BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034629
         (89 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2L7N|A Chain A, Nmr Structure Of The B Domain Of Talin
          Length = 168

 Score = 25.8 bits (55), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)

Query: 6   VALLSEELALQKSV---ANETLQRSKELIMDARKASSH 40
           VA L+ + A+Q  V   A++ L ++  LI +A+KAS H
Sbjct: 99  VAALTSDPAVQAIVLDTASDVLDKASSLIEEAKKASGH 136


>pdb|1LY1|A Chain A, Structure And Mechanism Of T4 Polynucleotide Kinase
          Length = 181

 Score = 25.4 bits (54), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)

Query: 62  AEKDLGEESRLSALWEKRAREHGWK 86
           ++ +L  E RL+  WE  A+E+GWK
Sbjct: 84  SDTNLNPERRLA--WETFAKEYGWK 106


>pdb|3RP6|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
           With Fad
 pdb|3RP7|A Chain A, Crystal Structure Of Klebsiella Pneumoniae Hpxo Complexed
           With Fad And Uric Acid
          Length = 407

 Score = 25.4 bits (54), Expect = 9.3,   Method: Composition-based stats.
 Identities = 12/46 (26%), Positives = 26/46 (56%)

Query: 37  ASSHYQREAEKCTAGIETCEEARERAEKDLGEESRLSALWEKRARE 82
           A++  + EA++C    +   +AR+R +   G++ +L+  W +  RE
Sbjct: 342 AAALREYEAQRCDRVRDLVLKARKRCDITHGKDXQLTEAWYQELRE 387


>pdb|2IA5|A Chain A, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|B Chain B, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|C Chain C, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|D Chain D, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|E Chain E, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|F Chain F, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|G Chain G, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|H Chain H, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|I Chain I, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|J Chain J, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|K Chain K, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium.
 pdb|2IA5|L Chain L, T4 Polynucleotide KinasePHOSPHATASE WITH BOUND SULFATE AND
           Magnesium
          Length = 301

 Score = 25.4 bits (54), Expect = 9.5,   Method: Composition-based stats.
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)

Query: 62  AEKDLGEESRLSALWEKRAREHGWK 86
           ++ +L  E RL+  WE  A+E+GWK
Sbjct: 84  SDTNLNPERRLA--WETFAKEYGWK 106


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.307    0.121    0.328 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,181,481
Number of Sequences: 62578
Number of extensions: 59855
Number of successful extensions: 134
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 11
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 45 (21.9 bits)