Query 034630
Match_columns 89
No_of_seqs 100 out of 118
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 07:34:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034630.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/034630hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1k78a1 a.4.1.5 (A:19-81) Pax- 38.3 11 0.0008 21.1 2.5 29 26-54 31-62 (63)
2 d1d02a_ c.52.1.8 (A:) Restrict 30.4 12 0.00085 25.5 1.9 53 3-56 125-185 (197)
3 d1y02a1 a.140.2.1 (A:71-114) R 27.0 6 0.00044 21.1 -0.1 20 8-27 4-24 (44)
4 d1r3jc_ f.14.1.1 (C:) Potassiu 25.7 46 0.0033 18.9 4.0 17 56-72 73-89 (103)
5 d1sg7a1 a.239.1.1 (A:22-96) Pu 19.5 26 0.0019 20.1 1.8 30 14-43 4-36 (75)
6 d1k8kg_ a.118.13.1 (G:) Arp2/3 17.6 36 0.0026 21.7 2.3 58 2-60 67-138 (143)
7 d1kw3b2 d.32.1.3 (B:133-288) 2 15.6 25 0.0018 21.1 1.1 17 2-18 23-39 (156)
8 d2f9ca1 b.81.1.7 (A:3-322) Hyp 14.6 15 0.0011 24.9 -0.3 20 9-28 32-53 (320)
9 d1z2ua1 d.20.1.1 (A:1-147) Ubi 14.3 18 0.0013 21.9 0.1 14 1-14 1-14 (147)
10 d1v5da_ a.102.1.2 (A:) Chitosa 13.4 87 0.0063 22.0 3.7 23 26-48 22-44 (386)
No 1
>d1k78a1 a.4.1.5 (A:19-81) Pax-5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=38.33 E-value=11 Score=21.05 Aligned_cols=29 Identities=14% Similarity=0.284 Sum_probs=21.4
Q ss_pred CCHHHHHHHHH---hHHHHHHHhhhccCCccH
Q 034630 26 FSMNYVKQTVQ---RGLDNYHAKYIQTSSFDP 54 (89)
Q Consensus 26 ~sp~~i~~a~~---r~~~rY~~KYi~~gs~aP 54 (89)
.|+..++..|. ....+|-.+|=+||+++|
T Consensus 31 ~s~r~aA~rf~VS~s~v~k~l~r~reTG~i~P 62 (63)
T d1k78a1 31 VRPCDISRQLRVSHGCVSKILGRYYETGSIKP 62 (63)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHHHHHSCCCC
T ss_pred CCHHHHHHHhCCCHHHHHHHHHHHHHhcCCCC
Confidence 56666666665 455688888888999988
No 2
>d1d02a_ c.52.1.8 (A:) Restriction endonuclease MunI {Mycoplasma, unidentified species [TaxId: 2093]}
Probab=30.44 E-value=12 Score=25.48 Aligned_cols=53 Identities=19% Similarity=0.327 Sum_probs=38.5
Q ss_pred HHHHHHHhhcCc-ccccccccc--CCCC--HHHHHHHHHhHHHHHHHhhhc---cCCccHHH
Q 034630 3 LRRIYNEVKGMK-VKELPNYLK--PMFS--MNYVKQTVQRGLDNYHAKYIQ---TSSFDPVY 56 (89)
Q Consensus 3 ~~~~~~~l~~vK-l~ElP~wl~--~~~s--p~~i~~a~~r~~~rY~~KYi~---~gs~aPl~ 56 (89)
|.+.+++++++| ..-||=|+- -|.| |..+ .-+.-+|+.|..-|+. +.+..||+
T Consensus 125 ll~~~r~~~~i~~~~~lpfwiv~~g~itrdp~rv-reit~W~d~~~~~yFmWr~~~~~~~Li 185 (197)
T d1d02a_ 125 LLKAYRTIGGINDEEILPFWVVFEGDITRDPKRV-REITFWYDHYQDNYFMWRPNESGEKLV 185 (197)
T ss_dssp HHHHHHHHHCCCCTTSCSEEEEEESGGGGCHHHH-HHHHHHHTTCTTSEEEECTTCCHHHHH
T ss_pred HHHHHHHhcCCCCCCCCceEEEEecccccCcchh-eeEEEehhhcCcceEEEcCCCCcHHHH
Confidence 667899999999 555999998 4455 4333 4456788899999987 45555654
No 3
>d1y02a1 a.140.2.1 (A:71-114) Rififylin (FYVE-RING finger protein Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Probab=27.03 E-value=6 Score=21.12 Aligned_cols=20 Identities=45% Similarity=0.615 Sum_probs=16.8
Q ss_pred HHhhcCcccccccccc-CCCC
Q 034630 8 NEVKGMKVKELPNYLK-PMFS 27 (89)
Q Consensus 8 ~~l~~vKl~ElP~wl~-~~~s 27 (89)
.+|+.+|+++|-.++. ++.|
T Consensus 4 ~eLm~LkvkDLr~YL~l~~I~ 24 (44)
T d1y02a1 4 EELMKMKVKDLRDYLSLHDIS 24 (44)
T ss_dssp HHHHTSCHHHHHHHHHHTTCC
T ss_pred HHHHHhhHHHHHHHHHHcCCC
Confidence 5799999999999988 6655
No 4
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=25.69 E-value=46 Score=18.88 Aligned_cols=17 Identities=18% Similarity=0.110 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHhhcch
Q 034630 56 YHVCIGGMIFSYLVALP 72 (89)
Q Consensus 56 ~hvl~g~~lfsY~i~y~ 72 (89)
+-.++|++++++.++-=
T Consensus 73 ~~~~~Gi~~~~~~~~~i 89 (103)
T d1r3jc_ 73 VVMVAGITSFGLVTAAL 89 (103)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44556777777776443
No 5
>d1sg7a1 a.239.1.1 (A:22-96) Putative cation transport regulator ChaB {Escherichia coli [TaxId: 562]}
Probab=19.53 E-value=26 Score=20.11 Aligned_cols=30 Identities=20% Similarity=0.417 Sum_probs=19.8
Q ss_pred ccccccccccCCCCHH---HHHHHHHhHHHHHH
Q 034630 14 KVKELPNYLKPMFSMN---YVKQTVQRGLDNYH 43 (89)
Q Consensus 14 Kl~ElP~wl~~~~sp~---~i~~a~~r~~~rY~ 43 (89)
+..|||+-|.+.+... -...++..++.+|.
T Consensus 4 s~~dLP~svr~~LP~~aQ~iy~~afNsa~e~y~ 36 (75)
T d1sg7a1 4 TKSDLPESVKHVLPSHAQDIYKEAFNSAWDQYK 36 (75)
T ss_dssp SSTTSCHHHHTTCCSHHHHHHHHHHHHHHHHCC
T ss_pred ChhhCCHHHHHhCCHHHHHHHHHHHHHHHHHhc
Confidence 4679999998776532 44566666666653
No 6
>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow (Bos taurus) [TaxId: 9913]}
Probab=17.62 E-value=36 Score=21.74 Aligned_cols=58 Identities=12% Similarity=0.242 Sum_probs=39.7
Q ss_pred cHHHHHHHhhcCccccccccccCCCCHH-------HHHHHHHh-------HHHHHHHhhhccCCccHHHHHHH
Q 034630 2 SLRRIYNEVKGMKVKELPNYLKPMFSMN-------YVKQTVQR-------GLDNYHAKYIQTSSFDPVYHVCI 60 (89)
Q Consensus 2 ~~~~~~~~l~~vKl~ElP~wl~~~~sp~-------~i~~a~~r-------~~~rY~~KYi~~gs~aPl~hvl~ 60 (89)
++..+++=|..+|-.|+++-++. ++++ .|-+++.. -+=.|++|-++.+|..+|+.||.
T Consensus 67 ~~~~vl~VL~siK~~dI~~~v~~-L~~~~~D~LMKYiYkG~~~p~~~s~~~LL~WHEKl~~~~G~G~IvRvlt 138 (143)
T d1k8kg_ 67 AGSIVLKVLISFKANDIEKAVQS-LDKNGVDLLMKYIYKGFESPSDNSSAVLLQWHEKALAAGGVGSIVRVLT 138 (143)
T ss_dssp HHHHHHHHHHHSCGGGHHHHHHT-SCHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHh-cChHhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhcCCccEEEEec
Confidence 45677888899999998888773 2333 33333332 23468888888888888888763
No 7
>d1kw3b2 d.32.1.3 (B:133-288) 2,3-Dihydroxybiphenyl dioxygenase (DHBD, BPHC enzyme) {Pseudomonas sp. [TaxId: 306]}
Probab=15.55 E-value=25 Score=21.14 Aligned_cols=17 Identities=24% Similarity=0.485 Sum_probs=14.2
Q ss_pred cHHHHHHHhhcCccccc
Q 034630 2 SLRRIYNEVKGMKVKEL 18 (89)
Q Consensus 2 ~~~~~~~~l~~vKl~El 18 (89)
+.++||++++++|+.+-
T Consensus 23 ~t~~FY~~vLG~~~~~~ 39 (156)
T d1kw3b2 23 KAMAFYTEVLGFVLSDI 39 (156)
T ss_dssp HHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHhcCceeeeE
Confidence 57899999999998653
No 8
>d2f9ca1 b.81.1.7 (A:3-322) Hypothetical protein YdcK {Salmonella enterica [TaxId: 28901]}
Probab=14.62 E-value=15 Score=24.90 Aligned_cols=20 Identities=10% Similarity=0.242 Sum_probs=16.3
Q ss_pred HhhcCcccccccccc--CCCCH
Q 034630 9 EVKGMKVKELPNYLK--PMFSM 28 (89)
Q Consensus 9 ~l~~vKl~ElP~wl~--~~~sp 28 (89)
-|+|||=++|.+|+. .++|-
T Consensus 32 ~~~~~~~~~~gg~~~~~~~ls~ 53 (320)
T d2f9ca1 32 DFNDVKAGTSGGWVDADNVLSQ 53 (320)
T ss_dssp CCSSSCTTCEEEEESSTTSBCS
T ss_pred cccccccCCCCceeecccccCC
Confidence 468999999999999 44764
No 9
>d1z2ua1 d.20.1.1 (A:1-147) Ubiquitin conjugating enzyme, UBC {Caenorhabditis elegans, E2 2 [TaxId: 6239]}
Probab=14.26 E-value=18 Score=21.91 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=7.7
Q ss_pred CcHHHHHHHhhcCc
Q 034630 1 MSLRRIYNEVKGMK 14 (89)
Q Consensus 1 ~~~~~~~~~l~~vK 14 (89)
||++++.+|+.++.
T Consensus 1 ~a~kRL~~E~~~l~ 14 (147)
T d1z2ua1 1 MALKRIQKELQDLG 14 (147)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 45555555555543
No 10
>d1v5da_ a.102.1.2 (A:) Chitosanase {Bacillus sp., strain k17 [TaxId: 1409]}
Probab=13.36 E-value=87 Score=21.96 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.8
Q ss_pred CCHHHHHHHHHhHHHHHHHhhhc
Q 034630 26 FSMNYVKQTVQRGLDNYHAKYIQ 48 (89)
Q Consensus 26 ~sp~~i~~a~~r~~~rY~~KYi~ 48 (89)
.|...+...+++.|..|+.+||.
T Consensus 22 ~~q~~~~~~~~~~y~~wk~~yl~ 44 (386)
T d1v5da_ 22 VTQESLNASVRSYYDNWKKKYLK 44 (386)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHEE
T ss_pred cCHHHHHHHHHHHHHHHHHHHhh
Confidence 67778889999999999999997
Done!