Query 034629
Match_columns 89
No_of_seqs 39 out of 41
Neff 2.5
Searched_HMMs 46136
Date Fri Mar 29 04:50:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034629.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034629hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF06364 DUF1068: Protein of u 100.0 2.3E-52 4.9E-57 311.8 11.4 89 1-89 82-170 (176)
2 KOG1823 DRIM (Down-regulated i 99.8 3.6E-20 7.8E-25 167.0 10.0 88 1-88 1273-1364(1364)
3 KOG3915 Transcription regulato 44.0 1.6E+02 0.0035 26.6 8.0 55 27-81 512-566 (641)
4 PF10642 Tom5: Mitochondrial i 35.4 49 0.0011 20.5 2.6 19 10-28 11-29 (49)
5 PRK09098 type III secretion sy 29.2 1.1E+02 0.0023 23.4 4.1 23 23-45 48-70 (233)
6 KOG0994 Extracellular matrix g 24.3 4.6E+02 0.01 26.5 8.1 38 37-74 1666-1703(1758)
7 PRK06669 fliH flagellar assemb 21.7 3.6E+02 0.0078 20.4 6.2 10 78-87 117-126 (281)
8 PF08970 Sda: Sporulation inhi 19.1 91 0.002 19.2 1.7 15 2-16 22-36 (46)
9 COG1598 Predicted nuclease of 17.6 93 0.002 19.5 1.6 22 46-67 24-45 (73)
10 PF05596 Taeniidae_ag: Taeniid 17.0 2.9E+02 0.0062 17.8 3.8 29 42-70 30-58 (64)
No 1
>PF06364 DUF1068: Protein of unknown function (DUF1068); InterPro: IPR010471 This family consists of several hypothetical plant proteins from Arabidopsis thaliana and Oryza sativa. The function of this family is unknown.
Probab=100.00 E-value=2.3e-52 Score=311.81 Aligned_cols=89 Identities=58% Similarity=0.951 Sum_probs=87.6
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHhHHHHHHHHHHHHHHhhHhHHHHHHHH
Q 034629 1 MEKDTVALLSEELALQKSVANETLQRSKELIMDARKASSHYQREAEKCTAGIETCEEARERAEKDLGEESRLSALWEKRA 80 (89)
Q Consensus 1 meK~f~~LLsEELkLqe~vA~e~~~~~~~~lleAKk~aSqYQkEAeKCn~gmeTCEeARErAEa~L~~e~KltalWE~RA 80 (89)
|+|+|+|||+|||+||++||+++++|+|++|+||||++|||||||||||+||||||+||||||++|++|||||+|||+||
T Consensus 82 meK~~~~LL~EELkLqe~~A~e~~~~~~~~lleAkk~asqYQkEAeKCnsgmeTCEeAREkaEa~L~~e~KltalWE~RA 161 (176)
T PF06364_consen 82 MEKNFVDLLSEELKLQEAVANENQRRADMALLEAKKMASQYQKEAEKCNSGMETCEEAREKAEAALVEERKLTALWEQRA 161 (176)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcCC
Q 034629 81 REHGWKDDS 89 (89)
Q Consensus 81 Rq~GW~~~~ 89 (89)
||+||+++.
T Consensus 162 Rq~GWk~~~ 170 (176)
T PF06364_consen 162 RQLGWKEGA 170 (176)
T ss_pred HHcCCCccc
Confidence 999999873
No 2
>KOG1823 consensus DRIM (Down-regulated in metastasis)-like proteins [Defense mechanisms]
Probab=99.82 E-value=3.6e-20 Score=167.04 Aligned_cols=88 Identities=40% Similarity=0.687 Sum_probs=86.0
Q ss_pred CchhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhh--hhHHhHHHHH--HHHHHHHHHhhHhHHHH
Q 034629 1 MEKDTVALLSEELALQKSVANETLQRSKELIMDARKASSHYQREAEKCT--AGIETCEEAR--ERAEKDLGEESRLSALW 76 (89)
Q Consensus 1 meK~f~~LLsEELkLqe~vA~e~~~~~~~~lleAKk~aSqYQkEAeKCn--~gmeTCEeAR--ErAEa~L~~e~KltalW 76 (89)
++|+|++||.+||++++.++.+++.|.++.|+++|..+|+|||++++|| ++|++||.+| ++++|++.++||.+..|
T Consensus 1273 ~~~~yl~ll~~eLk~~e~q~l~~l~~e~i~lLe~K~~as~y~k~~~~c~~~a~e~~~er~rk~ap~~Aa~~K~rK~~~k~ 1352 (1364)
T KOG1823|consen 1273 VEKAYLELLTEELKLEEAQALEKLRREDIGLLEAKVGASSYQKEAAKCNKQAAEERCERARKTAPAEAALKKQRKHTRKW 1352 (1364)
T ss_pred hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhcChhhhhHHHHHHHHHHH
Confidence 5789999999999999999999999999999999999999999999999 9999999999 99999999999999999
Q ss_pred HHHHHHcCCCcC
Q 034629 77 EKRAREHGWKDD 88 (89)
Q Consensus 77 E~RARq~GW~~~ 88 (89)
|.|+|+.||+++
T Consensus 1353 E~Rkr~k~~~~~ 1364 (1364)
T KOG1823|consen 1353 EERKRQKGWRGG 1364 (1364)
T ss_pred HHHHhhcccCCC
Confidence 999999999874
No 3
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=43.96 E-value=1.6e+02 Score=26.60 Aligned_cols=55 Identities=31% Similarity=0.303 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHhhhhhHHhHHHHHHHHHHHHHHhhHhHHHHHHHHH
Q 034629 27 SKELIMDARKASSHYQREAEKCTAGIETCEEARERAEKDLGEESRLSALWEKRAR 81 (89)
Q Consensus 27 ~~~~lleAKk~aSqYQkEAeKCn~gmeTCEeARErAEa~L~~e~KltalWE~RAR 81 (89)
.++++-.|+-..-|+|-|-.-=-..---=.|-||.-|..|+.|+||.++.+.|-+
T Consensus 512 lkva~dnar~qekQiq~Ek~ELkmd~lrerelreslekql~~ErklR~~~qkr~k 566 (641)
T KOG3915|consen 512 LKVAIDNARAQEKQIQLEKTELKMDFLRERELRESLEKQLAMERKLRAIVQKRLK 566 (641)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556666666666666554333323333357899999999999999999998865
No 4
>PF10642 Tom5: Mitochondrial import receptor subunit or translocase; InterPro: IPR019603 This entry represents a short family of yeast proteins. Tom5 is one of three very small translocases of the mitochondrial outer membrane. Tom5 links mitochondrial preprotein receptors to the general import pore []. Although Tom5 has allegedly been identified in vertebrates this could not be confirmed.
Probab=35.42 E-value=49 Score=20.50 Aligned_cols=19 Identities=26% Similarity=0.323 Sum_probs=16.8
Q ss_pred HHHHHhhHHHHHHHHHHHH
Q 034629 10 SEELALQKSVANETLQRSK 28 (89)
Q Consensus 10 sEELkLqe~vA~e~~~~~~ 28 (89)
.||+|+.|..|+.+.+++-
T Consensus 11 ~eE~k~~e~~A~~Tvk~a~ 29 (49)
T PF10642_consen 11 EEEIKAAEAQANFTVKNAA 29 (49)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4899999999999998875
No 5
>PRK09098 type III secretion system protein HrpB; Validated
Probab=29.17 E-value=1.1e+02 Score=23.41 Aligned_cols=23 Identities=17% Similarity=0.306 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHH
Q 034629 23 TLQRSKELIMDARKASSHYQREA 45 (89)
Q Consensus 23 ~~~~~~~~lleAKk~aSqYQkEA 45 (89)
...+++..|.+|+.-+..+-.+|
T Consensus 48 Ar~~A~~Il~~A~~~A~~I~~~A 70 (233)
T PRK09098 48 ARARAERIVAEARAQAEAILEAA 70 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555544444444
No 6
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=24.29 E-value=4.6e+02 Score=26.52 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=26.6
Q ss_pred HHhHHHHHHHhhhhhHHhHHHHHHHHHHHHHHhhHhHH
Q 034629 37 ASSHYQREAEKCTAGIETCEEARERAEKDLGEESRLSA 74 (89)
Q Consensus 37 ~aSqYQkEAeKCn~gmeTCEeARErAEa~L~~e~Klta 74 (89)
+-++|++--.-=-.-|+--..||+|||....+-+||..
T Consensus 1666 lq~~~~~~~~l~~~r~~g~~~ar~rAe~L~~eA~~Ll~ 1703 (1758)
T KOG0994|consen 1666 LQKYYELVDRLLEKRMEGSQAARERAEQLRTEAEKLLG 1703 (1758)
T ss_pred HHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence 34445444333445688889999999998888887764
No 7
>PRK06669 fliH flagellar assembly protein H; Validated
Probab=21.73 E-value=3.6e+02 Score=20.38 Aligned_cols=10 Identities=20% Similarity=0.724 Sum_probs=4.5
Q ss_pred HHHHHcCCCc
Q 034629 78 KRAREHGWKD 87 (89)
Q Consensus 78 ~RARq~GW~~ 87 (89)
..|++.|+.+
T Consensus 117 ~~a~~eGy~e 126 (281)
T PRK06669 117 EEAKAEGYEE 126 (281)
T ss_pred HHHHHHHHHH
Confidence 3344555443
No 8
>PF08970 Sda: Sporulation inhibitor A; InterPro: IPR015064 Members of this protein group contain two antiparallel alpha helices that are linked by a highly structured inter-helix loop to form a helical hairpin; the structure is stabilised by numerous hydrophobic and electrostatic interactions. These sporulation inhibitors are antikinases that bind to the histidine kinase KinA phosphotransfer domain and act as a molecular barricade that inhibit productive interaction between the ATP binding site and the phosphorylatable KinA His residue. This results in the inhibition of sporulation (by preventing phosphorylation of spo0A) []. ; PDB: 3FYR_B 1PV0_A.
Probab=19.09 E-value=91 Score=19.15 Aligned_cols=15 Identities=33% Similarity=0.543 Sum_probs=11.7
Q ss_pred chhHHHHHHHHHHhh
Q 034629 2 EKDTVALLSEELALQ 16 (89)
Q Consensus 2 eK~f~~LLsEELkLq 16 (89)
+..|..||.+||.-+
T Consensus 22 ~~dFI~Ll~~Ei~rR 36 (46)
T PF08970_consen 22 DPDFIRLLEEEIQRR 36 (46)
T ss_dssp -HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHc
Confidence 568999999998644
No 9
>COG1598 Predicted nuclease of the RNAse H fold, HicB family [General function prediction only]
Probab=17.63 E-value=93 Score=19.48 Aligned_cols=22 Identities=32% Similarity=0.391 Sum_probs=19.2
Q ss_pred HhhhhhHHhHHHHHHHHHHHHH
Q 034629 46 EKCTAGIETCEEARERAEKDLG 67 (89)
Q Consensus 46 eKCn~gmeTCEeARErAEa~L~ 67 (89)
.-|.+.-+|=|+|++.++.+|.
T Consensus 24 pgc~s~G~T~eea~~n~~eai~ 45 (73)
T COG1598 24 PGCHSQGETLEEALQNAKEAIE 45 (73)
T ss_pred CCccccCCCHHHHHHHHHHHHH
Confidence 4589999999999999998875
No 10
>PF05596 Taeniidae_ag: Taeniidae antigen; InterPro: IPR008860 This family consists of several antigen proteins from Taenia and Echinococcus (tapeworm) species.
Probab=17.03 E-value=2.9e+02 Score=17.80 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=23.5
Q ss_pred HHHHHhhhhhHHhHHHHHHHHHHHHHHhh
Q 034629 42 QREAEKCTAGIETCEEARERAEKDLGEES 70 (89)
Q Consensus 42 QkEAeKCn~gmeTCEeARErAEa~L~~e~ 70 (89)
|+=|+-++-=.++|-++|-+..+.|.+--
T Consensus 30 qkIa~l~kdw~~~~~~~r~KiR~~L~ey~ 58 (64)
T PF05596_consen 30 QKIAQLAKDWNEICQEVRKKIRAALAEYC 58 (64)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566677788999999999999998753
Done!