Query 034630
Match_columns 89
No_of_seqs 100 out of 118
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 07:33:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034630.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034630hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3kny_A Hypothetical protein BT 40.6 5.6 0.00019 28.9 -0.1 26 6-31 18-43 (218)
2 3dwl_G Actin-related protein 2 25.4 53 0.0018 22.7 2.9 59 2-60 76-147 (152)
3 1k8k_G P16, ARP2/3 complex 16 22.8 45 0.0015 23.1 2.0 58 2-60 75-146 (151)
4 2dt7_A Splicing factor 3A subu 21.3 27 0.00094 18.8 0.6 12 3-14 12-23 (38)
5 4aw6_A CAAX prenyl protease 1 20.0 1.2E+02 0.004 24.2 4.2 31 18-48 316-346 (482)
6 2jwa_A Receptor tyrosine-prote 19.1 48 0.0017 18.5 1.3 11 58-68 25-35 (44)
7 2rnn_A E3 SUMO-protein ligase 15.5 2.3E+02 0.0079 18.6 4.2 57 5-61 32-89 (114)
8 1sg7_A Putative cation transpo 15.3 82 0.0028 20.3 1.9 34 13-47 24-57 (96)
9 2e9x_A DNA replication complex 15.0 1.1E+02 0.0036 20.3 2.5 39 17-55 97-143 (149)
10 1t5q_A Gastric inhibitory poly 14.8 49 0.0017 17.1 0.6 12 1-12 17-28 (30)
No 1
>3kny_A Hypothetical protein BT_3535; structural genomics, joint center for structural genomics, J protein structure initiative; 2.60A {Bacteroides thetaiotaomicron vpi-5482}
Probab=40.60 E-value=5.6 Score=28.91 Aligned_cols=26 Identities=4% Similarity=0.125 Sum_probs=19.3
Q ss_pred HHHHhhcCccccccccccCCCCHHHH
Q 034630 6 IYNEVKGMKVKELPNYLKPMFSMNYV 31 (89)
Q Consensus 6 ~~~~l~~vKl~ElP~wl~~~~sp~~i 31 (89)
|-....=.+|-+||.|++.+.||+..
T Consensus 18 fee~~EFaPLdsVPeWVKeKvT~kEY 43 (218)
T 3kny_A 18 FEENPEYAPLNTIPDWVSEKVTPKEY 43 (218)
T ss_dssp GGGSTTSBCTTCCCGGGGGSSCHHHH
T ss_pred hhcCccccccccchHHHhccCCHHHH
Confidence 33334446899999999999998743
No 2
>3dwl_G Actin-related protein 2/3 complex subunit 5; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=25.41 E-value=53 Score=22.73 Aligned_cols=59 Identities=17% Similarity=0.342 Sum_probs=41.8
Q ss_pred cHHHHHHHhhcCcccccccccc-CCCC-----HHHHHHHHHhH-------HHHHHHhhhccCCccHHHHHHH
Q 034630 2 SLRRIYNEVKGMKVKELPNYLK-PMFS-----MNYVKQTVQRG-------LDNYHAKYIQTSSFDPVYHVCI 60 (89)
Q Consensus 2 ~~~~~~~~l~~vKl~ElP~wl~-~~~s-----p~~i~~a~~r~-------~~rY~~KYi~~gs~aPl~hvl~ 60 (89)
++...++-|..+|=.|+++-++ =+-. .+.|-+++..+ +=.|++|-++.+|..+|+.||.
T Consensus 76 ~~~~Vl~vL~siK~sdI~~~v~~L~~~~~D~LMKYiYkGm~~~~~~~~~~LL~WHEKl~e~~G~G~IvRvlt 147 (152)
T 3dwl_G 76 YLNAFVDVLSNIRAADIPAFVKECSTEEIDNIVNFIYRGLANPQAYNSSVLLNWHEKVVEISGIGCIVRVLN 147 (152)
T ss_dssp HHHHHHHHHHTSCGGGHHHHHHHSCHHHHHHHHHHHHHHTTC----CCSHHHHHHHHHHHTTCSHHHHHHTT
T ss_pred HHHHHHHHHHHccHHHHHHHHHHhCHHHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHcCCCceEEEec
Confidence 4567788888999999888886 2211 12444444433 5589999999999999998863
No 3
>1k8k_G P16, ARP2/3 complex 16 kDa subunit, P16-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: a.118.13.1 PDB: 1tyq_G* 1u2v_G* 2p9i_G* 2p9k_G* 2p9l_G 2p9n_G* 2p9p_G* 2p9s_G* 2p9u_G* 3rse_G 3dxm_G* 3dxk_G
Probab=22.79 E-value=45 Score=23.09 Aligned_cols=58 Identities=12% Similarity=0.230 Sum_probs=40.1
Q ss_pred cHHHHHHHhhcCccccccccccCCCCHH-------HHHHHHH-------hHHHHHHHhhhccCCccHHHHHHH
Q 034630 2 SLRRIYNEVKGMKVKELPNYLKPMFSMN-------YVKQTVQ-------RGLDNYHAKYIQTSSFDPVYHVCI 60 (89)
Q Consensus 2 ~~~~~~~~l~~vKl~ElP~wl~~~~sp~-------~i~~a~~-------r~~~rY~~KYi~~gs~aPl~hvl~ 60 (89)
++..+++=|..+|=.|+++-++ .++++ .|-+++. .-+-.|++|-++.+|..+|+.||.
T Consensus 75 ~~~~Vl~VL~siK~sdI~~~v~-~L~~e~~D~LMKYiYkGm~~~~~~~~~~LL~WHEKl~~~~G~G~IvRvlt 146 (151)
T 1k8k_G 75 AGSIVLKVLISFKANDIEKAVQ-SLDKNGVDLLMKYIYKGFESPSDNSSAVLLQWHEKALAAGGVGSIVRVLT 146 (151)
T ss_dssp HHHHHHHHHHHSCGGGHHHHHH-TSCHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHccHHHHHHHHH-HhChhhhhHHHHHHHHhhcCcCCCcchHHHHHHHHHHHhcCCCcEEEEec
Confidence 3566778888899899888875 23333 3333333 225678899988888888888863
No 4
>2dt7_A Splicing factor 3A subunit 3; structure genomics, SF3A120, SF3A60, SURP domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=21.27 E-value=27 Score=18.77 Aligned_cols=12 Identities=33% Similarity=0.681 Sum_probs=8.5
Q ss_pred HHHHHHHhhcCc
Q 034630 3 LRRIYNEVKGMK 14 (89)
Q Consensus 3 ~~~~~~~l~~vK 14 (89)
+..||++|.++|
T Consensus 12 f~~FY~rlk~Ik 23 (38)
T 2dt7_A 12 FAEFYNRLKQIK 23 (38)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 567888877665
No 5
>4aw6_A CAAX prenyl protease 1 homolog; hydrolase, M48 peptidase, integral membrane protein, prelami processing, ageing, progeria; HET: PC1; 3.40A {Homo sapiens} PDB: 2ypt_A
Probab=19.97 E-value=1.2e+02 Score=24.21 Aligned_cols=31 Identities=10% Similarity=-0.069 Sum_probs=14.1
Q ss_pred ccccccCCCCHHHHHHHHHhHHHHHHHhhhc
Q 034630 18 LPNYLKPMFSMNYVKQTVQRGLDNYHAKYIQ 48 (89)
Q Consensus 18 lP~wl~~~~sp~~i~~a~~r~~~rY~~KYi~ 48 (89)
-|.-.++..|++.+.+.+.--..-++++-+-
T Consensus 316 ~~~~~~~~l~~~El~aVlaHElgH~~~~~~~ 346 (482)
T 4aw6_A 316 KVKNKKQGCKNEEVLAVLGHELGHWKLGHTV 346 (482)
T ss_dssp ------CCCCHHHHHHHHHHHHHHHHTTHHH
T ss_pred cchhhccCCCHHHHHHHHHHHHHHHHcccHH
Confidence 4444555566666666555555555554443
No 6
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=19.08 E-value=48 Score=18.52 Aligned_cols=11 Identities=18% Similarity=0.241 Sum_probs=4.7
Q ss_pred HHHHHHHHHHh
Q 034630 58 VCIGGMIFSYL 68 (89)
Q Consensus 58 vl~g~~lfsY~ 68 (89)
+++++.++-|.
T Consensus 25 vi~~l~~~~~~ 35 (44)
T 2jwa_A 25 VVLGVVFGILI 35 (44)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHhhe
Confidence 33444444444
No 7
>2rnn_A E3 SUMO-protein ligase SIZ1; SUMO ligase, DNA binding, sumoylation, metal-binding, nucLeu phosphoprotein, UBL conjugation pathway; NMR {Saccharomyces cerevisiae}
Probab=15.53 E-value=2.3e+02 Score=18.62 Aligned_cols=57 Identities=18% Similarity=0.196 Sum_probs=36.7
Q ss_pred HHHHHhhcCcccccccccc-CCCCHHHHHHHHHhHHHHHHHhhhccCCccHHHHHHHH
Q 034630 5 RIYNEVKGMKVKELPNYLK-PMFSMNYVKQTVQRGLDNYHAKYIQTSSFDPVYHVCIG 61 (89)
Q Consensus 5 ~~~~~l~~vKl~ElP~wl~-~~~sp~~i~~a~~r~~~rY~~KYi~~gs~aPl~hvl~g 61 (89)
.-...+..+|+-||=.++. ..++..|-+.-+..-...|-.+-.+.|+..|.----+.
T Consensus 32 ~~~~~l~kLtVaELK~~cr~~GL~~sGkKaeLi~RI~~yl~~~~~~g~~D~~rl~ai~ 89 (114)
T 2rnn_A 32 ETITLMELLKVSELKDICRSVSFPVSGRKAVLQDLIRNFLQNALVVGKSDPYRVQAVK 89 (114)
T ss_dssp HHHHHHTTCCHHHHHHHHHHTTCCTTSCHHHHHHHHHHHHHHTTCTTCCCHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHcCCCcCCcHHHHHHHHHHHHHhccccCCCCHHHHHHHH
Confidence 4455688899999999999 55776655555554444554444455567776443333
No 8
>1sg7_A Putative cation transport regulator CHAB; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: a.239.1.1
Probab=15.32 E-value=82 Score=20.33 Aligned_cols=34 Identities=12% Similarity=0.265 Sum_probs=19.9
Q ss_pred CccccccccccCCCCHHHHHHHHHhHHHHHHHhhh
Q 034630 13 MKVKELPNYLKPMFSMNYVKQTVQRGLDNYHAKYI 47 (89)
Q Consensus 13 vKl~ElP~wl~~~~sp~~i~~a~~r~~~rY~~KYi 47 (89)
-++.|||+-+.+.+.. .-...+..+|+...+.|-
T Consensus 24 ~s~~dLP~sVr~~LP~-hAQ~Iy~kAfNsA~eeY~ 57 (96)
T 1sg7_A 24 KTKSDLPESVKHVLPS-HAQDIYKEAFNSAWDQYK 57 (96)
T ss_dssp SSSTTSCHHHHTTCCS-HHHHHHHHHHHHHHHHCC
T ss_pred CChhhCCHHHHHhCCH-HHHHHHHHHHHHHHHHhc
Confidence 4588999999987643 333444444444444443
No 9
>2e9x_A DNA replication complex GINS protein PSF1; eukaryotic DNA replication; HET: DNA; 2.30A {Homo sapiens} SCOP: a.278.1.1 PDB: 2eho_B*
Probab=14.96 E-value=1.1e+02 Score=20.27 Aligned_cols=39 Identities=23% Similarity=0.334 Sum_probs=27.5
Q ss_pred cccccccCCCCHH--HHHHHHHhHHHHHHHhh-----hc-cCCccHH
Q 034630 17 ELPNYLKPMFSMN--YVKQTVQRGLDNYHAKY-----IQ-TSSFDPV 55 (89)
Q Consensus 17 ElP~wl~~~~sp~--~i~~a~~r~~~rY~~KY-----i~-~gs~aPl 55 (89)
.||+-+..++||. ....-.+.....|...+ || ++++.|-
T Consensus 97 ~L~~~~~~~LS~~E~~f~~~Y~~lL~~y~~~~~~~~~ldlt~~l~PP 143 (149)
T 2e9x_A 97 VLPNALRFHMAAEEMEWFNNYKRSLATYMRSLGGDEGLDITQDMKPP 143 (149)
T ss_dssp SCCHHHHHTSCHHHHHHHHHHHHHHHHHHHHSSSSSCCCTTSCCSCC
T ss_pred cCChHHHhcCCHHHHHHHHHHHHHHHHHHHhcCcccccCCCCCCCCC
Confidence 4688888888877 55666667777777654 56 7777763
No 10
>1t5q_A Gastric inhibitory polypeptide; GIP, molecular modelling, helix, diabetes, obesity, hormone/growth factor complex; NMR {Synthetic} SCOP: j.6.1.1
Probab=14.79 E-value=49 Score=17.06 Aligned_cols=12 Identities=8% Similarity=0.044 Sum_probs=6.7
Q ss_pred CcHHHHHHHhhc
Q 034630 1 MSLRRIYNEVKG 12 (89)
Q Consensus 1 ~~~~~~~~~l~~ 12 (89)
||.+.|++.|+.
T Consensus 17 ~~ak~fv~wLl~ 28 (30)
T 1t5q_A 17 IHQQDFVNWLLA 28 (30)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 355566666554
Done!