Query 034630
Match_columns 89
No_of_seqs 100 out of 118
Neff 4.8
Searched_HMMs 46136
Date Fri Mar 29 04:51:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034630.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/034630hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10206 WRW: Mitochondrial F1 100.0 7.7E-32 1.7E-36 183.2 5.6 72 8-83 29-103 (104)
2 KOG4092 Mitochondrial F1F0-ATP 100.0 1.9E-29 4.1E-34 170.8 5.5 76 8-87 29-108 (108)
3 PF10791 F1F0-ATPsyn_F: Mitoch 99.2 7.5E-12 1.6E-16 84.2 3.6 39 38-79 55-95 (95)
4 PF05542 DUF760: Protein of un 74.3 4.2 9.2E-05 26.2 2.9 62 7-69 4-72 (86)
5 PF10847 DUF2656: Protein of u 48.3 39 0.00085 24.1 4.2 53 7-61 28-86 (132)
6 PF06055 ExoD: Exopolysacchari 47.1 54 0.0012 23.9 4.9 32 17-48 77-111 (187)
7 PF04971 Lysis_S: Lysis protei 46.7 25 0.00053 22.5 2.7 22 64-88 46-67 (68)
8 COG4331 Predicted membrane pro 45.7 42 0.00091 24.7 4.1 38 45-85 126-163 (167)
9 cd08864 SRPBCC_DUF3074 DUF3074 44.8 15 0.00032 27.2 1.7 26 16-41 180-205 (208)
10 PF14261 DUF4351: Domain of un 37.3 33 0.00072 20.7 2.1 26 4-29 9-37 (59)
11 PF14898 DUF4491: Domain of un 35.6 95 0.0021 21.0 4.3 30 56-89 57-86 (94)
12 PF04699 P16-Arc: ARP2/3 compl 32.6 51 0.0011 23.7 2.8 58 2-60 75-147 (152)
13 PF00730 HhH-GPD: HhH-GPD supe 30.4 36 0.00079 21.4 1.6 39 4-48 19-59 (108)
14 COG2862 Predicted membrane pro 27.9 2.5E+02 0.0054 20.7 6.1 23 4-27 82-105 (169)
15 PF02397 Bac_transf: Bacterial 27.5 65 0.0014 23.6 2.7 50 10-59 83-143 (187)
16 PF09125 COX2-transmemb: Cytoc 26.0 92 0.002 17.8 2.5 28 38-69 8-35 (38)
17 PF12108 SF3a60_bindingd: Spli 26.0 31 0.00068 18.4 0.6 12 3-14 9-20 (28)
18 TIGR01947 rnfG electron transp 25.6 1E+02 0.0022 22.2 3.3 41 3-43 131-185 (186)
19 PF08730 Rad33: Rad33; InterP 22.6 84 0.0018 23.3 2.5 57 11-68 28-88 (170)
20 PF02084 Bindin: Bindin; Inte 21.9 46 0.001 25.9 1.0 9 75-83 134-142 (238)
21 PF09782 NDUF_B6: NADH:ubiquin 21.8 1.1E+02 0.0025 22.2 3.0 24 49-72 86-109 (156)
22 PF13789 DUF4181: Domain of un 21.5 1.6E+02 0.0035 19.4 3.5 30 55-87 60-89 (110)
23 PF08673 RsbU_N: Phosphoserine 21.4 49 0.0011 21.1 0.9 48 15-62 23-73 (77)
24 PF15099 PIRT: Phosphoinositid 21.4 1.4E+02 0.0031 21.2 3.3 35 50-87 80-115 (129)
25 PF08653 DASH_Dam1: DASH compl 21.3 1.1E+02 0.0024 18.7 2.4 18 55-72 38-55 (58)
26 PF11274 DUF3074: Protein of u 21.2 60 0.0013 23.6 1.4 25 16-40 158-182 (184)
27 PF10256 Erf4: Golgin subfamil 21.2 2.5E+02 0.0054 18.3 6.5 47 17-64 21-67 (118)
28 PF05232 BTP: Bacterial Transm 21.1 1.3E+02 0.0027 18.5 2.7 30 51-80 34-63 (67)
29 COG2154 Pterin-4a-carbinolamin 20.9 29 0.00064 23.5 -0.2 23 1-23 1-23 (101)
30 smart00831 Cation_ATPase_N Cat 20.4 1.3E+02 0.0028 17.2 2.6 18 53-70 46-63 (64)
No 1
>PF10206 WRW: Mitochondrial F1F0-ATP synthase, subunit f; InterPro: IPR019344 This entry represents small proteins of approximately 110 amino acids, which are highly conserved from nematodes to humans. Some have been annotated in Swiss-Prot as being the f subunit of mitochondrial F1F0-ATP synthase but this could not be confirmed. The sequence has a well-conserved WRW motif. The exact function of the protein is not known.
Probab=99.97 E-value=7.7e-32 Score=183.23 Aligned_cols=72 Identities=31% Similarity=0.546 Sum_probs=67.9
Q ss_pred HHhhcCcccccccccc-CCCCHHHHHHHHHhHHHHHHHhhhc--cCCccHHHHHHHHHHHHHHhhcchhHhHHHHHHHh
Q 034630 8 NEVKGMKVKELPNYLK-PMFSMNYVKQTVQRGLDNYHAKYIQ--TSSFDPVYHVCIGGMIFSYLVALPEERRHLEHQQH 83 (89)
Q Consensus 8 ~~l~~vKl~ElP~wl~-~~~sp~~i~~a~~r~~~rY~~KYi~--~gs~aPl~hvl~g~~lfsY~i~y~~ey~HlkH~~~ 83 (89)
.+|+||||+|||+|++ ||+||.++.++++|++|||++|||+ |+||+|++||++|+|+|+|++||. |+||||+
T Consensus 29 t~l~dVKLgELpsW~~rRd~sP~~~~~a~sR~~wry~~KYi~~Kr~gia~~~~v~~g~~~~~Y~~~Y~----~lkh~r~ 103 (104)
T PF10206_consen 29 TPLMDVKLGELPSWLSRRDKSPSGIAGAFSRGYWRYQHKYINVKRGGIAPFFQVLAGYMVFSYCINYK----HLKHHRN 103 (104)
T ss_pred CchhheecchhHHHHhhccCCHHHHHHHHHHHHHHHHHhhhceecCCcchhHHHHHHHHHHHHHHhhc----HhhhccC
Confidence 3699999999999999 7799999999999999999999999 999999999999999999996555 9999986
No 2
>KOG4092 consensus Mitochondrial F1F0-ATP synthase, subunit f [Energy production and conversion]
Probab=99.96 E-value=1.9e-29 Score=170.83 Aligned_cols=76 Identities=29% Similarity=0.449 Sum_probs=71.3
Q ss_pred HHhhcCcccccccccc-CCCCHHHHHHHHHhHHHHHHHhhhc---cCCccHHHHHHHHHHHHHHhhcchhHhHHHHHHHh
Q 034630 8 NEVKGMKVKELPNYLK-PMFSMNYVKQTVQRGLDNYHAKYIQ---TSSFDPVYHVCIGGMIFSYLVALPEERRHLEHQQH 83 (89)
Q Consensus 8 ~~l~~vKl~ElP~wl~-~~~sp~~i~~a~~r~~~rY~~KYi~---~gs~aPl~hvl~g~~lfsY~i~y~~ey~HlkH~~~ 83 (89)
..++||||||||+|+. |++||++|.++++|++|||++|||+ +|||+||+|+++++++|+|+++|. |+||||.
T Consensus 29 ~kf~~VKLGelpaW~~rR~ktPsa~~gaf~R~~wR~~nkY~~Pv~~gsi~~if~~~~ay~~f~yl~~y~----~lkh~r~ 104 (108)
T KOG4092|consen 29 KKFLEVKLGELPAWILRRDKTPSAIFGAFQRGYWRYYNKYINPVKKGSISGIFMVLAAYVLFSYLFSYK----HLKHERL 104 (108)
T ss_pred ceeeeeeecccHHHHHhccCChHHHHHHHHHHHHHHHhheechhhcCchhHHHHHHHHHHHHHHHHHHH----HHHHhhh
Confidence 3589999999999999 6699999999999999999999999 999999999999999999996555 9999999
Q ss_pred hHhh
Q 034630 84 AKEH 87 (89)
Q Consensus 84 ~k~~ 87 (89)
+|+|
T Consensus 105 ~kYH 108 (108)
T KOG4092|consen 105 RKYH 108 (108)
T ss_pred hccC
Confidence 9986
No 3
>PF10791 F1F0-ATPsyn_F: Mitochondrial F1-F0 ATP synthase subunit F of fungi; InterPro: IPR019727 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit F found in the F0 complex of F-ATPases from fungal mitochondria. The membrane bound F1-FO-type H+ ATP synthase of mitochondria catalyses the terminal step in oxidative respiration converting the generation of the electrochemical gradient into ATP for cellular biosynthesis. The general structure and the core subunits of the enzyme are highly conserved in both prokaryotic and eukaryotic organisms.
Probab=99.23 E-value=7.5e-12 Score=84.18 Aligned_cols=39 Identities=31% Similarity=0.473 Sum_probs=36.8
Q ss_pred HHHHHHHhhhc--cCCccHHHHHHHHHHHHHHhhcchhHhHHHH
Q 034630 38 GLDNYHAKYIQ--TSSFDPVYHVCIGGMIFSYLVALPEERRHLE 79 (89)
Q Consensus 38 ~~~rY~~KYi~--~gs~aPl~hvl~g~~lfsY~i~y~~ey~Hlk 79 (89)
.+.||++||+| |+|.+||+|+++|+++|+|++||+ +|||
T Consensus 55 ~~grYkakYFdGkNaSgkPllHli~~l~~iGYs~eYy---fHLr 95 (95)
T PF10791_consen 55 LLGRYKAKYFDGKNASGKPLLHLIGGLFLIGYSIEYY---FHLR 95 (95)
T ss_pred hHHHHHHHHcCCCCCccccHHHHHHHHHHHHHHHHhH---hhcC
Confidence 37899999997 999999999999999999999999 9986
No 4
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=74.28 E-value=4.2 Score=26.21 Aligned_cols=62 Identities=19% Similarity=0.173 Sum_probs=39.7
Q ss_pred HHHhhcCccccccccccCCCCHH---HHHHHHHhHHHHH-HHhhhc---cCCccHHHHHHHHHHHHHHhh
Q 034630 7 YNEVKGMKVKELPNYLKPMFSMN---YVKQTVQRGLDNY-HAKYIQ---TSSFDPVYHVCIGGMIFSYLV 69 (89)
Q Consensus 7 ~~~l~~vKl~ElP~wl~~~~sp~---~i~~a~~r~~~rY-~~KYi~---~gs~aPl~hvl~g~~lfsY~i 69 (89)
++.+.+++= |.=+.+.+..||+ .+...+++-.+.- -.-.++ ..|...|.++++..+++||.+
T Consensus 4 ~~yi~~l~p-e~~~~l~~~~s~ev~e~m~~~v~~llG~l~p~~~~~~~i~~s~~~La~L~~~~mm~GYfL 72 (86)
T PF05542_consen 4 LQYIQSLKP-ERIQQLSEPASPEVLEAMKQHVSGLLGNLSPSDQFNVTIQTSRENLAQLLAWSMMTGYFL 72 (86)
T ss_pred HHHHHHCCH-HHHHHhhccCCHHHHHHHHHHHHHHHcCCCCcccCcceeEECHHHHHHHHHHHHHHhHHH
Confidence 344444444 4445555666765 4444444444444 333444 788899999999999999996
No 5
>PF10847 DUF2656: Protein of unknown function (DUF2656); InterPro: IPR020325 This entry contains uncharacterised proteins from the cpeY 3'-region. They have no known function, but are found in the phycobilisome.
Probab=48.29 E-value=39 Score=24.11 Aligned_cols=53 Identities=15% Similarity=0.254 Sum_probs=37.9
Q ss_pred HHHhhcCccccc---ccccc---CCCCHHHHHHHHHhHHHHHHHhhhccCCccHHHHHHHH
Q 034630 7 YNEVKGMKVKEL---PNYLK---PMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIG 61 (89)
Q Consensus 7 ~~~l~~vKl~El---P~wl~---~~~sp~~i~~a~~r~~~rY~~KYi~~gs~aPl~hvl~g 61 (89)
+..-..++=.|+ |-|+. .++||+.+...+-+++.+|++.- ..+..|-+.++.|
T Consensus 28 l~~~~~i~~~~~l~hPHW~v~i~s~lsp~~~~~~~v~aw~~~R~~~--g~~~~h~ilaLGG 86 (132)
T PF10847_consen 28 LSHSSSIKCREALNHPHWMVEIESDLSPDEMAEELVRAWKQYRNSL--GHSMNHDILALGG 86 (132)
T ss_pred HhcCCCceecccccCCceEEEecccCCHHHHHHHHHHHHHHHHHhh--cCCccchhhhhcc
Confidence 333344544555 88987 45999999999999999888765 6666666666554
No 6
>PF06055 ExoD: Exopolysaccharide synthesis, ExoD; InterPro: IPR010331 Among the bacterial genes required for nodule invasion are the exo genes. These genes are involved in the production of an extracellular polysaccharide. Mutations in the exoD result in altered exopolysaccharide production and defects in nodule invasion [].
Probab=47.14 E-value=54 Score=23.94 Aligned_cols=32 Identities=19% Similarity=0.329 Sum_probs=24.2
Q ss_pred ccccccc-CCCCHHHHHHHHHh--HHHHHHHhhhc
Q 034630 17 ELPNYLK-PMFSMNYVKQTVQR--GLDNYHAKYIQ 48 (89)
Q Consensus 17 ElP~wl~-~~~sp~~i~~a~~r--~~~rY~~KYi~ 48 (89)
=||.|+. |.++.+.+.+.+.+ .+-+|-+++..
T Consensus 77 WLP~~l~~r~i~~~~l~~~~~~~~p~~~~ler~~r 111 (187)
T PF06055_consen 77 WLPKFLRRRSISREKLRKAVRRLRPWLRRLERLLR 111 (187)
T ss_pred CCChHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4899999 55998888887774 44577777775
No 7
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=46.70 E-value=25 Score=22.49 Aligned_cols=22 Identities=18% Similarity=0.454 Sum_probs=16.2
Q ss_pred HHHHhhcchhHhHHHHHHHhhHhhC
Q 034630 64 IFSYLVALPEERRHLEHQQHAKEHG 88 (89)
Q Consensus 64 lfsY~i~y~~ey~HlkH~~~~k~~~ 88 (89)
++.|++|++ +-.|.+|+.+..|
T Consensus 46 ~lt~ltN~Y---FK~k~drr~~a~g 67 (68)
T PF04971_consen 46 LLTYLTNLY---FKIKEDRRKAARG 67 (68)
T ss_pred HHHHHhHhh---hhhhHhhhHhhcC
Confidence 567888887 7777777766554
No 8
>COG4331 Predicted membrane protein [Function unknown]
Probab=45.71 E-value=42 Score=24.73 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=30.9
Q ss_pred hhhccCCccHHHHHHHHHHHHHHhhcchhHhHHHHHHHhhH
Q 034630 45 KYIQTSSFDPVYHVCIGGMIFSYLVALPEERRHLEHQQHAK 85 (89)
Q Consensus 45 KYi~~gs~aPl~hvl~g~~lfsY~i~y~~ey~HlkH~~~~k 85 (89)
+|.+++|+.-++-.++-++++--+. -|||-+|||.++.
T Consensus 126 r~~~t~Si~livlti~Dv~viiLtl---lEYR~lk~H~~k~ 163 (167)
T COG4331 126 RFFNTGSISLIVLTIFDVFVIILTL---LEYRLLKAHISKE 163 (167)
T ss_pred HHHhcccHHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhh
Confidence 4556999998888888888877765 7999999998765
No 9
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=44.85 E-value=15 Score=27.19 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.8
Q ss_pred ccccccccCCCCHHHHHHHHHhHHHH
Q 034630 16 KELPNYLKPMFSMNYVKQTVQRGLDN 41 (89)
Q Consensus 16 ~ElP~wl~~~~sp~~i~~a~~r~~~r 41 (89)
|.+|+|+.....|.+|++=+..++++
T Consensus 180 G~IP~wl~n~~~p~aI~~Dv~~fl~W 205 (208)
T cd08864 180 GNIPRWLTKLTIPKAIAKDVPLFLDW 205 (208)
T ss_pred CcCcHHHHhccCchHHHHhHHHHHHH
Confidence 57999999999999999877776654
No 10
>PF14261 DUF4351: Domain of unknown function (DUF4351)
Probab=37.27 E-value=33 Score=20.70 Aligned_cols=26 Identities=19% Similarity=0.316 Sum_probs=20.0
Q ss_pred HHHHHHhhcCccccccccccCC---CCHH
Q 034630 4 RRIYNEVKGMKVKELPNYLKPM---FSMN 29 (89)
Q Consensus 4 ~~~~~~l~~vKl~ElP~wl~~~---~sp~ 29 (89)
++.+-++..-|+|++|.++..+ +|.+
T Consensus 9 ~~lllRlL~rrFG~lp~~~~~~I~~l~~e 37 (59)
T PF14261_consen 9 ARLLLRLLTRRFGELPPEIQERIQQLSLE 37 (59)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHcCCHH
Confidence 5677788889999999998733 5544
No 11
>PF14898 DUF4491: Domain of unknown function (DUF4491)
Probab=35.56 E-value=95 Score=20.97 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhcchhHhHHHHHHHhhHhhCC
Q 034630 56 YHVCIGGMIFSYLVALPEERRHLEHQQHAKEHGH 89 (89)
Q Consensus 56 ~hvl~g~~lfsY~i~y~~ey~HlkH~~~~k~~~~ 89 (89)
.-.+.|++.+|-. |+...+..++.|-++|.
T Consensus 57 ~S~llgv~g~s~l----WsI~ElfeQ~kRV~kGW 86 (94)
T PF14898_consen 57 WSALLGVLGFSCL----WSIGELFEQEKRVEKGW 86 (94)
T ss_pred HHHHHHHHHHHHH----HhHHHHHHHHHHHHcCC
Confidence 3556778888877 99999999999998874
No 12
>PF04699 P16-Arc: ARP2/3 complex 16 kDa subunit (p16-Arc); InterPro: IPR006789 The Arp2/3 protein complex has been implicated in the control of actin polymerisation. The human complex consists of seven subunits which include the actin related proteins Arp2 and Arp3, and five others referred to as p41-Arc, p34-Arc, p21-Arc, p20-Arc, and p16-Arc. The precise function of p16-Arc is currently unknown. Its structure consists of a single domain containing a bundle of seven alpha helices [, ].; GO: 0030833 regulation of actin filament polymerization, 0005856 cytoskeleton; PDB: 3DWL_G 1TYQ_G 1U2V_G 2P9U_G 2P9L_G 1K8K_G 3DXM_G 2P9N_G 3DXK_G 2P9I_G ....
Probab=32.55 E-value=51 Score=23.66 Aligned_cols=58 Identities=16% Similarity=0.348 Sum_probs=41.6
Q ss_pred cHHHHHHHhhcCccccccccccCCCCHH-------HHHHHHH--------hHHHHHHHhhhccCCccHHHHHHH
Q 034630 2 SLRRIYNEVKGMKVKELPNYLKPMFSMN-------YVKQTVQ--------RGLDNYHAKYIQTSSFDPVYHVCI 60 (89)
Q Consensus 2 ~~~~~~~~l~~vKl~ElP~wl~~~~sp~-------~i~~a~~--------r~~~rY~~KYi~~gs~aPl~hvl~ 60 (89)
++..+++-|..+|-.|+++-++ .++++ .|-+++. .-+=.|++|-++.+|..+|+.||.
T Consensus 75 ~~~~Vl~vL~s~k~sdI~~~v~-~L~~~~~D~LMKYiYkg~~~~~~~s~~~~LL~WheK~~~~~G~G~IvRvlt 147 (152)
T PF04699_consen 75 ALQLVLEVLTSIKSSDIENAVK-SLDSDQQDILMKYIYKGMESPSENSSGGVLLSWHEKLVEVAGVGSIVRVLT 147 (152)
T ss_dssp HHHHHHHHHHCS-GGGHHHHHC-CS-HHHHHHHHHHHHHHTTS--TTHH-CHHHHHHHHHHHCCHCHHHHHHCC
T ss_pred HHHHHHHHHHHccHHHHHHHHH-hCCHHHHhHHHHHHHHhccCccCccHHHHHHHHHHHHHHHcCCCcEEEEee
Confidence 4677889999999999998775 33443 3444443 235579999999999999998863
No 13
>PF00730 HhH-GPD: HhH-GPD superfamily base excision DNA repair protein This entry corresponds to Endonuclease III This entry corresponds to Alkylbase DNA glycosidase; InterPro: IPR003265 Endonuclease III (4.2.99.18 from EC) is a DNA repair enzyme which removes a number of damaged pyrimidines from DNA via its glycosylase activity and also cleaves the phosphodiester backbone at apurinic / apyrimidinic sites via a beta-elimination mechanism [, ]. The structurally related DNA glycosylase MutY recognises and excises the mutational intermediate 8-oxoguanine-adenine mispair []. The 3-D structures of Escherichia coli endonuclease III [] and catalytic domain of MutY [] have been determined. The structures contain two all-alpha domains: a sequence-continuous, six-helix domain (residues 22-132) and a Greek-key, four-helix domain formed by one N-terminal and three C-terminal helices (residues 1-21 and 133-211) together with the [Fe4S4] cluster. The cluster is bound entirely within the C-terminal loop by four cysteine residues with a ligation pattern Cys-(Xaa)6-Cys-(Xaa)2-Cys-(Xaa)5-Cys which is distinct from all other known Fe4S4 proteins. This structural motif is referred to as a [Fe4S4] cluster loop (FCL) []. Two DNA-binding motifs have been proposed, one at either end of the interdomain groove: the helix-hairpin-helix (HhH) and FCL motifs (see IPR003651 from INTERPRO). The primary role of the iron-sulphur cluster appears to involve positioning conserved basic residues for interaction with the DNA phosphate backbone by forming the loop of the FCL motif [, ]. The HhH-GPD domain gets its name from its hallmark helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate. This domain is found in a diverse range of structurally related DNA repair proteins that include: endonuclease III, 4.2.99.18 from EC and DNA glycosylase MutY, an A/G-specific adenine glycosylase. Both of these enzymes have a C-terminal iron-sulphur cluster loop (FCL). The methyl-CPG binding protein (MBD4) also contain a related domain that is a thymine DNA glycosylase. The family also includes DNA-3-methyladenine glycosylase II 3.2.2.21 from EC, 8-oxoguanine DNA glycosylases and other members of the AlkA family.; GO: 0006284 base-excision repair; PDB: 3F0Z_A 3I0X_A 3F10_A 3I0W_A 3S6I_D 3N5N_Y 1PU7_A 1PU8_B 1PU6_B 1NGN_A ....
Probab=30.38 E-value=36 Score=21.44 Aligned_cols=39 Identities=23% Similarity=0.391 Sum_probs=26.9
Q ss_pred HHHHHHhhcCcccccccccc-CCCCHHHHHHHHH-hHHHHHHHhhhc
Q 034630 4 RRIYNEVKGMKVKELPNYLK-PMFSMNYVKQTVQ-RGLDNYHAKYIQ 48 (89)
Q Consensus 4 ~~~~~~l~~vKl~ElP~wl~-~~~sp~~i~~a~~-r~~~rY~~KYi~ 48 (89)
.+|...++ .|++=. ...+++.+.+.++ -|+.+++.+||.
T Consensus 19 ~~l~~~~g------~pt~~~l~~~~~~el~~~i~~~G~~~~ka~~i~ 59 (108)
T PF00730_consen 19 RRLFERYG------FPTPEALAEASEEELRELIRPLGFSRRKAKYII 59 (108)
T ss_dssp HHHHHHHS------CSSHHHHHCSHHHHHHHHHTTSTSHHHHHHHHH
T ss_pred HHHHHHhc------CCCHHHHHhCCHHHHHHHhhccCCCHHHHHHHH
Confidence 44555555 566666 5677777777766 478889999985
No 14
>COG2862 Predicted membrane protein [Function unknown]
Probab=27.90 E-value=2.5e+02 Score=20.69 Aligned_cols=23 Identities=13% Similarity=0.222 Sum_probs=19.2
Q ss_pred HHHHHHhhcCcccccccccc-CCCC
Q 034630 4 RRIYNEVKGMKVKELPNYLK-PMFS 27 (89)
Q Consensus 4 ~~~~~~l~~vKl~ElP~wl~-~~~s 27 (89)
..|.++|...+ .+.|+|+. .|++
T Consensus 82 elFVskLd~~~-~~~~~wL~~~d~~ 105 (169)
T COG2862 82 ELFVSKLDIAE-EDKPSWLGIVDLS 105 (169)
T ss_pred HHHHhhccccc-ccccchhhcccHH
Confidence 45888998888 89999999 6666
No 15
>PF02397 Bac_transf: Bacterial sugar transferase; InterPro: IPR003362 This entry represents a conserved region from a number of different bacterial sugar transferases, involved in diverse biosynthesis pathways. Examples include galactosyl-P-P-undecaprenol synthetase (2.7.8.6 from EC), which transfers galatose-1-phosphate to the lipid precursor undecaprenol phosphate in the first steps of O-polysaccharide biosynthesis; UDP-galactose-lipid carrier transferase, which is involved in the biosynthesis of amylovoran; and galactosyl transferase CpsD, which is essential for assembly of the group B Streptococci (GBS) type III capsular polysaccharide.
Probab=27.50 E-value=65 Score=23.63 Aligned_cols=50 Identities=12% Similarity=0.214 Sum_probs=32.2
Q ss_pred hhcCccccccc----------cccCCCCHHHHHHHHHhHHHHHHHhhhc-cCCccHHHHHH
Q 034630 10 VKGMKVKELPN----------YLKPMFSMNYVKQTVQRGLDNYHAKYIQ-TSSFDPVYHVC 59 (89)
Q Consensus 10 l~~vKl~ElP~----------wl~~~~sp~~i~~a~~r~~~rY~~KYi~-~gs~aPl~hvl 59 (89)
|...+|-|||. .++++.-+.......+.-..+|..+... +.|+.++.|+-
T Consensus 83 LRkt~LDELPQl~NVL~GdMSlVGPRP~~~~~~~~~~~~~~~~~~r~~~vkPGiTG~aQv~ 143 (187)
T PF02397_consen 83 LRKTSLDELPQLWNVLKGDMSLVGPRPEVPEEVELYSEYIPEYRRRRLSVKPGITGLAQVN 143 (187)
T ss_pred eEeechhhChHHHHHHhCceeeecCCCCCchHHHHHHHhHHHHHHhcCccCCCCCchhhhc
Confidence 34567788884 5565522223444444444577777566 99999999987
No 16
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=26.02 E-value=92 Score=17.81 Aligned_cols=28 Identities=11% Similarity=0.227 Sum_probs=20.6
Q ss_pred HHHHHHHhhhccCCccHHHHHHHHHHHHHHhh
Q 034630 38 GLDNYHAKYIQTSSFDPVYHVCIGGMIFSYLV 69 (89)
Q Consensus 38 ~~~rY~~KYi~~gs~aPl~hvl~g~~lfsY~i 69 (89)
+..+|-.+.| +=.|+|+++-..+++|++
T Consensus 8 ai~aYEr~Wi----~F~l~mi~vFi~li~ytl 35 (38)
T PF09125_consen 8 AIEAYERGWI----AFALAMILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHH----HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhHH----HHHHHHHHHHHHHHHHHH
Confidence 4456666665 346889999999999985
No 17
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=25.97 E-value=31 Score=18.35 Aligned_cols=12 Identities=25% Similarity=0.617 Sum_probs=8.4
Q ss_pred HHHHHHHhhcCc
Q 034630 3 LRRIYNEVKGMK 14 (89)
Q Consensus 3 ~~~~~~~l~~vK 14 (89)
+..||++|.++|
T Consensus 9 f~eFY~rlk~Ik 20 (28)
T PF12108_consen 9 FSEFYERLKEIK 20 (28)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 457888887765
No 18
>TIGR01947 rnfG electron transport complex, RnfABCDGE type, G subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=25.64 E-value=1e+02 Score=22.21 Aligned_cols=41 Identities=12% Similarity=0.273 Sum_probs=29.6
Q ss_pred HHHHHHHhhcCcccc--------------ccccccCCCCHHHHHHHHHhHHHHHH
Q 034630 3 LRRIYNEVKGMKVKE--------------LPNYLKPMFSMNYVKQTVQRGLDNYH 43 (89)
Q Consensus 3 ~~~~~~~l~~vKl~E--------------lP~wl~~~~sp~~i~~a~~r~~~rY~ 43 (89)
...|+.++.+.++.+ +.+-=+...|++++..++.+++.-|+
T Consensus 131 ~~~f~~qf~gk~~~~~~~~~~~~~k~~~~iDaISGATiTS~av~~av~~al~~~~ 185 (186)
T TIGR01947 131 ISEWIEGFAGKSLADPDDDHWAVKKDGGQFDQFTGATITPRAVVNAVKRALRYFK 185 (186)
T ss_pred cHhHHhhCCCCccCCCcccceeeccCCCccceEeeccccHHHHHHHHHHHHHHHh
Confidence 357888888877643 33333377899999999999987664
No 19
>PF08730 Rad33: Rad33; InterPro: IPR014841 Rad33 is involved in nucleotide excision repair (NER). NER is the main pathway for repairing DNA lesions induced by UV. Cells deleted for RAD33 display intermediate UV sensitivity that is epistatic with NER [].
Probab=22.58 E-value=84 Score=23.30 Aligned_cols=57 Identities=23% Similarity=0.417 Sum_probs=34.4
Q ss_pred hcCccccccccccCCCCHHHHHHHHHhHHHHHHHhhhc--cCCccHH--HHHHHHHHHHHHh
Q 034630 11 KGMKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQ--TSSFDPV--YHVCIGGMIFSYL 68 (89)
Q Consensus 11 ~~vKl~ElP~wl~~~~sp~~i~~a~~r~~~rY~~KYi~--~gs~aPl--~hvl~g~~lfsY~ 68 (89)
.||.|.+||+.+..=-=|+-+..-+....+.|| +++. .-.+.|. -|-++--|+.+|+
T Consensus 28 ~D~~l~~Lp~~f~~L~IP~cfT~DI~~cidyyY-~~i~~~~~~i~~tn~kq~it~~mi~a~t 88 (170)
T PF08730_consen 28 QDMTLKDLPNYFEDLQIPKCFTKDINECIDYYY-KFIRSKDVCIEGTNPKQDITLQMIHAYT 88 (170)
T ss_pred cceeHHHHHHHHHHcCCChHHHHhHHHHHHHHH-HhcccCceeecCcchhHHHHHHHHHHhh
Confidence 379999999999843225556666666667676 6775 3334443 3444444444444
No 20
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=21.86 E-value=46 Score=25.89 Aligned_cols=9 Identities=44% Similarity=0.796 Sum_probs=7.3
Q ss_pred hHHHHHHHh
Q 034630 75 RRHLEHQQH 83 (89)
Q Consensus 75 y~HlkH~~~ 83 (89)
-||||||-+
T Consensus 134 LRhLRHHSN 142 (238)
T PF02084_consen 134 LRHLRHHSN 142 (238)
T ss_pred HHHHHHHHH
Confidence 389999965
No 21
>PF09782 NDUF_B6: NADH:ubiquinone oxidoreductase, NDUFB6/B17 subunit; InterPro: IPR019174 The NADH dehydrogenase [ubiquinone] complex performs the first stage of electron transfer from NADH to the respiratory chain. This entry represents an accessory subunit that is not thought to be involved in catalysis [].
Probab=21.80 E-value=1.1e+02 Score=22.15 Aligned_cols=24 Identities=17% Similarity=0.113 Sum_probs=16.6
Q ss_pred cCCccHHHHHHHHHHHHHHhhcch
Q 034630 49 TSSFDPVYHVCIGGMIFSYLVALP 72 (89)
Q Consensus 49 ~gs~aPl~hvl~g~~lfsY~i~y~ 72 (89)
+.++.-+++++++.-++-|.+-|.
T Consensus 86 R~~i~k~~~~li~~w~~~Yy~KYn 109 (156)
T PF09782_consen 86 RHGIFKFTMVLIPAWIIHYYFKYN 109 (156)
T ss_pred eehHHHHHHHHHHHHHHHHHHhhc
Confidence 677777777777777777765444
No 22
>PF13789 DUF4181: Domain of unknown function (DUF4181)
Probab=21.51 E-value=1.6e+02 Score=19.41 Aligned_cols=30 Identities=13% Similarity=0.091 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHhhcchhHhHHHHHHHhhHhh
Q 034630 55 VYHVCIGGMIFSYLVALPEERRHLEHQQHAKEH 87 (89)
Q Consensus 55 l~hvl~g~~lfsY~i~y~~ey~HlkH~~~~k~~ 87 (89)
..-++.+.+++.++. +.+..-|++|+.|++
T Consensus 60 ~~~~~~~f~~~~~~~---ra~mEWKy~resK~y 89 (110)
T PF13789_consen 60 PYILIFLFLIILFCF---RAFMEWKYDRESKEY 89 (110)
T ss_pred HHHHHHHHHHHHHHH---HHHHHHHhcccchhh
Confidence 344555555556665 777888888888875
No 23
>PF08673 RsbU_N: Phosphoserine phosphatase RsbU, N-terminal domain; InterPro: IPR014787 The phosphoserine phosphatase RsbU acts as a positive regulator of the general stress-response factor of Gram-positive organisms, sigma-B. RsbU dephosphorylates rsbV in response to environmental stress conveyed from the rsbXST module. The phosphatase activity of RsbU is stimulated during the stress response by associating with the RsbT kinase. This association leads to the induction of sigmaB activity. The N-terminal domain forms a helix-swapped dimer that is otherwise similar to the KaiA domain dimer. Deletions in the N-terminal domain are deleterious to the activity of RsbU. The C-terminal domain of RsbU is similar to the catalytic domains of PP2C-type phosphatases [].; PDB: 2J6Y_D 2J6Z_A 2J70_A 1W53_A.
Probab=21.40 E-value=49 Score=21.13 Aligned_cols=48 Identities=17% Similarity=0.144 Sum_probs=30.6
Q ss_pred ccccccccc-CCCCHHHHHHHHHhHHHHHHHhhh-c-cCCccHHHHHHHHH
Q 034630 15 VKELPNYLK-PMFSMNYVKQTVQRGLDNYHAKYI-Q-TSSFDPVYHVCIGG 62 (89)
Q Consensus 15 l~ElP~wl~-~~~sp~~i~~a~~r~~~rY~~KYi-~-~gs~aPl~hvl~g~ 62 (89)
--|+..++. .+.+|++|..-=.+.........- + ..|..+|..||.|+
T Consensus 23 ~~~~~r~~i~~~I~PEeIv~iH~~~v~~l~~~~~~~v~~sld~LlEvm~~y 73 (77)
T PF08673_consen 23 AQEFGRELIEKDISPEEIVEIHKSAVQELSPSLPEDVLDSLDFLLEVMIGY 73 (77)
T ss_dssp HHHHHHHHHHTT--HHHHHHHHHHHHHHH-TTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHc
Confidence 345566666 779999998877766666654422 2 66778888888775
No 24
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=21.39 E-value=1.4e+02 Score=21.23 Aligned_cols=35 Identities=9% Similarity=0.130 Sum_probs=25.2
Q ss_pred CCccHHHHHHHHHHHHHHh-hcchhHhHHHHHHHhhHhh
Q 034630 50 SSFDPVYHVCIGGMIFSYL-VALPEERRHLEHQQHAKEH 87 (89)
Q Consensus 50 gs~aPl~hvl~g~~lfsY~-i~y~~ey~HlkH~~~~k~~ 87 (89)
-++-+++-+..|+|++.-. +.|- -++|..|.++++
T Consensus 80 ~~~~G~vlLs~GLmlL~~~alcW~---~~~rkK~~kr~e 115 (129)
T PF15099_consen 80 ISIFGPVLLSLGLMLLACSALCWK---PIIRKKKKKRRE 115 (129)
T ss_pred hhhehHHHHHHHHHHHHhhhheeh---hhhHhHHHHhhh
Confidence 3566888889999988877 8887 666665555443
No 25
>PF08653 DASH_Dam1: DASH complex subunit Dam1; InterPro: IPR013962 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ]. Components of the DASH complex, including Dam1, Duo1, Spc34, Dad1 and Ask1, are essential and connect the centromere to the plus end of spindle microtubules [].
Probab=21.26 E-value=1.1e+02 Score=18.73 Aligned_cols=18 Identities=17% Similarity=0.213 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHhhcch
Q 034630 55 VYHVCIGGMIFSYLVALP 72 (89)
Q Consensus 55 l~hvl~g~~lfsY~i~y~ 72 (89)
+...+.|+..-+||++||
T Consensus 38 FasfLYGl~mna~cvdfp 55 (58)
T PF08653_consen 38 FASFLYGLNMNAWCVDFP 55 (58)
T ss_pred HHHHHHHHHHHHHHhcCC
Confidence 345688999999999998
No 26
>PF11274 DUF3074: Protein of unknown function (DUF3074)
Probab=21.24 E-value=60 Score=23.57 Aligned_cols=25 Identities=20% Similarity=0.370 Sum_probs=20.4
Q ss_pred ccccccccCCCCHHHHHHHHHhHHH
Q 034630 16 KELPNYLKPMFSMNYVKQTVQRGLD 40 (89)
Q Consensus 16 ~ElP~wl~~~~sp~~i~~a~~r~~~ 40 (89)
|-+|.|+.+.-.|.+|++-+..+++
T Consensus 158 G~IP~w~q~~~~p~~Ia~DV~~fl~ 182 (184)
T PF11274_consen 158 GSIPRWMQEMGTPGAIAKDVPKFLD 182 (184)
T ss_pred CcccHHHHhccCcHHHHHHHHHHhc
Confidence 5689999999889999887776654
No 27
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=21.20 E-value=2.5e+02 Score=18.30 Aligned_cols=47 Identities=13% Similarity=0.154 Sum_probs=29.3
Q ss_pred cccccccCCCCHHHHHHHHHhHHHHHHHhhhccCCccHHHHHHHHHHH
Q 034630 17 ELPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIGGMI 64 (89)
Q Consensus 17 ElP~wl~~~~sp~~i~~a~~r~~~rY~~KYi~~gs~aPl~hvl~g~~l 64 (89)
++|+-+....||+.....+.+--......|. +.+..-+...++|.+.
T Consensus 21 ~~P~~L~~~is~~ef~~iI~~IN~~l~~a~~-~~~~~~~~~~~l~~lt 67 (118)
T PF10256_consen 21 EYPGELSGYISPEEFEEIINTINQILKEAFE-PISWRNIIENILGCLT 67 (118)
T ss_pred cCCHhhcCCCCHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHHHHHH
Confidence 7888898889999888887776444443332 3344444444444443
No 28
>PF05232 BTP: Bacterial Transmembrane Pair family; InterPro: IPR007896 This domain represents a conserved pair of transmembrane helices. It appears to be found as two tandem repeats in a family of hypothetical proteins.
Probab=21.09 E-value=1.3e+02 Score=18.54 Aligned_cols=30 Identities=7% Similarity=-0.109 Sum_probs=23.9
Q ss_pred CccHHHHHHHHHHHHHHhhcchhHhHHHHH
Q 034630 51 SFDPVYHVCIGGMIFSYLVALPEERRHLEH 80 (89)
Q Consensus 51 s~aPl~hvl~g~~lfsY~i~y~~ey~HlkH 80 (89)
.-+..+.+...++.+.|..-|++-+++...
T Consensus 34 ~~a~~l~v~~s~~a~~wn~ifN~~FD~~~~ 63 (67)
T PF05232_consen 34 WQAGALDVGLSLFAMVWNYIFNWLFDKIEP 63 (67)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 445677778888888888888899999887
No 29
>COG2154 Pterin-4a-carbinolamine dehydratase [Coenzyme metabolism]
Probab=20.91 E-value=29 Score=23.52 Aligned_cols=23 Identities=17% Similarity=0.294 Sum_probs=18.8
Q ss_pred CcHHHHHHHhhcCcccccccccc
Q 034630 1 MSLRRIYNEVKGMKVKELPNYLK 23 (89)
Q Consensus 1 ~~~~~~~~~l~~vKl~ElP~wl~ 23 (89)
|.+..+-.+-.+..|.+||+|..
T Consensus 1 ~~~~~lt~~~~~~~l~~l~gW~l 23 (101)
T COG2154 1 MRASKLTDEELAELLRALPGWEL 23 (101)
T ss_pred CCccccCHHHHHHHhcCCCCCEE
Confidence 45666777778889999999987
No 30
>smart00831 Cation_ATPase_N Cation transporter/ATPase, N-terminus. This entry represents the conserved N-terminal region found in several classes of cation-transporting P-type ATPases, including those that transport H+, Na+, Ca2+, Na+/K+, and H+/K+. In the H+/K+- and Na+/K+-exchange P-ATPases, this domain is found in the catalytic alpha chain. In gastric H+/K+-ATPases, this domain undergoes reversible sequential phosphorylation inducing conformational changes that may be important for regulating the function of these ATPases PUBMED:12480547, PUBMED:12529322.
Probab=20.37 E-value=1.3e+02 Score=17.22 Aligned_cols=18 Identities=17% Similarity=0.460 Sum_probs=14.6
Q ss_pred cHHHHHHHHHHHHHHhhc
Q 034630 53 DPVYHVCIGGMIFSYLVA 70 (89)
Q Consensus 53 aPl~hvl~g~~lfsY~i~ 70 (89)
.|+.-++.+..++|+++.
T Consensus 46 ~p~~~iL~~~a~is~~~~ 63 (64)
T smart00831 46 NPLIYILLAAAVLSALLG 63 (64)
T ss_pred hHHHHHHHHHHHHHHHHc
Confidence 588889988888888753
Done!