BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034629
         (89 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q5M7W4|TMC5_RAT Transmembrane channel-like protein 5 OS=Rattus norvegicus GN=Tmc5
           PE=2 SV=2
          Length = 965

 Score = 32.3 bits (72), Expect = 0.93,   Method: Composition-based stats.
 Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 5/75 (6%)

Query: 17  KSVANE--TLQRSKEL--IMDARK-ASSHYQREAEKCTAGIETCEEARERAEKDLGEESR 71
           K++ N+  T+Q  +EL  I+D  K   SH   EA  C   + +   A  R +  L E   
Sbjct: 326 KTIRNQPRTMQEKRELRKIVDKEKNKQSHGTFEANCCAQCLSSLSLAYRRTKSSLSELLN 385

Query: 72  LSALWEKRAREHGWK 86
             +LW+KR +  G K
Sbjct: 386 YISLWQKRFKVIGGK 400


>sp|P53878|YNS1_YEAST Uncharacterized oxidoreductase YNL181W OS=Saccharomyces cerevisiae
           (strain ATCC 204508 / S288c) GN=YNL181W PE=1 SV=2
          Length = 407

 Score = 28.9 bits (63), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 53  ETCEEARERAEKDL--GEESRLSALWEKRAREHGWKDDS 89
           E CEE RE+ + +L   E+  LS LWE R     W D+S
Sbjct: 94  EWCEELREKTKNELIFVEKCDLSNLWEIRKFATSWLDNS 132


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.307    0.121    0.328 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 27,868,223
Number of Sequences: 539616
Number of extensions: 835546
Number of successful extensions: 3805
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 58
Number of HSP's that attempted gapping in prelim test: 3735
Number of HSP's gapped (non-prelim): 136
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 55 (25.8 bits)