVF-VRPIKFAILFT 67 (89)
Q Consensus 26 ~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~~-~~p~kFA~lyT 67 (89)
+-+|+..||+...++. ++++..+...+++ -+|..|++||+
T Consensus 16 ~~~l~~~qk~~l~~~~--~~vv~~~~~~~~~~~~p~~y~~Lys 56 (555)
T TIGR00206 16 FKKLSKVQKIALILAG--FAIIAALVFLILFATKSQSYALLFV 56 (555)
T ss_pred HHhcChhhHHHHHHHH--HHHHHHHHHHHHHhcCCCCeeeccc
Confidence 5689999998643222 2222222222222 25657999997
No 32
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=26.25 E-value=46 Score=22.23 Aligned_cols=16 Identities=31% Similarity=0.401 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHHHH
Q 034626 34 RMYAFAACLLAGLVCM 49 (89)
Q Consensus 34 Ri~gF~~c~~~g~~~~ 49 (89)
|++.|++++++.++++
T Consensus 1 RW~l~~iii~~i~l~~ 16 (130)
T PF12273_consen 1 RWVLFAIIIVAILLFL 16 (130)
T ss_pred CeeeHHHHHHHHHHHH
Confidence 3444544444433333
No 33
>KOG2592 consensus Tumor differentially expressed (TDE) protein [Function unknown]
Probab=25.99 E-value=55 Score=27.07 Aligned_cols=36 Identities=19% Similarity=0.236 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHhh-----ccc----------hhHHHHhhhHHHHHH
Q 034626 40 ACLLAGLVCMFLSIIVFV-----RPI----------KFAILFTFGNLLAVG 75 (89)
Q Consensus 40 ~c~~~g~~~~~ls~~~~~-----~p~----------kFA~lyTlG~il~l~ 75 (89)
+|++.+.++++++.+++. .|| ||.+.+.+.-..+..
T Consensus 81 ~~f~~a~Ff~~lsllm~gVkss~D~R~~iqng~W~fK~i~~~~l~i~~FfI 131 (426)
T KOG2592|consen 81 LCFGLACFFLLLSLLMIGVKSSKDPRAAIQNGFWFFKFILWFGLIVGSFFI 131 (426)
T ss_pred HHHHHHHHHHHHHHHHHhcCcCCCHHHHHHcCcHHHHHHHHHHHHHheEEc
Confidence 599999999999988763 233 888888765444333
No 34
>TIGR01666 YCCS hypothetical membrane protein, TIGR01666. This model represents a clade of sequences from gamma and beta proteobacteria. These proteins are 700 amino acids long and many have been annotated as putative membrane proteins. The gene from Salmonella has been annotated as a putative efflux transporter. The gene from E. coli has the name yccS.
Probab=25.97 E-value=2.8e+02 Score=24.11 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=19.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhH
Q 034626 30 SYTQRMYAFAACLLAGLVCMFLSIIVFVRPIKFA 63 (89)
Q Consensus 30 S~~qRi~gF~~c~~~g~~~~~ls~~~~~~p~kFA 63 (89)
+++.|+...+++.+++.+.++..-+++-.|.-|+
T Consensus 52 ~~~~R~~~l~~t~~~f~i~sl~v~ll~~~p~lf~ 85 (704)
T TIGR01666 52 RLTGRLKNVIFTLICFSIASFSVELLFGKPWLFA 85 (704)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 5678888888776665544444333333444333
No 35
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=24.30 E-value=1.2e+02 Score=22.50 Aligned_cols=54 Identities=9% Similarity=0.120 Sum_probs=37.0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH--HHhhc-------------------cchhHHHHhhhHHHHHHhHHHhh
Q 034626 28 SLSYTQRMYAFAACLLAGLVCMFLSI--IVFVR-------------------PIKFAILFTFGNLLAVGSLRYRA 81 (89)
Q Consensus 28 ~LS~~qRi~gF~~c~~~g~~~~~ls~--~~~~~-------------------p~kFA~lyTlG~il~l~s~~fL~ 81 (89)
..|..++++-...||.+|+++.-... .++|+ -..-.+.|.+..++.++-.++++
T Consensus 4 ~~~~~t~lIi~stsF~LG~lf~~~~yD~~~Lw~~~~t~~~~d~a~~hY~~l~~sP~~v~~~Lh~v~~lglig~~i 78 (196)
T PF08229_consen 4 SCSFGTGLIICSTSFLLGVLFSNWPYDYPTLWSSPPTDEAFDNAETHYQTLHNSPPIVKYILHIVIGLGLIGLLI 78 (196)
T ss_pred ccceeeeeehHhhHHHHHHHHHcccchhHHhcCCCCCHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 35667788888889999987765431 13332 22557888888888887777754
No 36
>KOG3393 consensus Predicted membrane protein [Function unknown]
Probab=24.27 E-value=2.8e+02 Score=20.03 Aligned_cols=55 Identities=18% Similarity=0.027 Sum_probs=33.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHH-Hhh----c--cc--hhHHHHhhhHHHHHHhHHHhh
Q 034626 26 ICSLSYTQRMYAFAACLLAGLVCMFLSII-VFV----R--PI--KFAILFTFGNLLAVGSLRYRA 81 (89)
Q Consensus 26 ~~~LS~~qRi~gF~~c~~~g~~~~~ls~~-~~~----~--p~--kFA~lyTlG~il~l~s~~fL~ 81 (89)
-+++.++-|+.-|+.+..+.. -.+-|+. ++. + -. -+++.--++|++.+.|...++
T Consensus 84 g~sga~~AR~wLfiGF~l~fg-sLias~wVli~~yv~~~~~~~v~~GvA~~~~N~~i~~s~~v~k 147 (157)
T KOG3393|consen 84 GCSGARGARIWLFIGFALLFG-SLIASIWVLIGKYVVKEYDGKVWPGVANFLQNVLIFFSSLVYK 147 (157)
T ss_pred cccccchhhhHHHHHHHHHHh-hhhhhHHHHhHHHHhcCCCCcccccHHHHHHHHHHHHHHHHHh
Confidence 479999999988876554322 1112222 221 1 11 366777789999998887664
No 37
>PF15462 Barttin: Bartter syndrome, infantile, with sensorineural deafness (Barttin)
Probab=24.24 E-value=8.3 Score=29.02 Aligned_cols=22 Identities=18% Similarity=0.693 Sum_probs=18.8
Q ss_pred ccchhHHHHhhhHHHHHHhHHH
Q 034626 58 RPIKFAILFTFGNLLAVGSLRY 79 (89)
Q Consensus 58 ~p~kFA~lyTlG~il~l~s~~f 79 (89)
+|.-|+.+|++|+|+.++++..
T Consensus 4 rPqvy~Tf~amG~vmv~~GviW 25 (224)
T PF15462_consen 4 RPQVYGTFYAMGVVMVIGGVIW 25 (224)
T ss_pred CCeeEEEeeeccceeeehhhhh
Confidence 5778999999999999988754
No 38
>PF00858 ASC: Amiloride-sensitive sodium channel; InterPro: IPR001873 The apical membrane of many tight epithelia contains sodium channels that are primarily characterised by their high affinity to the diuretic blocker amiloride [, , , ]. These channels mediate the first step of active sodium reabsorption essential for the maintenance of body salt and water homeostasis []. In vertebrates, the channels control reabsorption of sodium in kidney, colon, lung and sweat glands; they also play a role in taste perception. Members of the epithelial Na+ channel (ENaC) family fall into four subfamilies, termed alpha, beta, gamma and delta []. The proteins exhibit the same apparent topology, each with two transmembrane (TM) spanning segments, separated by a large extracellular loop. In most ENaC proteins studied to date, the extracellular domains are highly conserved and contain numerous cysteine residues, with flanking C-terminal amphipathic TM regions, postulated to contribute to the formation of the hydrophilic pores of the oligomeric channel protein complexes. It is thought that the well-conserved extracellular domains serve as receptors to control the activities of the channels. Vertebrate ENaC proteins are similar to degenerins of Caenorhabditis elegans []: deg-1, del-1, mec-4, mec-10 and unc-8. These proteins can be mutated to cause neuronal degradation, and are also thought to form sodium channels. Structurally, the proteins that belong to this family consist of about 510 to 920 amino acid residues. They are made of an intracellular N terminus region followed by a transmembrane domain, a large extracellular loop, a second transmembrane segment and a C-terminal intracellular tail [].; GO: 0005272 sodium channel activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 2QTS_B 3S3W_C 3IJ4_A 3S3X_A 3HGC_A 2K2B_A.
Probab=23.85 E-value=1.1e+02 Score=23.11 Aligned_cols=30 Identities=7% Similarity=0.301 Sum_probs=19.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 034626 27 CSLSYTQRMYAFAACLLAGLVCMFLSIIVF 56 (89)
Q Consensus 27 ~~LS~~qRi~gF~~c~~~g~~~~~ls~~~~ 56 (89)
.+.++.+|++|++++++..+++......++
T Consensus 16 ~~~~~~~R~~W~~~~~~~~~~~~~~~~~~~ 45 (439)
T PF00858_consen 16 SKTSWFERLFWLLVVVVSFILFIYQIYLLI 45 (439)
T ss_dssp -----HCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356788999999988887777766665543
No 39
>PF04178 Got1: Got1/Sft2-like family ; InterPro: IPR007305 Traffic through the yeast Golgi complex depends on a member of the syntaxin family of SNARE proteins, Sed5, present in early Golgi cisternae. Got1 is thought to facilitate Sed5-dependent fusion events []. This is a family of sequences derived from eukaryotic proteins. They are similar to a region of a SNARE-like protein required for traffic through the Golgi complex, SFT2 protein (P38166 from SWISSPROT) []. This is a conserved protein with four putative transmembrane helices, thought to be involved in vesicular transport in later Golgi compartments []. ; GO: 0016192 vesicle-mediated transport
Probab=23.46 E-value=2.3e+02 Score=18.74 Aligned_cols=41 Identities=17% Similarity=0.247 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh----------ccc--hhHHHHhhhHHHHHH
Q 034626 35 MYAFAACLLAGLVCMFLSIIVFV----------RPI--KFAILFTFGNLLAVG 75 (89)
Q Consensus 35 i~gF~~c~~~g~~~~~ls~~~~~----------~p~--kFA~lyTlG~il~l~ 75 (89)
-.-|+.++.+|-++++.|+.++. +|. +.++.|-.|-++.+.
T Consensus 23 ~~kFa~l~tlGnil~l~s~~fL~Gp~~q~k~m~~~~R~~~t~~y~~~l~~tl~ 75 (118)
T PF04178_consen 23 PRKFAILYTLGNILFLASTFFLIGPKKQFKFMFSPKRLIATIIYFISLILTLY 75 (118)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHH
Confidence 34688888889888888877653 333 566777666665555
No 40
>PRK12672 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=22.55 E-value=2.5e+02 Score=18.89 Aligned_cols=44 Identities=25% Similarity=0.220 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHHHH-Hh------hccchhHHHHhhhHHHHHHhHHHhhc
Q 034626 39 AACLLAGLVCMFLSII-VF------VRPIKFAILFTFGNLLAVGSLRYRAC 82 (89)
Q Consensus 39 ~~c~~~g~~~~~ls~~-~~------~~p~kFA~lyTlG~il~l~s~~fL~G 82 (89)
.+++++|.++.+.+.+ ++ -|-..=+..-|+|..+.+.+.....+
T Consensus 8 ~ill~~G~~f~l~gaiGllR~PD~ytRlHAatk~~TlG~~lil~g~~l~~~ 58 (118)
T PRK12672 8 YIFLAIGVTFNLLGSIALHRFPDVYTRLHGATKCTTFGTIFAVLAVVTHAL 58 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHhCccHHHHhhhchhhhHhHHHHHHHHHHHHHh
Confidence 4566667777777665 32 12224456678888888887776544
No 41
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=21.85 E-value=1.9e+02 Score=17.79 Aligned_cols=26 Identities=23% Similarity=0.166 Sum_probs=17.5
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH
Q 034626 26 ICSLSYTQRMYAFAACLLAGLVCMFL 51 (89)
Q Consensus 26 ~~~LS~~qRi~gF~~c~~~g~~~~~l 51 (89)
..+=-...|++||++=+++++++..+
T Consensus 33 L~SGv~~~~~~GfaiG~~~AlvLv~i 58 (64)
T PF09472_consen 33 LESGVMATGIKGFAIGFLFALVLVGI 58 (64)
T ss_pred hHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33334567889998877777766554
No 42
>PF05255 UPF0220: Uncharacterised protein family (UPF0220); InterPro: IPR007919 This family of proteins is functionally uncharacterised.
Probab=21.55 E-value=3.1e+02 Score=19.55 Aligned_cols=55 Identities=18% Similarity=0.143 Sum_probs=33.2
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhh----cc-----c-hhHHHHhhhHHHHHHhHHHhh
Q 034626 26 ICSLSYTQRMYAFAACLLAGLVCMFLSIIVFV----RP-----I-KFAILFTFGNLLAVGSLRYRA 81 (89)
Q Consensus 26 ~~~LS~~qRi~gF~~c~~~g~~~~~ls~~~~~----~p-----~-kFA~lyTlG~il~l~s~~fL~ 81 (89)
-+.-.|+.|+.-|+..... +-..+-|...++ .| + -.++--.+.|++.+.|+..++
T Consensus 92 ~~~~~~~aR~~LFigf~l~-fggl~~s~~vli~~yv~~~~~~~~~~~Gva~vlqN~lI~~Sslvl~ 156 (166)
T PF05255_consen 92 GCGGAWRARLWLFIGFALS-FGGLAGSVWVLILKYVVPQYTKPTLWPGVANVLQNALIFLSSLVLW 156 (166)
T ss_pred CCchhHHHHHHHHHHHHHH-HHHHHHHHHHhhcccccCCCCCCCcccccHHHHHHHHHHHHHHHHH
Confidence 4688899999777654332 223333333221 22 2 345666778999999988775
No 43
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=21.17 E-value=1.8e+02 Score=17.25 Aligned_cols=19 Identities=21% Similarity=0.600 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 034626 36 YAFAACLLAGLVCMFLSII 54 (89)
Q Consensus 36 ~gF~~c~~~g~~~~~ls~~ 54 (89)
.||++|+.+..+-.++.++
T Consensus 13 F~~lIC~Fl~~~~~F~~F~ 31 (54)
T PF06716_consen 13 FGFLICLFLFCLVVFIWFV 31 (54)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3566677666555555544
No 44
>COG4605 CeuC ABC-type enterochelin transport system, permease component [Inorganic ion transport and metabolism]
Probab=20.67 E-value=3.1e+02 Score=21.93 Aligned_cols=43 Identities=21% Similarity=0.328 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHHHHHHH--hhccchhHHH---------------HhhhHHHHHHhHHHhh
Q 034626 39 AACLLAGLVCMFLSIIV--FVRPIKFAIL---------------FTFGNLLAVGSLRYRA 81 (89)
Q Consensus 39 ~~c~~~g~~~~~ls~~~--~~~p~kFA~l---------------yTlG~il~l~s~~fL~ 81 (89)
.++.++|.++..+|.++ ++.|+-|+++ .+++.++.++++.+..
T Consensus 135 LiGlv~G~lFrSiSsfmq~liDPneF~~lQ~~mFAsFn~int~ll~i~a~i~~~~~v~~~ 194 (316)
T COG4605 135 LIGLVLGTLFRSISSFMQRLIDPNEFAILQARMFASFNNINTELLAIAAIILLVVTVYLF 194 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHhhhhccCccHHHHHHHHHHHHHHHHH
Confidence 46888899999999874 5788877764 3567777777666554
No 45
>TIGR01300 CPA3_mnhG_phaG monovalent cation/proton antiporter, MnhG/PhaG subunit. This model represents a subfamily of small, transmembrane proteins believed to be components of Na+/H+ and K+/H+ antiporters. Members, including proteins designated MnhG from Staphylococcus aureus and PhaG from Rhizobium meliloti, show some similarity to chain L of the NADH dehydrogenase I, which also translocates protons.
Probab=20.66 E-value=2.5e+02 Score=18.19 Aligned_cols=42 Identities=26% Similarity=0.208 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHhh-------ccchhHHHHhhhHHHHHHhHHHhhc
Q 034626 41 CLLAGLVCMFLSIIVFV-------RPIKFAILFTFGNLLAVGSLRYRAC 82 (89)
Q Consensus 41 c~~~g~~~~~ls~~~~~-------~p~kFA~lyTlG~il~l~s~~fL~G 82 (89)
++++|.++.+++.+=++ |-..=+..-|+|..+.+.+.....+
T Consensus 2 ll~~G~~f~l~g~iGllR~pD~y~RlHAatk~~tlG~~lil~g~~l~~~ 50 (97)
T TIGR01300 2 LLLIGAFFTLLGAIGLVRFPDVYTRLHAATKGTTLGTILILLGVALIAL 50 (97)
T ss_pred hHHHHHHHHHHHHHHHHhCCcHHHHhhhhhhhHHHHHHHHHHHHHHHHh
Confidence 45677777777766222 2224456677777777777665544
No 46
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=20.27 E-value=1.6e+02 Score=20.17 Aligned_cols=27 Identities=19% Similarity=0.273 Sum_probs=17.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 034626 28 SLSYTQRMYAFAACLLAGLVCMFLSIIV 55 (89)
Q Consensus 28 ~LS~~qRi~gF~~c~~~g~~~~~ls~~~ 55 (89)
.+|-. -|.|-++|.++|++..++-+.+
T Consensus 60 ~fs~~-~i~~Ii~gv~aGvIg~Illi~y 86 (122)
T PF01102_consen 60 RFSEP-AIIGIIFGVMAGVIGIILLISY 86 (122)
T ss_dssp SSS-T-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred Ccccc-ceeehhHHHHHHHHHHHHHHHH
Confidence 44432 4788888888888777664433
No 47
>PF07803 GSG-1: GSG1-like protein; InterPro: IPR012478 This family contains sequences bearing similarity to a region of GSG1 (Q9Z1H7 from SWISSPROT), a protein specifically expressed in testicular germ cells []. It is possible that over expression of the human homologue may be involved in tumourigenesis of human testicular germ cell tumours []. The region in question has four highly conserved cysteine residues.
Probab=20.19 E-value=2.1e+02 Score=19.77 Aligned_cols=27 Identities=19% Similarity=0.097 Sum_probs=18.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 034626 28 SLSYTQRMYAFAACLLAGLVCMFLSII 54 (89)
Q Consensus 28 ~LS~~qRi~gF~~c~~~g~~~~~ls~~ 54 (89)
++++.||-..-++.-.+++.+++.|+.
T Consensus 1 ~~sr~~Ra~Ls~~ln~LAL~~S~tA~~ 27 (118)
T PF07803_consen 1 KMSRRQRALLSLILNLLALAFSTTALL 27 (118)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHh
Confidence 468899976666666666666666554
Done!