Query 034626
Match_columns 89
No_of_seqs 103 out of 314
Neff 5.3
Searched_HMMs 13730
Date Mon Mar 25 07:29:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034626.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034626hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1vf5c3 f.23.23.1 (C:250-286) 16.9 65 0.0047 15.9 3.3 13 33-45 4-16 (37)
2 d1q90a3 f.23.23.1 (A:248-292) 12.8 96 0.007 15.8 3.3 12 33-44 3-14 (45)
3 d1lr7a1 g.3.11.3 (A:64-88) Dom 8.6 19 0.0013 16.5 -1.0 9 81-89 8-16 (26)
4 d2axtl1 f.23.31.1 (L:1-37) Pho 7.9 1.4E+02 0.01 14.4 4.2 25 26-50 9-33 (37)
5 d2bs2c1 f.21.2.1 (C:1-254) Fum 7.6 1.2E+02 0.0085 20.0 2.5 24 28-51 124-147 (254)
6 d3bz6a2 a.4.5.75 (A:97-180) Hy 6.8 83 0.006 18.0 1.1 14 72-85 12-25 (84)
7 d1nekc_ f.21.2.2 (C:) Succinat 6.4 2.1E+02 0.015 16.4 3.0 22 28-49 25-46 (129)
8 d1jb0m_ f.23.19.1 (M:) Subunit 6.0 1.7E+02 0.012 13.5 4.4 26 28-53 2-27 (31)
9 d1zyba1 a.4.5.4 (A:148-220) Pr 4.0 2.8E+02 0.021 14.2 2.2 13 27-39 1-13 (73)
10 d2g7ga2 a.121.1.1 (A:74-205) P 3.8 2.3E+02 0.017 15.5 1.8 11 29-39 1-11 (132)
No 1
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.91 E-value=65 Score=15.86 Aligned_cols=13 Identities=15% Similarity=0.015 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHH
Q 034626 33 QRMYAFAACLLAG 45 (89)
Q Consensus 33 qRi~gF~~c~~~g 45 (89)
.|++|.+++++.-
T Consensus 4 ~Rv~gl~~F~~~v 16 (37)
T d1vf5c3 4 NRVKWMIAFICLV 16 (37)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6898888777653
No 2
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=12.82 E-value=96 Score=15.79 Aligned_cols=12 Identities=8% Similarity=0.099 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHH
Q 034626 33 QRMYAFAACLLA 44 (89)
Q Consensus 33 qRi~gF~~c~~~ 44 (89)
.|+.|.+++++.
T Consensus 3 ~Rv~gll~F~~~ 14 (45)
T d1q90a3 3 ARIQGLLVFFSF 14 (45)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 688888877665
No 3
>d1lr7a1 g.3.11.3 (A:64-88) Domain of follistatin {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=8.57 E-value=19 Score=16.54 Aligned_cols=9 Identities=11% Similarity=0.158 Sum_probs=6.2
Q ss_pred hchhhhhcC
Q 034626 81 ACSANKYDV 89 (89)
Q Consensus 81 ~Gp~~q~k~ 89 (89)
.||.++.||
T Consensus 8 cgpgk~c~m 16 (26)
T d1lr7a1 8 CGPGKKCRM 16 (26)
T ss_dssp CCTTEEEEE
T ss_pred cCCCccccc
Confidence 477777765
No 4
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.88 E-value=1.4e+02 Score=14.42 Aligned_cols=25 Identities=16% Similarity=0.081 Sum_probs=20.0
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHH
Q 034626 26 ICSLSYTQRMYAFAACLLAGLVCMF 50 (89)
Q Consensus 26 ~~~LS~~qRi~gF~~c~~~g~~~~~ 50 (89)
--.|.++.-..|-...++.|++++.
T Consensus 9 ~veLNrtsLy~GlLlifvl~vLFss 33 (37)
T d2axtl1 9 PVELNRTSLYLGLLLILVLALLFSS 33 (37)
T ss_dssp CBCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHHHHHHHHH
Confidence 3478998888888888888888764
No 5
>d2bs2c1 f.21.2.1 (C:1-254) Fumarate reductase respiratory complex cytochrome b subunit, FrdC {Wolinella succinogenes [TaxId: 844]}
Probab=7.61 E-value=1.2e+02 Score=19.98 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=19.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHH
Q 034626 28 SLSYTQRMYAFAACLLAGLVCMFL 51 (89)
Q Consensus 28 ~LS~~qRi~gF~~c~~~g~~~~~l 51 (89)
-+++.||+.|+++.+.+.....-+
T Consensus 124 ~~~~~q~~tG~ill~fi~~Hl~~~ 147 (254)
T d2bs2c1 124 TLWWIQAMTGFAMFFLGSVHLYIM 147 (254)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999888877654
No 6
>d3bz6a2 a.4.5.75 (A:97-180) Hypothetical protein PSPTO2686 {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=6.82 E-value=83 Score=18.03 Aligned_cols=14 Identities=7% Similarity=-0.002 Sum_probs=9.2
Q ss_pred HHHHhHHHhhchhh
Q 034626 72 LAVGSLRYRACSAN 85 (89)
Q Consensus 72 l~l~s~~fL~Gp~~ 85 (89)
.++....+|.||.+
T Consensus 12 ~All~~LlLRGpQT 25 (84)
T d3bz6a2 12 VILTGLLLLRGPQT 25 (84)
T ss_dssp HHHHHHHHHHCSBC
T ss_pred HHHHHHHHhcCCCC
Confidence 34566777888754
No 7
>d1nekc_ f.21.2.2 (C:) Succinate dehydrogenase subunit SdhC {Escherichia coli [TaxId: 562]}
Probab=6.39 E-value=2.1e+02 Score=16.42 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=15.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHH
Q 034626 28 SLSYTQRMYAFAACLLAGLVCM 49 (89)
Q Consensus 28 ~LS~~qRi~gF~~c~~~g~~~~ 49 (89)
-+|-..|+.|.+..++..++..
T Consensus 25 ~~SI~HRisGv~l~~~~~~~~~ 46 (129)
T d1nekc_ 25 IASILHRVSGVITFVAVGILLW 46 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4577899999987766655443
No 8
>d1jb0m_ f.23.19.1 (M:) Subunit XII of photosystem I reaction centre, PsaM {Synechococcus elongatus [TaxId: 32046]}
Probab=6.00 E-value=1.7e+02 Score=13.54 Aligned_cols=26 Identities=31% Similarity=0.345 Sum_probs=19.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHH
Q 034626 28 SLSYTQRMYAFAACLLAGLVCMFLSI 53 (89)
Q Consensus 28 ~LS~~qRi~gF~~c~~~g~~~~~ls~ 53 (89)
++|-+|-++..++.+.=|++-+=+++
T Consensus 2 ~lsdtqv~valvial~pg~lafrlat 27 (31)
T d1jb0m_ 2 ALTDTQVYVALVIALLPAVLAFRLST 27 (31)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67888988888877777776655543
No 9
>d1zyba1 a.4.5.4 (A:148-220) Probable transcription regulator BT4300, C-terminal domain {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=4.04 E-value=2.8e+02 Score=14.16 Aligned_cols=13 Identities=15% Similarity=0.304 Sum_probs=9.2
Q ss_pred CCCCHHHHHHHHH
Q 034626 27 CSLSYTQRMYAFA 39 (89)
Q Consensus 27 ~~LS~~qRi~gF~ 39 (89)
|+.+-.||+.-|+
T Consensus 1 ~T~dv~~Rla~~L 13 (73)
T d1zyba1 1 PTLDLKSKIIRFF 13 (73)
T ss_dssp CCCSHHHHHHHHH
T ss_pred CCCCHHHHHHHHH
Confidence 4667788887765
No 10
>d2g7ga2 a.121.1.1 (A:74-205) Putative transcriptional regulator Rha04620 {Rhodococcus sp. rha1 [TaxId: 101510]}
Probab=3.84 E-value=2.3e+02 Score=15.48 Aligned_cols=11 Identities=18% Similarity=0.465 Sum_probs=0.0
Q ss_pred CCHHHHHHHHH
Q 034626 29 LSYTQRMYAFA 39 (89)
Q Consensus 29 LS~~qRi~gF~ 39 (89)
|+|++|+..++
T Consensus 1 lpWr~~lr~~a 11 (132)
T d2g7ga2 1 LPWDEAFSEWA 11 (132)
T ss_dssp SCHHHHHHHHH
T ss_pred CChHHHHHHHH
Done!