BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 034630
(89 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2WZJ|A Chain A, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|B Chain B, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|C Chain C, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|D Chain D, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|E Chain E, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
pdb|2WZJ|F Chain F, Catalytic And Uba Domain Of Kinase Mark2(PAR-1) K82r,
T208e Double Mutant
Length = 327
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 18/69 (26%)
Query: 2 SLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIG 61
SL++++ EV+ MKV PN +K +F + ++T+ Y+ V G
Sbjct: 56 SLQKLFREVRIMKVLNHPNIVK-LFEVIETEKTL----------YL-------VMEYASG 97
Query: 62 GMIFSYLVA 70
G +F YLVA
Sbjct: 98 GEVFDYLVA 106
>pdb|1ZMV|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
pdb|1ZMV|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
K82r Mutant
Length = 327
Score = 25.4 bits (54), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 18/69 (26%)
Query: 2 SLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIG 61
SL++++ EV+ MKV PN +K +F + ++T+ Y+ V G
Sbjct: 56 SLQKLFREVRIMKVLNHPNIVK-LFEVIETEKTL----------YL-------VMEYASG 97
Query: 62 GMIFSYLVA 70
G +F YLVA
Sbjct: 98 GEVFDYLVA 106
>pdb|1ZMW|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
pdb|1ZMW|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
T208aS212A INACTIVE DOUBLE MUTANT
Length = 327
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 18/69 (26%)
Query: 2 SLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIG 61
SL++++ EV+ MKV PN +K +F + ++T+ Y+ V G
Sbjct: 56 SLQKLFREVRIMKVLNHPNIVK-LFEVIETEKTL----------YL-------VMEYASG 97
Query: 62 GMIFSYLVA 70
G +F YLVA
Sbjct: 98 GEVFDYLVA 106
>pdb|1ZMU|A Chain A, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
pdb|1ZMU|B Chain B, Catalytic And Ubiqutin-Associated Domains Of Mark2PAR-1:
Wild Type
Length = 327
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 18/69 (26%)
Query: 2 SLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIG 61
SL++++ EV+ MKV PN +K +F + ++T+ Y+ V G
Sbjct: 56 SLQKLFREVRIMKVLNHPNIVK-LFEVIETEKTL----------YL-------VMEYASG 97
Query: 62 GMIFSYLVA 70
G +F YLVA
Sbjct: 98 GEVFDYLVA 106
>pdb|2D59|A Chain A, Hypothetical Protein From Pyrococcus Horikoshii Ot3
pdb|2D5A|A Chain A, Hypothetical Protein From Pyrococcus Horikoshii Ot3
pdb|2E6U|X Chain X, Crystal Structure Of Hypothetical Protein Ph1109 From
Pyrococcus Horikoshii
Length = 144
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 11/43 (25%)
Query: 7 YNEVKGMK----VKELPN-------YLKPMFSMNYVKQTVQRG 38
Y EV G K V ++P+ ++KP +M YV+Q +++G
Sbjct: 59 YEEVLGRKCYPSVLDIPDKIEVVDLFVKPKLTMEYVEQAIKKG 101
>pdb|2R0I|A Chain A, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
pdb|2R0I|B Chain B, Crystal Structure Of A Kinase Mark2PAR-1 Mutant
Length = 327
Score = 25.4 bits (54), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 18/69 (26%)
Query: 2 SLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIG 61
SL++++ EV+ MKV PN +K +F + ++T+ Y+ V G
Sbjct: 56 SLQKLFREVRIMKVLNHPNIVK-LFEVIETEKTL----------YL-------VMEYASG 97
Query: 62 GMIFSYLVA 70
G +F YLVA
Sbjct: 98 GEVFDYLVA 106
>pdb|3IEC|A Chain A, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY
KINASES BY Mimicking Host Substrates
pdb|3IEC|B Chain B, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY
KINASES BY Mimicking Host Substrates
pdb|3IEC|C Chain C, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY
KINASES BY Mimicking Host Substrates
pdb|3IEC|D Chain D, Helicobacter Pylori Caga Inhibits Par1MARK FAMILY
KINASES BY Mimicking Host Substrates
Length = 319
Score = 25.4 bits (54), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 18/69 (26%)
Query: 2 SLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIG 61
SL++++ EV+ MKV PN +K +F + ++T+ Y+ V G
Sbjct: 49 SLQKLFREVRIMKVLNHPNIVK-LFEVIETEKTL----------YL-------VMEYASG 90
Query: 62 GMIFSYLVA 70
G +F YLVA
Sbjct: 91 GEVFDYLVA 99
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,843,540
Number of Sequences: 62578
Number of extensions: 100121
Number of successful extensions: 213
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 211
Number of HSP's gapped (non-prelim): 11
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)