Query 034626
Match_columns 89
No_of_seqs 103 out of 314
Neff 5.3
Searched_HMMs 29240
Date Mon Mar 25 07:29:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034626.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034626hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4s_A ATP synthase subunit 9, 29.2 94 0.0032 18.9 4.2 26 32-57 49-74 (76)
2 2k21_A Potassium voltage-gated 13.1 1.6E+02 0.0055 19.8 2.9 21 31-51 55-75 (138)
3 3nw0_B Melanoma-associated ant 11.1 53 0.0018 23.3 0.0 12 77-88 169-180 (217)
4 1loi_A Cyclic 3',5'-AMP specif 10.9 94 0.0032 15.0 0.9 13 76-88 12-24 (26)
5 2qts_A Acid-sensing ION channe 9.7 1.4E+02 0.0048 22.1 1.9 26 28-53 13-38 (438)
6 1bl1_A Parathyroid hormone rec 8.8 1.1E+02 0.0039 15.6 0.8 10 61-70 19-28 (31)
7 3rf3_C Invasin IPAA, 70 kDa an 8.4 93 0.0032 15.4 0.3 13 64-76 16-28 (29)
8 3arc_T Photosystem II reaction 7.4 3E+02 0.01 14.0 2.8 13 37-49 7-19 (32)
9 2kjf_A Carnocyclin-A; circular 7.3 1.4E+02 0.0049 17.0 0.9 11 66-76 22-32 (60)
10 2jp3_A FXYD domain-containing 6.9 3.7E+02 0.013 15.9 2.6 13 45-57 25-37 (67)
No 1
>4f4s_A ATP synthase subunit 9, mitochondrial; C10 ring, F1FO ATP synthase, oligomycin, membr protein-antibiotic complex; HET: FME EFO; 1.90A {Saccharomyces cerevisiae} PDB: 2wpd_J* 2xok_K* 3u2y_K* 3u32_K* 3ud0_K* 3zry_J* 3u2f_K*
Probab=29.20 E-value=94 Score=18.86 Aligned_cols=26 Identities=23% Similarity=0.573 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q 034626 32 TQRMYAFAACLLAGLVCMFLSIIVFV 57 (89)
Q Consensus 32 ~qRi~gF~~c~~~g~~~~~ls~~~~~ 57 (89)
+.-++||+++=..|+.|.++++++++
T Consensus 49 ~~~ilG~Al~Ea~glf~LvvA~lllF 74 (76)
T 4f4s_A 49 PMAILGFALSEATGLFCLMVSFLLLF 74 (76)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45689999999999999999988653
No 2
>2k21_A Potassium voltage-gated channel subfamily E member; KCNE1, membrane protein, potassium channel, MINK, auxilliary subunit, micelles, ION transport; NMR {Homo sapiens}
Probab=13.13 E-value=1.6e+02 Score=19.83 Aligned_cols=21 Identities=14% Similarity=0.422 Sum_probs=13.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 034626 31 YTQRMYAFAACLLAGLVCMFL 51 (89)
Q Consensus 31 ~~qRi~gF~~c~~~g~~~~~l 51 (89)
+--=+++|..|+++|++++-+
T Consensus 55 YIL~vmgffgff~~GImLsYi 75 (138)
T 2k21_A 55 YVLMVLGFFGFFTLGIMLSYI 75 (138)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHh
Confidence 334567777777777765543
No 3
>3nw0_B Melanoma-associated antigen G1; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=11.13 E-value=53 Score=23.29 Aligned_cols=12 Identities=0% Similarity=0.147 Sum_probs=8.1
Q ss_pred HHHhhchhhhhc
Q 034626 77 LRYRACSANKYD 88 (89)
Q Consensus 77 ~~fL~Gp~~q~k 88 (89)
.-|+|||++|..
T Consensus 169 yeflWGpRA~aE 180 (217)
T 3nw0_B 169 YEFQWGPRTNLE 180 (217)
T ss_dssp CCEECCHHHHTT
T ss_pred EEEEEcCchhhh
Confidence 447788877754
No 4
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=10.92 E-value=94 Score=15.05 Aligned_cols=13 Identities=8% Similarity=0.043 Sum_probs=9.2
Q ss_pred hHHHhhchhhhhc
Q 034626 76 SLRYRACSANKYD 88 (89)
Q Consensus 76 s~~fL~Gp~~q~k 88 (89)
|--.|.|++.|+|
T Consensus 12 skpwlvgwwdqfk 24 (26)
T 1loi_A 12 SKPWLVGWWDQFK 24 (26)
T ss_dssp SCTTGGGGHHHHT
T ss_pred CCchhhhhHHHhc
Confidence 3345788888876
No 5
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=9.65 E-value=1.4e+02 Score=22.06 Aligned_cols=26 Identities=4% Similarity=-0.141 Sum_probs=15.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034626 28 SLSYTQRMYAFAACLLAGLVCMFLSI 53 (89)
Q Consensus 28 ~LS~~qRi~gF~~c~~~g~~~~~ls~ 53 (89)
+.++.+|++|+++.++.-.++..+..
T Consensus 13 ~~~~~eR~~W~~~~l~s~~~~~~~~~ 38 (438)
T 2qts_A 13 ERLSLKRVVWALCFMGSLALLALVCT 38 (438)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999998887765555544443
No 6
>1bl1_A Parathyroid hormone receptor; micelle structures, calciotropic hormones, structures; NMR {Homo sapiens} SCOP: j.15.1.1
Probab=8.79 E-value=1.1e+02 Score=15.57 Aligned_cols=10 Identities=20% Similarity=0.780 Sum_probs=6.5
Q ss_pred hhHHHHhhhH
Q 034626 61 KFAILFTFGN 70 (89)
Q Consensus 61 kFA~lyTlG~ 70 (89)
+.-++||+|-
T Consensus 19 RL~~iYTVGY 28 (31)
T 1bl1_A 19 RLGMIYTVGY 28 (31)
T ss_dssp SSHHHHHHHH
T ss_pred heeeEEEEee
Confidence 3567777774
No 7
>3rf3_C Invasin IPAA, 70 kDa antigen; alpha-helix bundle domain, cytoskeletal protein, protein-Pro interactions, cell adhesion, cytoskeleton; 1.61A {Shigella flexneri}
Probab=8.40 E-value=93 Score=15.43 Aligned_cols=13 Identities=15% Similarity=0.309 Sum_probs=7.9
Q ss_pred HHHhhhHHHHHHh
Q 034626 64 ILFTFGNLLAVGS 76 (89)
Q Consensus 64 ~lyTlG~il~l~s 76 (89)
+..++.|++++.+
T Consensus 16 vtnslsnlislig 28 (29)
T 3rf3_C 16 VTNSLSNLISLIG 28 (29)
T ss_dssp HHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHhc
Confidence 4567777766554
No 8
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=7.36 E-value=3e+02 Score=14.02 Aligned_cols=13 Identities=15% Similarity=0.268 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 034626 37 AFAACLLAGLVCM 49 (89)
Q Consensus 37 gF~~c~~~g~~~~ 49 (89)
-|+....+|++++
T Consensus 7 t~ll~~tlgiiFF 19 (32)
T 3arc_T 7 VFIFACIIALFFF 19 (32)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444433
No 9
>2kjf_A Carnocyclin-A; circular bacteriocin, antimicrobial peptide, solution helical, saposin-fold, antibiotic, antimicrobial, bacteriocin; NMR {Carnobacterium maltaromaticum}
Probab=7.35 E-value=1.4e+02 Score=16.95 Aligned_cols=11 Identities=18% Similarity=0.543 Sum_probs=8.0
Q ss_pred HhhhHHHHHHh
Q 034626 66 FTFGNLLAVGS 76 (89)
Q Consensus 66 yTlG~il~l~s 76 (89)
.|+||++++.+
T Consensus 22 ltvgsiisilg 32 (60)
T 2kjf_A 22 LTVGSIISILG 32 (60)
T ss_dssp CCHHHHHHHHC
T ss_pred chhhHHHHhhc
Confidence 37888888764
No 10
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=6.93 E-value=3.7e+02 Score=15.86 Aligned_cols=13 Identities=15% Similarity=0.163 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHhh
Q 034626 45 GLVCMFLSIIVFV 57 (89)
Q Consensus 45 g~~~~~ls~~~~~ 57 (89)
+.+++++++++++
T Consensus 25 A~vLfi~GI~iil 37 (67)
T 2jp3_A 25 GGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3445666666554
Done!