Query 034631
Match_columns 89
No_of_seqs 47 out of 49
Neff 2.4
Searched_HMMs 29240
Date Mon Mar 25 07:35:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/034631.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/034631hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2gow_A HCG-1 protein, ubiquiti 50.6 4.8 0.00016 27.0 0.8 21 64-84 64-84 (125)
2 2faz_A Ubiquitin-like containi 50.5 5.5 0.00019 22.7 1.0 20 65-84 44-63 (78)
3 1x1m_A Ubiquitin-like protein 49.9 4.4 0.00015 25.4 0.5 23 61-83 63-85 (107)
4 1wgh_A Ubiquitin-like 3, HCG-1 49.2 6.1 0.00021 26.2 1.2 20 65-84 64-83 (116)
5 2wyq_A HHR23A, UV excision rep 46.9 7.1 0.00024 22.5 1.1 20 65-84 48-67 (85)
6 3dbh_I NEDD8; cell cycle, acti 44.2 9 0.00031 22.1 1.2 20 65-84 52-71 (88)
7 4dwf_A HLA-B-associated transc 43.8 11 0.00036 22.2 1.5 21 65-85 45-65 (90)
8 1wgd_A Homocysteine-responsive 42.7 5.8 0.0002 23.8 0.2 20 65-84 51-70 (93)
9 1ndd_A NEDD8, protein (ubiquit 42.3 9.4 0.00032 21.1 1.1 20 65-84 40-59 (76)
10 1uel_A HHR23B, UV excision rep 42.2 8.9 0.0003 23.2 1.0 20 65-84 43-62 (95)
11 3phx_B Ubiquitin-like protein 41.9 9.5 0.00032 21.8 1.1 20 65-84 44-63 (79)
12 2dzi_A Ubiquitin-like protein 40.8 10 0.00035 21.4 1.1 35 45-84 32-66 (81)
13 4eew_A Large proline-rich prot 40.4 13 0.00044 21.7 1.5 23 65-87 57-79 (88)
14 1wia_A Hypothetical ubiquitin- 39.4 10 0.00035 22.7 1.0 21 64-84 43-64 (95)
15 2bwf_A Ubiquitin-like protein 39.2 11 0.00037 21.1 1.0 20 65-84 43-62 (77)
16 2dzj_A Synaptic glycoprotein S 38.9 9.2 0.00032 23.5 0.7 36 45-84 38-75 (88)
17 3n3k_B Ubiquitin; hydrolase, p 38.5 11 0.00037 21.5 0.9 20 65-84 43-62 (85)
18 1se9_A Ubiquitin family; ubiqu 37.9 11 0.00038 25.6 1.1 26 59-84 58-83 (126)
19 2kdb_A Homocysteine-responsive 37.7 9 0.00031 24.3 0.6 24 61-84 63-86 (99)
20 3a9j_A Ubiquitin; protein comp 37.3 12 0.00042 20.6 1.0 20 65-84 40-59 (76)
21 2kk8_A Uncharacterized protein 37.2 8.2 0.00028 23.3 0.3 20 65-84 50-70 (84)
22 4fbj_B NEDD8; effector-HOST ta 37.1 12 0.00042 22.3 1.1 20 65-84 40-59 (88)
23 3v6c_B Ubiquitin; structural g 36.6 13 0.00043 22.1 1.1 20 65-84 57-76 (91)
24 2kd0_A LRR repeats and ubiquit 35.3 13 0.00045 22.2 1.0 21 64-84 50-70 (85)
25 2l7r_A Ubiquitin-like protein 35.0 9.9 0.00034 23.1 0.4 20 65-84 57-76 (93)
26 2lxa_A Ubiquitin-like protein 34.6 10 0.00035 23.6 0.4 21 65-85 44-64 (87)
27 2uyz_B Small ubiquitin-related 34.4 9.6 0.00033 21.8 0.3 20 65-84 43-62 (79)
28 3m62_B UV excision repair prot 34.1 14 0.00049 23.0 1.1 21 64-84 40-60 (106)
29 2hj8_A Interferon-induced 17 k 33.5 8.3 0.00028 23.0 -0.1 19 65-83 44-62 (88)
30 1wx8_A Riken cDNA 4931431F19; 33.4 11 0.00038 22.5 0.5 34 45-83 41-74 (96)
31 3mtn_B UBA80, ubcep1, ubiquiti 33.2 16 0.00055 20.7 1.1 20 65-84 43-62 (85)
32 4hcn_B Polyubiquitin, ubiquiti 33.1 15 0.00053 22.2 1.1 20 65-84 62-81 (98)
33 1uh6_A Ubiquitin-like 5; beta- 32.5 11 0.00038 24.6 0.4 20 64-83 67-86 (100)
34 1sif_A Ubiquitin; hydrophobic 32.4 16 0.00056 21.7 1.1 21 64-84 48-68 (88)
35 2kan_A Uncharacterized protein 32.3 11 0.00037 23.2 0.3 19 65-83 54-73 (94)
36 1wy8_A NP95-like ring finger p 32.3 11 0.00037 22.0 0.2 19 65-83 49-67 (89)
37 4a20_A Ubiquitin-like protein 32.2 20 0.00069 22.7 1.6 21 65-85 62-82 (98)
38 2fnj_B Transcription elongatio 31.9 11 0.00039 25.3 0.3 19 65-83 41-59 (118)
39 3k9o_B Ubiquitin, UBB+1; E2-25 31.3 17 0.00058 21.4 1.0 20 65-84 41-60 (96)
40 1wh3_A 59 kDa 2'-5'-oligoadeny 31.0 12 0.0004 21.7 0.2 19 65-83 47-65 (87)
41 1we6_A Splicing factor, putati 29.8 16 0.00054 22.8 0.7 20 65-84 71-90 (111)
42 3b1l_X E3 ubiquitin-protein li 35.6 11 0.00039 21.1 0.0 20 65-84 40-59 (76)
43 3m63_B Ubiquitin domain-contai 29.3 19 0.00066 22.3 1.1 20 65-84 67-86 (101)
44 1yqb_A Ubiquilin 3; structural 28.9 14 0.00047 22.9 0.3 35 45-84 46-80 (100)
45 2klc_A Ubiquilin-1; ubiquitin- 28.1 19 0.00066 22.2 0.9 35 45-84 49-83 (101)
46 1yx5_B Ubiquitin; proteasome, 28.1 21 0.00071 21.4 1.0 20 65-84 40-59 (98)
47 1wju_A NEDD8 ultimate buster-1 27.8 15 0.00051 23.9 0.4 19 65-83 59-77 (100)
48 1j8c_A Ubiquitin-like protein 27.7 19 0.00065 23.4 0.9 20 65-84 71-90 (125)
49 1we7_A SF3A1 protein; structur 27.4 15 0.0005 23.1 0.3 19 65-83 75-93 (115)
50 1wgg_A Ubiquitin carboxyl-term 27.1 21 0.00072 22.0 1.0 34 45-84 32-65 (96)
51 1ttn_A DC-UBP, dendritic cell- 26.8 14 0.00049 22.8 0.1 20 65-84 63-82 (106)
52 4ajy_B Transcription elongatio 26.5 22 0.00074 24.1 1.0 20 65-84 41-60 (118)
53 1v5t_A 8430435I17RIK protein; 26.5 16 0.00056 21.9 0.4 20 64-83 46-68 (90)
54 1v5o_A 1700011N24RIK protein; 26.3 18 0.0006 22.3 0.5 19 65-83 51-70 (102)
55 1wyw_B Ubiquitin-like protein 25.9 16 0.00056 22.2 0.3 20 65-84 61-80 (97)
56 2kdi_A Ubiquitin, vacuolar pro 25.7 23 0.0008 22.4 1.0 20 65-84 49-68 (114)
57 3rt3_B Ubiquitin-like protein 25.4 25 0.00085 22.6 1.1 20 65-84 121-140 (159)
58 1wx7_A Ubiquilin 3; ubiquitin- 24.4 18 0.00061 22.3 0.2 34 45-83 41-74 (106)
59 3vdz_A Ubiquitin-40S ribosomal 23.5 27 0.00093 21.9 1.0 20 65-84 75-94 (111)
60 3b08_A Polyubiquitin-C, ubiqui 23.4 28 0.00096 21.6 1.0 20 65-84 116-135 (152)
61 4e8f_A Poly(A) RNA polymerase 22.6 12 0.00042 29.0 -1.0 57 5-61 338-403 (405)
62 2wul_A Glutaredoxin related pr 22.3 47 0.0016 21.8 2.0 35 36-76 52-88 (118)
63 3mhs_E SAGA-associated factor 21.7 41 0.0014 22.6 1.6 27 28-57 32-61 (96)
64 3u30_A Ubiquitin, linear DI-ub 21.6 33 0.0011 22.5 1.2 21 64-84 135-155 (172)
65 3l0w_B Monoubiquitinated proli 21.5 31 0.0011 23.4 1.0 20 65-84 40-59 (169)
66 2ojr_A Ubiquitin; lanthide-bin 21.3 31 0.001 21.5 0.9 20 65-84 75-94 (111)
67 1wxv_A BAG-family molecular ch 20.9 24 0.00083 20.9 0.3 35 44-83 35-70 (92)
No 1
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=50.60 E-value=4.8 Score=27.00 Aligned_cols=21 Identities=14% Similarity=0.017 Sum_probs=17.9
Q ss_pred chhhhhccCeeccCCcccccc
Q 034631 64 WRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 64 ~rqr~q~nGk~~ed~n~~~d~ 84 (89)
=+||.-.+||+++|+.+++|.
T Consensus 64 ~~qrLIy~GK~LeD~~TL~~y 84 (125)
T 2gow_A 64 NILRLIYQGRFLHGNVTLGAL 84 (125)
T ss_dssp GGEEEESSSSEEESSCBTGGG
T ss_pred HHEEEEECCcCCCCCCcHHHc
Confidence 378999999999999877764
No 2
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=50.53 E-value=5.5 Score=22.69 Aligned_cols=20 Identities=40% Similarity=0.448 Sum_probs=17.1
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 44 ~qrL~~~g~~L~d~~tL~~~ 63 (78)
T 2faz_A 44 LQRLFYRGKQMEDGHTLFDY 63 (78)
T ss_dssp GEEEEETTEECCTTCBTTTT
T ss_pred hEEEEECCEECCCCCCHHHc
Confidence 79999999999998877764
No 3
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.90 E-value=4.4 Score=25.40 Aligned_cols=23 Identities=17% Similarity=0.052 Sum_probs=18.4
Q ss_pred CccchhhhhccCeeccCCccccc
Q 034631 61 PADWRQRTQVNGKVLEDGNVHAD 83 (89)
Q Consensus 61 ~~D~rqr~q~nGk~~ed~n~~~d 83 (89)
|++.|||...+||.++|..+++|
T Consensus 63 p~~~~qrLi~~Gk~L~D~~tL~~ 85 (107)
T 1x1m_A 63 PDPELIDLIYCGRKLKDDQTLDF 85 (107)
T ss_dssp CCSSSEEEEETTEECCTTCBHHH
T ss_pred ChhhcEEEEECCeECCCCCcHHH
Confidence 45556999999999999876665
No 4
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=49.23 E-value=6.1 Score=26.20 Aligned_cols=20 Identities=15% Similarity=0.077 Sum_probs=17.6
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||.-..||+++|+.+++|.
T Consensus 64 qqrLIy~GK~LeD~~TL~~y 83 (116)
T 1wgh_A 64 ILRLIYQGRFLHGNVTLGAL 83 (116)
T ss_dssp TEEEEETTEEECSSCBTTTT
T ss_pred HEEEEECCcCCCCCCcHHHc
Confidence 78999999999999877764
No 5
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=46.90 E-value=7.1 Score=22.48 Aligned_cols=20 Identities=30% Similarity=0.305 Sum_probs=17.0
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 48 ~qrLi~~Gk~L~D~~tL~~~ 67 (85)
T 2wyq_A 48 GQKLIYAGKILSDDVPIRDY 67 (85)
T ss_dssp GEEEEETTEECCTTSBGGGG
T ss_pred HeEEEECCEECcCCCCHHHc
Confidence 68999999999998777764
No 6
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=44.17 E-value=9 Score=22.09 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=17.0
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 52 ~qrL~~~G~~L~d~~tL~~~ 71 (88)
T 3dbh_I 52 QQRLIYSGKQMNDEKTAADY 71 (88)
T ss_dssp GCCEEETTEECCTTSBGGGG
T ss_pred HEEEEECCeECCCCCcHHHc
Confidence 68999999999997777774
No 7
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=43.81 E-value=11 Score=22.20 Aligned_cols=21 Identities=29% Similarity=0.441 Sum_probs=17.4
Q ss_pred hhhhhccCeeccCCccccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADNA 85 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~~ 85 (89)
+||.-.+||.++|..+++|..
T Consensus 45 ~qrLi~~Gk~L~d~~tL~~~~ 65 (90)
T 4dwf_A 45 KQRLIYQGRVLQDDKKLQEYN 65 (90)
T ss_dssp GEEEEETTEECCTTSBGGGGT
T ss_pred HEEEEECCeECCCCCCHHHcC
Confidence 589999999999987777743
No 8
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=42.67 E-value=5.8 Score=23.83 Aligned_cols=20 Identities=35% Similarity=0.330 Sum_probs=17.1
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
|||.-.+||.++|..+++|.
T Consensus 51 ~QrLi~~Gk~L~D~~tL~~~ 70 (93)
T 1wgd_A 51 DQRLIYSGKLLLDHQCLRDL 70 (93)
T ss_dssp TCEEEETTEECCSSSCHHHH
T ss_pred HeEEEECCEECcCcCCHHHH
Confidence 89999999999998766664
No 9
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=42.34 E-value=9.4 Score=21.06 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=16.8
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 40 ~q~L~~~g~~L~d~~tL~~~ 59 (76)
T 1ndd_A 40 QQRLIYSGKQMNDEKTAADY 59 (76)
T ss_dssp GEEEEETTEECCTTSBGGGG
T ss_pred HEEEEECCEECCCCCcHHHc
Confidence 78999999999998776664
No 10
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=42.19 E-value=8.9 Score=23.24 Aligned_cols=20 Identities=25% Similarity=0.368 Sum_probs=17.1
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 43 ~qrLi~~Gk~L~D~~tL~~y 62 (95)
T 1uel_A 43 GQKLIYAGKILNDDTALKEY 62 (95)
T ss_dssp TEEEEETTEECCTTSBGGGG
T ss_pred hEEEEECCEECCCcCcHHHC
Confidence 79999999999998777764
No 11
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=41.94 E-value=9.5 Score=21.79 Aligned_cols=20 Identities=25% Similarity=0.131 Sum_probs=17.1
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 44 ~qrL~~~G~~L~d~~tL~~~ 63 (79)
T 3phx_B 44 LFWLTFEGKPLEDQLPLGEY 63 (79)
T ss_dssp GEEEEETTEECCTTSBGGGG
T ss_pred HEEEEECCEECCCCCcHHHC
Confidence 58999999999998777774
No 12
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=40.76 E-value=10 Score=21.41 Aligned_cols=35 Identities=31% Similarity=0.343 Sum_probs=23.2
Q ss_pred cchhhhhhcCCCCCCCCccchhhhhccCeeccCCcccccc
Q 034631 45 RTKEENHKLLNGNSVDPADWRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 45 r~kEe~hkllNGn~vd~~D~rqr~q~nGk~~ed~n~~~d~ 84 (89)
..|+..++.. .+.+. +||...+||.++|..+++|.
T Consensus 32 ~LK~~i~~~~---~i~~~--~qrL~~~gk~L~d~~tL~~~ 66 (81)
T 2dzi_A 32 TLKQLVSEKL---NVPVR--QQRLLFKGKALADGKRLSDY 66 (81)
T ss_dssp HHHHHHHHHT---CCCTT--TCEEEETTEECCTTSBGGGG
T ss_pred HHHHHHHHHH---CcCHH--HEEEEECCeECCCCCcHHHc
Confidence 3444444443 24332 79999999999998777764
No 13
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=40.43 E-value=13 Score=21.73 Aligned_cols=23 Identities=26% Similarity=0.432 Sum_probs=18.4
Q ss_pred hhhhhccCeeccCCccccccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADNAMN 87 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~~~n 87 (89)
+||.-.+||.++|..+++|...+
T Consensus 57 ~qrLi~~Gk~L~D~~tL~~~~i~ 79 (88)
T 4eew_A 57 KQRLIYQGRVLQDDKKLQEYNVG 79 (88)
T ss_dssp GEEEEETTEECCTTSBGGGGTCT
T ss_pred HEEEEECCEECCCCCcHHHcCCC
Confidence 68999999999997777775433
No 14
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=39.41 E-value=10 Score=22.70 Aligned_cols=21 Identities=14% Similarity=0.211 Sum_probs=17.3
Q ss_pred chhhhhccCeeccCC-cccccc
Q 034631 64 WRQRTQVNGKVLEDG-NVHADN 84 (89)
Q Consensus 64 ~rqr~q~nGk~~ed~-n~~~d~ 84 (89)
-+||...+||.++|. .+++|.
T Consensus 43 ~~qrLi~~Gk~L~D~~~tL~~y 64 (95)
T 1wia_A 43 SQMKLIYQGRLLQDPARTLSSL 64 (95)
T ss_dssp TTCEEEETTEECCCSSCBTTTT
T ss_pred CcEEEEECCEEccCCcCCHHHc
Confidence 389999999999999 566664
No 15
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=39.17 E-value=11 Score=21.11 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=16.7
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 43 ~qrL~~~gk~L~d~~tL~~~ 62 (77)
T 2bwf_A 43 NQRLIYSGKILKDDQTVESY 62 (77)
T ss_dssp GEEEEETTEECCTTSBTGGG
T ss_pred HEEEEECCeEcCCCCCHHHc
Confidence 78999999999998776664
No 16
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=38.95 E-value=9.2 Score=23.52 Aligned_cols=36 Identities=28% Similarity=0.231 Sum_probs=23.6
Q ss_pred cchhhhhhcCCCCCCCCccchhhhhcc--CeeccCCcccccc
Q 034631 45 RTKEENHKLLNGNSVDPADWRQRTQVN--GKVLEDGNVHADN 84 (89)
Q Consensus 45 r~kEe~hkllNGn~vd~~D~rqr~q~n--Gk~~ed~n~~~d~ 84 (89)
..|+..++...| +.| -|||.... ||.++|+.+++|.
T Consensus 38 ~lK~~I~~~~~~--i~~--~~QrL~~~~~Gk~L~D~~tL~~y 75 (88)
T 2dzj_A 38 EIKNLFTKTHPQ--WYP--ARQSLRLDPKGKSLKDEDVLQKL 75 (88)
T ss_dssp HHHHHHHHHCSS--SCT--TTCCEESSTTSCCCCTTCBTTTS
T ss_pred HHHHHHHHHhcC--CCh--HHeEEEecCCCcCcCCCCCHHHc
Confidence 456666664333 333 37887765 9999998877764
No 17
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=38.51 E-value=11 Score=21.52 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=16.7
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 43 ~qrL~~~g~~L~d~~tL~~~ 62 (85)
T 3n3k_B 43 QQRLIFAGKQLEDGRTLSDY 62 (85)
T ss_dssp GEEEEETBEECCTTCBTTTT
T ss_pred HEEEEECCeECCCCCCHHHC
Confidence 68999999999998776664
No 18
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=37.93 E-value=11 Score=25.61 Aligned_cols=26 Identities=23% Similarity=0.153 Sum_probs=20.6
Q ss_pred CCCccchhhhhccCeeccCCcccccc
Q 034631 59 VDPADWRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 59 vd~~D~rqr~q~nGk~~ed~n~~~d~ 84 (89)
+.+.-=+||.--+||.+||+.+++|.
T Consensus 58 iP~~~~qQrLIy~GK~LeD~~TLsdy 83 (126)
T 1se9_A 58 GPKTVKEVKLISAGKVLENSKTVKDY 83 (126)
T ss_dssp SCCSGGGEEEEETTEECCTTSBGGGG
T ss_pred CCCChhhEEEEECCeECcCCCcHHHc
Confidence 33333589999999999999988874
No 19
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=37.69 E-value=9 Score=24.33 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=19.2
Q ss_pred CccchhhhhccCeeccCCcccccc
Q 034631 61 PADWRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 61 ~~D~rqr~q~nGk~~ed~n~~~d~ 84 (89)
|.--+||.-.+||.++|..+++|.
T Consensus 63 pp~~~QrLIy~Gk~L~D~~tL~~y 86 (99)
T 2kdb_A 63 PLTKDQRLVYSGRLLPDHLQLKDI 86 (99)
T ss_dssp CCTTTCCEEETTEEECTTSBTHHH
T ss_pred CChhhEEEEECCEECCCCCCHHHH
Confidence 333489999999999999877764
No 20
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=37.25 E-value=12 Score=20.59 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=16.6
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 40 ~q~L~~~g~~L~d~~tL~~~ 59 (76)
T 3a9j_A 40 QQRLIFAGKQLEDGRTLSDY 59 (76)
T ss_dssp GEEEEETTEECCTTCBTGGG
T ss_pred HeEEEECCeECCCCCcHHHc
Confidence 79999999999987676664
No 21
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=37.23 E-value=8.2 Score=23.28 Aligned_cols=20 Identities=25% Similarity=0.282 Sum_probs=17.1
Q ss_pred hhhhhccCee-ccCCcccccc
Q 034631 65 RQRTQVNGKV-LEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~-~ed~n~~~d~ 84 (89)
+||...+||. ++|..+++|.
T Consensus 50 ~QrLi~~Gk~lL~D~~tL~~y 70 (84)
T 2kk8_A 50 KQTLIVDGIVILREDLTVEQC 70 (84)
T ss_dssp GEEEEETTEECCCSSSBHHHH
T ss_pred HEEEEECCEEecCCcCCHHHc
Confidence 8999999999 9998877663
No 22
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=37.12 E-value=12 Score=22.30 Aligned_cols=20 Identities=35% Similarity=0.453 Sum_probs=17.0
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 40 ~qrLi~~Gk~L~D~~tL~~~ 59 (88)
T 4fbj_B 40 QQRLIYSGKQMNDEKTAADY 59 (88)
T ss_dssp GCEEEETTEECCTTSBTTTT
T ss_pred HEEEEECCeECCCCCcHHHc
Confidence 68999999999997777774
No 23
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=36.61 E-value=13 Score=22.12 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=17.1
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 57 ~qrL~~~Gk~L~D~~tL~~~ 76 (91)
T 3v6c_B 57 QQRLIFAGKQLEDGRTLSDY 76 (91)
T ss_dssp GCEEEETTEECCTTCBTGGG
T ss_pred hEEEEECCeECCCcCcHHHC
Confidence 69999999999998776664
No 24
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=35.28 E-value=13 Score=22.23 Aligned_cols=21 Identities=24% Similarity=0.284 Sum_probs=17.3
Q ss_pred chhhhhccCeeccCCcccccc
Q 034631 64 WRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 64 ~rqr~q~nGk~~ed~n~~~d~ 84 (89)
-|||...+||.++|..+++|.
T Consensus 50 ~~qrL~~~Gk~L~D~~tL~~~ 70 (85)
T 2kd0_A 50 RGQKLIFKGKVLVETSTLKQS 70 (85)
T ss_dssp TTCEEEETTEECCTTCBTTTT
T ss_pred HHEEEEECCeECCCcCCHHHC
Confidence 478999999999998777764
No 25
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=34.98 E-value=9.9 Score=23.08 Aligned_cols=20 Identities=25% Similarity=0.229 Sum_probs=16.8
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 57 ~qrLi~~Gk~L~D~~tL~~y 76 (93)
T 2l7r_A 57 DQVVLLAGAPLEDEATLGQC 76 (93)
T ss_dssp GCEEEETTEECCTTSBHHHH
T ss_pred HEEEEECCEECCCCCcHHHC
Confidence 89999999999998766653
No 26
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=34.59 E-value=10 Score=23.55 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=17.8
Q ss_pred hhhhhccCeeccCCccccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADNA 85 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~~ 85 (89)
+||.-.+||.++|..+++|..
T Consensus 44 ~QrLi~~Gk~L~D~~tL~~y~ 64 (87)
T 2lxa_A 44 EIKLLLKGKVLHDNLFLSDLK 64 (87)
T ss_dssp TEEEEETTEECCTTCBHHHHC
T ss_pred HEEEEECCEECcCcCCHHHcC
Confidence 589999999999998777744
No 27
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=34.45 E-value=9.6 Score=21.77 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=17.1
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||.-.+||.++|..+++|.
T Consensus 43 ~qrL~~~G~~L~d~~tl~~~ 62 (79)
T 2uyz_B 43 SLRFLFEGQRIADNHTPKEL 62 (79)
T ss_dssp GEEEEETTEECCTTCCHHHH
T ss_pred cEEEEECCEEeCCCCCHHHc
Confidence 79999999999998876663
No 28
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=34.07 E-value=14 Score=23.01 Aligned_cols=21 Identities=24% Similarity=0.325 Sum_probs=17.4
Q ss_pred chhhhhccCeeccCCcccccc
Q 034631 64 WRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 64 ~rqr~q~nGk~~ed~n~~~d~ 84 (89)
-+||.-.+||.++|..+++|.
T Consensus 40 ~~QrLi~~Gk~L~D~~tL~~~ 60 (106)
T 3m62_B 40 SQIKLIYSGKVLQDSKTVSEC 60 (106)
T ss_dssp GGCEEEETTEECCTTSBTTTT
T ss_pred hhEEEEECCEECCCcCCHHHc
Confidence 368999999999998777774
No 29
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=33.48 E-value=8.3 Score=22.99 Aligned_cols=19 Identities=26% Similarity=0.162 Sum_probs=16.1
Q ss_pred hhhhhccCeeccCCccccc
Q 034631 65 RQRTQVNGKVLEDGNVHAD 83 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d 83 (89)
+||...+||.++|..+++|
T Consensus 44 ~qrL~~~Gk~L~D~~tL~~ 62 (88)
T 2hj8_A 44 LFWLTFEGKPLEDQLPLGE 62 (88)
T ss_dssp TEEEESSSSCCCTTSBHHH
T ss_pred HEEEEECCEECCCCCcHHH
Confidence 7899999999999876665
No 30
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=33.38 E-value=11 Score=22.50 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=22.7
Q ss_pred cchhhhhhcCCCCCCCCccchhhhhccCeeccCCccccc
Q 034631 45 RTKEENHKLLNGNSVDPADWRQRTQVNGKVLEDGNVHAD 83 (89)
Q Consensus 45 r~kEe~hkllNGn~vd~~D~rqr~q~nGk~~ed~n~~~d 83 (89)
..|+...... .+.+ -+||...+||.++|..+++|
T Consensus 41 ~LK~~I~~~~---gip~--~~qrL~~~Gk~L~D~~tL~~ 74 (96)
T 1wx8_A 41 RFKKQISKYL---HCNA--DRLVLIFTGKILRDQDILSQ 74 (96)
T ss_dssp HHHHHHHHHT---CSCT--TTBCCEETTEECCTTSCHHH
T ss_pred HHHHHHHHHh---CCCH--HHEEEEECCEECCCcCCHHH
Confidence 3455555443 2443 37999999999998876665
No 31
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=33.16 E-value=16 Score=20.68 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=16.5
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 43 ~qrL~~~g~~L~d~~tL~~~ 62 (85)
T 3mtn_B 43 QQRLIFAGKQLEDGRTLSDY 62 (85)
T ss_dssp GCEEEETTEECCTTSBTGGG
T ss_pred HEEEEECCEECCCCCCHHHc
Confidence 68999999999997766663
No 32
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=33.14 E-value=15 Score=22.25 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=16.9
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 62 ~qrLi~~Gk~L~D~~tL~~~ 81 (98)
T 4hcn_B 62 QQRLIFAGKQLEDGRTLSDY 81 (98)
T ss_dssp GCEEEETTEECCTTCBSGGG
T ss_pred HEEEEECCEECCCCCcHHHC
Confidence 68999999999998777764
No 33
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=32.53 E-value=11 Score=24.58 Aligned_cols=20 Identities=10% Similarity=-0.065 Sum_probs=16.9
Q ss_pred chhhhhccCeeccCCccccc
Q 034631 64 WRQRTQVNGKVLEDGNVHAD 83 (89)
Q Consensus 64 ~rqr~q~nGk~~ed~n~~~d 83 (89)
-|||....||+++|..+++|
T Consensus 67 ~qQrLi~~Gk~L~D~~TL~d 86 (100)
T 1uh6_A 67 NKIVLKKWYTIFKDHVSLGD 86 (100)
T ss_dssp GGCEEEETTEECCSSCBHHH
T ss_pred HHEEEEECCEECCCCCCHHH
Confidence 37899999999999887766
No 34
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=32.45 E-value=16 Score=21.71 Aligned_cols=21 Identities=43% Similarity=0.482 Sum_probs=17.2
Q ss_pred chhhhhccCeeccCCcccccc
Q 034631 64 WRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 64 ~rqr~q~nGk~~ed~n~~~d~ 84 (89)
-+||...+||.++|..+++|.
T Consensus 48 ~~qrL~~~Gk~L~D~~tL~~~ 68 (88)
T 1sif_A 48 DQQRLIFAGKQLEDGRTLSDY 68 (88)
T ss_dssp GGCEEEETTEECCTTSBSGGG
T ss_pred hhEEEEECCEECCCCCcHHHc
Confidence 378999999999997777764
No 35
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=32.33 E-value=11 Score=23.16 Aligned_cols=19 Identities=21% Similarity=0.212 Sum_probs=16.4
Q ss_pred hhhhhccCeeccCC-ccccc
Q 034631 65 RQRTQVNGKVLEDG-NVHAD 83 (89)
Q Consensus 65 rqr~q~nGk~~ed~-n~~~d 83 (89)
+||...+||.++|. .+++|
T Consensus 54 ~QrLi~~Gk~L~D~~~tL~~ 73 (94)
T 2kan_A 54 RMQLYYSGIELADDYRNLNE 73 (94)
T ss_dssp TEEEEETTEEECCTTSBHHH
T ss_pred HEEEEECCEECCCCcccHHH
Confidence 79999999999999 56665
No 36
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=32.31 E-value=11 Score=22.05 Aligned_cols=19 Identities=42% Similarity=0.428 Sum_probs=16.2
Q ss_pred hhhhhccCeeccCCccccc
Q 034631 65 RQRTQVNGKVLEDGNVHAD 83 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d 83 (89)
+||...+||.++|..+++|
T Consensus 49 ~qrL~~~gk~L~d~~tL~~ 67 (89)
T 1wy8_A 49 CQRLFYRGKQLENGYTLFD 67 (89)
T ss_dssp TEEEEETTEECCSSSBHHH
T ss_pred hEEEEECCeECCCCCCHHH
Confidence 7999999999998876665
No 37
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=32.24 E-value=20 Score=22.69 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.3
Q ss_pred hhhhhccCeeccCCccccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADNA 85 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~~ 85 (89)
+||.-.+||.++|..+++|..
T Consensus 62 ~QrLi~~Gk~L~D~~tL~dy~ 82 (98)
T 4a20_A 62 EIKLLLKGKVLHDNLFLSDLK 82 (98)
T ss_dssp GEEEEETTEEECTTCBGGGSC
T ss_pred hEEEEECCEECcCcCCHHHcC
Confidence 689999999999998888854
No 38
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=31.94 E-value=11 Score=25.31 Aligned_cols=19 Identities=26% Similarity=0.506 Sum_probs=16.6
Q ss_pred hhhhhccCeeccCCccccc
Q 034631 65 RQRTQVNGKVLEDGNVHAD 83 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d 83 (89)
.||.-.+||.++|+.+++|
T Consensus 41 qQrLi~~Gk~LeD~~TLsd 59 (118)
T 2fnj_B 41 EQRLYKDDQLLDDGKTLGE 59 (118)
T ss_dssp GEEEEETTEECCTTSBHHH
T ss_pred HeEEEECCeECCCCCCHHH
Confidence 5888899999999997776
No 39
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=31.30 E-value=17 Score=21.45 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=16.7
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 41 ~qrL~~~G~~L~d~~tL~~~ 60 (96)
T 3k9o_B 41 QQRLIFAGKQLEDGRTLSDY 60 (96)
T ss_dssp GEEEEETTEECCTTSBTGGG
T ss_pred HEEEEECCEECCCCCcHHHc
Confidence 58999999999998776664
No 40
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=30.96 E-value=12 Score=21.71 Aligned_cols=19 Identities=26% Similarity=0.235 Sum_probs=16.0
Q ss_pred hhhhhccCeeccCCccccc
Q 034631 65 RQRTQVNGKVLEDGNVHAD 83 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d 83 (89)
+||...+||.++|..+++|
T Consensus 47 ~qrL~~~Gk~L~d~~tL~~ 65 (87)
T 1wh3_A 47 QQQLEFQGQVLQDWLGLGI 65 (87)
T ss_dssp TEEEEETTEECCSSSBHHH
T ss_pred HEEEEECCEEccCCCCHHH
Confidence 6889999999999876665
No 41
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=29.77 E-value=16 Score=22.75 Aligned_cols=20 Identities=20% Similarity=0.179 Sum_probs=17.1
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 71 ~QrL~~~Gk~L~D~~tL~~y 90 (111)
T 1we6_A 71 KQKLSGKAGFLKDNMSLAHY 90 (111)
T ss_dssp TSEEECSSSBCCTTSBTTTT
T ss_pred HeEEEECCEECCCCCcHHHC
Confidence 79999999999998777764
No 42
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=35.65 E-value=11 Score=21.14 Aligned_cols=20 Identities=20% Similarity=0.167 Sum_probs=16.4
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 40 ~qrL~~~gk~L~d~~tL~~~ 59 (76)
T 3b1l_X 40 QLRVIFAGKELPNHLTVQNC 59 (76)
Confidence 68999999999987766663
No 43
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=29.31 E-value=19 Score=22.34 Aligned_cols=20 Identities=30% Similarity=0.418 Sum_probs=17.1
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 67 ~QrLi~~Gk~L~D~~tL~~~ 86 (101)
T 3m63_B 67 NQRLIYSGKILKDDQTVESY 86 (101)
T ss_dssp TCCEEETTEECCTTSBTTTT
T ss_pred HEEEEECCEECCCcCcHHHC
Confidence 68999999999998777774
No 44
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=28.95 E-value=14 Score=22.92 Aligned_cols=35 Identities=26% Similarity=0.272 Sum_probs=23.2
Q ss_pred cchhhhhhcCCCCCCCCccchhhhhccCeeccCCcccccc
Q 034631 45 RTKEENHKLLNGNSVDPADWRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 45 r~kEe~hkllNGn~vd~~D~rqr~q~nGk~~ed~n~~~d~ 84 (89)
..|+...+.. .+.+ -+||...+||.++|..+++|.
T Consensus 46 ~LK~~I~~~~---gip~--~~QrLi~~Gk~L~D~~tL~~y 80 (100)
T 1yqb_A 46 QLKEEISQRF---KAHP--DQLVLIFAGKILKDPDSLAQC 80 (100)
T ss_dssp HHHHHHHHHH---TCCG--GGEEEEETTEECCTTSBHHHH
T ss_pred HHHHHHHHHH---CcCh--hhEEEEECCEECCCcCcHHHC
Confidence 3455444443 2433 379999999999998766653
No 45
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=28.09 E-value=19 Score=22.20 Aligned_cols=35 Identities=23% Similarity=0.229 Sum_probs=23.2
Q ss_pred cchhhhhhcCCCCCCCCccchhhhhccCeeccCCcccccc
Q 034631 45 RTKEENHKLLNGNSVDPADWRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 45 r~kEe~hkllNGn~vd~~D~rqr~q~nGk~~ed~n~~~d~ 84 (89)
..|+...+.. .+.+ -+||...+||.++|..+++|.
T Consensus 49 ~LK~~I~~~~---gip~--~~qrLi~~Gk~L~D~~tL~~~ 83 (101)
T 2klc_A 49 QFKEEISKRF---KSHT--DQLVLIFAGKILKDQDTLSQH 83 (101)
T ss_dssp HHHHHHHHHH---TCCG--GGEEEEETTEEECTTCCTGGG
T ss_pred HHHHHHHHHH---CcCh--hhEEEEECCEECCCcCcHHHc
Confidence 3444444443 2443 379999999999998777664
No 46
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=28.06 E-value=21 Score=21.44 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=16.7
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 40 ~qrL~~~Gk~L~D~~tL~~~ 59 (98)
T 1yx5_B 40 QQRLIFAGKQLEDGRTLSDY 59 (98)
T ss_dssp GEEEEETTEECCTTSBTGGG
T ss_pred hEEEEECCEECCCCCCHHHc
Confidence 78999999999997776664
No 47
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.84 E-value=15 Score=23.95 Aligned_cols=19 Identities=21% Similarity=0.253 Sum_probs=16.7
Q ss_pred hhhhhccCeeccCCccccc
Q 034631 65 RQRTQVNGKVLEDGNVHAD 83 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d 83 (89)
.||.-.+||+++|+.+++|
T Consensus 59 qQrLI~~GKiL~D~~TL~~ 77 (100)
T 1wju_A 59 YIKIVINKKQLQLGKTLEE 77 (100)
T ss_dssp TCEEEETTEECCTTSBHHH
T ss_pred HeEEEeCCeECCCCCcHHH
Confidence 7899899999999987766
No 48
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=27.74 E-value=19 Score=23.41 Aligned_cols=20 Identities=20% Similarity=0.300 Sum_probs=17.0
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 71 ~QrLi~~Gk~L~D~~tL~dy 90 (125)
T 1j8c_A 71 QLVLIFAGKILKDQDTLIQH 90 (125)
T ss_dssp SEEEEETTEEESTTSCGGGT
T ss_pred eEEEEECCEEcCCCCCHHHc
Confidence 79999999999998777764
No 49
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=27.38 E-value=15 Score=23.13 Aligned_cols=19 Identities=32% Similarity=0.414 Sum_probs=16.5
Q ss_pred hhhhhccCeeccCCccccc
Q 034631 65 RQRTQVNGKVLEDGNVHAD 83 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d 83 (89)
+||...+||.++|..+++|
T Consensus 75 ~QrL~~~Gk~L~D~~tL~~ 93 (115)
T 1we7_A 75 KQKLQYEGIFIKDSNSLAY 93 (115)
T ss_dssp TEEEEETTEEECTTSBHHH
T ss_pred HEEEEECCEECCCCCCHHH
Confidence 8999999999999876665
No 50
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=27.13 E-value=21 Score=21.97 Aligned_cols=34 Identities=29% Similarity=0.331 Sum_probs=22.4
Q ss_pred cchhhhhhcCCCCCCCCccchhhhhccCeeccCCcccccc
Q 034631 45 RTKEENHKLLNGNSVDPADWRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 45 r~kEe~hkllNGn~vd~~D~rqr~q~nGk~~ed~n~~~d~ 84 (89)
..|+....+. .|.+ -|||.-.+||.++|. .++|.
T Consensus 32 ~lK~~I~~~t---gip~--~~QkLi~~Gk~L~D~-tL~~~ 65 (96)
T 1wgg_A 32 VFKAQLFALT---GVQP--ARQKVMVKGGTLKDD-DWGNI 65 (96)
T ss_dssp HHHHHHHHHT---CCCT--TTSCCEETTEECCSS-CCCSC
T ss_pred HHHHHHHHHH---CcCH--HHeEEEECCcCCCCC-CHHHC
Confidence 3444444442 2443 389999999999998 76663
No 51
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=26.77 E-value=14 Score=22.85 Aligned_cols=20 Identities=25% Similarity=0.215 Sum_probs=16.6
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 63 ~qrLi~~Gk~L~D~~tL~~y 82 (106)
T 1ttn_A 63 SQRWFFSGRPLTDKMKFEEL 82 (106)
T ss_dssp TCEEEETTEECCTTSHHHHC
T ss_pred cEEEEECCEECCCCCcHHHc
Confidence 79999999999998766653
No 52
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=26.53 E-value=22 Score=24.12 Aligned_cols=20 Identities=25% Similarity=0.451 Sum_probs=17.6
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||.-.+||.++|+.+++|.
T Consensus 41 qQrLI~~Gk~LeD~kTL~dy 60 (118)
T 4ajy_B 41 EQRLYKDDQLLDDGKTLGEC 60 (118)
T ss_dssp GEEEEETTEECCTTSBTTTT
T ss_pred HeEEEeCCeECCCcCCHHHc
Confidence 58999999999999888874
No 53
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=26.49 E-value=16 Score=21.93 Aligned_cols=20 Identities=30% Similarity=0.239 Sum_probs=15.8
Q ss_pred chhhhh---ccCeeccCCccccc
Q 034631 64 WRQRTQ---VNGKVLEDGNVHAD 83 (89)
Q Consensus 64 ~rqr~q---~nGk~~ed~n~~~d 83 (89)
=|||.- .+||.++|...++|
T Consensus 46 ~~QkLi~~k~~Gk~L~D~~~L~~ 68 (90)
T 1v5t_A 46 ERQKLLGLKVKGKPAENDVKLGA 68 (90)
T ss_dssp TTCEEESCEETTEECCTTSBHHH
T ss_pred HHeEEEeeccCCcCcCCCCCHHH
Confidence 378888 89999998775554
No 54
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=26.30 E-value=18 Score=22.28 Aligned_cols=19 Identities=11% Similarity=0.122 Sum_probs=15.8
Q ss_pred hhhhhccCeeccCCc-cccc
Q 034631 65 RQRTQVNGKVLEDGN-VHAD 83 (89)
Q Consensus 65 rqr~q~nGk~~ed~n-~~~d 83 (89)
|||...+||.++|.. +++|
T Consensus 51 ~qrL~~~gk~L~D~~~tL~~ 70 (102)
T 1v5o_A 51 EAQIVYMEQLLTDDHCSLGS 70 (102)
T ss_dssp GBCEEETTEEECCSSSBHHH
T ss_pred HeEEEECCEECCCCcccHHH
Confidence 799999999999885 5655
No 55
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=25.87 E-value=16 Score=22.24 Aligned_cols=20 Identities=15% Similarity=0.227 Sum_probs=17.2
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 61 ~qrLif~Gk~L~d~~tl~dy 80 (97)
T 1wyw_B 61 SLRFLFEGQRIADNHTPKEL 80 (97)
T ss_dssp GEEEEETTEECCTTCCHHHH
T ss_pred hEEEEECCeEcCCCCCHHHC
Confidence 79999999999998876663
No 56
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=25.65 E-value=23 Score=22.42 Aligned_cols=20 Identities=45% Similarity=0.548 Sum_probs=16.7
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 49 ~qrLi~~Gk~L~D~~tL~~y 68 (114)
T 2kdi_A 49 QQRLIWAGKQLEDGRTLSDY 68 (114)
T ss_dssp GEEEEETTEECCTTCBTTTT
T ss_pred HEEEEECCEECCCCCcHHHC
Confidence 78999999999988777664
No 57
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=25.42 E-value=25 Score=22.60 Aligned_cols=20 Identities=25% Similarity=0.131 Sum_probs=17.3
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+|+.++|..+++|.
T Consensus 121 ~q~L~~~G~~L~d~~tL~~y 140 (159)
T 3rt3_B 121 LFWLTFEGKPLEDQLPLGEY 140 (159)
T ss_dssp GEEEEETTEECCTTSBGGGG
T ss_pred HEEEEECCeecCCCCCHHHc
Confidence 68999999999998877774
No 58
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=24.39 E-value=18 Score=22.28 Aligned_cols=34 Identities=26% Similarity=0.298 Sum_probs=22.3
Q ss_pred cchhhhhhcCCCCCCCCccchhhhhccCeeccCCccccc
Q 034631 45 RTKEENHKLLNGNSVDPADWRQRTQVNGKVLEDGNVHAD 83 (89)
Q Consensus 45 r~kEe~hkllNGn~vd~~D~rqr~q~nGk~~ed~n~~~d 83 (89)
..|+..++.. .+.+ -+||...+||.++|..+++|
T Consensus 41 ~LK~~I~~~~---gip~--~~qrLi~~Gk~L~D~~tL~~ 74 (106)
T 1wx7_A 41 QLKEEISQRF---KAHP--DQLVLIFAGKILKDPDSLAQ 74 (106)
T ss_dssp HHHHHHHHHH---TCCT--TTEEEEETTEECCTTSCHHH
T ss_pred HHHHHHHHHH---CcCh--hhEEEEECCEECCCcCcHHH
Confidence 3455444443 2443 37999999999998766555
No 59
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=23.52 E-value=27 Score=21.86 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=17.0
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 75 ~QrLi~~Gk~L~D~~tL~~~ 94 (111)
T 3vdz_A 75 QQRLIFAGKQLEDGRTLSDY 94 (111)
T ss_dssp GEEEEETTEECCTTSBTTTT
T ss_pred HEEEEECCEECCCCCcHHHC
Confidence 79999999999998776664
No 60
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=23.37 E-value=28 Score=21.62 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=17.0
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 116 ~qrL~~~g~~L~d~~tL~~~ 135 (152)
T 3b08_A 116 QQRLIFAGKQLEDGRTLSDY 135 (152)
T ss_dssp GEEEEETTEECCTTSBTGGG
T ss_pred hEEEEECCEECCCCCCHHHc
Confidence 78999999999998777764
No 61
>4e8f_A Poly(A) RNA polymerase protein CID1; beta polymerase-like nucleotidyl transferase, terminal uridi transferase, UTP, cytoplasmic; 2.60A {Schizosaccharomyces pombe 972h-} PDB: 4e7x_A* 4e80_A
Probab=22.57 E-value=12 Score=28.97 Aligned_cols=57 Identities=26% Similarity=0.390 Sum_probs=25.0
Q ss_pred hhhhccc----ceeeeehhhHHHHHHh-----HHHHhhhhceeeecccccchhhhhhcCCCCCCCC
Q 034631 5 IGREASK----RICAETTTEINLLVDN-----WKYLLAGLVLSSKDKEARTKEENHKLLNGNSVDP 61 (89)
Q Consensus 5 i~ReasK----Ri~~E~tvEl~LL~ek-----WklLLa~Lp~s~Kdkd~r~kEe~hkllNGn~vd~ 61 (89)
++|-++. +|..|+.-=..+|.+. |-.|+.-.|+-.+=...-...++.+|||--.+|-
T Consensus 338 v~r~vs~~~~~~I~~eF~rA~~iL~~~~~~~~w~~Lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 403 (405)
T 4e8f_A 338 VGRTVSSSGLYRIRGEFMAASRLLNSRSYPIPYDSLFEEAPIPPRRQKKTDEQSNKKLLNETDGDN 403 (405)
T ss_dssp TTTTCCHHHHHHHHHHHHHHHHHHTCSSSSCCGGGGGSCCCCC-----------------------
T ss_pred cccCCCHHHHHHHHHHHHHHHHHHhhhccCCCHHHHhCcCCCcccccccccHHHHHHHHHhccCCC
Confidence 4555432 8888888888888887 8888877666654111111227889999776663
No 62
>2wul_A Glutaredoxin related protein 5; chromosome 14 open reading frame 87, oxidoreductase, thiored family, GLRX5, FLB4739; HET: GSH; 2.40A {Homo sapiens}
Probab=22.31 E-value=47 Score=21.77 Aligned_cols=35 Identities=9% Similarity=0.187 Sum_probs=26.5
Q ss_pred ceeeec--ccccchhhhhhcCCCCCCCCccchhhhhccCeecc
Q 034631 36 VLSSKD--KEARTKEENHKLLNGNSVDPADWRQRTQVNGKVLE 76 (89)
Q Consensus 36 p~s~Kd--kd~r~kEe~hkllNGn~vd~~D~rqr~q~nGk~~e 76 (89)
||...| .|...+++..++-|+.+| |.+-+||+|+-
T Consensus 52 ~~~~~~v~~~~~~r~~l~~~sg~~Tv------PqIFI~g~~IG 88 (118)
T 2wul_A 52 DYAAYNVLDDPELRQGIKDYSNWPTI------PQVYLNGEFVG 88 (118)
T ss_dssp SCEEEETTSCHHHHHHHHHHHTCCSS------CEEEETTEEEE
T ss_pred CeEeecccCCHHHHHHHHHhccCCCC------CeEeECCEEEC
Confidence 677775 556667788888777665 88999999974
No 63
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=21.71 E-value=41 Score=22.63 Aligned_cols=27 Identities=26% Similarity=0.434 Sum_probs=18.0
Q ss_pred HHHHhhhh---ceeeecccccchhhhhhcCCCC
Q 034631 28 WKYLLAGL---VLSSKDKEARTKEENHKLLNGN 57 (89)
Q Consensus 28 WklLLa~L---p~s~Kdkd~r~kEe~hkllNGn 57 (89)
||-||+.. |+||.+-....|| |.+|+|
T Consensus 32 WK~Lls~aKn~p~q~~~in~~t~~---KyFn~n 61 (96)
T 3mhs_E 32 WKSLMSSAKDTPLQYDHMNRESLK---KYFNPN 61 (96)
T ss_dssp GGGGHHHHHHSCCCCSSBCHHHHH---HHBCTT
T ss_pred HHHHHHHHcCChhhhhccChHHHH---hhhCCc
Confidence 99999864 7887765555554 444444
No 64
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=21.63 E-value=33 Score=22.48 Aligned_cols=21 Identities=43% Similarity=0.482 Sum_probs=17.5
Q ss_pred chhhhhccCeeccCCcccccc
Q 034631 64 WRQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 64 ~rqr~q~nGk~~ed~n~~~d~ 84 (89)
-+||...+|+.++|..+++|-
T Consensus 135 ~~q~L~~~g~~L~D~~tL~~y 155 (172)
T 3u30_A 135 DQQRLIFAGKQLEDGRTLSDY 155 (172)
T ss_dssp GGCCEEETTEECCTTSBSGGG
T ss_pred eeEEEEECCccCCCCCcHHHh
Confidence 468899999999998877774
No 65
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=21.53 E-value=31 Score=23.41 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=17.2
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|-
T Consensus 40 ~QrLi~~Gk~L~D~~tL~~y 59 (169)
T 3l0w_B 40 QQRLIFAGKQLEDGRTLSDY 59 (169)
T ss_dssp TEEEEETTEECCTTSBGGGG
T ss_pred HEEEEECCccccCcCcHHHc
Confidence 69999999999998877764
No 66
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=21.26 E-value=31 Score=21.48 Aligned_cols=20 Identities=45% Similarity=0.592 Sum_probs=16.8
Q ss_pred hhhhhccCeeccCCcccccc
Q 034631 65 RQRTQVNGKVLEDGNVHADN 84 (89)
Q Consensus 65 rqr~q~nGk~~ed~n~~~d~ 84 (89)
+||...+||.++|..+++|.
T Consensus 75 ~qrLi~~Gk~L~D~~tL~~~ 94 (111)
T 2ojr_A 75 QQRLIFAGKQLEDGRTLSDY 94 (111)
T ss_dssp TEEEEETTEECCSSCBTTTT
T ss_pred cEEEEECCEECCCCCcHHHc
Confidence 79999999999997776664
No 67
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=20.90 E-value=24 Score=20.87 Aligned_cols=35 Identities=14% Similarity=0.119 Sum_probs=23.1
Q ss_pred ccchhhhhhcCCCCCCCCccchhhhhccCeeccCCc-cccc
Q 034631 44 ARTKEENHKLLNGNSVDPADWRQRTQVNGKVLEDGN-VHAD 83 (89)
Q Consensus 44 ~r~kEe~hkllNGn~vd~~D~rqr~q~nGk~~ed~n-~~~d 83 (89)
+..|+..+... .+.+ -|||...+||.++|.+ .++|
T Consensus 35 ~~LK~~i~~~~---gip~--~~qrL~~~Gk~L~D~~~~L~~ 70 (92)
T 1wxv_A 35 QDLAQVVEEVI---GVPQ--SFQKLIFKGKSLKEMETPLSA 70 (92)
T ss_dssp HHHHHHHHHHT---CCCT--TTCEEEETTEEECCSSSBHHH
T ss_pred HHHHHHHHHHH---CcCH--HHEEEEECCeecCCCcccHHH
Confidence 34566555554 2443 3899999999999855 5554
Done!