BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 034630
         (89 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|D3ZAF6|ATPK_RAT ATP synthase subunit f, mitochondrial OS=Rattus norvegicus
          GN=Atp5j2 PE=1 SV=1
          Length = 88

 Score = 34.7 bits (78), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 7/78 (8%)

Query: 13 MKVKELPNY-LKPMFSMNYVKQTVQRGLDNYHAKYI--QTSSFDPVYHVCIGGMIFSYLV 69
          +K++ELP++ L   F+ + +    +RG D Y+ KYI  +  S   +  V    ++FSY +
Sbjct: 15 VKLRELPSWILMRDFTPSGIAGAFRRGYDRYYNKYINVRKGSISGINMVLAAYVVFSYCI 74

Query: 70 ALPEERRHLEHQQHAKEH 87
          +  E    L+H++  K H
Sbjct: 75 SYKE----LKHERRRKYH 88


>sp|P56135|ATPK_MOUSE ATP synthase subunit f, mitochondrial OS=Mus musculus GN=Atp5j2
          PE=1 SV=3
          Length = 88

 Score = 32.7 bits (73), Expect = 0.65,   Method: Compositional matrix adjust.
 Identities = 22/78 (28%), Positives = 41/78 (52%), Gaps = 7/78 (8%)

Query: 13 MKVKELPNYLKPM-FSMNYVKQTVQRGLDNYHAKYI--QTSSFDPVYHVCIGGMIFSYLV 69
          +K+ ELP+++    F+ + +    +RG D Y+ KYI  +  S   +  V    ++FSY +
Sbjct: 15 VKLGELPSWIMMRDFTPSGIAGAFRRGYDRYYNKYINVRKGSISGISMVLAAYVVFSYCI 74

Query: 70 ALPEERRHLEHQQHAKEH 87
          +  E    L+H++  K H
Sbjct: 75 SYKE----LKHERRRKYH 88


>sp|Q0I067|CINAL_SHESR CinA-like protein OS=Shewanella sp. (strain MR-7) GN=Shewmr7_0233
           PE=3 SV=1
          Length = 425

 Score = 30.8 bits (68), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 43  HAKYIQTSSFDPVYHVCIGGMIFSYLVALPEERRHLEH 80
           HAK + +     V   C GGMI S LV  P    +L+H
Sbjct: 261 HAKLLNSGLTLSVAESCTGGMITSQLVDFPGSSSYLQH 298


>sp|Q0HDU2|CINAL_SHESM CinA-like protein OS=Shewanella sp. (strain MR-4) GN=Shewmr4_3712
           PE=3 SV=1
          Length = 425

 Score = 30.8 bits (68), Expect = 2.6,   Method: Composition-based stats.
 Identities = 15/38 (39%), Positives = 19/38 (50%)

Query: 43  HAKYIQTSSFDPVYHVCIGGMIFSYLVALPEERRHLEH 80
           HAK + +     V   C GGMI S LV  P    +L+H
Sbjct: 261 HAKLLNSGLTLSVAESCTGGMITSQLVDFPGSSSYLQH 298


>sp|Q6BZG3|PPME1_DEBHA Protein phosphatase methylesterase 1 OS=Debaryomyces hansenii
           (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
           IGC 2968) GN=PPE1 PE=3 SV=2
          Length = 390

 Score = 29.6 bits (65), Expect = 6.0,   Method: Composition-based stats.
 Identities = 16/52 (30%), Positives = 28/52 (53%)

Query: 22  LKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIGGMIFSYLVALPE 73
           + P +S+  +    +  +D +HAK+   SS   + H   G ++ SYLVA P+
Sbjct: 150 IPPDYSLATITNDCEFIIDEFHAKHALRSSIYLLGHSLGGSVLTSYLVANPD 201


>sp|Q197E9|011L_IIV3 Uncharacterized protein 011L OS=Invertebrate iridescent virus 3
           GN=IIV3-011L PE=4 SV=1
          Length = 751

 Score = 29.3 bits (64), Expect = 6.8,   Method: Composition-based stats.
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 17/85 (20%)

Query: 1   MSLRRIYNEVKGMKVKELPNYLKPMFSMNYVKQTVQR-----GL----DNYHAKYIQTSS 51
           M+L  ++N +K   +      L  +F M Y   TVQ+     GL    D+ H + IQ   
Sbjct: 491 MTLEDLFNTIKPADLNAKNIILSVLFQMLYAVATVQKQFGMGGLFANADSVHVRRIQPGG 550

Query: 52  FDPVYHVCIGGMIFS-----YLVAL 71
           F   +H  + G+ +S     YLV L
Sbjct: 551 F---WHYTVNGLRYSVPNYGYLVIL 572


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.322    0.137    0.414 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,586,693
Number of Sequences: 539616
Number of extensions: 1202746
Number of successful extensions: 2569
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2563
Number of HSP's gapped (non-prelim): 10
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)